genome.fa.s8918.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008918.1 Hibiscus syriacus cultivar Beakdansim tig00112222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50959

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6405--6546	44	3.2	45	87	4	200	28	22	16	32	1.96
9628--9700	20	3.7	20	81	3	85	26	28	21	23	1.99
9622--9708	40	2.2	39	83	6	113	32	24	20	22	1.98
9635--9721	40	2.2	41	81	8	99	33	26	19	20	1.97
10429--10474	20	2.4	20	82	17	62	32	19	26	21	1.97
10528--10572	19	2.3	20	84	3	56	28	17	26	26	1.98
11809--11936	30	4.3	30	95	3	224	29	17	17	34	1.94
11809--11936	59	2.2	59	94	2	222	29	17	17	34	1.94
13721--13852	47	2.9	46	82	11	166	33	20	6	40	1.77
14722--14766	14	3.2	14	77	0	54	37	0	0	62	0.96
15388--15645	21	12.4	21	77	13	232	21	20	21	36	1.95
15388--15603	42	5.2	40	86	6	281	21	20	21	36	1.95
15377--15603	84	2.7	82	90	4	366	21	20	22	35	1.96
15430--15652	60	3.6	61	81	11	249	21	20	22	34	1.97
15740--15774	6	5.8	6	100	0	70	34	48	17	0	1.47
16255--16363	5	21.0	5	93	5	132	0	20	41	38	1.52
16537--16579	21	2.0	21	100	0	86	23	27	20	27	1.99
16591--16645	21	2.6	21	94	0	92	20	21	27	30	1.98
22350--22468	42	2.8	42	92	0	193	16	18	18	46	1.85
22626--22702	22	3.5	22	82	10	77	49	0	0	50	1.00
22626--22676	21	2.3	23	90	10	79	52	0	0	47	1.00
22628--22705	23	3.3	24	77	8	63	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22643--22692	21	2.3	23	86	10	70	50	0	0	50	1.00
23013--23281	20	13.4	20	82	6	294	36	25	18	19	1.94
23953--23999	24	2.0	24	87	8	69	25	14	21	38	1.92
24174--24198	12	2.1	12	100	0	50	72	0	28	0	0.86
26496--26802	19	17.4	19	79	16	358	47	18	20	14	1.83
26524--26802	52	5.2	53	90	5	358	47	17	20	14	1.83
26563--26802	71	3.4	71	83	11	355	47	17	20	15	1.83
26496--26834	142	2.4	137	89	6	497	46	18	20	14	1.83
26831--26932	19	5.6	19	85	12	151	14	23	17	44	1.86
27039--27075	14	2.6	14	91	0	65	45	21	0	32	1.52
27070--27142	12	6.0	12	67	20	53	57	16	1	24	1.47
27056--27128	38	1.9	38	97	0	137	53	16	1	28	1.51
28997--29053	14	3.7	14	77	20	60	45	22	21	10	1.82
28978--29070	33	2.8	33	95	0	168	47	21	20	10	1.80
28941--29075	19	7.6	19	76	16	128	45	23	19	11	1.82
29071--29199	19	7.3	19	75	17	125	8	17	28	45	1.77
29071--29162	33	2.8	33	93	3	150	7	18	28	45	1.76
29243--29622	93	4.1	93	99	0	753	46	18	12	22	1.83
29243--29622	185	2.0	186	99	0	753	46	18	12	22	1.83
31324--31413	14	5.7	14	74	23	81	42	23	25	8	1.83
31316--31430	33	3.5	33	95	0	212	45	20	24	9	1.81
31323--31435	19	6.8	18	72	23	88	43	22	24	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31447--31501	14	3.6	14	73	21	56	9	27	23	40	1.85
31622--31692	33	2.2	33	94	0	124	47	16	23	11	1.79
31873--31927	22	2.5	22	81	0	74	20	16	40	23	1.91
32073--32266	20	9.6	20	82	5	221	19	19	25	35	1.95
32073--32266	60	3.2	60	83	0	253	19	19	25	35	1.95
32259--32335	21	3.7	20	70	13	57	27	16	23	32	1.96
32321--32372	20	2.6	20	96	0	95	21	13	26	38	1.90
32890--32929	15	2.7	15	92	0	62	45	5	2	47	1.38
47418--47497	33	2.4	34	81	14	94	72	1	18	7	1.15
47425--47480	21	2.7	21	78	15	62	71	1	19	7	1.18
47427--47503	27	2.8	26	81	13	77	71	1	19	7	1.17
47448--47506	17	3.5	17	75	25	63	71	0	20	8	1.12

Tables:   1

The End!