Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008917.1 Hibiscus syriacus cultivar Beakdansim tig00112221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 766343
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 4
Found at i:3270 original size:54 final size:54
Alignment explanation
Indices: 3204--3317 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
3194 ACTGTCAAAA
* * * ** *
3204 TTTTACATACATCTGTACGGAGGCCACATGAAAAGATGAATATGTTATCAAATG
1 TTTTACAAACATCTGGACAGAAACCACAGGAAAAGATGAATATGTTATCAAATG
* * * * *
3258 TTTTACAAACATCTGGGCAGAAACCACAGGAAATGATGAATGTGTTGTCAAGTG
1 TTTTACAAACATCTGGACAGAAACCACAGGAAAAGATGAATATGTTATCAAATG
3312 TTTTAC
1 TTTTAC
3318 GAACCAATAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (54 bp):
TTTTACAAACATCTGGACAGAAACCACAGGAAAAGATGAATATGTTATCAAATG
Found at i:4730 original size:121 final size:121
Alignment explanation
Indices: 4584--4914 Score: 474
Period size: 121 Copynumber: 2.7 Consensus size: 121
4574 CACTCGATGG
* *
4584 ATCATCATTTCCAGAGAATTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
1 ATCAACATTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
*
4649 TGAGAATAACTTGTTCAACC-TTTGCATGACTCTATCACAGAAAGAGATAGATCAAC
66 TGAGAAT-ACTTGTTCAACCTTTTGAATGACTCTATCACAGAAAGAGATAGATCAAC
* *
4705 ATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGAAGTTCA
1 ATCAACATTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGA-G--GAAGAAGAAGTTCA
* * *
4770 T-A--AGAAGACTTGTTCAACCTTTTGAATGACTCTATCACAGAAGGAGATAGTTCAAC
63 TAATGAGAATACTTGTTCAACCTTTTGAATGACTCTATCACAGAAAGAGATAGATCAAC
* * *
4826 ATCAACATTTCCAGA-AGAGTTCATGATGAGAAGAACTCATCTGAAGACGAAGAAGAAATTCATA
1 ATCAACATTTCCAGAGA-AGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
*
4890 ATGAGAATACTTGTTCAACTTTTTG
65 ATGAGAATACTTGTTCAACCTTTTG
4915 CTAGATTACA
Statistics
Matches: 187, Mismatches: 15, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
118 14 0.07
119 1 0.01
120 13 0.07
121 142 0.76
122 1 0.01
123 1 0.01
124 15 0.08
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.26
Consensus pattern (121 bp):
ATCAACATTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
TGAGAATACTTGTTCAACCTTTTGAATGACTCTATCACAGAAAGAGATAGATCAAC
Found at i:5135 original size:3 final size:3
Alignment explanation
Indices: 5115--5188 Score: 91
Period size: 3 Copynumber: 25.3 Consensus size: 3
5105 TTGTCCATTC
*
5115 ATT ATT -TT ATT TTT ATT ATT ATT ATT ATT ATT A-T ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
5161 ACT A-T ATT ATT ATT TTT ATT AATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT -ATT ATT A
5189 AATAAATATT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
2 6 0.10
3 53 0.85
4 3 0.05
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:5135 original size:17 final size:18
Alignment explanation
Indices: 5115--5188 Score: 91
Period size: 17 Copynumber: 4.2 Consensus size: 18
5105 TTGTCCATTC
*
5115 ATTATT-TTATTTTTATT
1 ATTATTATTATTATTATT
5132 ATTATTATTATTATTA-T
1 ATTATTATTATTATTATT
*
5149 ATTATTATTATTACTA-T
1 ATTATTATTATTATTATT
*
5166 ATTATTATTTTTATTAATT
1 ATTATTATTATTATT-ATT
5185 ATTA
1 ATTA
5189 AATAAATATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
17 36 0.72
18 9 0.18
19 5 0.10
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTATTATTATTATTATT
Found at i:6828 original size:43 final size:43
Alignment explanation
Indices: 6771--6853 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
6761 AGTCATATAA
**
6771 ATATATATAATAAATAATATTTATTTACTTAATTTTATATTTT
1 ATATATATAATAAATAATATTTATAAACTTAATTTTATATTTT
* ** *
6814 ATATATATATTAAATCCTATTTATAAATTTAATTTTATAT
1 ATATATATAATAAATAATATTTATAAACTTAATTTTATAT
6854 ATAAATTACT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (43 bp):
ATATATATAATAAATAATATTTATAAACTTAATTTTATATTTT
Found at i:6856 original size:18 final size:18
Alignment explanation
Indices: 6804--6860 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
6794 TTTACTTAAT
*
6804 TTTATATTTTATATATATA
1 TTTA-ATTTTATATATAAA
* ** *
6823 TTAAATCCTATTTATAAA
1 TTTAATTTTATATATAAA
6841 TTTAATTTTATATATAAA
1 TTTAATTTTATATATAAA
6859 TT
1 TT
6861 ACTTTTAAAT
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
18 26 0.90
19 3 0.10
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATTTTATATATAAA
Found at i:8175 original size:27 final size:27
Alignment explanation
Indices: 8145--8201 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
8135 ATATTTATTT
8145 AATTTTTTATATAATTAATAATAAATA
1 AATTTTTTATATAATTAATAATAAATA
8172 AATTTTTTATATAATTAATAATAAATA
1 AATTTTTTATATAATTAATAATAAATA
8199 AAT
1 AAT
8202 ATATACTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
AATTTTTTATATAATTAATAATAAATA
Found at i:8861 original size:19 final size:20
Alignment explanation
Indices: 8820--8870 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
8810 GAAACCCCTT
* * *
8820 TGAAAATACAAGTTTTTTGA
1 TGAAAATACATGTATTTTAA
8840 TGAAAATACATG-ATTTTAA
1 TGAAAATACATGTATTTTAA
*
8859 TGAAGATACATG
1 TGAAAATACATG
8871 CTCTTGGCCG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGTATTTTAA
Found at i:9787 original size:30 final size:31
Alignment explanation
Indices: 9748--9809 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
9738 ACATGCTGCC
**
9748 ATGATATCTAAATGATATGCAAACATAATAA
1 ATGATATCTAAAACATATGCAAACATAATAA
*
9779 ATGA-ATCTAAAACATATGTAAACATAATAA
1 ATGATATCTAAAACATATGCAAACATAATAA
9809 A
1 A
9810 GCTAAGTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 24 0.86
31 4 0.14
ACGTcount: A:0.55, C:0.10, G:0.08, T:0.27
Consensus pattern (31 bp):
ATGATATCTAAAACATATGCAAACATAATAA
Found at i:12973 original size:19 final size:20
Alignment explanation
Indices: 12932--12982 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
12922 GAAACCCCTT
*
12932 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
12952 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
12971 TGAAGATACATG
1 TGAAAATACATG
12983 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:13919 original size:29 final size:29
Alignment explanation
Indices: 13879--13936 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
13869 ACATGCTGCC
**
13879 ATGATATCTAAATGATATGCAAACATAATA
1 ATGATATCTAAAACATATG-AAACATAATA
*
13909 ATGA-ATCTAAAACATATGTAACATAATA
1 ATGATATCTAAAACATATGAAACATAATA
13937 TAAAGCTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 9 0.36
29 12 0.48
30 4 0.16
ACGTcount: A:0.52, C:0.10, G:0.09, T:0.29
Consensus pattern (29 bp):
ATGATATCTAAAACATATGAAACATAATA
Found at i:18978 original size:16 final size:17
Alignment explanation
Indices: 18946--18980 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
18936 GAATTTTGGC
*
18946 TAAGGACATAGAAGAAT
1 TAAGGACATAAAAGAAT
18963 TAAGGA-ATAAAAGAAT
1 TAAGGACATAAAAGAAT
18979 TA
1 TA
18981 CCTTGGTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (17 bp):
TAAGGACATAAAAGAAT
Found at i:21081 original size:2 final size:2
Alignment explanation
Indices: 21068--21098 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
21058 GGAACTCCTG
*
21068 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21099 ATTGTGGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:23430 original size:20 final size:21
Alignment explanation
Indices: 23405--23456 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
23395 TTTTCCCAAT
*
23405 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
23425 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
23446 TCGCAATGCGA
1 TCGCAATGCGA
23457 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:23470 original size:20 final size:20
Alignment explanation
Indices: 23445--23558 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
23435 AATTGGGAAA
*
23445 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
23465 ATCGCAATGCAATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
23485 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
23506 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
23526 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
23546 TTCGCAACGCGAT
1 ATCGCAACGCGAT
23559 TTACATAGCG
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
19 2 0.03
20 62 0.78
21 13 0.16
22 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:23489 original size:61 final size:61
Alignment explanation
Indices: 23442--23558 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
23432 GCGAATTGGG
* * * * *
23442 AAAATCGCAATGCGATACTGACTATCGCAATGCAATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCAATACTGACTATCGCAACGCGATAATAC
* * * *
23503 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCAATACTGACTATCGCAACGCGAT
23559 TTACATAGCG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCAATACTGACTATCGCAACGCGATAATAC
Found at i:24114 original size:19 final size:19
Alignment explanation
Indices: 24076--24142 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
24066 TTCGAGAATG
24076 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
24096 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
* *
24115 AAAAACGCAACGCGAAACA
1 AAAATCGCAACGCGAAATA
24134 AAAATCGCA
1 AAAATCGCA
24143 TTGCGATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 29 0.73
20 11 0.28
ACGTcount: A:0.51, C:0.24, G:0.16, T:0.09
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:24210 original size:14 final size:14
Alignment explanation
Indices: 24193--24229 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
24183 AGTCATTTCG
*
24193 CGTTGCGATTCTCT
1 CGTTGCGATTCTAT
24207 CGTTGCGATTCTAT
1 CGTTGCGATTCTAT
24221 CGTTGCGAT
1 CGTTGCGAT
24230 AGTCATTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.11, C:0.24, G:0.24, T:0.41
Consensus pattern (14 bp):
CGTTGCGATTCTAT
Found at i:24215 original size:33 final size:33
Alignment explanation
Indices: 24143--24215 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
24133 AAAAATCGCA
** * *
24143 TTGCGATTTTCATTTCGCGTTGCGATTGTCTGG
1 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
*
24176 TCGCGATAGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
24209 TTGCGAT
1 TTGCGAT
24216 TCTATCGTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.11, C:0.22, G:0.26, T:0.41
Consensus pattern (33 bp):
TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
Found at i:24229 original size:47 final size:48
Alignment explanation
Indices: 24160--24253 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 48
24150 TTTCATTTCG
* * *
24160 CGTTGCGATTGTCTGGTCGCGATAGTCATTT-CGCGTTGCGATTCTCT
1 CGTTGCGATTCTATCGTCGCGATAGTCATTTCCGCGTTGCGATTCTCT
*
24207 CGTTGCGATTCTATCGTTGCGATAGTCATTTCCGCGTTGCGATTCTC
1 CGTTGCGATTCTATCGTCGCGATAGTCATTTCCGCGTTGCGATTCTC
24254 ATTATCTCGT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 27 0.64
48 15 0.36
ACGTcount: A:0.12, C:0.24, G:0.26, T:0.38
Consensus pattern (48 bp):
CGTTGCGATTCTATCGTCGCGATAGTCATTTCCGCGTTGCGATTCTCT
Found at i:24255 original size:20 final size:20
Alignment explanation
Indices: 24221--24278 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
24211 GCGATTCTAT
**
24221 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
24241 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
24261 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
24279 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:26362 original size:21 final size:21
Alignment explanation
Indices: 26338--26404 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
26328 TCATTCCTCG
26338 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
26359 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
26380 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
26401 AGAG
1 AGAG
26405 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:26362 original size:42 final size:42
Alignment explanation
Indices: 26295--26404 Score: 107
Period size: 42 Copynumber: 2.6 Consensus size: 42
26285 GTCATCCCTT
* * * * *
26295 AAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCG
1 AAGAGTCCCCTCCCACCGTTCAAGAGGCCACTATCA-TCCTCG
* * *
26338 -AGAGTCCCCTCCCACCGTTCAAGAGGCCACTGTCATCGTTG
1 AAGAGTCCCCTCCCACCGTTCAAGAGGCCACTATCATCCTCG
*
26379 AAGAGGT-CCCTCCCACCATTCAAGAG
1 AAGA-GTCCCCTCCCACCGTTCAAGAG
26405 CCCGATTCAC
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.07
42 50 0.89
43 2 0.04
ACGTcount: A:0.24, C:0.35, G:0.20, T:0.22
Consensus pattern (42 bp):
AAGAGTCCCCTCCCACCGTTCAAGAGGCCACTATCATCCTCG
Found at i:27781 original size:14 final size:14
Alignment explanation
Indices: 27762--27797 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
27752 ATTGTTTAAT
27762 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
27776 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
27790 TGATTTGT
1 TGATTTGT
27798 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:27989 original size:19 final size:19
Alignment explanation
Indices: 27967--28117 Score: 80
Period size: 19 Copynumber: 8.7 Consensus size: 19
27957 CGAAATTAAA
27967 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
27986 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
28001 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
28019 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
28033 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
28052 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
28067 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
28085 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
28104 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
28118 AGACATTAAG
Statistics
Matches: 95, Mismatches: 21, Indels: 31
0.65 0.14 0.21
Matches are distributed among these distances:
14 28 0.29
16 6 0.06
17 6 0.06
19 45 0.47
20 10 0.11
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:28013 original size:33 final size:32
Alignment explanation
Indices: 27971--28097 Score: 193
Period size: 33 Copynumber: 3.9 Consensus size: 32
27961 ATTAAATTCG
27971 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
**
28004 CGTTGCGATTTTCATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
28037 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
28070 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
28098 AGTAATTTCC
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
31 3 0.03
33 80 0.93
35 3 0.03
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:28060 original size:66 final size:66
Alignment explanation
Indices: 27964--28096 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
27954 ACGCGAAATT
*
27964 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
28029 G
66 G
*
28030 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
28095 G
66 G
28096 A
1 A
28097 TAGTAATTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:30393 original size:12 final size:12
Alignment explanation
Indices: 30376--30400 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30366 TCTTCGGGGA
30376 CTTTTTCTTCTT
1 CTTTTTCTTCTT
30388 CTTTTTCTTCTT
1 CTTTTTCTTCTT
30400 C
1 C
30401 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:30609 original size:24 final size:24
Alignment explanation
Indices: 30575--30628 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
30565 CTGAAACATC
* *
30575 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
30599 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
30623 ATCAAA
1 ATCAAA
30629 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:31709 original size:20 final size:20
Alignment explanation
Indices: 31684--31721 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
31674 ATTCATTTGA
*
31684 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGAGAAAATGG
31704 CTATCGCAACGAGAAAAT
1 CTATCGCAACGAGAAAAT
31722 CGCAATGCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGAGAAAATGG
Found at i:31764 original size:14 final size:16
Alignment explanation
Indices: 31744--31817 Score: 66
Period size: 19 Copynumber: 4.5 Consensus size: 16
31734 TGAAAATCGC
31744 ATTGCGATTTTC-TCG
1 ATTGCGATTTTCTTCG
31759 -TTGCGATTTTCATTTCG
1 ATTGCGATTTTC--TTCG
31776 CATTGCGATTTTCATTTCG
1 -ATTGCGATTTTC--TTCG
31795 CATTGCGATTTTC-TCG
1 -ATTGCGATTTTCTTCG
31811 -TTGCGAT
1 ATTGCGAT
31818 AGCCATTTCG
Statistics
Matches: 54, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
14 18 0.33
16 3 0.06
17 3 0.06
19 30 0.56
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.47
Consensus pattern (16 bp):
ATTGCGATTTTCTTCG
Found at i:31781 original size:19 final size:19
Alignment explanation
Indices: 31740--31807 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
31730 GAAATGAAAA
31740 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
31756 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
31773 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
31792 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
31808 TCGTTGCGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
14 11 0.23
16 3 0.06
17 3 0.06
19 30 0.64
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:31783 original size:52 final size:52
Alignment explanation
Indices: 31721--31835 Score: 131
Period size: 52 Copynumber: 2.2 Consensus size: 52
31711 AACGAGAAAA
* ***
31721 TCGCAATGCGAAATGAAAATCGCATTGCGATTTTCTCGTTGCGATTTTCATT
1 TCGCATTGCGAAATGAAAATCGCATTGCGATTTTCTCGTTGCGATAGCCATT
** ** **
31773 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCTCGTTGCGATAGCCATT
1 TCGCATTGCGAAATGAAAATCGCATTGCGATTTTCTCGTTGCGATAGCCATT
*
31825 TCGCGTTGCGA
1 TCGCATTGCGA
31836 TAGTCTGTTT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (52 bp):
TCGCATTGCGAAATGAAAATCGCATTGCGATTTTCTCGTTGCGATAGCCATT
Found at i:31943 original size:14 final size:14
Alignment explanation
Indices: 31924--31960 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
31914 CATCAATTAA
31924 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
31938 ACAAATCATCTTTT
1 ACAAATCAACATTT
31952 ACAAATCAA
1 ACAAATCAA
31961 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:33857 original size:20 final size:19
Alignment explanation
Indices: 33822--33888 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
33812 GAAACTTAAA
33822 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
33841 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
33861 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
33880 ATCGCAACG
1 ATCGCAACG
33889 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:33896 original size:14 final size:14
Alignment explanation
Indices: 33877--33934 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
33867 ATGCGAAATG
33877 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
33891 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
33907 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
33923 AAAATCGCAACG
1 AAAATCGCAACG
33935 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:33919 original size:32 final size:33
Alignment explanation
Indices: 33861--33939 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
33851 GGAAATGGCT
*
33861 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
33894 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
33926 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
33940 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:33968 original size:19 final size:18
Alignment explanation
Indices: 33946--34041 Score: 64
Period size: 16 Copynumber: 5.7 Consensus size: 18
33936 GAAACACAAA
33946 TCGCATTGCGATTTTCTTT
1 TCGCATTGCGATTTT-TTT
* *
33965 TCGCGTTGCGA--TTTTG
1 TCGCATTGCGATTTTTTT
*
33981 TCG--TTGCGATTTTATT
1 TCGCATTGCGATTTTTTT
* *
33997 TCGCATTGC-A-ATTTTG
1 TCGCATTGCGATTTTTTT
*
34013 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTT-TTT
34030 TCGCATTGCGAT
1 TCGCATTGCGAT
34042 AGCCATTTCC
Statistics
Matches: 58, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
14 10 0.17
15 1 0.02
16 19 0.33
17 7 0.12
18 4 0.07
19 17 0.29
ACGTcount: A:0.12, C:0.19, G:0.21, T:0.48
Consensus pattern (18 bp):
TCGCATTGCGATTTTTTT
Found at i:33985 original size:14 final size:14
Alignment explanation
Indices: 33968--34025 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
33958 TTTCTTTTCG
33968 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
33982 CGTTGCGATTTTATTT
1 CGTTGCGA-TTT-TGT
*
33998 CGCATTGCAATTTTGT
1 CG--TTGCGATTTTGT
34014 CGTTGCGATTTT
1 CGTTGCGATTTT
34026 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
14 17 0.47
15 3 0.08
16 8 0.22
17 3 0.08
18 5 0.14
ACGTcount: A:0.12, C:0.16, G:0.22, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:33993 original size:33 final size:33
Alignment explanation
Indices: 33951--34041 Score: 148
Period size: 32 Copynumber: 2.8 Consensus size: 33
33941 ACAAATCGCA
* *
33951 TTGCGATTTTCTTTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
*
33984 TTGCGATTTT-ATTTCGCATTGCAATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
34016 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
34042 AGCCATTTCC
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
32 29 0.55
33 24 0.45
ACGTcount: A:0.12, C:0.18, G:0.21, T:0.49
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:34060 original size:20 final size:19
Alignment explanation
Indices: 34026--34080 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
34016 TTGCGATTTT
*
34026 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
34045 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
34065 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
34081 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:34588 original size:18 final size:18
Alignment explanation
Indices: 34562--34606 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
34552 GTCGATCAGA
*
34562 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
34580 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
34598 TGATGGCTC
1 TGATGGCTC
34607 CCAAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:35951 original size:20 final size:20
Alignment explanation
Indices: 35926--35999 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 20
35916 AATAGTTTCT
*
35926 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACGC
**
35946 GAAAATGACTATCGCAACGC
1 GAAAATGAAAATCGCAACGC
** **
35966 GAATTTGACTATCGCAACGC
1 GAAAATGAAAATCGCAACGC
*
35986 GAAACT-AAAATCGC
1 GAAAATGAAAATCGC
36000 GTTGCGATTT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
19 6 0.13
20 39 0.87
ACGTcount: A:0.43, C:0.23, G:0.18, T:0.16
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACGC
Found at i:36258 original size:22 final size:22
Alignment explanation
Indices: 36233--36276 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
36223 GATGAAGATA
36233 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
36255 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
36277 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:36550 original size:20 final size:20
Alignment explanation
Indices: 36464--36558 Score: 84
Period size: 20 Copynumber: 4.7 Consensus size: 20
36454 AATTATGTAT
*
36464 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* *
36484 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGATAGTCAG
* * * *
36504 TATCTCGTTGCAATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
*
36525 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
36545 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
36559 TTTCCCAATT
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
19 3 0.05
20 45 0.74
21 11 0.18
22 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:36561 original size:41 final size:41
Alignment explanation
Indices: 36484--36561 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
36474 CGAAAGTCAG
* * *
36484 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCAATTTTGTAT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCAATTTTGTAT
* * *
36525 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCAATTTT
36562 CCCAATTCGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (41 bp):
TATCGCATTGCGAAAGTAAGTATCGCATTGCAATTTTGTAT
Found at i:36576 original size:21 final size:21
Alignment explanation
Indices: 36547--36639 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
36537 ATAGTCAGTA
36547 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
36568 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
36588 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
36609 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
36629 TCGCATTGCGA
1 TCGCATTGCGA
36640 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:36577 original size:41 final size:41
Alignment explanation
Indices: 36547--36639 Score: 150
Period size: 41 Copynumber: 2.3 Consensus size: 41
36537 ATAGTCAGTA
* *
36547 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
* *
36588 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
36629 TCGCATTGCGA
1 TCGCATTGCGA
36640 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:37806 original size:55 final size:56
Alignment explanation
Indices: 37733--37864 Score: 169
Period size: 56 Copynumber: 2.4 Consensus size: 56
37723 ACAAATACAA
* * *
37733 AAATTCATATACTTATTATGAACTTCTTAG-TTTTGCACACAAAG-TGCCATTACGG
1 AAATTCATAAACTCATTATGAACTTCTTAGTTTTTGCACACAAAGTTCCCA-TACGG
* * * * *
37788 AAATTCATAAACTCATTATTAATTTTTTTGTTTTTGCACACAAGGTTCCCATACGG
1 AAATTCATAAACTCATTATGAACTTCTTAGTTTTTGCACACAAAGTTCCCATACGG
37844 AAATTCATAAACTCATTATGA
1 AAATTCATAAACTCATTATGA
37865 TTTTTTTTTA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
55 24 0.36
56 38 0.58
57 4 0.06
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (56 bp):
AAATTCATAAACTCATTATGAACTTCTTAGTTTTTGCACACAAAGTTCCCATACGG
Found at i:37845 original size:56 final size:56
Alignment explanation
Indices: 37763--37886 Score: 171
Period size: 56 Copynumber: 2.2 Consensus size: 56
37753 AACTTCTTAG
*
37763 TTTTGCACACAAAGTGCCATTACGGAAATTCATAAACTCATTATTAATTTTTTTGT-
1 TTTTGCACACAAAGTCCCATTACGGAAATTCATAAACTCATTA-TAATTTTTTTGTA
* * *
37819 TTTTGCACACAAGGTTCCCA-TACGGAAATTCATAAACTCATTATGATTTTTTTTTAA
1 TTTTGCACACAAAG-TCCCATTACGGAAATTCATAAACTCATTATAATTTTTTTGT-A
37876 TTTTGCACACA
1 TTTTGCACACA
37887 TATAGTGCCA
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
55 10 0.16
56 36 0.59
57 15 0.25
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (56 bp):
TTTTGCACACAAAGTCCCATTACGGAAATTCATAAACTCATTATAATTTTTTTGTA
Found at i:43143 original size:56 final size:56
Alignment explanation
Indices: 43051--43300 Score: 405
Period size: 56 Copynumber: 4.5 Consensus size: 56
43041 AACTTCTTAC
* *
43051 TTCTTAG-TTTTGCACAAAAAGTGCCCATATGAAAATTCATAAACTCATTATGAAT
1 TTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTCATTATGAAT
* *
43106 TTCTTAGTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAAGTCATTATGAAT
1 TTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTCATTATGAAT
**
43162 TTCTTAGTTTTTGCACACAAAGTGCAAATACGAAAATTCATAAACTCATTATGAAT
1 TTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTCATTATGAAT
43218 TTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTCATTATGAAT
1 TTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTCATTATGAAT
*
43274 TTCTTA-ATTTTGCACACATATAGTGCC
1 TTCTTAGTTTTTGCACACA-A-AGTGCC
43301 ATTCGGTAAT
Statistics
Matches: 181, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
55 18 0.10
56 157 0.87
57 6 0.03
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.35
Consensus pattern (56 bp):
TTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTCATTATGAAT
Found at i:48183 original size:9 final size:9
Alignment explanation
Indices: 48169--48202 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
48159 TAGTAATTTT
48169 TTAAAAAAA
1 TTAAAAAAA
48178 TT-AAAAAA
1 TTAAAAAAA
*
48186 TTAAAAAAC
1 TTAAAAAAA
48195 TTAAAAAA
1 TTAAAAAA
48203 TTTATTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (9 bp):
TTAAAAAAA
Found at i:48191 original size:7 final size:8
Alignment explanation
Indices: 48172--48204 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
48162 TAATTTTTTA
48172 AAAAAATT
1 AAAAAATT
48180 AAAAAATT
1 AAAAAATT
48188 AAAAAACTT
1 AAAAAA-TT
48197 AAAAAATT
1 AAAAAATT
48205 TATTTATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAAAATT
Found at i:48191 original size:17 final size:17
Alignment explanation
Indices: 48169--48204 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
48159 TAGTAATTTT
48169 TTAAAAAAATTAAAAAA
1 TTAAAAAAATTAAAAAA
*
48186 TTAAAAAACTTAAAAAA
1 TTAAAAAAATTAAAAAA
48203 TT
1 TT
48205 TATTTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (17 bp):
TTAAAAAAATTAAAAAA
Found at i:54016 original size:14 final size:15
Alignment explanation
Indices: 53999--54027 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
53989 TTGCTTTTGA
53999 TTTTC-TTCTTTTTC
1 TTTTCTTTCTTTTTC
54013 TTTTCTTTCTTTTTC
1 TTTTCTTTCTTTTTC
54028 ACTCCAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCTTTCTTTTTC
Found at i:59494 original size:139 final size:138
Alignment explanation
Indices: 59236--59736 Score: 682
Period size: 139 Copynumber: 3.6 Consensus size: 138
59226 TACTATTCAT
* * * *
59236 GTGAAGGCGCGTTCCTGGGGGCTCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGT-CC
1 GTGAAAGCACGTTTCTGGGGG-GCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATT-TCCC
** *
59300 TATTATGTCACTCATGTCCCTCAAGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACT
64 TATTATGTCACTCATGTCCCTCGGGGGCACTATTCATGTCAGTACCTATTATGTTTGAGGGGACT
59365 TGGCAAAGTG
129 TGGCAAAGTG
*
59375 GTGAAAGCACGTTTCTGGGGGTGTGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTTCCCT
1 GTGAAAGCACGTTTCTGGGGG-GCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTTCCCT
* * * *
59440 ATTATGTCACTCATATCCCTCGGGGGCACTATTCATATCAGTACCTGTTGTGTTTGAGGGGACTT
65 ATTATGTCACTCATGTCCCTCGGGGGCACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTT
*
59505 GGTAAAGTG
130 GGCAAAGTG
* * * *
59514 GTGAAAGCACGTTTCCGGGGGCGCGCCTTCCATTATTTTGTCAAAGAATATATTATCATTGCCCT
1 GTGAAAGCACGTTTCTGGGGG-GCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTTCCCT
* *
59579 ATTATGTCACTCATGTCCCTTGGGGACACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTT
65 ATTATGTCACTCATGTCCCTCGGGGGCACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTT
**
59644 AACAAAGTG
130 GGCAAAGTG
* * * * *
59653 GTGAAAGCACGTTT-TCGGGGAGGCGCCTTCGATTGTTATGTCAGAGAATATGCTATTATTTCCC
1 GTGAAAGCACGTTTCT-GGGG-GGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTTCCC
* *
59717 TATTATGTGAGTCATGTCCC
64 TATTATGTCACTCATGTCCC
59737 CGGAGACGCA
Statistics
Matches: 319, Mismatches: 40, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
138 1 0.00
139 317 0.99
140 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (138 bp):
GTGAAAGCACGTTTCTGGGGGGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTTCCCTA
TTATGTCACTCATGTCCCTCGGGGGCACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
GCAAAGTG
Found at i:59923 original size:23 final size:23
Alignment explanation
Indices: 59875--59924 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
59865 TGAAGTTTGA
* * *
59875 ATAAATTGGATAAAATGTTATGG
1 ATAAATTGAATAAAATGTGAAGG
59898 ATAAATTGAAT-AAATGTGAAGTG
1 ATAAATTGAATAAAATGTGAAG-G
59921 ATAA
1 ATAA
59925 GTTGGTTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (23 bp):
ATAAATTGAATAAAATGTGAAGG
Found at i:60809 original size:42 final size:42
Alignment explanation
Indices: 60763--60845 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
60753 GTAACCCTGC
* * *
60763 GGAGATGGCATATGAAATGGTGGGCTTGGTATATACCCTTGA
1 GGAGATGGCATATGAAATGGAGGGCTAGGCATATACCCTTGA
* *
60805 GGAGATGGCATCTGAACTGGAGGGCTAGGCATATACCCTTG
1 GGAGATGGCATATGAAATGGAGGGCTAGGCATATACCCTTG
60846 TGGCATCATC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (42 bp):
GGAGATGGCATATGAAATGGAGGGCTAGGCATATACCCTTGA
Found at i:62576 original size:14 final size:14
Alignment explanation
Indices: 62530--62591 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
62520 CGTAGACAAA
62530 AAATATAATTACAA-
1 AAATATAATTA-AAT
62544 AAATAATAATT-AAT
1 AAAT-ATAATTAAAT
*
62558 TAATA-AATTTAAAT
1 AAATATAA-TTAAAT
*
62572 AAATATAATTATAT
1 AAATATAATTAAAT
62586 AAATAT
1 AAATAT
62592 TATTTTAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
12 2 0.05
13 5 0.12
14 25 0.62
15 8 0.20
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATATAATTAAAT
Found at i:62580 original size:23 final size:22
Alignment explanation
Indices: 62558--62634 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 22
62548 AATAATTAAT
*
62558 TAATAAATTTAAATAAATATAA
1 TAATAAATTTATATAAATATAA
* *
62580 TTATATAAATATTATTTTAATAATAA
1 -TA-ATAAAT-TTATATAAAT-ATAA
62606 -AATAATATTTATATAAATATAA
1 TAATAA-ATTTATATAAATATAA
62628 TAATAAA
1 TAATAAA
62635 AAATATAACA
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
22 5 0.11
23 19 0.43
24 9 0.20
25 7 0.16
26 4 0.09
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TAATAAATTTATATAAATATAA
Found at i:62613 original size:28 final size:28
Alignment explanation
Indices: 62559--62642 Score: 73
Period size: 28 Copynumber: 3.0 Consensus size: 28
62549 ATAATTAATT
* * *
62559 AATA-AATTTAAATAAATATAATTATATA
1 AATATAATTTTAAT-AATAAAATAATATA
* *
62587 AATATTATTTTAATAATAAAATAATATT
1 AATATAATTTTAATAATAAAATAATATA
* * *
62615 TATATAAATATAATAATAAAA-AATATA
1 AATATAATTTTAATAATAAAATAATATA
62642 A
1 A
62643 CAACTATTTG
Statistics
Matches: 44, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
27 5 0.11
28 32 0.73
29 7 0.16
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (28 bp):
AATATAATTTTAATAATAAAATAATATA
Found at i:62980 original size:61 final size:59
Alignment explanation
Indices: 62851--62993 Score: 173
Period size: 61 Copynumber: 2.4 Consensus size: 59
62841 TTAATAGAAG
* * *
62851 GCGTGTCCCC-GGGAATGTGCCTTACCACGTGGCATCCGACTCAGTAAAACTCCATGAAA
1 GCGTGTCCCCAGGG-ATGCGCCTTACCACGTGGCATCCCACTCAGTAAAACTCCAGGAAA
* * *
62910 GCGCGTCCCCAGGGATGCGCCTTACCCGCGTGGCATCCCAGTCAGCTAAAAC-CCAGGTAAA
1 GCGTGTCCCCAGGGATGCGCCTTA-CCACGTGGCATCCCACTCAG-TAAAACTCCAGG-AAA
*
62971 GCGTATCCCCAGGGATGCGCCTT
1 GCGTGTCCCCAGGGATGCGCCTT
62994 TGTGCCACCT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
59 18 0.25
60 24 0.33
61 30 0.42
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.18
Consensus pattern (59 bp):
GCGTGTCCCCAGGGATGCGCCTTACCACGTGGCATCCCACTCAGTAAAACTCCAGGAAA
Found at i:63273 original size:55 final size:56
Alignment explanation
Indices: 63184--63290 Score: 171
Period size: 55 Copynumber: 1.9 Consensus size: 56
63174 CCCTTTAATT
*
63184 TACCCGATGATTATAAAGACGGCTTCAAGATG-TTTTTTGGGTTGATGCATTACTG
1 TACCCGATGATTATAAAGACGACTTCAAGATGTTTTTTTGGGTTGATGCATTACTG
* *
63239 TACCTGATGATTATAAAGATGACTTCAAGATGTTTTTTTTGGGTTGATGCAT
1 TACCCGATGATTATAAAGACGACTTCAAGATG-TTTTTTTGGGTTGATGCAT
63291 GAATTAAATG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
55 29 0.62
57 18 0.38
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.39
Consensus pattern (56 bp):
TACCCGATGATTATAAAGACGACTTCAAGATGTTTTTTTGGGTTGATGCATTACTG
Found at i:65845 original size:21 final size:18
Alignment explanation
Indices: 65804--65846 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 18
65794 GACAAATTTG
*
65804 GTATCGATACTCATGGGA
1 GTATCGATACTCATAGGA
65822 GTATCGATACTACCCATAGGA
1 GTATCGATACT---CATAGGA
65843 GTAT
1 GTAT
65847 TGATGCAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 11 0.52
21 10 0.48
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (18 bp):
GTATCGATACTCATAGGA
Found at i:69853 original size:46 final size:46
Alignment explanation
Indices: 69796--70709 Score: 1060
Period size: 46 Copynumber: 19.5 Consensus size: 46
69786 TATGAACTAT
* *
69796 CTAAATTGCATGAAAGAATGCATTAAGGCATGAAAGGATGCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * * * *
69842 CCAAAATGCATGAACGAATGCATTAAGGCATGTAAGGATACCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * * **
69888 CTAAAATACATGAACGGATGCATTAAGGGATGAAATAATGCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * *
69934 CTAAAATGCATGAATGGATGCATTAAGGCATGAAAAGATTCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* *
69980 CTGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGTCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * *
70026 TTAAAATGCATGAACGAATGCATTAAGGCATGAAAGGATGCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
*
70072 CTAAAATGCATGAACA-GATGCAATAAGGCATGAAAGGATGCCATAA
1 CTAAAATGCATGAA-AGGATGCATTAAGGCATGAAAGGATGCCATAA
*
70118 CTAAAATGCATGAAAGGATGCATTAGGGCATGAAAGGATGCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* *
70164 ATAAAATGCATGAACA-GATGCATTAAGGCATGAAAGATGCCATAACTCCATAA
1 CTAAAATGCATGAA-AGGATGCATTAAGGCATGAAAG--G--AT---GCCATAA
*
70217 CTAAAATGCATGAACA-GATGCATTAAGGCATGAAAAGATGCCATAA
1 CTAAAATGCATGAA-AGGATGCATTAAGGCATGAAAGGATGCCATAA
* *
70263 CTAAAATGCATGAATGGATGGTTTAAGGCATGAAAGGATGCATGAAAGGATGCCATAA
1 CTAAAATGCATGAA---A-GG----ATGCAT-TAA-G--GCATGAAAGGATGCCATAA
* ** * * *
70321 TTAAAATGCATGAACTGATGCATTAAGGAATGAAAGGTTTCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
** *
70367 CTAAAATGCATGAACTGATGCATTAAGGCATGAAAGGATGCGATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * * * *
70413 CTAAAATACAGGAACGGATGTATTAAGGCATGAAAGAATGCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * * *
70459 CTGAAATGCATGAAAGGATGCATTAAGGTATGAAAGAATGCGATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * * * * *
70505 TTAAAATGCATGAACGAATGTATTAAGGCATGAAAAGATTCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
*
70551 CTAAAATGCATGAAAGGATGCAATAAGGCATGAAAGGATGCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * * *
70597 CTAAAATGCTTGAACGGATGCATTGAGGCATGAAAAGATGCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * *
70643 CTGAAATGCATGAAAGAATGCATTAAGGCATGAAAAGATGCCATAA
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* *
70689 TTCAAATGCATGAAAGGATGC
1 CTAAAATGCATGAAAGGATGC
70710 CATAACTAAA
Statistics
Matches: 745, Mismatches: 101, Indels: 44
0.84 0.11 0.05
Matches are distributed among these distances:
45 1 0.00
46 647 0.87
47 1 0.00
48 3 0.00
49 4 0.01
50 8 0.01
51 1 0.00
53 40 0.05
54 6 0.01
55 2 0.00
56 1 0.00
58 31 0.04
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.21
Consensus pattern (46 bp):
CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
Found at i:69921 original size:92 final size:92
Alignment explanation
Indices: 69796--71134 Score: 1260
Period size: 92 Copynumber: 14.1 Consensus size: 92
69786 TATGAACTAT
* * * *
69796 CTAAATTGCATGAAAGAATGCATTAAGGCATGAAAGGATGCCATAACCAAAATGCATGAACGAAT
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
* *
69861 GCATTAAGGCATGTAAGGATACCATAA
66 GCATTAAGGCATGAAAGGATGCCATAA
* * * ** *
69888 CTAAAATACATGAACGGATGCATTAAGGGATGAAATAATGCCATAACTAAAATGCATGAATGGAT
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
* *
69953 GCATTAAGGCATGAAAAGATTCCATAA
66 GCATTAAGGCATGAAAGGATGCCATAA
* * * *
69980 CTGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGTCATAATTAAAATGCATGAACGAAT
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
70045 GCATTAAGGCATGAAAGGATGCCATAA
66 GCATTAAGGCATGAAAGGATGCCATAA
* *
70072 CTAAAATGCATGAACA-GATGCAATAAGGCATGAAAGGATGCCATAACTAAAATGCATGAAAGGA
1 CTAAAATGCATGAA-AGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGA
*
70136 TGCATTAGGGCATGAAAGGATGCCATAA
65 TGCATTAAGGCATGAAAGGATGCCATAA
* *
70164 ATAAAATGCATGAACA-GATGCATTAAGGCATGAAAGATGCCATAACTCCATAACTAAAATGCAT
1 CTAAAATGCATGAA-AGGATGCATTAAGGCATGAAAG--G--AT---GCCATAACTAAAATGCAT
* *
70228 GAACAGATGCATTAAGGCATGAAAAGATGCCATAA
58 GAACGGATGCATTAAGGCATGAAAGGATGCCATAA
* * *
70263 CTAAAATGCATGAATGGATGGTTTAAGGCATGAAAGGATGCATGAAAGGATGCCATAATTAAAAT
1 CTAAAATGCATGAA---A-GG----ATGCAT-TAA-G--GCATGAAAGGATGCCATAACTAAAAT
* * * *
70328 GCATGAACTGATGCATTAAGGAATGAAAGGTTTCCATAA
54 GCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
** * * *
70367 CTAAAATGCATGAACTGATGCATTAAGGCATGAAAGGATGCGATAACTAAAATACAGGAACGGAT
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
* *
70432 GTATTAAGGCATGAAAGAATGCCATAA
66 GCATTAAGGCATGAAAGGATGCCATAA
* * * * * *
70459 CTGAAATGCATGAAAGGATGCATTAAGGTATGAAAGAATGCGATAATTAAAATGCATGAACGAAT
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
* * *
70524 GTATTAAGGCATGAAAAGATTCCATAA
66 GCATTAAGGCATGAAAGGATGCCATAA
* *
70551 CTAAAATGCATGAAAGGATGCAATAAGGCATGAAAGGATGCCATAACTAAAATGCTTGAACGGAT
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
* *
70616 GCATTGAGGCATGAAAAGATGCCATAA
66 GCATTAAGGCATGAAAGGATGCCATAA
* * * * * *
70643 CTGAAATGCATGAAAGAATGCATTAAGGCATGAAAAGATGCCATAATTCAAATGCATGAAAGGAT
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
* * * *
70708 GCCA-TAA--C-TAAAATGCATGAACATATG
66 G-CATTAAGGCATGAAA-GGATG-CCATA-A
* * * * *
70735 C-ATTAAGGCATGAAAGTATGCCATAACTAAAATGCAGGAACA-GATG-CATTAAGGCATAAAAG
1 CTA-AAATGCATGAAAGGATG-CAT---T--AAGGCATGAA-AGGATGCCA-TAA--C-T-AAA-
* *
70797 GATGTCATAACTAAAATGCATGAAGGATGAATTAAGGCATGAAAGGATGCCATAA
52 -ATG-C---A-T-GAA--C-----GGATGCATTAAGGCATGAAAGGATGCCATAA
* * * * * *
70852 CTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGTCAAAACTGAATTGCATGAAAGGAT
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
** *
70917 ATATTAAGGTATGAAAGGATGCCATAA
66 GCATTAAGGCATGAAAGGATGCCATAA
* * *
70944 TTAAAATGCATGAATA-GATGCATTAAGGCATAAAAGGATGCCATAACTAAAATGCATGAAAGGA
1 CTAAAATGCATGAA-AGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGA
* * *
71008 TGCATTAAGGAATTAAAGGATACCATAA
65 TGCATTAAGGCATGAAAGGATGCCATAA
* * * * * *
71036 CAAAAATGCATGAAAGGATGTATTAGGGCATGAAAGGATGCCATGATTAAAATGCATGAACGAAT
1 CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
* * *
71101 GTATTAATGCATGAAAAGA-GACCATAA
66 GCATTAAGGCATGAAAGGATG-CCATAA
*
71128 CTGAAAT
1 CTAAAAT
71135 TAATGAATAA
Statistics
Matches: 1026, Mismatches: 159, Indels: 124
0.78 0.12 0.09
Matches are distributed among these distances:
89 4 0.00
90 4 0.00
91 5 0.00
92 753 0.73
93 6 0.01
94 2 0.00
95 2 0.00
96 8 0.01
97 2 0.00
98 15 0.01
99 64 0.06
100 2 0.00
101 3 0.00
102 2 0.00
103 1 0.00
104 64 0.06
105 3 0.00
107 9 0.01
108 4 0.00
109 4 0.00
110 3 0.00
111 23 0.02
112 2 0.00
113 1 0.00
116 4 0.00
117 22 0.02
118 5 0.00
119 5 0.00
120 4 0.00
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.22
Consensus pattern (92 bp):
CTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGAT
GCATTAAGGCATGAAAGGATGCCATAA
Found at i:70184 original size:26 final size:26
Alignment explanation
Indices: 69925--70177 Score: 118
Period size: 20 Copynumber: 10.9 Consensus size: 26
69915 GGATGAAATA
* *
69925 ATGCCATAACTAAAATGCATGAATGG
1 ATGCCATAAATAAAATGCATGAAAGG
* *
69951 ATG-CAT---T--AAGGCATGAAAAG
1 ATGCCATAAATAAAATGCATGAAAGG
* * *
69971 ATTCCATAACTGAAATGCATGAAAGG
1 ATGCCATAAATAAAATGCATGAAAGG
*
69997 ATG-CAT---T--AAGGCATGAAAGG
1 ATGCCATAAATAAAATGCATGAAAGG
* * * *
70017 ATGTCATAATTAAAATGCATGAACGA
1 ATGCCATAAATAAAATGCATGAAAGG
*
70043 ATG-CAT---T--AAGGCATGAAAGG
1 ATGCCATAAATAAAATGCATGAAAGG
*
70063 ATGCCATAACTAAAATGCATGAACA-G
1 ATGCCATAAATAAAATGCATGAA-AGG
*
70089 ATG-C---AAT--AAGGCATGAAAGG
1 ATGCCATAAATAAAATGCATGAAAGG
*
70109 ATGCCATAACTAAAATGCATGAAAGG
1 ATGCCATAAATAAAATGCATGAAAGG
**
70135 ATG-CAT---T--AGGGCATGAAAGG
1 ATGCCATAAATAAAATGCATGAAAGG
70155 ATGCCATAAATAAAATGCATGAA
1 ATGCCATAAATAAAATGCATGAA
70178 CAGATGCATT
Statistics
Matches: 172, Mismatches: 23, Indels: 64
0.66 0.09 0.25
Matches are distributed among these distances:
19 1 0.01
20 67 0.39
21 13 0.08
22 6 0.03
24 6 0.03
25 13 0.08
26 65 0.38
27 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21
Consensus pattern (26 bp):
ATGCCATAAATAAAATGCATGAAAGG
Found at i:70307 original size:12 final size:12
Alignment explanation
Indices: 70290--70315 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70280 ATGGTTTAAG
70290 GCATGAAAGGAT
1 GCATGAAAGGAT
70302 GCATGAAAGGAT
1 GCATGAAAGGAT
70314 GC
1 GC
70316 CATAATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.12, G:0.35, T:0.15
Consensus pattern (12 bp):
GCATGAAAGGAT
Found at i:70317 original size:58 final size:58
Alignment explanation
Indices: 70244--70357 Score: 167
Period size: 58 Copynumber: 2.0 Consensus size: 58
70234 ATGCATTAAG
** *
70244 GCATGAAAAGATGCCATAACTAAAATGCATGAA-TGGATGGTTTAAGGCATGAAAGGAT
1 GCATGAAAAGATGCCATAACTAAAATGCATGAACT-GATGCATTAAGGAATGAAAGGAT
* *
70302 GCATGAAAGGATGCCATAATTAAAATGCATGAACTGATGCATTAAGGAATGAAAGG
1 GCATGAAAAGATGCCATAACTAAAATGCATGAACTGATGCATTAAGGAATGAAAGG
70358 TTTCCATAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
58 49 0.98
59 1 0.02
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.22
Consensus pattern (58 bp):
GCATGAAAAGATGCCATAACTAAAATGCATGAACTGATGCATTAAGGAATGAAAGGAT
Found at i:70583 original size:20 final size:20
Alignment explanation
Indices: 70558--70596 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
70548 TAACTAAAAT
70558 GCATGAAAGGATGCAATAAG
1 GCATGAAAGGATGCAATAAG
*
70578 GCATGAAAGGATGCCATAA
1 GCATGAAAGGATGCAATAA
70597 CTAAAATGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.13, G:0.28, T:0.15
Consensus pattern (20 bp):
GCATGAAAGGATGCAATAAG
Found at i:70636 original size:20 final size:20
Alignment explanation
Indices: 70613--70683 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 20
70603 TGCTTGAACG
70613 GATGCATTGAGGCATGAAAA
1 GATGCATTGAGGCATGAAAA
*
70633 GATGCCATAACTGAAATGCATG-AAA
1 GATG-CAT---TG--AGGCATGAAAA
*
70658 GAATGCATTAAGGCATGAAAA
1 G-ATGCATTGAGGCATGAAAA
70679 GATGC
1 GATGC
70684 CATAATTCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
20 14 0.35
21 7 0.17
22 1 0.03
24 2 0.05
25 7 0.17
26 9 0.22
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (20 bp):
GATGCATTGAGGCATGAAAA
Found at i:70701 original size:72 final size:72
Alignment explanation
Indices: 70624--70781 Score: 221
Period size: 72 Copynumber: 2.2 Consensus size: 72
70614 ATGCATTGAG
*
70624 GCATGAAAAGATGCCATAACTGAAATGCATGAA-AGAATGCATTAAGGCATGAAAAG-ATGCCAT
1 GCATGAAAAGATGCCATAACTAAAATGCATGAACA-AATGCATTAAGGCATG-AAAGTATGCCAT
* *
70687 AATTCAAAT
64 AACTAAAAT
* *
70696 GCATGAAAGGATGCCATAACTAAAATGCATGAACATATGCATTAAGGCATGAAAGTATGCCATAA
1 GCATGAAAAGATGCCATAACTAAAATGCATGAACAAATGCATTAAGGCATGAAAGTATGCCATAA
70761 CTAAAAT
66 CTAAAAT
* *
70768 GCAGGAACAGATGC
1 GCATGAAAAGATGC
70782 ATTAAGGCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
71 4 0.05
72 71 0.93
73 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.20
Consensus pattern (72 bp):
GCATGAAAAGATGCCATAACTAAAATGCATGAACAAATGCATTAAGGCATGAAAGTATGCCATAA
CTAAAAT
Found at i:70746 original size:46 final size:46
Alignment explanation
Indices: 70696--71134 Score: 521
Period size: 46 Copynumber: 9.6 Consensus size: 46
70686 TAATTCAAAT
*
70696 GCATGAAAGGATGCCATAACTAAAATGCATGAACATATGCATTAAG
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACAGATGCATTAAG
* *
70742 GCATGAAAGTATGCCATAACTAAAATGCAGGAACAGATGCATTAAG
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACAGATGCATTAAG
* * * *
70788 GCATAAAAGGATGTCATAACTAAAATGCATGAA-GGATGAATTAAG
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACAGATGCATTAAG
*
70833 GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAG
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACAGATGCATTAAG
* * * * **
70879 GCATGAAAGGATGTCAAAACTGAATTGCATGAA-AGGATATATTAAG
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACA-GATGCATTAAG
* * *
70925 GTATGAAAGGATGCCATAATTAAAATGCATGAATAGATGCATTAAG
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACAGATGCATTAAG
*
70971 GCATAAAAGGATGCCATAACTAAAATGCATGAA-AGGATGCATTAAG
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACA-GATGCATTAAG
* * * * * *
71017 GAATTAAAGGATACCATAACAAAAATGCATGAA-AGGATGTATTAGG
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACA-GATGCATTAAG
* * * *
71063 GCATGAAAGGATGCCATGATTAAAATGCATGAAC-GAATGTATTAAT
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACAG-ATGCATTAAG
* *
71109 GCATGAAAAGA-GACCATAACTGAAAT
1 GCATGAAAGGATG-CCATAACTAAAAT
71135 TAATGAATAA
Statistics
Matches: 338, Mismatches: 48, Indels: 14
0.85 0.12 0.04
Matches are distributed among these distances:
45 44 0.13
46 293 0.87
47 1 0.00
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (46 bp):
GCATGAAAGGATGCCATAACTAAAATGCATGAACAGATGCATTAAG
Found at i:70822 original size:25 final size:24
Alignment explanation
Indices: 70794--70874 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 24
70784 TAAGGCATAA
70794 AAGGATGTCATAACTAAAATGCATG
1 AAGGATG-CATAACTAAAATGCATG
* *
70819 AAGGATG---AA-T-TAAGGCATG
1 AAGGATGCATAACTAAAATGCATG
70838 AAAGGATGCCATAACTAAAATGCATG
1 -AAGGATG-CATAACTAAAATGCATG
70864 AACGGATGCAT
1 AA-GGATGCAT
70875 TAAGGCATGA
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
19 7 0.16
20 8 0.18
21 2 0.05
24 2 0.05
25 13 0.30
26 12 0.27
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.21
Consensus pattern (24 bp):
AAGGATGCATAACTAAAATGCATG
Found at i:70844 original size:20 final size:20
Alignment explanation
Indices: 70814--70891 Score: 59
Period size: 20 Copynumber: 3.6 Consensus size: 20
70804 TAACTAAAAT
70814 GCATG-AAGGATGAATTAAG
1 GCATGAAAGGATGAATTAAG
* *
70833 GCATGAAAGGATGCCATAACTAAAAT
1 GCATGAAAGGATG----AA-T-TAAG
* *
70859 GCATGAACGGATGCATTAAG
1 GCATGAAAGGATGAATTAAG
70879 GCATGAAAGGATG
1 GCATGAAAGGATG
70892 TCAAAACTGA
Statistics
Matches: 45, Mismatches: 7, Indels: 13
0.69 0.11 0.20
Matches are distributed among these distances:
19 5 0.11
20 21 0.47
21 1 0.02
22 1 0.02
24 2 0.04
25 1 0.02
26 14 0.31
ACGTcount: A:0.41, C:0.12, G:0.28, T:0.19
Consensus pattern (20 bp):
GCATGAAAGGATGAATTAAG
Found at i:70957 original size:26 final size:24
Alignment explanation
Indices: 70300--71012 Score: 169
Period size: 26 Copynumber: 30.8 Consensus size: 24
70290 GCATGAAAGG
70300 ATGCATGAAAGGATGCCATAATTAAA
1 ATGCATGAAAGGATG-CATAATT-AA
**
70326 ATGCATGAACTGATGC---ATT-A
1 ATGCATGAAAGGATGCATAATTAA
* * * * *
70346 AGGAATGAAAGGTTTCCATAACTAAA
1 ATGCATGAAAGG-ATGCATAA-TTAA
**
70372 ATGCATGAACTGATGC---ATT-A
1 ATGCATGAAAGGATGCATAATTAA
* *
70392 AGGCATGAAAGGATGCGATAACTAAA
1 ATGCATGAAAGGATGC-ATAA-TTAA
* * *
70418 ATACAGGAACGGATG--T-ATT-A
1 ATGCATGAAAGGATGCATAATTAA
* * *
70438 AGGCATGAAAGAATGCCATAACTGAA
1 ATGCATGAAAGGATG-CATAA-TTAA
70464 ATGCATGAAAGGATGC---ATT-A
1 ATGCATGAAAGGATGCATAATTAA
* * *
70484 AGGTATGAAAGAATGCGATAATTAAA
1 ATGCATGAAAGGATGC-ATAATT-AA
* *
70510 ATGCATGAACGAATG--T-ATT-A
1 ATGCATGAAAGGATGCATAATTAA
* * * *
70530 AGGCATGAAAAGATTCCATAACTAAA
1 ATGCATGAAAGGA-TGCATAA-TTAA
70556 ATGCATGAAAGGATGC--AA-T-A
1 ATGCATGAAAGGATGCATAATTAA
* *
70576 AGGCATGAAAGGATGCCATAACTAAA
1 ATGCATGAAAGGATG-CATAA-TTAA
* * *
70602 ATGCTTGAACGGATGC---ATT-G
1 ATGCATGAAAGGATGCATAATTAA
* * *
70622 AGGCATGAAAAGATGCCATAACTGAA
1 ATGCATGAAAGGATG-CATAA-TTAA
*
70648 ATGCATGAAAGAATGC---ATT-A
1 ATGCATGAAAGGATGCATAATTAA
* *
70668 AGGCATGAAAAGATGCCATAATTCAA
1 ATGCATGAAAGGATG-CATAATT-AA
*
70694 ATGCATGAAAGGATGCCATAACTAAA
1 ATGCATGAAAGGATG-CATAA-TTAA
*
70720 ATGCATGAACA-TATGC---ATT-A
1 ATGCATGAA-AGGATGCATAATTAA
* * *
70740 AGGCATGAAAGTATGCCATAACTAAA
1 ATGCATGAAAGGATG-CATAA-TTAA
*
70766 ATGCAGGAACA-GATGC---ATT-A
1 ATGCATGAA-AGGATGCATAATTAA
* * *
70786 AGGCATAAAAGGATGTCATAACTAAA
1 ATGCATGAAAGGATG-CATAA-TTAA
70812 ATGCATG-AAGGATG---AATT-A
1 ATGCATGAAAGGATGCATAATTAA
* *
70831 AGGCATGAAAGGATGCCATAACTAAA
1 ATGCATGAAAGGATG-CATAA-TTAA
*
70857 ATGCATGAACGGATGC---ATT-A
1 ATGCATGAAAGGATGCATAATTAA
* * *
70877 AGGCATGAAAGGATGTCAAAACTGAA
1 ATGCATGAAAGGATG-CATAA-TTAA
*
70903 TTGCATGAAAGGAT--AT-ATT-A
1 ATGCATGAAAGGATGCATAATTAA
* *
70923 AGGTATGAAAGGATGCCATAATTAAA
1 ATGCATGAAAGGATG-CATAATT-AA
70949 ATGCATGAATA-GATGC---ATT-A
1 ATGCATGAA-AGGATGCATAATTAA
* * *
70969 AGGCATAAAAGGATGCCATAACTAAA
1 ATGCATGAAAGGATG-CATAA-TTAA
70995 ATGCATGAAAGGATGCAT
1 ATGCATGAAAGGATGCAT
71013 TAAGGAATTA
Statistics
Matches: 485, Mismatches: 110, Indels: 185
0.62 0.14 0.24
Matches are distributed among these distances:
19 10 0.02
20 167 0.34
21 21 0.04
22 18 0.04
23 11 0.02
24 20 0.04
25 32 0.07
26 202 0.42
27 4 0.01
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (24 bp):
ATGCATGAAAGGATGCATAATTAA
Found at i:77287 original size:46 final size:46
Alignment explanation
Indices: 77210--77676 Score: 646
Period size: 46 Copynumber: 10.2 Consensus size: 46
77200 ATAAACTGAA
* *
77210 GCCATAACTAAAATGCATGAAAGGATACATTAAGGCATGAAAGGAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
* * *
77256 ACCGTAACTAAAATGCATGAATGGATGCATTAAGGCATGAAAGGAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
* * ** *
77302 GCCATAACTAAAATGCATGAATGGATGCATCAAGGCATTTAATGAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
* * * *
77348 GCTATAACTAAAATGCATGAATGGGTGCATTAAGGAATGAAAGGAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
* * * *
77394 GCCAAAAATAAAATGCATGAAAGGATGCATTAAGGAATGAAAGGAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
* * *
77440 GCCATAACTAAAATGCTTGAAAGGATGCATTAAGGCATGGAAGGAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
* *
77486 GCCATAATTAAAATACATGAACGGATGCATTAAGGCATGAAAGGAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
*
77532 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGTAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
* * * *
77578 GCCATAACTAAAATACATGAACGTATACATTAAGGGATGAAAGGAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
* * * *
77624 GCCATAACTAAAATGCATGAACAGATGTATTAAGGCCTAAAAGGAT
1 GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
77670 GCCATAA
1 GCCATAA
77677 TGTTTTTGAC
Statistics
Matches: 373, Mismatches: 48, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 373 1.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (46 bp):
GCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
Found at i:77526 original size:20 final size:20
Alignment explanation
Indices: 77501--77572 Score: 72
Period size: 20 Copynumber: 3.3 Consensus size: 20
77491 AATTAAAATA
77501 CATGAACGGATGCATTAAGG
1 CATGAACGGATGCATTAAGG
* *
77521 CATGAAAGGATGCCATAACTAAAATG
1 CATGAACGGATG-CAT---T--AAGG
77547 CATGAACGGATGCATTAAGG
1 CATGAACGGATGCATTAAGG
77567 CATGAA
1 CATGAA
77573 AGTATGCCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
20 20 0.48
21 3 0.07
22 1 0.02
24 1 0.02
25 3 0.07
26 14 0.33
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.19
Consensus pattern (20 bp):
CATGAACGGATGCATTAAGG
Found at i:79475 original size:46 final size:46
Alignment explanation
Indices: 79401--79862 Score: 320
Period size: 46 Copynumber: 10.5 Consensus size: 46
79391 CCTAAGCCAT
* * * * *
79401 AACTAAAATGCCTAAAAGGATGCATTAAGTCATTAAAGGATGCAAG
1 AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
* * * *
79447 AACTAAAATGCATGAACGAATGCTTTAAGGCATCAAAGGATGCCAT
1 AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
* ** *
79493 AAC-AAAAAGCATGAACGGATGCCA-TAA--CA--AAA--ATATATG
1 AACTAAAATGCATGAACGGATG-CATTAAGGCATCAAAGGATGCAAG
* * * * *
79532 AAC--ATATGCATTAA--G--GCA-T---G----AAAGGATTCGAT
1 AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
* * * * *
79564 AACTAAAATGTATGAACGAATGCATTAAGGCATGAAAGGATGCTAT
1 AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
* * * * *
79610 AACTGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAT
1 AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
* * * * *
79656 AATTAAAATGCATGAATGGATGCATTAAGGCATGAAAGGATGCCAT
1 AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
* * *
79702 AACTAAAATGCATGAACGGATGCATTAAGGCATAAAAGGATGCCAT
1 AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
* * * * * *
79748 AACTAAAATACATGAACGAATGCATTAAGGTATGAAAGGATGCCAT
1 AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
* * * * *
79794 AACTAAAATGCATGAACGGATGTATTAAGGCCTGAAAGGATGCCAT
1 AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
* *
79840 AACTAAAATGTATGAATGGATGC
1 AACTAAAATGCATGAACGGATGC
79863 CATAACTAAA
Statistics
Matches: 344, Mismatches: 54, Indels: 36
0.79 0.12 0.08
Matches are distributed among these distances:
30 3 0.01
32 5 0.01
33 3 0.01
34 9 0.03
36 1 0.00
38 11 0.03
39 6 0.02
41 3 0.01
42 1 0.00
43 2 0.01
45 19 0.06
46 281 0.82
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.22
Consensus pattern (46 bp):
AACTAAAATGCATGAACGGATGCATTAAGGCATCAAAGGATGCAAG
Found at i:79532 original size:26 final size:25
Alignment explanation
Indices: 79484--79534 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
79474 AGGCATCAAA
*
79484 GGATGCCATAACAAAAAGCATGAAC
1 GGATGCCATAACAAAAAACATGAAC
*
79509 GGATGCCATAACAAAAATATATGAAC
1 GGATGCCATAACAAAAA-ACATGAAC
79535 ATATGCATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.49, C:0.18, G:0.18, T:0.16
Consensus pattern (25 bp):
GGATGCCATAACAAAAAACATGAAC
Found at i:79540 original size:26 final size:25
Alignment explanation
Indices: 79485--79540 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
79475 GGCATCAAAG
* *
79485 GATGCCATAACAAAAAGCATGAACG
1 GATGCCATAACAAAAAACATGAACA
*
79510 GATGCCATAACAAAAATATATGAACA
1 GATGCCATAACAAAAA-ACATGAACA
*
79536 TATGC
1 GATGC
79541 ATTAAGGCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.48, C:0.18, G:0.16, T:0.18
Consensus pattern (25 bp):
GATGCCATAACAAAAAACATGAACA
Found at i:79602 original size:117 final size:118
Alignment explanation
Indices: 79420--79632 Score: 311
Period size: 117 Copynumber: 1.8 Consensus size: 118
79410 GCCTAAAAGG
* * *
79420 ATGCATTAAGTCATTAAAGGATGCAAGAACTAAAATGCATGAACGAATGCTTTAAGGCATCAAAG
1 ATGCATTAAGGCATGAAAGGATGCAAGAACTAAAATGCATGAACGAATGCATTAAGGCATCAAAG
*
79485 GATGCCATAAC-AAAAAGCATGAACGGATGCCATAACAAAAATATATGAACAT
66 GATGCCATAACTAAAAAGCATGAAAGGATGCCATAACAAAAATATATGAACAT
* * * * *
79537 ATGCATTAAGGCATGAAAGGATTCGATAACTAAAATGTATGAACGAATGCATTAAGGCATGAAAG
1 ATGCATTAAGGCATGAAAGGATGCAAGAACTAAAATGCATGAACGAATGCATTAAGGCATCAAAG
* * *
79602 GATGCTATAACTGAAATGCATGAAAGGATGC
66 GATGCCATAACTAAAAAGCATGAAAGGATGC
79633 ATTAAGGCAT
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
117 67 0.81
118 16 0.19
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.22
Consensus pattern (118 bp):
ATGCATTAAGGCATGAAAGGATGCAAGAACTAAAATGCATGAACGAATGCATTAAGGCATCAAAG
GATGCCATAACTAAAAAGCATGAAAGGATGCCATAACAAAAATATATGAACAT
Found at i:79606 original size:20 final size:20
Alignment explanation
Indices: 79583--79744 Score: 108
Period size: 20 Copynumber: 7.2 Consensus size: 20
79573 GTATGAACGA
79583 ATGCATTAAGGCATGAAAGG
1 ATGCATTAAGGCATGAAAGG
*
79603 ATGCTATAACTGAAATGCATGAAAGG
1 ATGC-AT---T--AAGGCATGAAAGG
79629 ATGCATTAAGGCATGAAAGG
1 ATGCATTAAGGCATGAAAGG
* *
79649 ATGCCATAATTAAAATGCATGAATGG
1 ATG-C---ATT--AAGGCATGAAAGG
79675 ATGCATTAAGGCATGAAAGG
1 ATGCATTAAGGCATGAAAGG
* *
79695 ATGCCATAACTAAAATGCATGAACGG
1 ATG-CAT---T--AAGGCATGAAAGG
*
79721 ATGCATTAAGGCATAAAAGG
1 ATGCATTAAGGCATGAAAGG
79741 ATGC
1 ATGC
79745 CATAACTAAA
Statistics
Matches: 113, Mismatches: 11, Indels: 36
0.71 0.07 0.22
Matches are distributed among these distances:
20 47 0.42
21 6 0.05
22 5 0.04
24 5 0.04
25 6 0.05
26 44 0.39
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (20 bp):
ATGCATTAAGGCATGAAAGG
Found at i:79663 original size:92 final size:92
Alignment explanation
Indices: 79501--79855 Score: 521
Period size: 92 Copynumber: 3.9 Consensus size: 92
79491 ATAACAAAAA
* * ** ** * *
79501 GCATGAACGGATGCCATAACAAAAATATATGAACATATGCATTAAGGCATGAAAGGATTCGATAA
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
*
79566 CTAAAATGTATGAACGAATGCATTAAG
66 CTAAAATGCATGAACGAATGCATTAAG
* * *
79593 GCATGAAAGGATGCTATAACTGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
* * *
79658 TTAAAATGCATGAATGGATGCATTAAG
66 CTAAAATGCATGAACGAATGCATTAAG
*
79685 GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATAAAAGGATGCCATAA
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
*
79750 CTAAAATACATGAACGAATGCATTAAG
66 CTAAAATGCATGAACGAATGCATTAAG
* * *
79777 GTATGAAAGGATGCCATAACTAAAATGCATGAACGGATGTATTAAGGCCTGAAAGGATGCCATAA
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
*
79842 CTAAAATGTATGAA
66 CTAAAATGCATGAA
79856 TGGATGCCAT
Statistics
Matches: 234, Mismatches: 29, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 234 1.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (92 bp):
GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
CTAAAATGCATGAACGAATGCATTAAG
Found at i:79669 original size:26 final size:25
Alignment explanation
Indices: 79593--79888 Score: 138
Period size: 26 Copynumber: 12.6 Consensus size: 25
79583 ATGCATTAAG
* *
79593 GCATGAAAGGATGCTATAACTGAAAT
1 GCATGAAAGGATGCCATAA-TTAAAT
*
79619 GCATGAAAGGATG-C---ATT-AAG
1 GCATGAAAGGATGCCATAATTAAAT
79639 GCATGAAAGGATGCCATAATTAAAAT
1 GCATGAAAGGATGCCATAATT-AAAT
* *
79665 GCATGAATGGATG-C---ATT-AAG
1 GCATGAAAGGATGCCATAATTAAAT
*
79685 GCATGAAAGGATGCCATAACTAAAAT
1 GCATGAAAGGATGCCATAA-TTAAAT
* *
79711 GCATGAACGGATG-C---ATT-AAG
1 GCATGAAAGGATGCCATAATTAAAT
* *
79731 GCATAAAAGGATGCCATAACTAAAAT
1 GCATGAAAGGATGCCATAA-TTAAAT
* * * *
79757 ACATGAACGAATG-C---ATT-AAG
1 GCATGAAAGGATGCCATAATTAAAT
* *
79777 GTATGAAAGGATGCCATAACTAAAAT
1 GCATGAAAGGATGCCATAA-TTAAAT
* *
79803 GCATGAACGGATG---T-ATT-AAG
1 GCATGAAAGGATGCCATAATTAAAT
* *
79823 GCCTGAAAGGATGCCATAACTAAAAT
1 GCATGAAAGGATGCCATAA-TTAAAT
* * *
79849 GTATGAATGGATGCCATAACTAAAAT
1 GCATGAAAGGATGCCATAA-TTAAAT
*
79875 GCATGAATGGATGC
1 GCATGAAAGGATGC
79889 ATTAAGGAAT
Statistics
Matches: 200, Mismatches: 40, Indels: 60
0.67 0.13 0.20
Matches are distributed among these distances:
20 66 0.33
21 8 0.04
22 7 0.04
23 2 0.01
24 7 0.04
25 7 0.04
26 103 0.51
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (25 bp):
GCATGAAAGGATGCCATAATTAAAT
Found at i:79861 original size:138 final size:138
Alignment explanation
Indices: 79501--79862 Score: 526
Period size: 138 Copynumber: 2.6 Consensus size: 138
79491 ATAACAAAAA
* * ** ** * *
79501 GCATGAACGGATGCCATAACAAAAATATATGAACATATGCATTAAGGCATGAAAGGATTCGATAA
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
* * * * * *
79566 CTAAAATGTATGAACGAATGCATTAAGGCATGAAAGGATGCTATAACTGAAATGCATGAAAGGAT
66 CTAAAATGTATGAACGGATGCATTAAGGCATAAAAGGATGCCATAACTAAAATACATGAAAGAAT
79631 GCATTAAG
131 GCATTAAG
* *
79639 GCATGAAAGGATGCCATAATTAAAATGCATGAATGGATGCATTAAGGCATGAAAGGATGCCATAA
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
* *
79704 CTAAAATGCATGAACGGATGCATTAAGGCATAAAAGGATGCCATAACTAAAATACATGAACGAAT
66 CTAAAATGTATGAACGGATGCATTAAGGCATAAAAGGATGCCATAACTAAAATACATGAAAGAAT
79769 GCATTAAG
131 GCATTAAG
* * *
79777 GTATGAAAGGATGCCATAACTAAAATGCATGAACGGATGTATTAAGGCCTGAAAGGATGCCATAA
1 GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
*
79842 CTAAAATGTATGAATGGATGC
66 CTAAAATGTATGAACGGATGC
79863 CATAACTAAA
Statistics
Matches: 199, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
138 199 1.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (138 bp):
GCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAA
CTAAAATGTATGAACGGATGCATTAAGGCATAAAAGGATGCCATAACTAAAATACATGAAAGAAT
GCATTAAG
Found at i:84433 original size:46 final size:46
Alignment explanation
Indices: 84380--84576 Score: 295
Period size: 46 Copynumber: 4.3 Consensus size: 46
84370 AACTAGAATA
* *
84380 CATGAAAGAATACCATAACTAAAATGCATGAACGGATGCATTAAGG
1 CATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGG
*
84426 CATGAAAGGATGCCATAACTAAAATGCATGAACTGATGCATTAAGG
1 CATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGG
** * * *
84472 CATTTAATGATTCTATAACTAAAATGCATGAACGGATGCATTAAGG
1 CATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGG
* * *
84518 AATGAAAGGATGCCAAAACTAAAATGCATGAATGGATGCATTAAGG
1 CATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGG
84564 CATGAAAGGATGC
1 CATGAAAGGATGC
84577 ATTAAGGCAT
Statistics
Matches: 133, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.22
Consensus pattern (46 bp):
CATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGG
Found at i:84463 original size:26 final size:26
Alignment explanation
Indices: 84365--84464 Score: 86
Period size: 26 Copynumber: 4.1 Consensus size: 26
84355 CTAAACTGAA
* * * *
84365 GCCATAACTAGAATACATGAAAGAAT
1 GCCATAACTAAAATGCATGAACGGAT
*
84391 ACCATAACTAAAATGCATGAACGGAT
1 GCCATAACTAAAATGCATGAACGGAT
* *
84417 G-CAT---T--AAGGCATGAAAGGAT
1 GCCATAACTAAAATGCATGAACGGAT
*
84437 GCCATAACTAAAATGCATGAACTGAT
1 GCCATAACTAAAATGCATGAACGGAT
84463 GC
1 GC
84465 ATTAAGGCAT
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
20 14 0.25
21 3 0.05
22 1 0.02
24 1 0.02
25 3 0.05
26 35 0.61
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (26 bp):
GCCATAACTAAAATGCATGAACGGAT
Found at i:84528 original size:20 final size:20
Alignment explanation
Indices: 84497--84733 Score: 98
Period size: 20 Copynumber: 10.7 Consensus size: 20
84487 TAACTAAAAT
*
84497 GCATGAACGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* * *
84517 GAATGAAAGGATGCCAAAACTAAAAT
1 GCATGAAAGGATG-C---A-T-TAAG
*
84543 GCATGAATGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
84563 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
84583 GCATGAAAGGATTCCATAATTAAAAT
1 GCATGAAAGGA-TGC---ATT--AAG
* *
84609 ACA-GAATGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
84628 GCATGAAAGGATGCCATAACTAAAAT
1 GCATGAAAGGATG-CAT---T--AAG
* *
84654 ACATGAAATGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* * *
84674 GCATGAAAAGATACCATAACTAAAAT
1 GCATGAAAGGAT-GCAT---T--AAG
* *
84700 GCAAGAAAGGATGCATTAGG
1 GCATGAAAGGATGCATTAAG
84720 GCATGAAAGGATGC
1 GCATGAAAGGATGC
84734 CATGATTAAA
Statistics
Matches: 161, Mismatches: 31, Indels: 50
0.67 0.13 0.21
Matches are distributed among these distances:
19 4 0.02
20 77 0.48
21 13 0.08
22 3 0.02
24 8 0.05
25 14 0.09
26 42 0.26
ACGTcount: A:0.44, C:0.12, G:0.24, T:0.20
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:84640 original size:65 final size:66
Alignment explanation
Indices: 84497--84641 Score: 229
Period size: 66 Copynumber: 2.2 Consensus size: 66
84487 TAACTAAAAT
* *
84497 GCATGAACGGATGCATTAAGGAATGAAAGGATGCCAAAACTAAAATGCATGAATGGATGCATTAA
1 GCATGAAAGGATGCATTAAGGAATGAAAGGATGCCAAAACTAAAATACATGAATGGATGCATTAA
84562 G
66 G
* * * *
84563 GCATGAAAGGATGCATTAAGGCATGAAAGGATTCCATAATTAAAATACA-GAATGGATGCATTAA
1 GCATGAAAGGATGCATTAAGGAATGAAAGGATGCCAAAACTAAAATACATGAATGGATGCATTAA
84627 G
66 G
84628 GCATGAAAGGATGC
1 GCATGAAAGGATGC
84642 CATAACTAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
65 30 0.41
66 43 0.59
ACGTcount: A:0.42, C:0.12, G:0.26, T:0.21
Consensus pattern (66 bp):
GCATGAAAGGATGCATTAAGGAATGAAAGGATGCCAAAACTAAAATACATGAATGGATGCATTAA
G
Found at i:84650 original size:111 final size:112
Alignment explanation
Indices: 84451--84681 Score: 331
Period size: 111 Copynumber: 2.1 Consensus size: 112
84441 TAACTAAAAT
** ** * * *
84451 GCATGAACTGATGCATTAAGGCATTTAATGATTCTATAACTAAAATGCATGAACGGATGCATTAA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATTCCATAACTAAAATACATGAACGGATGCATTAA
*
84516 GGAATGAAAGGATGCCAAAACTAAAATGCATG-AATGGATGCATTAAG
66 GGAATGAAAGGATGCCAAAACTAAAATACATGAAAT-GATGCATTAAG
* *
84563 GCATGAAAGGATGCATTAAGGCATGAAAGGATTCCATAATTAAAATACA-GAATGGATGCATTAA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATTCCATAACTAAAATACATGAACGGATGCATTAA
* *
84627 GGCATGAAAGGATGCCATAACTAAAATACATGAAATGATGCATTAAG
66 GGAATGAAAGGATGCCAAAACTAAAATACATGAAATGATGCATTAAG
84674 GCATGAAA
1 GCATGAAA
84682 AGATACCATA
Statistics
Matches: 106, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
111 62 0.58
112 44 0.42
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.23
Consensus pattern (112 bp):
GCATGAAAGGATGCATTAAGGCATGAAAGGATTCCATAACTAAAATACATGAACGGATGCATTAA
GGAATGAAAGGATGCCAAAACTAAAATACATGAAATGATGCATTAAG
Found at i:84691 original size:46 final size:46
Alignment explanation
Indices: 84564--84784 Score: 264
Period size: 46 Copynumber: 4.8 Consensus size: 46
84554 TGCATTAAGG
* *
84564 CATGAAAGGATGCATTAAGGCATGAAAGGATTCCATAATTAAAATA
1 CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAACTAAAATA
* *
84610 CA-GAATGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATA
1 CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAACTAAAATA
* * *
84655 CATGAAATGATGCATTAAGGCATGAAAAGATACCATAACTAAAATG
1 CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAACTAAAATA
* * * * * *
84701 CAAGAAAGGATGCATTAGGGCATGAAAGGATGCCATGATTAAAATG
1 CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAACTAAAATA
* * * * * *
84747 CATGAACGGGTGTATTAATGCATGAAAAGAGACCATAA
1 CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAA
84785 ATGAAATTAA
Statistics
Matches: 149, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 42 0.28
46 107 0.72
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.21
Consensus pattern (46 bp):
CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAACTAAAATA
Found at i:84751 original size:92 final size:91
Alignment explanation
Indices: 84563--84784 Score: 300
Period size: 92 Copynumber: 2.4 Consensus size: 91
84553 ATGCATTAAG
* * * *
84563 GCATGAAAGGATGCATTAAGGCATGAAAGGATTCCATAATTAAAATACAGAATGGATGCATTAAG
1 GCATGAAAGGATGCATTAAGGCATGAAAAGATACCATAACTAAAATACAGAAAGGATGCATTAAG
84628 GCATGAAAGGATGCCATAACTAAAAT
66 GCATGAAAGGATGCCATAACTAAAAT
* * * *
84654 ACATGAAATGATGCATTAAGGCATGAAAAGATACCATAACTAAAATGCAAGAAAGGATGCATTAG
1 GCATGAAAGGATGCATTAAGGCATGAAAAGATACCATAACTAAAATAC-AGAAAGGATGCATTAA
* *
84719 GGCATGAAAGGATGCCATGATTAAAAT
65 GGCATGAAAGGATGCCATAACTAAAAT
* * * * *
84746 GCATGAACGGGTGTATTAATGCATGAAAAGAGACCATAA
1 GCATGAAAGGATGCATTAAGGCATGAAAAGATACCATAA
84785 ATGAAATTAA
Statistics
Matches: 113, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
91 42 0.37
92 71 0.63
ACGTcount: A:0.44, C:0.12, G:0.23, T:0.21
Consensus pattern (91 bp):
GCATGAAAGGATGCATTAAGGCATGAAAAGATACCATAACTAAAATACAGAAAGGATGCATTAAG
GCATGAAAGGATGCCATAACTAAAAT
Found at i:84772 original size:203 final size:204
Alignment explanation
Indices: 84380--84773 Score: 574
Period size: 203 Copynumber: 1.9 Consensus size: 204
84370 AACTAGAATA
*
84380 CATGAAAGAATACCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGATGCCATAAC
1 CATGAAAGAATACCATAACTAAAATACATGAACGGATGCATTAAGGCATGAAAGGATGCCATAAC
* * ** * * * * *
84445 TAAAATGCATGAACTGATGCATTAAGGCATTTAATGATTCTATAACTAAAATGCATGAACGGATG
66 TAAAATACATGAAATGATGCATTAAGGCATGAAAAGATACCATAACTAAAATGCAAGAAAGGATG
*
84510 CATTAAGGAATGAAAGGATGCCAAAACTAAAATGCATGAATGGATGCATTAAGGCATGAAAGGAT
131 CATTAAGGAATGAAAGGATGCCAAAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
84575 GCATTAAGG
196 GCATTAAGG
* * * *
84584 CATGAAAGGATTCCATAATTAAAATACA-GAATGGATGCATTAAGGCATGAAAGGATGCCATAAC
1 CATGAAAGAATACCATAACTAAAATACATGAACGGATGCATTAAGGCATGAAAGGATGCCATAAC
84648 TAAAATACATGAAATGATGCATTAAGGCATGAAAAGATACCATAACTAAAATGCAAGAAAGGATG
66 TAAAATACATGAAATGATGCATTAAGGCATGAAAAGATACCATAACTAAAATGCAAGAAAGGATG
* * ** * * * *
84713 CATTAGGGCATGAAAGGATGCCATGATTAAAATGCATGAACGGGTGTATTAATGCATGAAA
131 CATTAAGGAATGAAAGGATGCCAAAACTAAAATGCATGAACGGATGCATTAAGGCATGAAA
84774 AGAGACCATA
Statistics
Matches: 167, Mismatches: 23, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
203 143 0.86
204 24 0.14
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (204 bp):
CATGAAAGAATACCATAACTAAAATACATGAACGGATGCATTAAGGCATGAAAGGATGCCATAAC
TAAAATACATGAAATGATGCATTAAGGCATGAAAAGATACCATAACTAAAATGCAAGAAAGGATG
CATTAAGGAATGAAAGGATGCCAAAACTAAAATGCATGAACGGATGCATTAAGGCATGAAAGGAT
GCATTAAGG
Found at i:89580 original size:215 final size:216
Alignment explanation
Indices: 89202--89668 Score: 699
Period size: 215 Copynumber: 2.2 Consensus size: 216
89192 TTTTATATCA
* * * * * * *
89202 ACACTATGTGTGTAACCCATGGATTTCATAATGACTTTATGAATGACTGTATCGACACTATGTGT
1 ACACTATGTGTGCAACCCATGGAATTCATAATGAGTATATGAATGACCGTATCAACACTAGGTGT
* *
89267 GTAACCCACAAAAATCATAATGAGTTTATGAATGACCGTATCGGCACTATGTGTGCAACCCACAT
66 GCAACCCACAAAAATCATAATGAGTTTATGAATGACCATATCGGCACTATGTGTGCAACCCACAT
89332 AATTCATAATGAGTTTATGAATGACCATATCGACACTATGTGTGCAACCCAC-AGAATTCATAAT
131 AATTCATAATGAGTTTATGAATGACCATATCGACACTATGTGTGCAACCCACGA-AATTCATAAT
89396 GAGTTTATGA-ATGACCATAACG
195 GAGTTTATGAGAT-ACCATAACG
*
89418 GCACTATGTGTGCAACCCATGGAATTCATAA-GAGTATATGAATGACCGTATCAACACTAGGTGT
1 ACACTATGTGTGCAACCCATGGAATTCATAATGAGTATATGAATGACCGTATCAACACTAGGTGT
* ** *
89482 GCAACCCACAGAGTTCATAATGAGTTTATGAATGACCATATTGGCACTATGTGTGCAACCCACGA
66 GCAACCCACAAAAATCATAATGAGTTTATGAATGACCATATCGGCACTATGTGTGCAACCCAC-A
* *
89547 -AATTCATAATGAGTTTATTAATGACCGTATCGACACTATGTGTGCAACCCACGAAATTCATAAT
130 TAATTCATAATGAGTTTATGAATGACCATATCGACACTATGTGTGCAACCCACGAAATTCATAAT
* * *
89611 GAGTTTGTGAGCTACCATATCG
195 GAGTTTATGAGATACCATAACG
*
89633 ACACTATGGGTGCAACCCATGGAATTCATAATGAGT
1 ACACTATGTGTGCAACCCATGGAATTCATAATGAGT
89669 TTGTGAAATT
Statistics
Matches: 226, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
215 191 0.85
216 35 0.15
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (216 bp):
ACACTATGTGTGCAACCCATGGAATTCATAATGAGTATATGAATGACCGTATCAACACTAGGTGT
GCAACCCACAAAAATCATAATGAGTTTATGAATGACCATATCGGCACTATGTGTGCAACCCACAT
AATTCATAATGAGTTTATGAATGACCATATCGACACTATGTGTGCAACCCACGAAATTCATAATG
AGTTTATGAGATACCATAACG
Found at i:89690 original size:54 final size:54
Alignment explanation
Indices: 89196--89675 Score: 613
Period size: 54 Copynumber: 8.9 Consensus size: 54
89186 TTACATTTTT
* * * * * *
89196 ATATCAACACTATGTGTGTAACCCATGGATTTCATAATGACTTTATGAATGACT
1 ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAATGACC
* * ** *
89250 GTATCGACACTATGTGTGTAACCCACAAAAATCATAATGAGTTTATGAATGACC
1 ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAATGACC
* * **
89304 GTATCGGCACTATGTGTGCAACCCACATAATTCATAATGAGTTTATGAATGACC
1 ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAATGACC
*
89358 ATATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACC
1 ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAATGACC
* * * *
89412 ATAACGGCACTATGTGTGCAACCCATGGAATTCATAA-GAGTATATGAATGACC
1 ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAATGACC
* * * * *
89465 GTATCAACACTAGGTGTGCAACCCACAGAGTTCATAATGAGTTTATGAATGACC
1 ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAATGACC
* * * *
89519 ATATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATTAATGACC
1 ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAATGACC
* * * *
89573 GTATCGACACTATGTGTGCAACCCACGAAATTCATAATGAGTTTGTGAGCT-ACC
1 ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGA-ATGACC
* * *
89627 ATATCGACACTATGGGTGCAACCCATGGAATTCATAATGAGTTTGTGAA
1 ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAA
89676 ATTTCATATC
Statistics
Matches: 374, Mismatches: 50, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
53 44 0.12
54 329 0.88
55 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (54 bp):
ATATCGACACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAATGACC
Found at i:95652 original size:54 final size:54
Alignment explanation
Indices: 95177--95650 Score: 619
Period size: 54 Copynumber: 8.8 Consensus size: 54
95167 TACATTTTTA
* * * *
95177 TATCGGCACTATGTGTGTAACCCACGGATTTCATAATGAGTTTATGAATGACCG
1 TATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACCG
* * * *
95231 TATCGGCACTTTGTGTGCATCCCACAGAATTCATAATGTGTTTATGAATGACCG
1 TATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACCG
* *
95285 TATCGACACTATGTGGGCAACCGACA-AATTCATAATGAGTTTATGAATGACCG
1 TATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACCG
* * * *
95338 TATCGACACAATATGTGCAACCCACAGAATTCCTAATGAGTTTATGAATGACCA
1 TATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACCG
* *
95392 TATCGACACTATGTGTGCAATCCACATAATTCATAATGAGTTTATGAATGACCG
1 TATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACCG
* * * * *
95446 TATCGGCACTA-GATGTGCAACCAACAAAATTCATGATGAGTTTATTAATGACCG
1 TATCGACACTATG-TGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACCG
* * *
95500 TATCGATACTATGTGTGCAACCCACGGAATTCATAATGAGTTTATGAATGACCA
1 TATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACCG
* * * * * *
95554 CATCGACATTATGTGTGCAACCCACATAATTCATAATGAGTTTGTGAATTACTG
1 TATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACCG
* ** *
95608 TATGGACACTATGTGTGCAACCCATGGAGTTCATAATGAGTTT
1 TATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTT
95651 GTTAAATTTC
Statistics
Matches: 363, Mismatches: 54, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
53 49 0.13
54 313 0.86
55 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (54 bp):
TATCGACACTATGTGTGCAACCCACAGAATTCATAATGAGTTTATGAATGACCG
Found at i:100888 original size:25 final size:25
Alignment explanation
Indices: 100854--100902 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
100844 ATGTTAATTA
*
100854 TACTTTTTCTGCAATTGAAGATGCT
1 TACTCTTTCTGCAATTGAAGATGCT
*
100879 TACTCTTTCTGCAGTTGAAGATGC
1 TACTCTTTCTGCAATTGAAGATGC
100903 ATTCCTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.41
Consensus pattern (25 bp):
TACTCTTTCTGCAATTGAAGATGCT
Found at i:102560 original size:14 final size:14
Alignment explanation
Indices: 102541--102668 Score: 102
Period size: 15 Copynumber: 8.9 Consensus size: 14
102531 GGAGAATGAT
* *
102541 AAAAAAGAATAAGG
1 AAAAAAGAAAAAAG
102555 AAAAAAGAAAAAAG
1 AAAAAAGAAAAAAG
*
102569 AAAAAAAAAAAAAAG
1 -AAAAAAGAAAAAAG
102584 AAAAAAAGAAAAAAAG
1 -AAAAAAG-AAAAAAG
102600 AAAAAA-AAAATTAA-
1 AAAAAAGAAAA--AAG
*
102614 AAAAGAAGAAAAACG
1 AAAA-AAGAAAAAAG
**
102629 AAAAAAGAATGAA-
1 AAAAAAGAAAAAAG
*
102642 AAAGAAG-AAAAAG
1 AAAAAAGAAAAAAG
102655 AAAAAAGAAGAAAA
1 AAAAAAGAA-AAAA
102669 AATTGAAATG
Statistics
Matches: 92, Mismatches: 12, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
12 3 0.03
13 16 0.17
14 24 0.26
15 38 0.41
16 11 0.12
ACGTcount: A:0.82, C:0.01, G:0.14, T:0.03
Consensus pattern (14 bp):
AAAAAAGAAAAAAG
Found at i:102566 original size:7 final size:7
Alignment explanation
Indices: 102541--102668 Score: 102
Period size: 7 Copynumber: 17.9 Consensus size: 7
102531 GGAGAATGAT
102541 AAAAAAG
1 AAAAAAG
* *
102548 AATAAGG
1 AAAAAAG
102555 AAAAAAG
1 AAAAAAG
102562 AAAAAAG
1 AAAAAAG
*
102569 AAAAAAAA
1 -AAAAAAG
102577 AAAAAAG
1 AAAAAAG
102584 AAAAAAAG
1 -AAAAAAG
102592 AAAAAAAG
1 -AAAAAAG
102600 AAAAAA-
1 AAAAAAG
102606 AAAATTAA-
1 AAAA--AAG
102614 AAAAGAAG
1 AAAA-AAG
*
102622 AAAAACG
1 AAAAAAG
102629 AAAAAAG
1 AAAAAAG
**
102636 AATGAA-
1 AAAAAAG
*
102642 AAAGAAG
1 AAAAAAG
102649 -AAAAAG
1 AAAAAAG
102655 AAAAAAG
1 AAAAAAG
102662 AAGAAAA
1 AA-AAAA
102669 AATTGAAATG
Statistics
Matches: 100, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
6 14 0.14
7 51 0.51
8 35 0.35
ACGTcount: A:0.82, C:0.01, G:0.14, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:102595 original size:16 final size:16
Alignment explanation
Indices: 102555--102669 Score: 112
Period size: 16 Copynumber: 6.9 Consensus size: 16
102545 AAGAATAAGG
102555 AAAAAAG-AAAAAAGA
1 AAAAAAGAAAAAAAGA
102570 AAAAAA-AAAAAAAGA
1 AAAAAAGAAAAAAAGA
102585 AAAAAAGAAAAAAAGAA
1 AAAAAAGAAAAAAAG-A
*
102602 AAAAAAAATTAAAAAAGA
1 AAAAAAGA--AAAAAAGA
102620 AGAAAAACG-AAAAAAGA
1 A-AAAAA-GAAAAAAAGA
102637 ATGAAAAAGAAGAAAAAG-
1 A--AAAAAGAA-AAAAAGA
102655 AAAAAAGAAGAAAAA
1 AAAAAAGAA-AAAAA
102670 ATTGAAATGA
Statistics
Matches: 88, Mismatches: 2, Indels: 19
0.81 0.02 0.17
Matches are distributed among these distances:
15 20 0.23
16 22 0.25
17 18 0.20
18 10 0.11
19 18 0.20
ACGTcount: A:0.83, C:0.01, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAAAAGAAAAAAAGA
Found at i:102603 original size:27 final size:27
Alignment explanation
Indices: 102542--102670 Score: 126
Period size: 27 Copynumber: 4.8 Consensus size: 27
102532 GAGAATGATA
* *
102542 AAAAAGAATAAGGAAAAAAGAAAA-AAG
1 AAAAAGAAAAAAGAAAAAA-AAAAGAAG
102569 AAAAA-AAAAAA-AAAGAAAAAAAGAA-
1 AAAAAGAAAAAAGAAA-AAAAAAAGAAG
102594 AAAAAGAAAAAA-AAAATTAAAAAAGAAG
1 AAAAAGAAAAAAGAAAA--AAAAAAGAAG
**
102622 AAAAACGAAAAAAG-AATGAAAAAGAAG
1 AAAAA-GAAAAAAGAAAAAAAAAAGAAG
*
102649 AAAAAGAAAAAAGAAGAAAAAA
1 AAAAAGAAAAAAGAAAAAAAAA
102671 TTGAAATGAG
Statistics
Matches: 86, Mismatches: 7, Indels: 18
0.77 0.06 0.16
Matches are distributed among these distances:
25 13 0.15
26 26 0.30
27 33 0.38
28 5 0.06
29 9 0.10
ACGTcount: A:0.82, C:0.01, G:0.14, T:0.03
Consensus pattern (27 bp):
AAAAAGAAAAAAGAAAAAAAAAAGAAG
Found at i:102616 original size:38 final size:37
Alignment explanation
Indices: 102541--102670 Score: 120
Period size: 38 Copynumber: 3.4 Consensus size: 37
102531 GGAGAATGAT
* *
102541 AAAAAAG-AATAAGGAAAAAAGAAAAAAGAAAAAAAA
1 AAAAAAGAAAAAAGAAAAAAAGAAAAAAGAAAAAAAA
*
102577 AAAAAAGAAAAAAAGAAAAAAAGAAAAAA-AAAATTAAA
1 AAAAAAG-AAAAAAGAAAAAAAGAAAAAAGAAAA-AAAA
* *
102615 AAAGAAGAAAAACGAAAAAAGAATGAAAAAGAAGAAAAAGAAA
1 AAAAAAGAAAAAAG-AAAAA-AA-G-AAAA-AAGAAAAA-AAA
*
102658 AAAGAAGAAAAAA
1 AAAAAAGAAAAAA
102671 TTGAAATGAG
Statistics
Matches: 77, Mismatches: 7, Indels: 13
0.79 0.07 0.13
Matches are distributed among these distances:
36 7 0.09
37 10 0.13
38 32 0.42
39 2 0.03
40 1 0.01
41 4 0.05
42 2 0.03
43 19 0.25
ACGTcount: A:0.82, C:0.01, G:0.14, T:0.03
Consensus pattern (37 bp):
AAAAAAGAAAAAAGAAAAAAAGAAAAAAGAAAAAAAA
Found at i:102626 original size:1 final size:1
Alignment explanation
Indices: 102555--102609 Score: 65
Period size: 1 Copynumber: 55.0 Consensus size: 1
102545 AAGAATAAGG
* * * * *
102555 AAAAAAGAAAAAAGAAAAAAAAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
102610 TTAAAAAAGA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (1 bp):
A
Found at i:104957 original size:159 final size:160
Alignment explanation
Indices: 104618--104977 Score: 485
Period size: 159 Copynumber: 2.3 Consensus size: 160
104608 TATGACTTGT
* *
104618 GAAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAATATTTCCTATAATTGAAATTTTTGAAA
1 GAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATATTTCCTAAAATTGAAATTTTTGAAA
* * ** * * *
104683 AAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAGTAAGTTATTTCCTAGAGATCTTTAAGACCT
66 AAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAATAAATTATTTCAAAGAAATATGTAAGACCT
*
104748 TCCAACATGATTTTTCATTTGATATTTTTG
131 TCCAACATGATTCTTCATTTGATATTTTTG
*
104778 GAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATCTTT-CTCAAAATTGAAATTTTTG-A
1 GAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATATTTCCT-AAAATTGAAATTTTTGAA
* **
104841 AAAGTAGGAAAGTGATTTCCAAAGTTTCTTACTTAATAAATTATTTCAAAGAAATATGTAAGACC
65 AAAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAATAAATTATTTCAAAGAAATATGTAAGACC
*
104906 TT-CAGGCATGATATCTTCATTTGATATTTTTG
130 TTCCA-ACATGAT-TCTTCATTTGATATTTTTG
* * * * *
104938 G-AAAATAAGAAATCAATTTTCTAAGTTTCTCATTTGATAT
1 GAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATAT
104978 GAAAAAAATT
Statistics
Matches: 176, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
158 2 0.01
159 99 0.56
160 75 0.43
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (160 bp):
GAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATATTTCCTAAAATTGAAATTTTTGAAA
AAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAATAAATTATTTCAAAGAAATATGTAAGACCT
TCCAACATGATTCTTCATTTGATATTTTTG
Found at i:105333 original size:102 final size:100
Alignment explanation
Indices: 105152--105427 Score: 279
Period size: 102 Copynumber: 2.7 Consensus size: 100
105142 AGAATTTTTG
* * ** * *
105152 TCTCACTTGAGACAA-GTTCCCTTTTAA-ACACAAATTTCGAAATTATTTCACTCGAAACAAAAT
1 TCTCGCTTGAGACAATTTTCCCTTGCAACACA-AAATTT-GAAATT-GTTCACTCAAAAC-AAAT
* * * *
105215 TGATCTTACTTGAGATTGTTTTTCTAATAACCAATTTCA
62 TTATCTCACTTGAGATTATTTTTCTAAAAACCAATTTCA
* ** ** * *
105254 TCTCGCTTGAGACAGTTTTGTCTTG-AAGCACAAGTTTTGGAATTGCTTCACTTAAAACAAGATT
1 TCTCGCTTGAGACAATTTTCCCTTGCAA-CACAAAATTTGAAATTG-TTCACTCAAAACAA-ATT
*
105318 TATCTCACTTGAGATTATTTTTCTAAAAATCAATTTCA
63 TATCTCACTTGAGATTATTTTTCTAAAAACCAATTTCA
*
105356 TCTTGCTTGAGACAATTTTCCCTTGCAACACAAAATTTGAAATTGTTCACTCAAAACCAAATCTT
1 TCTCGCTTGAGACAATTTTCCCTTGCAACACAAAATTTGAAATTGTTCACTCAAAA-CAAAT-TT
105421 ATCTCAC
64 ATCTCAC
105428 CTAAGATAGC
Statistics
Matches: 141, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
101 14 0.10
102 113 0.80
103 11 0.08
104 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37
Consensus pattern (100 bp):
TCTCGCTTGAGACAATTTTCCCTTGCAACACAAAATTTGAAATTGTTCACTCAAAACAAATTTAT
CTCACTTGAGATTATTTTTCTAAAAACCAATTTCA
Found at i:106098 original size:105 final size:105
Alignment explanation
Indices: 105916--106260 Score: 478
Period size: 105 Copynumber: 3.3 Consensus size: 105
105906 TCAACATATT
* * * *
105916 CAAAGGAGAAAGTTCATAATGAGAAGAATTTGTTCATTTCAAATCCATCATAGAAGGAGGTGGAT
1 CAAAGGAGAAAGTTCATAATGAGAAGAACTTGTTCCTTTCAAATCCATCACAGAAGAAGGTGGAT
105981 CAACATTTCTAGAAGAGTTCATAATGAGAAGAACTCACCC
66 CAACATTTCTAGAAGAGTTCATAATGAGAAGAACTCACCC
* * *
106021 CAAAGGAGATAGTTCATAAAGAGAAGAACTTGTTCCTTTTAAATCCATCACAGAAGAAGGTGGAT
1 CAAAGGAGAAAGTTCATAATGAGAAGAACTTGTTCCTTTCAAATCCATCACAGAAGAAGGTGGAT
** *
106086 CAACATTTCTAGAAGAGTTCATAATGAGAAGAACTTGCTC
66 CAACATTTCTAGAAGAGTTCATAATGAGAAGAACTCACCC
* * * * *
106126 TAAAGGAGGAAGTTCATAATGAGAAGAACTTGTTCCTTTCAAATTCATCGCAGAACAAGGTGGAT
1 CAAAGGAGAAAGTTCATAATGAGAAGAACTTGTTCCTTTCAAATCCATCACAGAAGAAGGTGGAT
* * * * *
106191 CGATATTTCCAGAAGATTTCATAATGAGAAGAACTCATCC
66 CAACATTTCTAGAAGAGTTCATAATGAGAAGAACTCACCC
* *
106231 C-AA-GAAAAAGTTCATAATGAGAACAACTTG
1 CAAAGGAGAAAGTTCATAATGAGAAGAACTTG
106261 CCCCAAATGA
Statistics
Matches: 210, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
103 24 0.11
104 2 0.01
105 184 0.88
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (105 bp):
CAAAGGAGAAAGTTCATAATGAGAAGAACTTGTTCCTTTCAAATCCATCACAGAAGAAGGTGGAT
CAACATTTCTAGAAGAGTTCATAATGAGAAGAACTCACCC
Found at i:106219 original size:70 final size:70
Alignment explanation
Indices: 106138--106363 Score: 176
Period size: 70 Copynumber: 3.3 Consensus size: 70
106128 AAGGAGGAAG
106138 TTCATAATGAGAAGAACTTGTTCCTTTCAAATTCATCGCAGAACAAGGTGGATCGATATTTCCAG
1 TTCATAATGAGAAGAACTTGTTCCTTTCAAATTCATCGCAGAACAAGGTGGATCGATATTTCCAG
106203 AAGAT
66 AAGAT
** * **** * * * ** * *
106208 TTCATAATGAGAAGAACTCATCCCAAGAAAAAGTTCATAATG-AGAACAA-CTTGCCCCA-A-AT
1 TTCATAATGAGAAGAACTTGTTCC-TTTCAAA-TTCAT--CGCAGAACAAGGTGGATCGATATTT
* *
106269 -GAGGA-AT
62 CCAGAAGAT
* * ** *
106276 TTCATAATGAGAAGAACATGTTCCTTTCAAATCCATCGCAGAAGGAGGTGGATCGATATTGCCAG
1 TTCATAATGAGAAGAACTTGTTCCTTTCAAATTCATCGCAGAACAAGGTGGATCGATATTTCCAG
*
106341 AAGAG
66 AAGAT
106346 TTCATAATGAGAAGAACT
1 TTCATAATGAGAAGAACT
106364 CATCCCAAGA
Statistics
Matches: 107, Mismatches: 39, Indels: 20
0.64 0.23 0.12
Matches are distributed among these distances:
64 1 0.01
65 5 0.05
66 8 0.07
67 4 0.04
68 22 0.21
69 6 0.06
70 40 0.37
71 4 0.04
72 9 0.08
73 7 0.07
74 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (70 bp):
TTCATAATGAGAAGAACTTGTTCCTTTCAAATTCATCGCAGAACAAGGTGGATCGATATTTCCAG
AAGAT
Found at i:106260 original size:138 final size:138
Alignment explanation
Indices: 106101--106391 Score: 474
Period size: 138 Copynumber: 2.1 Consensus size: 138
106091 TTTCTAGAAG
* * * *
106101 AGTTCATAATGAGAAGAACTTGCTCTAAAGGAGGAAGTTCATAATGAGAAGAACTTGTTCCTTTC
1 AGTTCATAATGAGAACAACTTGCCCCAAAGGAGGAAGTTCATAATGAGAAGAACATGTTCCTTTC
* * *
106166 AAATTCATCGCAGAACAAGGTGGATCGATATTTCCAGAAGATTTCATAATGAGAAGAACTCATCC
66 AAATCCATCGCAGAACAAGGTGGATCGATATTGCCAGAAGAGTTCATAATGAGAAGAACTCATCC
106231 CAAGAAAA
131 CAAGAAAA
* *
106239 AGTTCATAATGAGAACAACTTGCCCCAAATGAGGAATTTCATAATGAGAAGAACATGTTCCTTTC
1 AGTTCATAATGAGAACAACTTGCCCCAAAGGAGGAAGTTCATAATGAGAAGAACATGTTCCTTTC
**
106304 AAATCCATCGCAGAAGGAGGTGGATCGATATTGCCAGAAGAGTTCATAATGAGAAGAACTCATCC
66 AAATCCATCGCAGAACAAGGTGGATCGATATTGCCAGAAGAGTTCATAATGAGAAGAACTCATCC
106369 CAAGAAAA
131 CAAGAAAA
*
106377 AGTTCATTATGAGAA
1 AGTTCATAATGAGAA
106392 GAAATTTTTT
Statistics
Matches: 141, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
138 141 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.24
Consensus pattern (138 bp):
AGTTCATAATGAGAACAACTTGCCCCAAAGGAGGAAGTTCATAATGAGAAGAACATGTTCCTTTC
AAATCCATCGCAGAACAAGGTGGATCGATATTGCCAGAAGAGTTCATAATGAGAAGAACTCATCC
CAAGAAAA
Found at i:108350 original size:31 final size:28
Alignment explanation
Indices: 108284--108351 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 28
108274 AATTTCATTA
*
108284 CTTTAATTTTTTATCTTTTTATTTTAGC
1 CTTTAATTTTTTATCTTTTAATTTTAGC
108312 CTATTAATTTTTTAAGTAC-TTTAATTTTAGTC
1 CT-TTAATTTTTT-A-T-CTTTTAATTTTAG-C
108344 CTTTAATT
1 CTTTAATT
108352 ATTGTGCTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 2 0.06
29 10 0.29
30 1 0.03
31 17 0.50
32 4 0.12
ACGTcount: A:0.24, C:0.10, G:0.04, T:0.62
Consensus pattern (28 bp):
CTTTAATTTTTTATCTTTTAATTTTAGC
Found at i:112448 original size:21 final size:19
Alignment explanation
Indices: 112415--112459 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
112405 TTTATCATAG
*
112415 CATTTTTGTTTTACTTTTT
1 CATTTTTGTTTTACTTGTT
112434 CATTTTTCAGTTTTACTTGTT
1 CATTTTT--GTTTTACTTGTT
112455 -ATTTT
1 CATTTT
112460 CCTTGACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 7 0.30
20 5 0.22
21 11 0.48
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (19 bp):
CATTTTTGTTTTACTTGTT
Found at i:120310 original size:18 final size:19
Alignment explanation
Indices: 120287--120324 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
120277 TTAAGTAGAA
*
120287 ATAAAATA-ATTAAAAATT
1 ATAAAATATATAAAAAATT
120305 ATAAAATATATAAAAAATT
1 ATAAAATATATAAAAAATT
120324 A
1 A
120325 AAGTTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAAAATATATAAAAAATT
Found at i:123082 original size:54 final size:54
Alignment explanation
Indices: 122951--123187 Score: 305
Period size: 54 Copynumber: 4.4 Consensus size: 54
122941 TGGTTTTACG
** * * *
122951 CACATAGTGTTGATACGGTAATTCACAAACTTATTATGAATTATGTGGGATG-A
1 CACATAGTGCCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTGCA
* * * *
123004 AACATAGTGCCGATACGGTAATTCACCAACTCACTATGAATTATGTGGGTTGCA
1 CACATAGTGCCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTGCA
* * *
123058 CATATAGTGCCGATACGGTAATTCATAAACTCATTATGAATTACGTGAGTTGCA
1 CACATAGTGCCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTGCA
* * * *
123112 CACATAGTGTCGATACGGTAATTCGCAAACTCATTATGAACTACGTAGGTTGCA
1 CACATAGTGCCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTGCA
* *
123166 CACATAGTGCCTATACAGTAAT
1 CACATAGTGCCGATACGGTAAT
123188 GCAACATATA
Statistics
Matches: 159, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 45 0.28
54 114 0.72
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (54 bp):
CACATAGTGCCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTGCA
Found at i:128661 original size:54 final size:54
Alignment explanation
Indices: 128591--128975 Score: 470
Period size: 54 Copynumber: 7.2 Consensus size: 54
128581 CGTGGTTTTA
* * * *
128591 CACACATAGTGCCGATACGGTAATTAACAAACTCATTATGAAGTGCGTGGGTTG
1 CACACATAGTGTCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTG
* * * *
128645 CACACATAATGTCGATACGATAATTCACAAACTTATTATGAATTACGTGGGTTA
1 CACACATAGTGTCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTG
* * * * * *
128699 CAGACATAGTGTCGATACGGTAATTCATAAACTTATTTTAAATTACGTAGGTTG
1 CACACATAGTGTCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTG
* * * * * *
128753 CATACATAGTGCCAATACGGTAATTCAGAAACTCATTATGAATTAAGTGGATTG
1 CACACATAGTGTCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTG
* * *
128807 --CACATAGTGTC-ATATGGTAATTCACTAACTCATTATCAATTACGTGGGTTG
1 CACACATAGTGTCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTG
* * ** * * *
128858 CACATATAGTGCCGATACAATAATCCACAAACTCATTATGAATTACATGGGCTG
1 CACACATAGTGTCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTG
*
128912 CACACATAGTGTCGATATGGTAATTCACAAACTCATTATGAATTACGTGGGTTG
1 CACACATAGTGTCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTG
128966 CACACATAGT
1 CACACATAGT
128976 ACCGATACTA
Statistics
Matches: 276, Mismatches: 52, Indels: 6
0.83 0.16 0.02
Matches are distributed among these distances:
51 34 0.12
52 9 0.03
53 9 0.03
54 224 0.81
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.30
Consensus pattern (54 bp):
CACACATAGTGTCGATACGGTAATTCACAAACTCATTATGAATTACGTGGGTTG
Found at i:131711 original size:132 final size:133
Alignment explanation
Indices: 131491--131795 Score: 359
Period size: 132 Copynumber: 2.3 Consensus size: 133
131481 ATTCACTTCA
* * * *
131491 CACTACTCTTCAGGGAAGTTTGAA-CAGAACTTGATTTGCTTCACTGCTCTTCAGGAAGACCAAA
1 CACTGCTCTTCAGGGAAGATTGAATC-GAACGTGATTTGCTTCACTACTCTTCAGGAAGACCAAA
* * * * * * * * *
131555 TCTAAGGGAAAGGGGATCTTCTCCACTACTCTTTAGGAGAGATCA-AACT-CGTAAATTTTGATC
65 TCGAAGAGAAAGAGAATATGCTCCACTACTCTTTAGGAGAGATCATAA-TGAGAAAACTTTGATC
131618 CACTT
129 CACTT
* * *
131623 CACTGTTCTTCAGGGAAGATTGAATCGAACGTGATTTGCTTCGCTACTCTTCAGGAATACCAAAT
1 CACTGCTCTTCAGGGAAGATTGAATCGAACGTGATTTGCTTCACTACTCTTCAGGAAGACCAAA-
* *
131688 TCGAA-AG-AAGAAGAATATGCTCCACTTCTCTTTAGGGGAGATCATAATGAGAAAACTTTGATC
65 TCGAAGAGAAAG-AGAATATGCTCCACTACTCTTTAGGAGAGATCATAATGAGAAAACTTTGATC
131751 CACTT
129 CACTT
* *
131756 TACTGCTCTTCAGAGAAGATTGAATCGAACGTGATTTGCT
1 CACTGCTCTTCAGGGAAGATTGAATCGAACGTGATTTGCT
131796 CCTCTTATCT
Statistics
Matches: 147, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
131 3 0.02
132 84 0.57
133 60 0.41
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (133 bp):
CACTGCTCTTCAGGGAAGATTGAATCGAACGTGATTTGCTTCACTACTCTTCAGGAAGACCAAAT
CGAAGAGAAAGAGAATATGCTCCACTACTCTTTAGGAGAGATCATAATGAGAAAACTTTGATCCA
CTT
Found at i:132841 original size:42 final size:42
Alignment explanation
Indices: 132744--132823 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
132734 AAGGTCTTAT
* * * *
132744 AGATGGCCCAAAGAACTT-ATCATCTTACTCGAAAGACTGAC
1 AGATGACCCAAAGGATTTAATCATCATACTCGAAAGACTGAC
*
132785 AGATGACCCAAAGGATTTAATCATCATGCTCGAAAGACT
1 AGATGACCCAAAGGATTTAATCATCATACTCGAAAGACT
132824 TACTAATGAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 15 0.45
42 18 0.55
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
AGATGACCCAAAGGATTTAATCATCATACTCGAAAGACTGAC
Found at i:133237 original size:215 final size:216
Alignment explanation
Indices: 132804--133254 Score: 572
Period size: 216 Copynumber: 2.1 Consensus size: 216
132794 AAAGGATTTA
* * *
132804 ATCATCATGCTCGAAAGACTTACTAATGACTCGAAGGACTTGTCAATTTTGGAAATAATCTACTG
1 ATCATCTTGCTCGAAAGACTTACTAATGACCCGAAGGACTTGACAATTTTGGAAATAATCTACTG
* * * *
132869 GATAAGAAACTTTGGAAATTACTTTATTACTTTTCAAAAAATTCATTTTTTGAAAAATATTAAAT
66 GATAAGAAACTTTGGAAATCACTTTATTACTTTTCAAAAAATTCACTTTCTGAAAAATACTAAAT
** * *
132934 GAGAAACTTTGAAAACCGTTTTCCCATTTTTCAAATTCATGTGAAAACATCCTACCCAAAGGTCT
131 GAGAAACTTTGAAAACCACTTTCCCATTTTTAAAAATCATGTGAAAACATCCTACCCAAAGGTCT
*
132999 TGAGAATGGCCCGAAGGACTT
196 TGAGAATGGCCCGAAAGACTT
* * * ** *
133020 ATCATCTTGCTAGAAAGACTTACTGATGGCCCGAAGGACTT-ACGAATTTTGGAAATTGTTTACT
1 ATCATCTTGCTCGAAAGACTTACTAATGACCCGAAGGACTTGAC-AATTTTGGAAATAATCTAC-
* * *
133084 TGG-TAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCACTTTCTG-AAAATACTAA
64 TGGATAAGAAACTTTGGAAATCACTTTATTACTTTTCAAAAAATTCACTTTCTGAAAAATACTAA
* * * *
133147 ATGAGAAACTTTGGAAATCACTTTCTCATTTTTTAAAAATCACT-TGAAAA-ATCCTACCCCAAG
129 ATGAGAAACTTTGAAAACCACTTTCCCA-TTTTTAAAAATCA-TGTGAAAACATCCTACCCAAAG
*
133210 GTCTT-ATATATGGCCCGAAAGACTT
192 GTCTTGAGA-ATGGCCCGAAAGACTT
*
133235 ATCATCTTGTTCGAAAGACT
1 ATCATCTTGCTCGAAAGACT
133255 AACAGATACT
Statistics
Matches: 202, Mismatches: 28, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
214 2 0.01
215 83 0.41
216 113 0.56
217 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (216 bp):
ATCATCTTGCTCGAAAGACTTACTAATGACCCGAAGGACTTGACAATTTTGGAAATAATCTACTG
GATAAGAAACTTTGGAAATCACTTTATTACTTTTCAAAAAATTCACTTTCTGAAAAATACTAAAT
GAGAAACTTTGAAAACCACTTTCCCATTTTTAAAAATCATGTGAAAACATCCTACCCAAAGGTCT
TGAGAATGGCCCGAAAGACTT
Found at i:134043 original size:259 final size:259
Alignment explanation
Indices: 133575--134207 Score: 826
Period size: 259 Copynumber: 2.4 Consensus size: 259
133565 CCGAAGAACT
* * * * *
133575 TACTAAGTAAGAAACTTTGGAAATCGCTTTCACATTTTTTTGAAAATCACGTGAAAATATCCTGC
1 TACTAAGTGAGAAACTTTGGAAATCGCTTTCTCATTTTTTTGAAAATCATGTGAAAACATCATGC
* * * * ** * *
133640 CTGAAGGTTTTATAGATGACCCGAATGACTTATGGTCTTGCTTGAAAGACTGATAGATGACCCGA
66 CCGAAGGTCTTATAGATGGCCCGAAAGACTTATAATCTTGCTCGAAAGACTGACAGATGACCCGA
* *
133705 ATGATTTAATTATCATGCTCGAAAAACTTACTGATAGCCCGAAGGACTTACCGATTTTGGAAATA
131 ATGATATAATCATCATGCTCGAAAAACTTACTGATAGCCCGAAGGACTTACCGATTTTGGAAATA
* * *
133770 GTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTTATTTTCTGAAAA
196 GTTTACTAGGTAAGAAAATTTGGAAATCGCTTTCTTACTTTTCAAAAATATCATTTTCTGAAAA
* * *
133834 TATTAAGTGAGAAACTTTGAAAATCGC-TTCTTCATTTTTTTGAAAATCATGTGAAAACAACATG
1 TACTAAGTGAGAAACTTTGGAAATCGCTTTC-TCATTTTTTTGAAAATCATGTGAAAACATCATG
* * *
133898 CCCAAAGGTCTTATAGATGGCCCGAAAGACTTATCATTTTGCTCGAAAGACTGACAGATGACCCG
65 CCCGAAGGTCTTATAGATGGCCCGAAAGACTTATAATCTTGCTCGAAAGACTGACAGATGACCCG
* *
133963 AA-GTATATACTCATCATGCTC-AAAAGACTTACTGATGGCCCGAAGGACTTACCGA-TTTGGTA
130 AATG-ATATAATCATCATGCTCGAAAA-ACTTACTGATAGCCCGAAGGACTTACCGATTTTGG-A
* * * * *
134025 AATGGTTTATTGGGTAAGAAAATTTTGAAATCGCTTTTTTACTTTTCAAAAATATCATTTTCTGA
192 AATAGTTTACTAGGTAAGAAAATTTGGAAATCGCTTTCTTACTTTTCAAAAATATCATTTTCTGA
134090 AAA
257 AAA
* * *** *
134093 TACTAAATGAGAAACTTTGGAAATTGCTTTCTCA-TTTTAAAAAAATCATGTGAAAACATCATTC
1 TACTAAGTGAGAAACTTTGGAAATCGCTTTCTCATTTTTTTGAAAATCATGTGAAAACATCATGC
* * * *
134157 CCGAAGGTCTTATAAATGGTCCGAAGGACCTATAATCTTGCTCGAAAGACT
66 CCGAAGGTCTTATAGATGGCCCGAAAGACTTATAATCTTGCTCGAAAGACT
134208 TAAAGATTTA
Statistics
Matches: 323, Mismatches: 46, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
258 82 0.25
259 238 0.74
260 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (259 bp):
TACTAAGTGAGAAACTTTGGAAATCGCTTTCTCATTTTTTTGAAAATCATGTGAAAACATCATGC
CCGAAGGTCTTATAGATGGCCCGAAAGACTTATAATCTTGCTCGAAAGACTGACAGATGACCCGA
ATGATATAATCATCATGCTCGAAAAACTTACTGATAGCCCGAAGGACTTACCGATTTTGGAAATA
GTTTACTAGGTAAGAAAATTTGGAAATCGCTTTCTTACTTTTCAAAAATATCATTTTCTGAAAA
Found at i:143979 original size:15 final size:15
Alignment explanation
Indices: 143959--143990 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
143949 GAGCCTTTTT
143959 TAATGATTTACGAAA
1 TAATGATTTACGAAA
143974 TAATGATTTACGAAA
1 TAATGATTTACGAAA
143989 TA
1 TA
143991 TGGTTGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.34
Consensus pattern (15 bp):
TAATGATTTACGAAA
Found at i:151497 original size:26 final size:26
Alignment explanation
Indices: 151462--151511 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
151452 TATATTTTCA
*
151462 TTCTCCTAAAATTTTATAAGTTCATC
1 TTCTCCTAAAATTTTATAAATTCATC
*
151488 TTCTCTTAAAATTTTATAAATTCA
1 TTCTCCTAAAATTTTATAAATTCA
151512 CCCGTAGCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.02, T:0.48
Consensus pattern (26 bp):
TTCTCCTAAAATTTTATAAATTCATC
Done.