Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008920.1 Hibiscus syriacus cultivar Beakdansim tig00112224_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1287743
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 4
Found at i:758656 original size:200 final size:196
Alignment explanation
Indices: 758313--758875 Score: 628
Period size: 200 Copynumber: 2.9 Consensus size: 196
758303 CTATAAAAAA
* * * * * *
758313 AAATTAATATTTTGTTATAAATTTTTGTTATGACTAAAGAAATTTGTCAAAAATT-TTGTTTTAA
1 AAATTAATATTTT-TTATAAATTTTTATTATGATTAAACAAATTTATCATAAATTGTTATTTTAA
* * * * *
758377 GTAAATATTCTGACTAAATAAATTTGATGTAAT-TTCTTATTTTTTATTAAATTTAATATGTTAT
65 G-AAATATTATGACTAAATAAATTTGA-ATAATATTTTTA-TTTTGACTAAATTTAATATGTTAT
*
758441 TGTGACTAAATAAATTTGTTACAATTTATTATTGTTAAAAAGTAT-TATTTGTCATAAATTTTTA
127 TGTGACTAAATAAATTTGTTACAATTTATTATTGTTAAAAA-TATGT-TTTGTCACAAATTTTTA
758505 TATTGA-
190 TATTGAG
* * * *
758511 ACAATTAATATATTTTTATAAATTTTTATTGTGATTAAACAAATTTATTATAAATTGTCATTTTG
1 A-AATTAATAT-TTTTTATAAATTTTTATTATGATTAAACAAATTTATCATAAATTGTTATTTTA
758576 AGAAACTATTATGACTAAATAAATTTGACATAATATTTTTATTTTGACTAAATTTAATATGTTAT
64 AGAAA-TATTATGACTAAATAAATTTGA-ATAATATTTTTATTTTGACTAAATTTAATATGTTAT
* * *
758641 TGTGATTAAATAAATTTTTTACAATTTATTATTTTTGAAAAATATGTTTTGTCACAAATTTTTAT
127 TGTGACTAAATAAATTTGTTACAATTTATTATTGTT-AAAAATATGTTTTGTCACAAATTTTTAT
758706 ATTGAG
191 ATTGAG
* *** * * *
758712 AAATTAACATTTAAGAT-AATTATTATTATAATTAAATAAATTTATCAT-AATATGTTATTTTCA
1 AAATTAATATTTTTTATAAATTTTTATTATGATTAAACAAATTTATCATAAAT-TGTTATTTT-A
* *
758775 A-AAATATTGTGACTAAATAAATTT-AACAATATTTTTATTTTGACTAAA-TT--TATGTTATTG
64 AGAAATATTATGACTAAATAAATTTGAATAATATTTTTATTTTGACTAAATTTAATATGTTATTG
* * * *
758835 GGACTAAATAAATTTGTCATAATTTTTTA-TGTTACAAAATA
129 TGACTAAATAAATTTGTTACAATTTATTATTGTTA-AAAATA
758876 GCATTTGTTA
Statistics
Matches: 314, Mismatches: 40, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
190 1 0.00
191 9 0.03
192 33 0.11
194 2 0.01
195 22 0.07
196 1 0.00
197 22 0.07
198 38 0.12
199 51 0.16
200 123 0.39
201 12 0.04
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (196 bp):
AAATTAATATTTTTTATAAATTTTTATTATGATTAAACAAATTTATCATAAATTGTTATTTTAAG
AAATATTATGACTAAATAAATTTGAATAATATTTTTATTTTGACTAAATTTAATATGTTATTGTG
ACTAAATAAATTTGTTACAATTTATTATTGTTAAAAATATGTTTTGTCACAAATTTTTATATTGA
G
Found at i:758995 original size:14 final size:14
Alignment explanation
Indices: 758970--759005 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 14
758960 TATCATTAAA
758970 TTAAACATAAAATTT
1 TTAAA-ATAAAATTT
758985 TTAAAATAAAATTT
1 TTAAAATAAAATTT
758999 TCTAAAA
1 T-TAAAA
759006 ACATAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
TTAAAATAAAATTT
Found at i:760887 original size:22 final size:22
Alignment explanation
Indices: 760833--760888 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
760823 GACTCAAACT
*
760833 ATTAACTTTGATCGGTCAGACC
1 ATTAACTTTGACCGGTCAGACC
* * *
760855 ATTGACATTGACCGGTCTGACC
1 ATTAACTTTGACCGGTCAGACC
*
760877 GTTAACTTTGAC
1 ATTAACTTTGAC
760889 TTTGACTGTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (22 bp):
ATTAACTTTGACCGGTCAGACC
Found at i:767393 original size:20 final size:20
Alignment explanation
Indices: 767368--767418 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
767358 GAAATTTCAC
767368 CAAATTCCACTAATCCACAA
1 CAAATTCCACTAATCCACAA
767388 CAAATTCCACTAATCCACAA
1 CAAATTCCACTAATCCACAA
*
767408 AAAATTCCACT
1 CAAATTCCACT
767419 GATTAAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.22
Consensus pattern (20 bp):
CAAATTCCACTAATCCACAA
Found at i:770806 original size:22 final size:22
Alignment explanation
Indices: 770781--770844 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
770771 GCCCACTATA
* *
770781 TGCACTAGGTAACCTTTAGTTC
1 TGCACTAGGTATCCTTTAGTAC
770803 TGCACTAGGTATCCTTTAGTAC
1 TGCACTAGGTATCCTTTAGTAC
* *
770825 TGAACTATGTATCCTTTAGT
1 TGCACTAGGTATCCTTTAGT
770845 GCTAATGTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (22 bp):
TGCACTAGGTATCCTTTAGTAC
Found at i:773552 original size:29 final size:30
Alignment explanation
Indices: 773492--773552 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
773482 TTTAGTTTAC
* *
773492 AAACTTTACAAACTTTATACTTTAGCCCCT
1 AAACTTTACAAAATTTATACTTTAGCCACT
* *
773522 AAACTTT-CAAAATTTATATTTTAGTCACT
1 AAACTTTACAAAATTTATACTTTAGCCACT
773551 AA
1 AA
773553 CTAAAATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.39
Consensus pattern (30 bp):
AAACTTTACAAAATTTATACTTTAGCCACT
Found at i:775413 original size:53 final size:54
Alignment explanation
Indices: 775298--775413 Score: 119
Period size: 53 Copynumber: 2.2 Consensus size: 54
775288 TTATATGTAC
* * *
775298 TTTCGACACTATGTGTGCAACCCACATAATTCATAATGAGTTTATGAATTACCA
1 TTTCGGCACTATGTGTGCAACCCACAGAATTCATAATAAGTTTATGAATTACCA
* ** ** * * *
775352 TATC-GCACTATGTGTGCAATTCATGGAATT-ATAATAAGTTTGTGAATTTCCT
1 TTTCGGCACTATGTGTGCAACCCACAGAATTCATAATAAGTTTATGAATTACCA
775404 TTTCGGCACT
1 TTTCGGCACT
775414 TCGGTACAAT
Statistics
Matches: 49, Mismatches: 12, Indels: 3
0.77 0.19 0.05
Matches are distributed among these distances:
52 21 0.43
53 25 0.51
54 3 0.06
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (54 bp):
TTTCGGCACTATGTGTGCAACCCACAGAATTCATAATAAGTTTATGAATTACCA
Found at i:780363 original size:15 final size:17
Alignment explanation
Indices: 780343--780374 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
780333 TTTATCGAAT
780343 AAAAATT-CT-TTTTGG
1 AAAAATTACTATTTTGG
780358 AAAAATTACTATTTTGG
1 AAAAATTACTATTTTGG
780375 TCCCTAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 2 0.13
17 6 0.40
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (17 bp):
AAAAATTACTATTTTGG
Found at i:786463 original size:25 final size:26
Alignment explanation
Indices: 786413--786513 Score: 93
Period size: 25 Copynumber: 4.0 Consensus size: 26
786403 ATATTTCACG
* * *
786413 TATG-GTGC-AATCTTACGAGGAACT
1 TATGAGTGCAAATCCTATGAGGCACT
786437 TATGAGTGCAAATCCTATGAGGC-CT
1 TATGAGTGCAAATCCTATGAGGCACT
* *
786462 TACGAGCGCAAATCCTATGAGGCACT
1 TATGAGTGCAAATCCTATGAGGCACT
* * * *
786488 TTTGAGTAC-AATACTATGAGGAACT
1 TATGAGTGCAAATCCTATGAGGCACT
786513 T
1 T
786514 TCTAGTGCAA
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
24 4 0.06
25 42 0.67
26 17 0.27
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
TATGAGTGCAAATCCTATGAGGCACT
Found at i:786514 original size:25 final size:25
Alignment explanation
Indices: 786476--786529 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
786466 AGCGCAAATC
*
786476 CTATGAGGCACTTT-TGAGTACAATA
1 CTATGAGGAACTTTCT-AGTACAATA
*
786501 CTATGAGGAACTTTCTAGTGCAATA
1 CTATGAGGAACTTTCTAGTACAATA
786526 CTAT
1 CTAT
786530 ATCCATGAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 25 0.96
26 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (25 bp):
CTATGAGGAACTTTCTAGTACAATA
Found at i:787591 original size:19 final size:19
Alignment explanation
Indices: 787567--787617 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
787557 CAAGCCTGGA
*
787567 GTGCATCGATGCATGGTTT
1 GTGCATCGATACATGGTTT
*
787586 GTGCATCGGTACATGGTTT
1 GTGCATCGATACATGGTTT
*
787605 GTGCATCGTTACA
1 GTGCATCGATACA
787618 CAAAATGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.35
Consensus pattern (19 bp):
GTGCATCGATACATGGTTT
Found at i:794411 original size:115 final size:115
Alignment explanation
Indices: 794192--794408 Score: 253
Period size: 115 Copynumber: 1.9 Consensus size: 115
794182 TTTTCAATAC
*
794192 TTTCAAATTTCATTTTTGAAAGCTCAAAATCCTTCTTCAAGATTTCATTTTGATTTTCAAAATCC
1 TTTCAAATTTCATTTTTGAAAGCTCAAAATCCTTCTTCAACATTTCATTTTGATTTTCAAAATCC
* * * *
794257 GTTTTCGTTTCTAGAAGAATTTTGTTTAATTTGAAAATTTCTTTTCAAAGT
66 GTTTTAGTTTCAAGAAGAATATTGTTTAATAT-AAAATTTCTTTTCAAAGT
* * * * *
794308 TTTC-AATTTCGTTTTTGAAAGCTCTAACT-CTTTTCTCAACATTTCATTTTGATTTTCTAAATC
1 TTTCAAATTTCATTTTTGAAAGCTCAAAATCCTTCT-TCAACATTTCATTTTGATTTTCAAAATC
*
794371 TGTTTTAGTTTTCAAAGAAG-ATCATT-TTTAGATATAAA
65 CGTTTTAG-TTTC-AAGAAGAAT-ATTGTTTA-ATATAAA
794409 TTTAGAAATC
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
114 4 0.05
115 54 0.64
116 17 0.20
117 10 0.12
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.48
Consensus pattern (115 bp):
TTTCAAATTTCATTTTTGAAAGCTCAAAATCCTTCTTCAACATTTCATTTTGATTTTCAAAATCC
GTTTTAGTTTCAAGAAGAATATTGTTTAATATAAAATTTCTTTTCAAAGT
Found at i:800165 original size:23 final size:23
Alignment explanation
Indices: 800138--800258 Score: 94
Period size: 23 Copynumber: 5.4 Consensus size: 23
800128 CATCTTCTAT
*
800138 AACCCAAACCTGAACTGAACCTA
1 AACCCAAACCTGAACTGAACCCA
*
800161 AACCCAAA-C----CTGAACCCG
1 AACCCAAACCTGAACTGAACCCA
* * *
800179 AACCCGAACCCGAATCTGAACCCG
1 AACCCAAACCTGAA-CTGAACCCA
*
800203 AACCCAAACC-AAACTTGAACCCA
1 AACCCAAACCTGAAC-TGAACCCA
*
800226 AACCCAAACCTAAACCT-AACCCA
1 AACCCAAACCTGAA-CTGAACCCA
*
800249 AACCCGAACC
1 AACCCAAACC
800259 CACATCCAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 18
0.77 0.07 0.17
Matches are distributed among these distances:
18 14 0.17
19 1 0.01
22 2 0.02
23 42 0.51
24 22 0.27
25 1 0.01
ACGTcount: A:0.42, C:0.41, G:0.08, T:0.08
Consensus pattern (23 bp):
AACCCAAACCTGAACTGAACCCA
Found at i:800175 original size:18 final size:18
Alignment explanation
Indices: 800173--800276 Score: 77
Period size: 18 Copynumber: 5.9 Consensus size: 18
800163 CCCAAACCTG
* *
800173 AACCCGAACCCGAACCCG
1 AACCCAAACCCGAACCCA
* **
800191 AATCTGAACCCGAACCCA
1 AACCCAAACCCGAACCCA
**
800209 AA-CCAAACTTGAACCCA
1 AACCCAAACCCGAACCCA
* * *
800226 AACCCAAA-CCTAAACCT
1 AACCCAAACCCGAACCCA
800243 AACCCAAACCCGAACCCA
1 AACCCAAACCCGAACCCA
* * *
800261 CATCCAAACCTGAACC
1 AACCCAAACCCGAACC
800277 AAAAAAATCC
Statistics
Matches: 66, Mismatches: 18, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
17 25 0.38
18 41 0.62
ACGTcount: A:0.41, C:0.43, G:0.08, T:0.08
Consensus pattern (18 bp):
AACCCAAACCCGAACCCA
Found at i:800176 original size:12 final size:12
Alignment explanation
Indices: 800138--800260 Score: 90
Period size: 12 Copynumber: 10.5 Consensus size: 12
800128 CATCTTCTAT
800138 AACCCAAACCTG
1 AACCCAAACCTG
** *
800150 AA-CTGAACCTA
1 AACCCAAACCTG
800161 AACCCAAACCTG
1 AACCCAAACCTG
* *
800173 AACCCGAACCCG
1 AACCCAAACCTG
* *
800185 AACCCGAATCTG
1 AACCCAAACCTG
* *
800197 AACCCGAACC-C
1 AACCCAAACCTG
* *
800208 AAACCAAACTTG
1 AACCCAAACCTG
**
800220 AACCCAAACCCA
1 AACCCAAACCTG
*
800232 AACCTAAACCT-
1 AACCCAAACCTG
*
800243 AACCCAAACCCG
1 AACCCAAACCTG
800255 AACCCA
1 AACCCA
800261 CATCCAAACC
Statistics
Matches: 84, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
11 24 0.29
12 60 0.71
ACGTcount: A:0.42, C:0.41, G:0.08, T:0.08
Consensus pattern (12 bp):
AACCCAAACCTG
Found at i:800181 original size:6 final size:6
Alignment explanation
Indices: 800161--800212 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
800151 ACTGAACCTA
* * * * *
800161 AACCCA AACCTG AACCCG AACCCG AACCCG AATCTG AACCCG AACCCA
1 AACCCG AACCCG AACCCG AACCCG AACCCG AACCCG AACCCG AACCCG
800209 AACC
1 AACC
800213 AAACTTGAAC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.38, C:0.44, G:0.12, T:0.06
Consensus pattern (6 bp):
AACCCG
Found at i:800224 original size:17 final size:17
Alignment explanation
Indices: 800197--800276 Score: 79
Period size: 18 Copynumber: 4.6 Consensus size: 17
800187 CCCGAATCTG
*
800197 AACCCGAACCCAAACCA
1 AACCTGAACCCAAACCA
*
800214 AACTTGAACCCAAACCCA
1 AACCTGAACCCAAA-CCA
* * *
800232 AACCTAAACCTAACCCA
1 AACCTGAACCCAAACCA
* *
800249 AACCCGAACCCACATCCA
1 AACCTGAACCCA-AACCA
800267 AACCTGAACC
1 AACCTGAACC
800277 AAAAAAATCC
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
17 24 0.48
18 26 0.52
ACGTcount: A:0.44, C:0.44, G:0.05, T:0.07
Consensus pattern (17 bp):
AACCTGAACCCAAACCA
Found at i:800229 original size:6 final size:6
Alignment explanation
Indices: 800155--800270 Score: 56
Period size: 6 Copynumber: 19.7 Consensus size: 6
800145 ACCTGAACTG
* ** * * * * ** *
800155 AACCTA AACCCA AACCTG AACCCG AACCCG AACCCG AATCTG AACCCG
1 AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA
*** * *
800203 AACCCA AA-CCA AACTTG AACCCA AACCCA AACCTA AA-CCT AACCCA
1 AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA
* * *
800249 AACCCG AACCCA CATCCA AACC
1 AACCCA AACCCA AACCCA AACC
800271 TGAACCAAAA
Statistics
Matches: 83, Mismatches: 25, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
5 8 0.10
6 75 0.90
ACGTcount: A:0.42, C:0.43, G:0.07, T:0.08
Consensus pattern (6 bp):
AACCCA
Found at i:803986 original size:13 final size:12
Alignment explanation
Indices: 803918--803986 Score: 59
Period size: 13 Copynumber: 5.3 Consensus size: 12
803908 GTTCAATGCC
803918 AATAATTTTATT
1 AATAATTTTATT
*
803930 AATAATGTT-TT
1 AATAATTTTATT
*
803941 ATATAATTTACATTT
1 A-ATAATTT-TA-TT
803956 AAATAATTTTATT
1 -AATAATTTTATT
803969 AAATAATTTTATAT
1 -AATAATTTTAT-T
803983 AATA
1 AATA
803987 TGTCTATTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
11 3 0.06
12 14 0.30
13 18 0.38
14 2 0.04
15 9 0.19
16 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (12 bp):
AATAATTTTATT
Found at i:808458 original size:18 final size:19
Alignment explanation
Indices: 808425--808462 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
808415 ACAAAGAAAC
*
808425 ATAAATAAGTAAATGAATA
1 ATAAATAAGCAAATGAATA
808444 ATAAATAA-CAAATGAATA
1 ATAAATAAGCAAATGAATA
808462 A
1 A
808463 AACAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (19 bp):
ATAAATAAGCAAATGAATA
Found at i:811084 original size:17 final size:18
Alignment explanation
Indices: 811047--811087 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
811037 ATATTATGTA
*
811047 TTTAATTTATTTAAGTAT
1 TTTACTTTATTTAAGTAT
811065 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGTAT
811082 TTTACT
1 TTTACT
811088 AATATAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTACTTTATTTAAGTAT
Found at i:813339 original size:26 final size:24
Alignment explanation
Indices: 813268--813339 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 24
813258 TTATATTTGT
813268 ATTTACTTTATTTTGTTAAATTGTA
1 ATTTACTTTATTTTGTTAAATT-TA
*
813293 ATTT--TTTATTATT-TCT-CATTTA
1 ATTTACTTTATT-TTGT-TAAATTTA
813315 ATACTTACTTTATTTTGTTAAATTT
1 AT--TTACTTTATTTTGTTAAATTT
813340 GTTGGACTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 15
0.69 0.04 0.28
Matches are distributed among these distances:
22 4 0.11
23 10 0.27
24 5 0.14
25 7 0.19
26 11 0.30
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTTACTTTATTTTGTTAAATTTA
Found at i:815875 original size:50 final size:50
Alignment explanation
Indices: 815821--815941 Score: 179
Period size: 51 Copynumber: 2.4 Consensus size: 50
815811 AGATACATAG
* *
815821 ATATAGTGCGGTTCAGGGGGGCGCTATACCCCACGTGGCACCAAATCAGC
1 ATATAGCGCGGTTCAGGGGGGCGCTATACCCCACATGGCACCAAATCAGC
* *
815871 ATATAGCGCGGTACAAGGGGCGCGCTATACCCCACATGGCACCAAATCAGC
1 ATATAGCGCGGTTC-AGGGGGGCGCTATACCCCACATGGCACCAAATCAGC
* *
815922 GTATAGCGCGGGTCAGGGGG
1 ATATAGCGCGGTTCAGGGGG
815942 CGCGATTTTC
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 17 0.27
51 45 0.73
ACGTcount: A:0.25, C:0.27, G:0.32, T:0.16
Consensus pattern (50 bp):
ATATAGCGCGGTTCAGGGGGGCGCTATACCCCACATGGCACCAAATCAGC
Found at i:816021 original size:30 final size:29
Alignment explanation
Indices: 815959--816021 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
815949 TTCTGCTACG
* *
815959 GGTGTTAGATCGGGAAATATAATCTGACC
1 GGTGTTAGATCGGGAAATATAACCGGACC
*
815988 GGTGTTAGATCGGTAAATAT-ACCGGCCACC
1 GGTGTTAGATCGGGAAATATAACCGG--ACC
816018 GGTG
1 GGTG
816022 ATATTTCGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 3 0.10
29 19 0.66
30 7 0.24
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (29 bp):
GGTGTTAGATCGGGAAATATAACCGGACC
Found at i:818470 original size:43 final size:43
Alignment explanation
Indices: 818409--818512 Score: 145
Period size: 43 Copynumber: 2.4 Consensus size: 43
818399 AAAAAATATA
* * *
818409 TAGGTAATAAGTTGGAAAGCTGGTAATAGCTCCAGCGTAGTTT
1 TAGGTAATAAGTTGGAAAGCTGGTAATAGCCCCAACATAGTTT
* *
818452 TAGGTAATAAGTTAGAAAGTTGGTAATAGCCCCAACATAGTTT
1 TAGGTAATAAGTTGGAAAGCTGGTAATAGCCCCAACATAGTTT
* *
818495 TAGGAAAAAAGTTGGAAA
1 TAGGTAATAAGTTGGAAA
818513 ATTCCAACAC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.28
Consensus pattern (43 bp):
TAGGTAATAAGTTGGAAAGCTGGTAATAGCCCCAACATAGTTT
Found at i:820522 original size:7 final size:8
Alignment explanation
Indices: 820498--820524 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
820488 TTTGGTTCAG
820498 TTCGGTTT
1 TTCGGTTT
820506 TTCGGTTT
1 TTCGGTTT
820514 TTCGGTTT
1 TTCGGTTT
820522 TTC
1 TTC
820525 AATGAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.15, G:0.22, T:0.63
Consensus pattern (8 bp):
TTCGGTTT
Found at i:823088 original size:21 final size:22
Alignment explanation
Indices: 823063--823103 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
823053 TAATTTTGTG
*
823063 TTTTATTATAAAAA-ATAAAAT
1 TTTTATTACAAAAAGATAAAAT
823084 TTTTATTACAAAAAGATAAA
1 TTTTATTACAAAAAGATAAA
823104 TAAATATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (22 bp):
TTTTATTACAAAAAGATAAAAT
Found at i:825182 original size:31 final size:31
Alignment explanation
Indices: 825144--825233 Score: 112
Period size: 31 Copynumber: 3.0 Consensus size: 31
825134 GAGTCGAGGG
*
825144 TTACCTATGTCTTTCGAGACATATGGATAGT
1 TTACCTATGTCTTTCGAGACATATGGATAGA
* *
825175 TTACCTATGTCTTTCGGGACATATGGACA-A
1 TTACCTATGTCTTTCGAGACATATGGATAGA
* * *
825205 TTACCTATATATTTGGA-ACATATGGATAG
1 TTACCTATGTCTTTCGAGACATATGGATAG
825234 GTCTTCGGGA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
29 10 0.20
30 13 0.26
31 27 0.54
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (31 bp):
TTACCTATGTCTTTCGAGACATATGGATAGA
Found at i:831386 original size:22 final size:24
Alignment explanation
Indices: 831358--831409 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
831348 TTTGAAATTA
*
831358 CTCCCCCCTT-AC-TTTAACACTT
1 CTCCCCCCTTAACACTTAACACTT
831380 CT-CCCCCTTAACACTTAACACTT
1 CTCCCCCCTTAACACTTAACACTT
*
831403 TTCCCCC
1 CTCCCCC
831410 TTTTGTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 7 0.28
22 4 0.16
23 10 0.40
24 4 0.16
ACGTcount: A:0.19, C:0.48, G:0.00, T:0.33
Consensus pattern (24 bp):
CTCCCCCCTTAACACTTAACACTT
Found at i:837953 original size:15 final size:15
Alignment explanation
Indices: 837928--837970 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
837918 GAAATTTTTT
837928 AAAAATGTAAAAAAAA
1 AAAAAT-TAAAAAAAA
837944 AAAAATTAAAGAAAAA
1 AAAAATTAAA-AAAAA
*
837960 AACAA-TAAAAA
1 AAAAATTAAAAA
837971 TGCTAAAAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 2 0.08
15 8 0.32
16 15 0.60
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (15 bp):
AAAAATTAAAAAAAA
Found at i:839325 original size:38 final size:37
Alignment explanation
Indices: 839233--839382 Score: 171
Period size: 38 Copynumber: 4.1 Consensus size: 37
839223 AAAAAAAAGC
* * * ** *
839233 TATATATAAATTTTC-CAAACTGTTTTTTAAACTATA
1 TATATATATATTTTCAAAAAATGTTTTCAAAATTATA
* *
839269 T-TATATATATTTTC-AAAAACGTTTTAAAAATGTATA
1 TATATATATATTTTCAAAAAATGTTTTCAAAAT-TATA
*
839305 TATATATATATATTCAAAAAATGTTTTCAAAATTATA
1 TATATATATATTTTCAAAAAATGTTTTCAAAATTATA
*
839342 TATTATATATATTTTCAAAAAATGTTTTCAAAACTATA
1 TA-TATATATATTTTCAAAAAATGTTTTCAAAATTATA
839380 TAT
1 TAT
839383 TCAAAAATGT
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
35 23 0.23
36 6 0.06
37 19 0.19
38 50 0.51
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.45
Consensus pattern (37 bp):
TATATATATATTTTCAAAAAATGTTTTCAAAATTATA
Found at i:839383 original size:38 final size:38
Alignment explanation
Indices: 839265--839871 Score: 381
Period size: 37 Copynumber: 16.4 Consensus size: 38
839255 TTTTTTAAAC
* *
839265 TATATTATATATATTTTC-AAAAACGTTTT-AAAAATG
1 TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
* *
839301 TATATATATATATATATTCAAAAAATGTTTTCAAAATTA
1 TATAT-TATATATATTTTCAAAAAATGTTTTCAAAAATA
*
839340 TATATTATATATATTTTCAAAAAATGTTTTCAAAACTA
1 TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
* * * * * * *
839378 TATATTCAAAAATGTTTT-AAAAACTATATT---ATATA
1 TATATT-ATATATATTTTCAAAAAATGTTTTCAAAAATA
* * * * *
839413 TAT-TTCA-AAAAAGTTTTCAAAACACTATATTAT-ATAAAT-
1 TATATT-ATATATA-TTTTCAAAA-A--ATGTTTTCAAAAATA
* * * * * * * *
839452 TTTCA-AAAAAATGTTTTCAAAACTATATTTTCAAAAATG
1 TAT-ATTATATATATTTTCAAAA-AATGTTTTCAAAAATA
* * * *
839491 T-TTTTAAACTATATTTTCAAAAATTGTTTTCAAAACTA
1 TATATTATA-TATATTTTCAAAAAATGTTTTCAAAAATA
*
839529 TATATTATATATATTTTTTCAAAAAA-GTTTTCAAAACTA
1 TATATTATATATA--TTTTCAAAAAATGTTTTCAAAAATA
*
839568 TATATTATATATATTTTC-AAAAATGTTTTCAAAACTA
1 TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
* * * *
839605 TATATTACAAATGTTTTC--AAAATG-TTTCAAAACTA
1 TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
* * *
839640 TATATTATAAATATTTTC--AAAA-CTTTTCAAAACTA
1 TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
* * * * * *
839675 TACATCATATATGTTTT-TAAAAATATTTTCAAAATTA
1 TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
* * *
839712 TATATTATATATATTTTC-AAAAATGCTTTCCAAACTA
1 TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
** *
839749 TATATTATATATATTTTC-AAAAATACTTTCAAAACTA
1 TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
* * *
839786 TATATTATATATGTTTT-TAAAAATGTTTTCAAAACTA
1 TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
* ** *
839823 TATATTCTA-A-ATTTT-ATAAAAA--AATTCAAAACTA
1 TATATTATATATATTTTCA-AAAAATGTTTTCAAAAATA
839857 TATATTATATATATT
1 TATATTATATATATT
839872 ATGTATATAT
Statistics
Matches: 471, Mismatches: 69, Indels: 62
0.78 0.11 0.10
Matches are distributed among these distances:
33 3 0.01
34 26 0.06
35 70 0.15
36 30 0.06
37 167 0.35
38 85 0.18
39 74 0.16
40 16 0.03
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.44
Consensus pattern (38 bp):
TATATTATATATATTTTCAAAAAATGTTTTCAAAAATA
Found at i:839470 original size:14 final size:14
Alignment explanation
Indices: 839451--839525 Score: 50
Period size: 14 Copynumber: 5.6 Consensus size: 14
839441 ATTATATAAA
839451 TTTTCAAAAAAATG
1 TTTTCAAAAAAATG
** *
839465 TTTTCAAAACTATA
1 TTTTCAAAAAAATG
839479 TTTTC--AAAAATG
1 TTTTCAAAAAAATG
* ** *
839491 TTTT-TAAACTATA
1 TTTTCAAAAAAATG
*
839504 TTTTC-AAAAATTG
1 TTTTCAAAAAAATG
839517 TTTTCAAAA
1 TTTTCAAAA
839526 CTATATATTA
Statistics
Matches: 44, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
12 8 0.18
13 17 0.39
14 19 0.43
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (14 bp):
TTTTCAAAAAAATG
Found at i:839499 original size:25 final size:26
Alignment explanation
Indices: 839458--839626 Score: 140
Period size: 25 Copynumber: 6.6 Consensus size: 26
839448 AAATTTTCAA
839458 AAAAATGTTTTCAAAACTATATTTTC
1 AAAAATGTTTTCAAAACTATATTTTC
*
839484 AAAAATGTTTT-TAAACTATATTTTC
1 AAAAATGTTTTCAAAACTATATTTTC
839509 AAAAATTGTTTTCAAAACTATATATTAT-
1 AAAAA-TGTTTTCAAAACTATAT-TT-TC
* * *
839537 ATATATTTTTTCAAAA--A-AGTTTTC
1 AAAAATGTTTTCAAAACTATA-TTTTC
* * *
839561 AAAACTATATATT--ATA-TATATTTTC
1 AAAA--ATGTTTTCAAAACTATATTTTC
*
839586 AAAAATGTTTTCAAAACTATATATT-
1 AAAAATGTTTTCAAAACTATATTTTC
*
839611 ACAAATGTTTTCAAAA
1 AAAAATGTTTTCAAAA
839627 TGTTTCAAAA
Statistics
Matches: 115, Mismatches: 15, Indels: 27
0.73 0.10 0.17
Matches are distributed among these distances:
23 6 0.05
24 7 0.06
25 47 0.41
26 30 0.26
27 19 0.17
28 5 0.04
29 1 0.01
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.44
Consensus pattern (26 bp):
AAAAATGTTTTCAAAACTATATTTTC
Found at i:839507 original size:13 final size:13
Alignment explanation
Indices: 839465--839511 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
839455 CAAAAAAATG
839465 TTTTCAAAACTATA
1 TTTTC-AAACTATA
* *
839479 TTTTCAAA-AATG
1 TTTTCAAACTATA
*
839491 TTTTTAAACTATA
1 TTTTCAAACTATA
839504 TTTTCAAA
1 TTTTCAAA
839512 AATTGTTTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
12 9 0.35
13 12 0.46
14 5 0.19
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (13 bp):
TTTTCAAACTATA
Found at i:839579 original size:37 final size:37
Alignment explanation
Indices: 839500--839871 Score: 413
Period size: 37 Copynumber: 10.2 Consensus size: 37
839490 GTTTTTAAAC
*
839500 TATATTTTCAAAAATTGTTTTCAAAACTATATATTATA
1 TATATTTTCAAAAA-AGTTTTCAAAACTATATATTATA
839538 TATATTTTTTCAAAAAAGTTTTCAAAACTATATATTATA
1 TATA--TTTTCAAAAAAGTTTTCAAAACTATATATTATA
* *
839577 TATATTTTCAAAAATGTTTTCAAAACTATATATTACA
1 TATATTTTCAAAAAAGTTTTCAAAACTATATATTATA
* * *
839614 AATGTTTTC-AAAATG-TTTCAAAACTATATATTATA
1 TATATTTTCAAAAAAGTTTTCAAAACTATATATTATA
* * * *
839649 AATATTTTC--AAAACTTTTCAAAACTATACATCATA
1 TATATTTTCAAAAAAGTTTTCAAAACTATATATTATA
* * *
839684 TATGTTTTTAAAAATA-TTTTCAAAATTATATATTATA
1 TATATTTTCAAAAA-AGTTTTCAAAACTATATATTATA
* * *
839721 TATATTTTCAAAAATGCTTTCCAAACTATATATTATA
1 TATATTTTCAAAAAAGTTTTCAAAACTATATATTATA
*
839758 TATATTTTCAAAAATA-CTTTCAAAACTATATATTATA
1 TATATTTTCAAAAA-AGTTTTCAAAACTATATATTATA
* * * *
839795 TATGTTTTTAAAAATGTTTTCAAAACTATATATTCTA
1 TATATTTTCAAAAAAGTTTTCAAAACTATATATTATA
**
839832 -A-ATTTT-ATAAAAA-AATTCAAAACTATATATTATA
1 TATATTTTCA-AAAAAGTTTTCAAAACTATATATTATA
839866 TATATT
1 TATATT
839872 ATGTATATAT
Statistics
Matches: 287, Mismatches: 35, Indels: 26
0.82 0.10 0.07
Matches are distributed among these distances:
34 22 0.08
35 60 0.21
36 10 0.03
37 154 0.54
38 5 0.02
39 26 0.09
40 10 0.03
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (37 bp):
TATATTTTCAAAAAAGTTTTCAAAACTATATATTATA
Found at i:845085 original size:56 final size:56
Alignment explanation
Indices: 844983--846294 Score: 1794
Period size: 56 Copynumber: 23.7 Consensus size: 56
844973 GACACTATGC
* * **
844983 GTGC-AAA-CTAAGAAATTCATAATGAGTTTGTAAATTTTTGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * *
845037 GTGCAAAAGCTAAGAAATTCATAATGAGTTAATGAACTTCCGTGTGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * *
845093 GTGAAAAAGATAAGAAATTCATAATGAGTTTATGAATTTCCGTATGTGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* *
845149 GTGCAAAA-CTAAGAAATTCATAATGAGTTTATGAATTTTCATATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* *
845204 GTGTAAAAGATAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
*
845260 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* *
845316 GTGCGAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCATATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * * *
845372 CTACAAAAG-TAAAAAATTCATAATGAGTTTAGGAATTTTCGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845427 GTGCAAAA-CTAAGAAAATCAAAATAAGTTTATGAATTT-CGTAT-GGCATTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * *
845480 GTGCAAAAGATAACAAATTCATAATGAGTTTATGAATTTCCATATGGGCACTTCT-T
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTT-TGT
* * * * *
845536 GAGGAAAAGCTAAGAAATTCACAATGAGTTTATGAATTTCCATATGGGCACTTCGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845592 GTGGAAAAGCTAAGAAATTCACAATTAGTTTATGGATTTCCGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845648 GTGCAAAA-CTAAGAAATTCATAATGTGTTTATGAATTTCCGTATGAGAACTTTAT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845703 GTGCAAAAGCAAAGAAATTCATAATGAATTTATGTATTTCCATATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* *
845759 GTGCAAAA-CTAAGAAATTCATAATGAGATTATGAATTTTCGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * * *
845814 TTGCAAAACCTAAGAAATTCAAAAAGAGTTTATGAATTTGCGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
**
845870 GTGCAAAAGCTAAGAAATTCATAACAAGTTTATGAATTTCCGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * *
845926 GTGCGAAA-CTAAGAAATTCAAAATGAGTTTATGAATTTCTGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845981 GTGCAAAAGCTAAGAAATTTATAATGAGTTTATGAGTTTACGTATGGGTACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * * *
846037 GTGCAAAA-CTATGAAATTTATAATGAGTTTATAAATTTTCGTATGGGCACTTTGC
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * *
846092 GTG-AAATA-CTAA-AAATTTATAATGAGTTTATGAATTTCTGTATGGGCACTTTGC
1 GTGCAAA-AGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * *
846146 GTACAAAA-CTAAGAAATTCATATTGAGTTTATGAATTTTCGTATGGGCACTTTGT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* *
846201 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTACGTATGGGCACTTTCT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* *
846257 GTG-AAAAACTAAGAAATTCATAATAAGTTTATGAATTT
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTT
846295 ATGTATTGGT
Statistics
Matches: 1114, Mismatches: 128, Indels: 31
0.88 0.10 0.02
Matches are distributed among these distances:
53 17 0.02
54 83 0.07
55 403 0.36
56 610 0.55
57 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (56 bp):
GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
Found at i:845214 original size:111 final size:112
Alignment explanation
Indices: 844983--846294 Score: 1796
Period size: 111 Copynumber: 11.8 Consensus size: 112
844973 GACACTATGC
* * **
844983 GTGC-AAA-CTAAGAAATTCATAATGAGTTTGTAAATTTTTGTATGGGCACTTTGTGTGCAAAAG
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
* * * *
845046 CTAAGAAATTCATAATGAGTTAATGAACTTCCGTGTGGGCACTTTGT
66 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
* * *
845093 GTGAAAAAGATAAGAAATTCATAATGAGTTTATGAATTTCCGTATGTGCACTTTGTGTGCAAAA-
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
*
845157 CTAAGAAATTCATAATGAGTTTATGAATTTTCATATGGGCACTTTGT
66 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
* *
845204 GTGTAAAAGATAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
845269 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
66 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
* * * *
845316 GTGCGAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCATATGGGCACTTTGTCTACAAAAG
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
* *
845381 -TAAAAAATTCATAATGAGTTTAGGAATTTTCGTATGGGCACTTTGT
66 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
* * * *
845427 GTGCAAAA-CTAAGAAAATCAAAATAAGTTTATGAATTT-CGTAT-GGCATTTTGTGTGCAAAAG
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
* * * *
845489 ATAACAAATTCATAATGAGTTTATGAATTTCCATATGGGCACTTCT-T
66 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTT-TGT
* * * * * *
845536 GAGGAAAAGCTAAGAAATTCACAATGAGTTTATGAATTTCCATATGGGCACTTCGTGTGGAAAAG
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
* * * *
845601 CTAAGAAATTCACAATTAGTTTATGGATTTCCGTATGGGCACTTTGT
66 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
* * * *
845648 GTGCAAAA-CTAAGAAATTCATAATGTGTTTATGAATTTCCGTATGAGAACTTTATGTGCAAAAG
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
* * * * *
845712 CAAAGAAATTCATAATGAATTTATGTATTTCCATATGGGCACTTTGT
66 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
* * * *
845759 GTGCAAAA-CTAAGAAATTCATAATGAGATTATGAATTTTCGTATGGGCACTTTGTTTGCAAAAC
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
* * *
845823 CTAAGAAATTCAAAAAGAGTTTATGAATTTGCGTATGGGCACTTTGT
66 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
** *
845870 GTGCAAAAGCTAAGAAATTCATAACAAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCGAAA-
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
*
845934 CTAAGAAATTCAAAATGAGTTTATGAA-TTTCTGTATGGGCACTTTGT
66 CTAAGAAATTCATAATGAGTTTATGAATTTTC-GTATGGGCACTTTGT
* * * *
845981 GTGCAAAAGCTAAGAAATTTATAATGAGTTTATGAGTTTACGTATGGGTACTTTGTGTGCAAAA-
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
* * * *
846045 CTATGAAATTTATAATGAGTTTATAAATTTTCGTATGGGCACTTTGC
66 CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
* * * *
846092 GTG-AAATA-CTAA-AAATTTATAATGAGTTTATGAATTTCTGTATGGGCACTTTGCGTACAAAA
1 GTGCAAA-AGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAA
*
846154 -CTAAGAAATTCATATTGAGTTTATGAATTTTCGTATGGGCACTTTGT
65 GCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
* * *
846201 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTACGTATGGGCACTTTCTGTG-AAAAA
1 GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
*
846265 CTAAGAAATTCATAATAAGTTTATGAATTT
66 CTAAGAAATTCATAATGAGTTTATGAATTT
846295 ATGTATTGGT
Statistics
Matches: 1065, Mismatches: 120, Indels: 33
0.87 0.10 0.03
Matches are distributed among these distances:
108 16 0.02
109 140 0.13
110 79 0.07
111 562 0.53
112 268 0.25
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (112 bp):
GTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
Found at i:845276 original size:167 final size:166
Alignment explanation
Indices: 844983--846294 Score: 1803
Period size: 167 Copynumber: 7.9 Consensus size: 166
844973 GACACTATGC
* * **
844983 GTGC-AAACTAAGAAATTCATAATGAGTTTGTAAATTTTTGTATGGGCACTTTGTGTGCAAAAGC
1 GTGCAAAACTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAGC
* * * * *
845047 TAAGAAATTCATAATGAGTTAATGAACTTCCGTGTGGGCACTTTGTGTGAAAAAGATAAGAAATT
66 TAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAA-CTAAGAAATT
*
845112 CATAATGAGTTTATGAATTTCCGTATGTGCACTTTGT
130 CATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845149 GTGCAAAACTAAGAAATTCATAATGAGTTTATGAATTTTCATATGGGCACTTTGTGTGTAAAAGA
1 GTGCAAAACTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAGC
845214 TAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAGCTAAGAAATT
66 TAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAA-CTAAGAAATT
*
845279 CATAATGAGTTTATGAATTTTCGTATGGGCACTTTGT
130 CATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845316 GTGCGAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCATATGGGCACTTTGTCTACAAAAG
1 GTGC-AAAACTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
* * * *
845381 -TAAAAAATTCATAATGAGTTTAGGAATTTTCGTATGGGCACTTTGTGTGCAAAACTAAGAAAAT
65 CTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAACTAAGAAATT
* * *
845445 CAAAATAAGTTTATGAATTT-CGTAT-GGCATTTTGT
130 CATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * * *
845480 GTGCAAAAGATAACAAATTCATAATGAGTTTATGAATTTCCATATGGGCACTTCT-TGAGGAAAA
1 GTGCAAAA-CTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTT-TGTGTGCAAAA
* * * *
845544 GCTAAGAAATTCACAATGAGTTTATGAATTTCCATATGGGCACTTCGTGTGGAAAAGCTAAGAAA
64 GCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAA-CTAAGAAA
* * *
845609 TTCACAATTAGTTTATGGATTTCCGTATGGGCACTTTGT
128 TTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845648 GTGCAAAACTAAGAAATTCATAATGTGTTTATGAATTTCCGTATGAGAACTTTATGTGCAAAAGC
1 GTGCAAAACTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAGC
* * * *
845713 AAAGAAATTCATAATGAATTTATGTATTTCCATATGGGCACTTTGTGTGCAAAACTAAGAAATTC
66 TAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAACTAAGAAATTC
* *
845778 ATAATGAGATTATGAATTTTCGTATGGGCACTTTGT
131 ATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845814 TTGCAAAACCTAAGAAATTCAAAAAGAGTTTATGAATTTGCGTATGGGCACTTTGTGTGCAAAAG
1 GTGCAAAA-CTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
** *
845879 CTAAGAAATTCATAACAAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCGAAACTAAGAAATT
65 CTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAACTAAGAAATT
* *
845944 CAAAATGAGTTTATGAATTTCTGTATGGGCACTTTGT
130 CATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * * *
845981 GTGCAAAAGCTAAGAAATTTATAATGAGTTTATGAGTTTACGTATGGGTACTTTGTGTGCAAAA-
1 GTGCAAAA-CTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAG
* * * * *
846045 CTATGAAATTTATAATGAGTTTATAAATTTTCGTATGGGCACTTTGCGTG-AAATACTAA-AAAT
65 CTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAA-ACTAAGAAAT
* * *
846108 TTATAATGAGTTTATGAATTTCTGTATGGGCACTTTGC
129 TCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
* * *
846146 GTACAAAACTAAGAAATTCATATTGAGTTTATGAATTTTCGTATGGGCACTTTGTGTGCAAAAGC
1 GTGCAAAACTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAGC
* * *
846211 TAAGAAATTCATAATGAGTTTATGAATTTACGTATGGGCACTTTCTGTGAAAAACTAAGAAATTC
66 TAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAACTAAGAAATTC
*
846276 ATAATAAGTTTATGAATTT
131 ATAATGAGTTTATGAATTT
846295 ATGTATTGGT
Statistics
Matches: 1017, Mismatches: 115, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
163 3 0.00
164 111 0.11
165 150 0.15
166 181 0.18
167 500 0.49
168 72 0.07
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (166 bp):
GTGCAAAACTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAGC
TAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAACTAAGAAATTC
ATAATGAGTTTATGAATTTCCGTATGGGCACTTTGT
Found at i:850790 original size:56 final size:56
Alignment explanation
Indices: 850719--851582 Score: 1333
Period size: 55 Copynumber: 15.6 Consensus size: 56
850709 CTATGCATGC
**
850719 AAAG-TAAGAAATTCATAATGAGTTTATGAATTTTTGTATGGGCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
* * *
850774 AAAGCTAAGAAATTCATAATGAGTTTATAAATTTCAGTATGGGCACTTTGTGTGTA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
*
850830 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCTGTATGGGCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
850886 AAA-CTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGC-
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
*
850940 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTGCGTAT-GGCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
* *
850995 AAA-CTAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGTTTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
* * *
851050 AAAACTAAAAAATTCATAATGAGTTTATGAATTTGCGTATGGGCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
* **
851106 CAAGCTAAGAAATTCATAACAAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCGA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGC-A
* *
851163 AAA--TAAGAAATTCAAAATAAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
* *
851217 AAA-CTAATAAATTCATAATGAGTTTATGAATTT-TGTATGGGCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
*
851271 AAAGCTAATAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
* * *
851327 AAAGCTAAGAAGTTCATAATGAGTTTATGAATTTCCAT-TGGGCACTTTATGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
* * *
851382 AAA-CTAAGAAATTCATAATGAGCTTATTAATTTCC-TCATAGGCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGT-ATGGGCACTTTGTGTGCA
* * * *
851437 AAA-ATAATAAATTCATAATGAGTTTATGAATTTCTGTATGGTCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
851492 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
*
851548 AAA-CTAAGAAATTCATAATAAGTTTATGAATTTCC
1 AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCC
851583 ATATTGGTAG
Statistics
Matches: 747, Mismatches: 49, Indels: 26
0.91 0.06 0.03
Matches are distributed among these distances:
53 1 0.00
54 108 0.14
55 327 0.44
56 308 0.41
57 3 0.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (56 bp):
AAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCA
Found at i:851216 original size:276 final size:273
Alignment explanation
Indices: 850723--851580 Score: 1335
Period size: 276 Copynumber: 3.1 Consensus size: 273
850713 GCATGCAAAG
*
850723 TAAGAAATTCATAATGAGTTTATGAATTTTTGTATGGGCACTTTGTGTGCAAAAGCTAAGAAATT
1 TAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGTGTGCAAAAGCTAAGAAATT
* *
850788 CATAATGAGTTTATAAATTTCAGTATGGGCACTTTGTGTGTAAAAGCTAAGAAATTCATAATGAG
66 CATAATGAGTTTATGAATTTC-GTATGGGCACTTTGTGTG-CAAAGCTAAGAAATTCATAATGAG
*
850853 TTTATGAATTTCTGTATGGGCACTTTGTGTGCAAAACTAAGAAATTCATAATGAGTTTATGAATT
129 TTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAA-TAAGAAATTCATAATGAGTTTATGAATT
850918 TCCGTATGGGCACTTTGTGTGCAAAGCTAAGAAATTCATAATGAGTTTATGAATTTGCGTAT-GG
193 TCCGTATGGGCACTTTGTGTGCAAAGCTAAGAAATTCATAATGAGTTTATGAATTT-CGTATGGG
850982 CACTTTGTGTGCAAAAC
257 CACTTTGTGTGCAAAAC
* * *
850999 TAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGTTTGCAAAAACTAAAAAATT
1 TAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGTGTGCAAAAGCTAAGAAATT
**
851064 CATAATGAGTTTATGAATTTGCGTATGGGCACTTTGTGTGCACAAGCTAAGAAATTCATAACAAG
66 CATAATGAGTTTATGAATTT-CGTATGGGCACTTTGTGTGCA-AAGCTAAGAAATTCATAATGAG
* *
851129 TTTATGAATTTCCGTATGGGCACTTTGTGTGCGAAAATAAGAAATTCAAAATAAGTTTATGAATT
129 TTTATGAATTTCCGTATGGGCACTTTGTGTGC-AAAATAAGAAATTCATAATGAGTTTATGAATT
* * *
851194 TCCGTATGGGCACTTTGTGTGCAAAACTAATAAATTCATAATGAGTTTATGAATTTTGTATGGGC
193 TCCGTATGGGCACTTTGTGTGCAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCGTATGGGC
851259 ACTTTGTGTGCAAAAGC
258 ACTTTGTGTGCAAAA-C
* * *
851276 TAATAAATTCATAATGAGTTTATGAATTTCCGTATGGGCACTTTGTGTGCAAAAGCTAAGAAGTT
1 TAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGTGTGCAAAAGCTAAGAAATT
* * * *
851341 CATAATGAGTTTATGAATTTC-CATTGGGCACTTTATGTGCAAAACTAAGAAATTCATAATGAGC
66 CATAATGAGTTTATGAATTTCGTA-TGGGCACTTTGTGTGCAAAGCTAAGAAATTCATAATGAGT
* * *
851405 TTATTAATTTCC-TCATAGGCACTTTGTGTGCAAAAATAATAAATTCATAATGAGTTTATGAATT
130 TTATGAATTTCCGT-ATGGGCACTTTGTGTGC-AAAATAAGAAATTCATAATGAGTTTATGAATT
* *
851469 TCTGTATGGTCACTTTGTGTGCAAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATGG
193 TCCGTATGGGCACTTTGTGTGC-AAAGCTAAGAAATTCATAATGAGTTTATGAATTT-CGTATGG
851534 GCACTTTGTGTGCAAAAC
256 GCACTTTGTGTGCAAAAC
*
851552 TAAGAAATTCATAATAAGTTTATGAATTT
1 TAAGAAATTCATAATGAGTTTATGAATTT
851581 CCATATTGGT
Statistics
Matches: 534, Mismatches: 39, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
274 1 0.00
275 101 0.19
276 324 0.61
277 108 0.20
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (273 bp):
TAAGAAATTCATAATGAGTTTATGAATTTTCGTATGGGCACTTTGTGTGCAAAAGCTAAGAAATT
CATAATGAGTTTATGAATTTCGTATGGGCACTTTGTGTGCAAAGCTAAGAAATTCATAATGAGTT
TATGAATTTCCGTATGGGCACTTTGTGTGCAAAATAAGAAATTCATAATGAGTTTATGAATTTCC
GTATGGGCACTTTGTGTGCAAAGCTAAGAAATTCATAATGAGTTTATGAATTTCGTATGGGCACT
TTGTGTGCAAAAC
Found at i:851922 original size:46 final size:46
Alignment explanation
Indices: 851871--851958 Score: 149
Period size: 46 Copynumber: 1.9 Consensus size: 46
851861 TTAGATGAAG
* *
851871 AACAGTGCATAATTGGCACGAAAGGATGCCATAAATGAAAATGTAT
1 AACAGTCCATAATTGGCACGAAAGGATGCCACAAATGAAAATGTAT
*
851917 AACAGTCCATAATTGGCATGAAAGGATGCCACAAATGAAAAT
1 AACAGTCCATAATTGGCACGAAAGGATGCCACAAATGAAAAT
851959 ACATAGCGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.20
Consensus pattern (46 bp):
AACAGTCCATAATTGGCACGAAAGGATGCCACAAATGAAAATGTAT
Found at i:854713 original size:20 final size:20
Alignment explanation
Indices: 854675--854713 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
854665 CGGTCAGATA
*
854675 TTTTTCTTTTCAATTTTTAG
1 TTTTTCTTTTCAATGTTTAG
854695 TTTTTCCTTTT-AATGTTTA
1 TTTTT-CTTTTCAATGTTTA
854714 ATGGGTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (20 bp):
TTTTTCTTTTCAATGTTTAG
Found at i:854999 original size:16 final size:18
Alignment explanation
Indices: 854974--855019 Score: 60
Period size: 16 Copynumber: 2.6 Consensus size: 18
854964 AAGTGTCACA
*
854974 ATTATGTAATAAT-TATT
1 ATTATATAATAATATATT
854991 -TTATATAATAATAATATT
1 ATTATATAATAAT-ATATT
855009 ATTATATAATA
1 ATTATATAATA
855020 GATGTTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 11 0.44
18 4 0.16
19 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
ATTATATAATAATATATT
Found at i:855004 original size:19 final size:19
Alignment explanation
Indices: 854980--855019 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
854970 CACAATTATG
854980 TAATAATTATT-TTATATAA
1 TAATAA-TATTATTATATAA
854999 TAATAATATTATTATATAA
1 TAATAATATTATTATATAA
855018 TA
1 TA
855020 GATGTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATAATATTATTATATAA
Found at i:856033 original size:23 final size:24
Alignment explanation
Indices: 856000--856050 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
855990 AGAAAGGTGT
*
856000 TGATAAATGATCCACGCCTTGCGC
1 TGATAAATGATCCACGCCTTACGC
*
856024 TGAT-AATGATCCGCGCCTTACGC
1 TGATAAATGATCCACGCCTTACGC
856047 TGAT
1 TGAT
856051 GTGGCACCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (24 bp):
TGATAAATGATCCACGCCTTACGC
Found at i:858470 original size:3 final size:3
Alignment explanation
Indices: 858464--858504 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
858454 ATGATGATGA
*
858464 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TTG TGG TG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
858505 ATAATGATGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.63, T:0.37
Consensus pattern (3 bp):
TGG
Found at i:862859 original size:28 final size:28
Alignment explanation
Indices: 862816--862871 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
862806 TTCCATTTAC
*
862816 ATTATGTCGTCAAGTCAATACTTGAAAT
1 ATTATGTCATCAAGTCAATACTTGAAAT
* *
862844 ATTATGTCATCTAGTCAGTACTTGAAAT
1 ATTATGTCATCAAGTCAATACTTGAAAT
862872 TAAAAGTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (28 bp):
ATTATGTCATCAAGTCAATACTTGAAAT
Found at i:864315 original size:12 final size:12
Alignment explanation
Indices: 864298--864322 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
864288 GTTTATATTG
864298 GGGTTATTCAGA
1 GGGTTATTCAGA
864310 GGGTTATTCAGA
1 GGGTTATTCAGA
864322 G
1 G
864323 AAATCCATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.36, T:0.32
Consensus pattern (12 bp):
GGGTTATTCAGA
Found at i:865746 original size:15 final size:15
Alignment explanation
Indices: 865726--865773 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
865716 CTCGATTAAA
865726 TTCGGTTCGGGTTAT
1 TTCGGTTCGGGTTAT
865741 TTCGGTTCGGGTTAT
1 TTCGGTTCGGGTTAT
* *
865756 TTCGGTTTGGGTCAT
1 TTCGGTTCGGGTTAT
865771 TTC
1 TTC
865774 AGATTTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.06, C:0.15, G:0.31, T:0.48
Consensus pattern (15 bp):
TTCGGTTCGGGTTAT
Found at i:866500 original size:16 final size:15
Alignment explanation
Indices: 866443--866505 Score: 56
Period size: 16 Copynumber: 4.1 Consensus size: 15
866433 ATTAAATTCG
866443 AGTTACTTTCAGTTC
1 AGTTACTTTCAGTTC
* *
866458 AGGTTATTTTCAATTC
1 A-GTTACTTTCAGTTC
* * *
866474 AATTGCTTTCGGTTC
1 AGTTACTTTCAGTTC
866489 GAGTTACTTTC-GTTC
1 -AGTTACTTTCAGTTC
866504 AG
1 AG
866506 GCTAAAATTC
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
14 2 0.05
15 14 0.38
16 21 0.57
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.46
Consensus pattern (15 bp):
AGTTACTTTCAGTTC
Found at i:866884 original size:13 final size:13
Alignment explanation
Indices: 866866--866897 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
866856 AAAAAATAAC
866866 ATAAAAAC-AAAT
1 ATAAAAACAAAAT
866878 ATAAAAACAAAAT
1 ATAAAAACAAAAT
866891 ATAAAAA
1 ATAAAAA
866898 ATATAACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (13 bp):
ATAAAAACAAAAT
Found at i:866910 original size:13 final size:13
Alignment explanation
Indices: 866855--866912 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 13
866845 AATACAATAT
866855 TAAAAA-ATAACA
1 TAAAAACATAACA
*
866867 TAAAAACA-AATA
1 TAAAAACATAACA
* *
866879 TAAAAACAAAATA
1 TAAAAACATAACA
*
866892 TAAAAAATATAACA
1 T-AAAAACATAACA
866906 TAAAAAC
1 TAAAAAC
866913 TTAATTCAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
12 17 0.45
13 11 0.29
14 10 0.26
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (13 bp):
TAAAAACATAACA
Found at i:866988 original size:14 final size:15
Alignment explanation
Indices: 866970--867006 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
866960 TTTAAATATC
866970 ATAAATTAAAAAAAT
1 ATAAATTAAAAAAAT
*
866985 -TAAA-TAAAATAAT
1 ATAAATTAAAAAAAT
866998 ATAAATTAA
1 ATAAATTAA
867007 CGATGTCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 8 0.42
14 8 0.42
15 3 0.16
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAAATTAAAAAAAT
Found at i:867106 original size:49 final size:49
Alignment explanation
Indices: 867034--867132 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
867024 ATGCGTTACA
867034 CATGACAATAGTTGTGTATTTTGAGTAGGAATTCTATGTCTAGGTTGGT
1 CATGACAATAGTTGTGTATTTTGAGTAGGAATTCTATGTCTAGGTTGGT
867083 CATGACAATAGTTGTGTATTTTGAGTAGGAATTCTATGTCTAGGTTGGT
1 CATGACAATAGTTGTGTATTTTGAGTAGGAATTCTATGTCTAGGTTGGT
867132 C
1 C
867133 TTCATCTTCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.24, C:0.09, G:0.26, T:0.40
Consensus pattern (49 bp):
CATGACAATAGTTGTGTATTTTGAGTAGGAATTCTATGTCTAGGTTGGT
Found at i:869497 original size:20 final size:21
Alignment explanation
Indices: 869458--869497 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
869448 TTAGGGTTTG
869458 AGTATCGATACTAGGATGAAC
1 AGTATCGATACTAGGATGAAC
869479 AGTATCGATACTA-GATGAA
1 AGTATCGATACTAGGATGAA
869498 TTCAGGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (21 bp):
AGTATCGATACTAGGATGAAC
Found at i:870008 original size:78 final size:78
Alignment explanation
Indices: 869913--870073 Score: 313
Period size: 78 Copynumber: 2.1 Consensus size: 78
869903 AGATATAAAA
869913 TAAGTAGTACGATGAATATGTCAGATTCAGTGGTAGCAAAAGCATGAGCTTCGGGAATGTCTGTG
1 TAAGTAGTACGATGAATATGTCAGATTCAGTGGTAGCAAAAGCATGAGCTTCGGGAATGTCTGTG
869978 AACGCAGGAAGAG
66 AACGCAGGAAGAG
869991 TAAGTAGTACGATGAATATGTCAGATTCAGTGGTAGCAAAAGCATGAGCTTCGGGAATGTCTGTG
1 TAAGTAGTACGATGAATATGTCAGATTCAGTGGTAGCAAAAGCATGAGCTTCGGGAATGTCTGTG
*
870056 AACGCAGGAATAG
66 AACGCAGGAAGAG
870069 TAAGT
1 TAAGT
870074 CATCCTTTTT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.34, C:0.12, G:0.30, T:0.24
Consensus pattern (78 bp):
TAAGTAGTACGATGAATATGTCAGATTCAGTGGTAGCAAAAGCATGAGCTTCGGGAATGTCTGTG
AACGCAGGAAGAG
Found at i:879536 original size:30 final size:30
Alignment explanation
Indices: 879501--879589 Score: 117
Period size: 30 Copynumber: 3.0 Consensus size: 30
879491 AATGGATTTA
* *
879501 TTTAGTGACCAAATTATAAATTTGGTAAAG
1 TTTAGTGACCAAAATATAAATTTGGAAAAG
*
879531 TTTAGTGACCAAAGTATAAACTTT-GAAAAG
1 TTTAGTGACCAAAATATAAA-TTTGGAAAAG
* *
879561 TTTAGGGACCAAAATATAATTTTGGAAAA
1 TTTAGTGACCAAAATATAAATTTGGAAAA
879590 AATAAAAATG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
29 3 0.06
30 46 0.88
31 3 0.06
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.33
Consensus pattern (30 bp):
TTTAGTGACCAAAATATAAATTTGGAAAAG
Found at i:890500 original size:179 final size:180
Alignment explanation
Indices: 890194--890555 Score: 528
Period size: 179 Copynumber: 2.0 Consensus size: 180
890184 TGTCCGAGCC
* * * *
890194 AAATTCGCTACAAAGTCATCCAAAGATGGCTTGGGGTAGGGAACTTTTCCAAATACCACCAAGCA
1 AAATTCGCTACAAAATCATCCAAAGATAGATTGGGG-AGCGAACTTTTCCAAATACCACCAAGCA
* * *
890259 ACACAATACCAGATTAGAAACAAGAGCTGAAGAAAGTCCACTCATTTATAGTTGAAGATAATCTC
65 ACACAATACCAGATCAGAAACAAGAGCTGAAGAAAGTCCACTCATTTATAGCTGAAGATAATCTA
* *
890324 ATTCCAAAACAGCCACATAGACCAAAGGATTGCAAACGACAATATTCTCCA
130 ATTCCAAAACAGCCACAGAGACCAAAGGATTGCAAACGACAACATTCTCCA
* *
890375 AAATTCGCTGCAAAATCATCCAATGATAGATTGGGG-GCGAACTTTTCCAAATACCACCAAGCAA
1 AAATTCGCTACAAAATCATCCAAAGATAGATTGGGGAGCGAACTTTTCCAAATACCACCAAGCAA
* * * *
890439 CACAATACCGGATCAGAAACAAGAGCTGAAGAAAGTGCACTCATTTATTGCTGATGATAATCTAA
66 CACAATACCAGATCAGAAACAAGAGCTGAAGAAAGTCCACTCATTTATAGCTGAAGATAATCTAA
* * * * *
890504 TTCCAAAATAGCCACAGAGACTAAATGATTGCAAACGGCAACATTTTCCA
131 TTCCAAAACAGCCACAGAGACCAAAGGATTGCAAACGACAACATTCTCCA
890554 AA
1 AA
890556 TCAGACTCTT
Statistics
Matches: 161, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
179 130 0.81
181 31 0.19
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (180 bp):
AAATTCGCTACAAAATCATCCAAAGATAGATTGGGGAGCGAACTTTTCCAAATACCACCAAGCAA
CACAATACCAGATCAGAAACAAGAGCTGAAGAAAGTCCACTCATTTATAGCTGAAGATAATCTAA
TTCCAAAACAGCCACAGAGACCAAAGGATTGCAAACGACAACATTCTCCA
Found at i:895417 original size:20 final size:20
Alignment explanation
Indices: 895388--895431 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
895378 AGTGACATTA
* * *
895388 AAGATTATATGATTTAGATG
1 AAGATGATATGATTCAGATC
895408 AAGATGATATGATTCAGATC
1 AAGATGATATGATTCAGATC
895428 AAGA
1 AAGA
895432 AGACATTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (20 bp):
AAGATGATATGATTCAGATC
Found at i:901475 original size:17 final size:17
Alignment explanation
Indices: 901453--901485 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
901443 TAATAGTTGA
901453 TTTAATAAATGAACTAG
1 TTTAATAAATGAACTAG
*
901470 TTTAATTAATGAACTA
1 TTTAATAAATGAACTA
901486 CTTCCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (17 bp):
TTTAATAAATGAACTAG
Found at i:903073 original size:137 final size:137
Alignment explanation
Indices: 902857--903194 Score: 410
Period size: 137 Copynumber: 2.5 Consensus size: 137
902847 GAGATGCACC
* * * ** * * *
902857 AGTAGAATTTTTTCGACCAAAGCTCATCAATTGCAGAAGGAGTTAGACCAACATCATTTCATTTC
1 AGTAGAATTTATTCAACCAAAGCTCATCCATCACAAAAGGAGTTGGATCAACATCATTTCATTTC
* * * * * * **
902922 GCTCGATTCCATTGCAGAAGGAGGTGGACCAATATTCATTCATTTCTTGCT-CATCTTAGAAGTA
66 ACTCGATTCCATTGCAGAAGGAGGTGGACCAACATGCATCCATTAC-TCCTCCATCGCAGAAGTA
*
902986 AATTGACT
130 AATGGACT
* *
902994 AGTGGAATTTATTCAACCAAAGCTCATCCATCACATAAGGAGTTGGATCAACATCATTTCATTTC
1 AGTAGAATTTATTCAACCAAAGCTCATCCATCACAAAAGGAGTTGGATCAACATCATTTCATTTC
* *
903059 ACTCGATTCTATTGCAGAAGGAGGTGGACCAACATGCATCCATTACTCCTCCATCGCAGAAGTAG
66 ACTCGATTCCATTGCAGAAGGAGGTGGACCAACATGCATCCATTACTCCTCCATCGCAGAAGTAA
903124 ATGGACT
131 ATGGACT
* * * * *
903131 AGTAGAATTCATTTAACCAAAGCTCGTCCACCACAAAAGGAGTTGGATCAGA-ATCATCTCATTT
1 AGTAGAATTTATTCAACCAAAGCTCATCCATCACAAAAGGAGTTGGATCA-ACATCATTTCATTT
903195 TGCTCATTTC
Statistics
Matches: 172, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
136 3 0.02
137 168 0.98
138 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (137 bp):
AGTAGAATTTATTCAACCAAAGCTCATCCATCACAAAAGGAGTTGGATCAACATCATTTCATTTC
ACTCGATTCCATTGCAGAAGGAGGTGGACCAACATGCATCCATTACTCCTCCATCGCAGAAGTAA
ATGGACT
Found at i:903582 original size:10 final size:10
Alignment explanation
Indices: 903580--903623 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
903570 AAAATAAGGA
*
903580 AAAAAAGAA-
1 AAAAATGAAG
903589 AAAAATGAAG
1 AAAAATGAAG
903599 AAAAATGAAG
1 AAAAATGAAG
903609 AAAAATGAATG
1 AAAAATGAA-G
903620 AAAA
1 AAAA
903624 GAATAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 8 0.25
10 19 0.59
11 5 0.16
ACGTcount: A:0.75, C:0.00, G:0.16, T:0.09
Consensus pattern (10 bp):
AAAAATGAAG
Found at i:903593 original size:20 final size:21
Alignment explanation
Indices: 903568--903641 Score: 63
Period size: 20 Copynumber: 3.7 Consensus size: 21
903558 GAGAAATGAG
903568 AAAAAAT-AAGGAAAAA-AAGA
1 AAAAAATGAA-GAAAAAGAAGA
903588 AAAAAATGAAGAAAAATGAAG-
1 AAAAAATGAAGAAAAA-GAAGA
*
903609 -AAAAATGAATG-AAAAGAATA
1 AAAAAATGAA-GAAAAAGAAGA
903629 AAAAAA-GAA-AAAA
1 AAAAAATGAAGAAAA
903642 CCAAAGTAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 15
0.74 0.02 0.24
Matches are distributed among these distances:
19 6 0.13
20 29 0.63
21 8 0.17
22 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (21 bp):
AAAAAATGAAGAAAAAGAAGA
Found at i:904955 original size:116 final size:114
Alignment explanation
Indices: 904742--905435 Score: 781
Period size: 116 Copynumber: 6.0 Consensus size: 114
904732 ATGATTGCAG
* * * * * *
904742 CAAAGACTCGACACGTCCATCGCAAAAGGAGGTGGATCAATATTTCAGAGAAAGGGTTCAAAATG
1 CAAA-ACTCGACACATCCATCGCACAAGGAGGTGGATCAACATTTCTGAGGAA-GGTTCATAATG
* * * * *
904807 AGAAGAACACATCCAACAAAGGATAAGAAGTTCATAATGAGAAGAATTTATT
64 AGAAGAACTCATCCAAC-GAGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
* *
904859 CAAAACTTGACACATCCATTGCACAAGGAGGTGGATCAACATTTTCT-AGGAAGGTTTCATAATG
1 CAAAACTCGACACATCCATCGCACAAGGAGGTGGATCAACA-TTTCTGAGGAAGG-TTCATAATG
* * *
904923 ACAAGAACTCATCCAACGATGGAGAATAAGTTCATAATGAGAAGAATTTGTT
64 AGAAGAACTCATCCAACGA-GGAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * * *
904975 TAGAACTCGACACATCCATCGCACAAGGAGGCGGATCAATATTTCTGAGGAAGGTTTCATAATGC
1 CAAAACTCGACACATCCATCGCACAAGGAGGTGGATCAACATTTCTGAGGAAGG-TTCATAATGA
* * * *
905040 GAAGAAGTAATCGAACGAGGGAGAAGAATTTCATAATGAGAAGAACTTGTT
65 GAAGAACTCATCCAACGA-GGAGAAGAAGTTCATAATGAGAAGAACTTGTT
* *
905091 CAAAACTCGACACATCCATCGCACAAGTATGTGGATCAACATTTCTGAGGAAGGGTTCATAATGA
1 CAAAACTCGACACATCCATCGCACAAGGAGGTGGATCAACATTTCTGAGGAA-GGTTCATAATGA
**
905156 GAAGAACTCGCCCAACGAGAGAGAAGAAGTTCATAATGAGAAGAACTTGTT
65 GAAGAACTCATCCAACGAG-GAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * * * *
905207 CAGAACTCGACACGTCCATCACATAAGGAGGTGGATCAATATTTTTGAGGAAGAGTTCATAATGA
1 CAAAACTCGACACATCCATCGCACAAGGAGGTGGATCAACATTTCTGAGGAAG-GTTCATAATGA
* * *
905272 GAAGAACTCATCCAACGAGGGAGAAAAAGTTCATAAT---TATAACTTGTT
65 GAAGAACTCATCCAACGA-GGAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * * * *
905320 CATAACTCTACAAATCTATCGCACAAGGAGGTTGATCAACATTTCTGAGGAATGGTTCATACTGA
1 CAAAACTCGACACATCCATCGCACAAGGAGGTGGATCAACATTTCTGAGGAA-GGTTCATAATGA
* * * *
905385 GAATAACTCATCCAAAGAGGAAGAA-AAGTTCAT-AT-AGGAGAGCTTGTT
65 GAAGAACTCATCCAACGAGG-AGAAGAAGTTCATAATGAGAAGAACTTGTT
905433 CAA
1 CAA
905436 CCTCAACAAT
Statistics
Matches: 493, Mismatches: 72, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
111 2 0.00
112 10 0.02
113 91 0.18
114 1 0.00
115 10 0.02
116 368 0.75
117 11 0.02
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.23
Consensus pattern (114 bp):
CAAAACTCGACACATCCATCGCACAAGGAGGTGGATCAACATTTCTGAGGAAGGTTCATAATGAG
AAGAACTCATCCAACGAGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
Found at i:906769 original size:23 final size:25
Alignment explanation
Indices: 906725--906771 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
906715 CTTGTTTTCT
* *
906725 TTGGTTTCTTTTTTTTCGTTTCTAA
1 TTGGTTTCTTTATTTACGTTTCTAA
906750 TTGGTTT-TTTATTTAC-TTTCTA
1 TTGGTTTCTTTATTTACGTTTCTA
906772 TTGTATGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.68
Consensus pattern (25 bp):
TTGGTTTCTTTATTTACGTTTCTAA
Found at i:910523 original size:3 final size:3
Alignment explanation
Indices: 910515--910566 Score: 88
Period size: 3 Copynumber: 17.3 Consensus size: 3
910505 TTATAATTAG
910515 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
910560 TAA TAA T
1 TAA TAA T
910567 TACAATTAGA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.91
4 2 0.04
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:910985 original size:43 final size:45
Alignment explanation
Indices: 910820--911036 Score: 198
Period size: 46 Copynumber: 4.9 Consensus size: 45
910810 TCGAGGAATG
* * *
910820 ACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAGGAGATCTGGCCATCTAAAGGT-ATA
* *
910866 ACACGGTTCCTACGTGATGAGGAAATCTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAGGAGATCTGGCCATCTAAAGGT-ATA
* * ** * *
910912 ACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCT-ATGGT-TG
1 ACACGGCTCCTACGTGATGAGGA-GATCTGGCCATCTAAAGGTATA
* * *
910955 ACACGGCTCCTACGTGATGAGGAGATCTGG---TCT--GGGAATG
1 ACACGGCTCCTACGTGATGAGGAGATCTGGCCATCTAAAGGTATA
* * *
910995 ACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGT
1 ACACGGCTCCTACGTGATGAGGAGATCTGGCCATCTAAAGGT
911037 GTTATGGTTT
Statistics
Matches: 143, Mismatches: 20, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
39 2 0.01
40 32 0.22
42 1 0.01
43 30 0.21
45 6 0.04
46 72 0.50
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (45 bp):
ACACGGCTCCTACGTGATGAGGAGATCTGGCCATCTAAAGGTATA
Found at i:911136 original size:31 final size:28
Alignment explanation
Indices: 911063--911139 Score: 102
Period size: 28 Copynumber: 2.6 Consensus size: 28
911053 AGACCAAATT
*
911063 AAAGATTTGTTTCAAAAGAAACAGGCTC
1 AAAGATTTGTTTCAAAAGAAACAAGCTC
911091 AAAGATTTGTTTCAAGAA-AAACAAGCTC
1 AAAGATTTGTTTCAA-AAGAAACAAGCTC
911119 AAAGATAATGTGTTTCAAAAG
1 AAAGAT--T-TGTTTCAAAAG
911140 CAACTGTCTC
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
28 30 0.70
29 2 0.05
30 3 0.07
31 8 0.19
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26
Consensus pattern (28 bp):
AAAGATTTGTTTCAAAAGAAACAAGCTC
Found at i:911330 original size:66 final size:64
Alignment explanation
Indices: 911141--911330 Score: 168
Period size: 66 Copynumber: 2.9 Consensus size: 64
911131 TTTCAAAAGC
** * *
911141 AACTGTCTCGAAAGAGACAAAATTCATTTCAAATGAAAC-AACTCAAAAGATG-ACGTTTAAAGG
1 AACTGTCTC-AAAGAGACAAAATTCATTTCAAGGGAAACGATCTC-AAAGATGTATGTTTAAAGG
911204 G
64 G
* * ** * * * * * * *
911205 AATTGTCTCAAGCGAGACAAAATTTGTTTTTAAGGGAAACGTTCTCAAATATCTGTGTTTCATGG
1 AACTGTCTCAA-AGAGACAAAA-TTCATTTCAAGGGAAACGATCTCAAAGATGTATGTTTAAAGG
911270 G
64 G
*
911271 AAACTGTCTCAAATGAGACAAAATTCATTTCAAGGGAAACGATCTCAAAGATGTTTGTTT
1 -AACTGTCTCAAA-GAGACAAAATTCATTTCAAGGGAAACGATCTCAAAGATGTATGTTT
911331 TGTTTCAAGG
Statistics
Matches: 96, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
63 2 0.02
64 17 0.18
65 17 0.18
66 41 0.43
67 19 0.20
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (64 bp):
AACTGTCTCAAAGAGACAAAATTCATTTCAAGGGAAACGATCTCAAAGATGTATGTTTAAAGGG
Found at i:911805 original size:66 final size:63
Alignment explanation
Indices: 911714--911883 Score: 157
Period size: 65 Copynumber: 2.6 Consensus size: 63
911704 TGTCTCATGC
* * *
911714 GAGATAAAA-TTTGTTTTCATAGAAACGATCTCAAAGGTGGGTATTTTCAAAA-GAAGTTGTC-T
1 GAGATAAAATTTTG-TTTCAAAGAAACGA-CTCAAAGAT--GTATTTTCAAAAGGAA-TTGCCTT
*
911776 TGA
61 TAA
* * * * *
911779 GAGACAAAATTTTGTTTCAAAGGAAACAAACTCAATGATTTTTTTTCAAAAGGAATTGCCTTTAA
1 GAGATAAAATTTTGTTTCAAA-GAAAC-GACTCAAAGATGTATTTTCAAAAGGAATTGCCTTTAA
911844 GAGATAAAATTTTGTTTCAAAAGAAACAGACTCAAAGATG
1 GAGATAAAATTTTGTTTC-AAAGAAAC-GACTCAAAGATG
911884 GATTACATCT
Statistics
Matches: 86, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
64 14 0.16
65 52 0.60
66 19 0.22
67 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.32
Consensus pattern (63 bp):
GAGATAAAATTTTGTTTCAAAGAAACGACTCAAAGATGTATTTTCAAAAGGAATTGCCTTTAA
Found at i:911847 original size:65 final size:64
Alignment explanation
Indices: 911757--911878 Score: 174
Period size: 65 Copynumber: 1.9 Consensus size: 64
911747 AAGGTGGGTA
* * *
911757 TTTTCAAAAGAAGTTGTCTTGAGAGACAAAATTTTGTTTCAAAGGAAACAAACTCAATGATTTT
1 TTTTCAAAAGAAGTTGCCTTAAGAGACAAAATTTTGTTTCAAAAGAAACAAACTCAATGATTTT
* *
911821 TTTTCAAAAGGAA-TTGCCTTTAAGAGATAAAATTTTGTTTCAAAAGAAACAGACTCAA
1 TTTTCAAAA-GAAGTTGCC-TTAAGAGACAAAATTTTGTTTCAAAAGAAACAAACTCAA
911879 AGATGGATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
64 13 0.25
65 38 0.75
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (64 bp):
TTTTCAAAAGAAGTTGCCTTAAGAGACAAAATTTTGTTTCAAAAGAAACAAACTCAATGATTTT
Found at i:912151 original size:66 final size:66
Alignment explanation
Indices: 912063--912215 Score: 168
Period size: 67 Copynumber: 2.3 Consensus size: 66
912053 AAAGATTTAC
* * * * *
912063 TTCAAGAGAAATTGTCTCAAGAGATACAAAATTCAT-TTT-AAGAGAAAAAGATTCAAAGATTTT
1 TTCAAAAGAAAATATCTCAAGAGAGACAAAATT-ATGTTTCAA-AGAAAAAGACTCAAAGATTTT
*
912126 TTT
64 TGT
* * *
912129 TTCAAAAGAAAATATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAGACTCAAAGATTTTT
1 TTCAAAAGAAAATATCTCAAGAGAGACAAAATTATGTTT-CAAAGAAAAAGACTCAAAGATTTTT
912194 GT
65 GT
912196 TTCAAAAGAAACA-ATCTCAA
1 TTCAAAAGAAA-ATATCTCAA
912216 AGATTTTTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
65 1 0.01
66 31 0.42
67 38 0.52
68 3 0.04
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (66 bp):
TTCAAAAGAAAATATCTCAAGAGAGACAAAATTATGTTTCAAAGAAAAAGACTCAAAGATTTTTG
T
Found at i:912194 original size:30 final size:30
Alignment explanation
Indices: 912160--912223 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 30
912150 AGAGACAAAA
*
912160 TTTTGTTTCCAAAGAAACAGA-CTCAAAGAT
1 TTTTGTTTCAAAAGAAACA-ATCTCAAAGAT
912190 TTTTGTTTCAAAAGAAACAATCTCAAAGAT
1 TTTTGTTTCAAAAGAAACAATCTCAAAGAT
912220 TTTT
1 TTTT
912224 TTCACAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (30 bp):
TTTTGTTTCAAAAGAAACAATCTCAAAGAT
Found at i:912232 original size:30 final size:29
Alignment explanation
Indices: 912155--912232 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 29
912145 TTAAGAGAGA
912155 CAAA-ATTTTGTTTCC-AAAGAAACAGACT
1 CAAAGATTTT-TTTCCAAAAGAAACAGACT
*
912183 CAAAGATTTTTGTTTCAAAAGAAACA-ATCT
1 CAAAGATTTTT-TTCCAAAAGAAACAGA-CT
912213 CAAAGATTTTTTTCACAAAA
1 CAAAGATTTTTTTC-CAAAA
912233 TTGTCTCAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
28 5 0.12
29 11 0.26
30 27 0.63
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (29 bp):
CAAAGATTTTTTTCCAAAAGAAACAGACT
Found at i:912286 original size:52 final size:53
Alignment explanation
Indices: 912211--912314 Score: 174
Period size: 52 Copynumber: 2.0 Consensus size: 53
912201 AAGAAACAAT
912211 CTCAAAGATTTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGA
1 CTCAAAGA-TTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGA
* *
912265 CTCAAAGA-TTTTTCACGAAATTGTCTTAAGAGAGACAAAACTTTGTTTCA
1 CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCA
912315 AAAGAAATAG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
52 40 0.83
54 8 0.17
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (53 bp):
CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGA
Found at i:912615 original size:36 final size:36
Alignment explanation
Indices: 912531--912634 Score: 133
Period size: 36 Copynumber: 3.0 Consensus size: 36
912521 GAGAAAATGA
* *
912531 TGTCTCAAGCGAGACAAAATTTG-CTTTA-AGATAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
* **
912565 AGTCTCAAATGAGACAAAATTTGTTTTTAGAGAAAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
*
912601 TGTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAA
912635 ACGATCTCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
34 20 0.34
35 10 0.17
36 29 0.49
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (36 bp):
TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
Found at i:912662 original size:36 final size:36
Alignment explanation
Indices: 912532--912650 Score: 120
Period size: 36 Copynumber: 3.4 Consensus size: 36
912522 AGAAAATGAT
* * *
912532 GTCTCAAGCGAGACAAAATTTG-CTTTA-AGATATA-
1 GTCTCAAGTGAGACAAAATTTGTTTTTAGAGA-AAAC
* **
912566 GTCTCAAATGAGACAAAATTTGTTTTTAGAGAAATT
1 GTCTCAAGTGAGACAAAATTTGTTTTTAGAGAAAAC
* *
912602 GTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAAAC
1 GTCTCAAGTGAGACAAAATTTGTTTTTAGAGAAAAC
912637 GATCTCAAGTGAGA
1 G-TCTCAAGTGAGA
912651 TCAACTTTGT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
34 20 0.29
35 12 0.17
36 38 0.54
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (36 bp):
GTCTCAAGTGAGACAAAATTTGTTTTTAGAGAAAAC
Found at i:912781 original size:105 final size:101
Alignment explanation
Indices: 912602--912834 Score: 283
Period size: 105 Copynumber: 2.3 Consensus size: 101
912592 TAGAGAAATT
*
912602 GTCTCAAGCGAGAC-AAAGTTTGTTTTTGAGAAAACGATCTCAAGTGAGATCAACTTTGTTTAAT
1 GTCTCAAGCGAGACGAAA-TTTG-TTTTGAGAAAACAATCTCAAGTGAGATCAACTTTGTTTAAT
* * *
912666 GTGAAACAAATTCGAAATTTGGATCTCAAAGGGAAAAG
64 GTGAAACAAATTCAAAATTTGGATCTAAAAGGAAAAAG
* *
912704 GTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAACAATCT-AAGGTGAGATTAATTTTGTTT
1 GTCTCAAGCGAGACGAAATTTGTTTTG--AG-AA-AACAATCTCAA-GTGAGATCAACTTTG-TT
* * *
912768 TAA-GTGAATCAAATTCAAAATTTGTATCTAAAAGGAAAAAT
60 TAATGTGAAACAAATTCAAAATTTGGATCTAAAAGGAAAAAG
*
912809 GTCTCAAGCGAGACGCAATTTGTTTT
1 GTCTCAAGCGAGACGAAATTTGTTTT
912835 AAAATTCTCA
Statistics
Matches: 114, Mismatches: 10, Indels: 11
0.84 0.07 0.08
Matches are distributed among these distances:
101 5 0.04
102 18 0.16
103 5 0.04
104 4 0.04
105 77 0.68
106 5 0.04
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (101 bp):
GTCTCAAGCGAGACGAAATTTGTTTTGAGAAAACAATCTCAAGTGAGATCAACTTTGTTTAATGT
GAAACAAATTCAAAATTTGGATCTAAAAGGAAAAAG
Found at i:919012 original size:29 final size:29
Alignment explanation
Indices: 918961--919036 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
918951 CCAAAATAAT
918961 AAAAACAGAAACATAAAGAACTAAAAAGC
1 AAAAACAGAAACATAAAGAACTAAAAAGC
* ** * * * *
918990 TAAAACAGAAAGTTAGAGGACTAAAATGG
1 AAAAACAGAAACATAAAGAACTAAAAAGC
*
919019 AAAAACAGAAACTTAAAG
1 AAAAACAGAAACATAAAG
919037 GGCCAAATAG
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.62, C:0.11, G:0.16, T:0.12
Consensus pattern (29 bp):
AAAAACAGAAACATAAAGAACTAAAAAGC
Found at i:920519 original size:3 final size:3
Alignment explanation
Indices: 920511--920592 Score: 139
Period size: 3 Copynumber: 27.3 Consensus size: 3
920501 TTATAATTAG
920511 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
920559 TAA T-A TAAA TAA TAA TAA TAA TAA TAA TAT TAA T
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA T
920593 TACAATTAGA
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
2 2 0.03
3 71 0.95
4 2 0.03
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:924848 original size:42 final size:42
Alignment explanation
Indices: 924789--924890 Score: 170
Period size: 42 Copynumber: 2.4 Consensus size: 42
924779 TTAAGGTTAT
924789 GTCATTTAGTGGCATTTTGGGAACAAATGCCA-CAAAAGATAG
1 GTCATTTAGTGGCATTTTGGGAACAAATG-CAGCAAAAGATAG
*
924831 GTCATTTAGTGGCATTTTGGGAACAAATGCAGCAAAAGGTAG
1 GTCATTTAGTGGCATTTTGGGAACAAATGCAGCAAAAGATAG
*
924873 GTAATTTAGTGGCATTTT
1 GTCATTTAGTGGCATTTT
924891 TAAGTAAAAC
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
41 2 0.04
42 55 0.96
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (42 bp):
GTCATTTAGTGGCATTTTGGGAACAAATGCAGCAAAAGATAG
Found at i:927132 original size:42 final size:41
Alignment explanation
Indices: 927061--927188 Score: 123
Period size: 42 Copynumber: 3.1 Consensus size: 41
927051 AAGGAGGCAT
* * *
927061 TTTAATAACAAACGCCAATAAAGTGCGTCTCTATTGCGGCG
1 TTTAACAACAAACGCCACTAAAGTACGTCTCTATTGCGGCG
*
927102 TTTCAACAACAAACGCCACTAACA-TACGTCTCTATTGTGGCG
1 TTT-AACAACAAACGCCACTAA-AGTACGTCTCTATTGCGGCG
* * * * * * *
927144 TCTTAATAACAAACTCTACTAAATTTCGCCTCTATTGCGACG
1 T-TTAACAACAAACGCCACTAAAGTACGTCTCTATTGCGGCG
927186 TTT
1 TTT
927189 TTATTACAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
41 6 0.08
42 63 0.88
43 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (41 bp):
TTTAACAACAAACGCCACTAAAGTACGTCTCTATTGCGGCG
Found at i:927744 original size:25 final size:25
Alignment explanation
Indices: 927711--927758 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
927701 TGATTATCTT
* *
927711 ATTTTGTATCTCTTGAAATTTTATA
1 ATTTCGTATCTCTTAAAATTTTATA
927736 ATTTCGTATCTCTTAAAATTTTA
1 ATTTCGTATCTCTTAAAATTTTA
927759 ATATTACTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.54
Consensus pattern (25 bp):
ATTTCGTATCTCTTAAAATTTTATA
Found at i:931821 original size:45 final size:45
Alignment explanation
Indices: 931749--932109 Score: 501
Period size: 45 Copynumber: 8.1 Consensus size: 45
931739 TTATTTATTA
* *
931749 ATTTCATTTAT-ACATCCTTTTAAGCCTTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* * **
931793 ATTTTATTTATGACATCATTTCATGCCTTTTATACACTTTTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
**
931838 ATTTCATTTATGGTATCCTTTCATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* *
931883 ATGTCATTTATGACATCCTTTCATGCATTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* *
931928 ATTTCATTTATGACATCATTTCATGTCTTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* * * * *
931973 CTTTTATTTACGGCATCCTTTTATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
**
932018 ATTTCATTTATGACATCCTTTCATGCCTTTTATACATAATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* * * *
932063 CTTTCATTTATGGCATCCTTTTATG-CTTTTATACACCATTATGC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
932107 ATT
1 ATT
932110 GCTATCTATC
Statistics
Matches: 275, Mismatches: 41, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 28 0.10
45 247 0.90
ACGTcount: A:0.26, C:0.21, G:0.06, T:0.47
Consensus pattern (45 bp):
ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
Found at i:931968 original size:21 final size:21
Alignment explanation
Indices: 931856--931968 Score: 95
Period size: 22 Copynumber: 5.1 Consensus size: 21
931846 TATGGTATCC
*
931856 TTTCATGCCTTTTATACACCA
1 TTTCATGTCTTTTATACACCA
*
931877 TTATACATGTCATTTATGACATCC-
1 TT-T-CATGTCTTTTAT-ACA-CCA
931901 TTTCATG-CATTTTATACACCA
1 TTTCATGTC-TTTTATACACCA
* * *
931922 TTATACATTTCATTTATGACATCA
1 TT-T-CATGTCTTTTAT-ACACCA
931946 TTTCATGTCTTTTATACACCA
1 TTTCATGTCTTTTATACACCA
931967 TT
1 TT
931969 ATACCTTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 20
0.72 0.09 0.20
Matches are distributed among these distances:
20 2 0.03
21 15 0.21
22 21 0.29
23 20 0.27
24 13 0.18
25 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.05, T:0.45
Consensus pattern (21 bp):
TTTCATGTCTTTTATACACCA
Found at i:932489 original size:55 final size:55
Alignment explanation
Indices: 932372--932480 Score: 148
Period size: 55 Copynumber: 2.0 Consensus size: 55
932362 GCCTATATGG
* **
932372 TAGTTCATCAACTCATGATGAATTTCATGGATTTGCACACATCTTGCATGTACGA
1 TAGTTCATAAACTCATGATGAATTTCATGGATTTGCACACATAGTGCATGTACGA
* * *
932427 TAGTTCATAAACTCATGATGAATTAT-GTGGATTTTCACACATAGTGCTTGTACG
1 TAGTTCATAAACTCATGATGAATT-TCATGGATTTGCACACATAGTGCATGTACG
932481 GTTATTCATC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 46 0.98
56 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (55 bp):
TAGTTCATAAACTCATGATGAATTTCATGGATTTGCACACATAGTGCATGTACGA
Found at i:932539 original size:54 final size:54
Alignment explanation
Indices: 932478--932796 Score: 521
Period size: 54 Copynumber: 5.9 Consensus size: 54
932468 TAGTGCTTGT
*
932478 ACGGTTATTCATCCACATAGGATGAATTCCATGAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * * *
932532 ACAGTTATTCATCCACATATGATGAATTTCGTGAAATGCACACTTAGTGCCAAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
*
932586 ACGGTTATTCATCCACATAGGATGAATTTCGTGAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * *
932640 ACGGTTATTCATCCACATAGGATGAATTCCATGAAATGCAAACATAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * * *
932694 ACGATTATTCATCCACATAGAATGAATTCCGTGAAATACACACTTAGTGCTGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
932748 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTG
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTG
932797 TCTATTTGGT
Statistics
Matches: 243, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 243 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (54 bp):
ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
Found at i:933190 original size:20 final size:20
Alignment explanation
Indices: 933165--933214 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
933155 TATGCTATGG
933165 TATCGATACATT-CCCTTCGA
1 TATCGATAC-TTCCCCTTCGA
*
933185 TATCGATACTTCCCCTTCGG
1 TATCGATACTTCCCCTTCGA
933205 TATCGATACT
1 TATCGATACT
933215 GATTGAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.22, C:0.30, G:0.12, T:0.36
Consensus pattern (20 bp):
TATCGATACTTCCCCTTCGA
Found at i:937547 original size:21 final size:21
Alignment explanation
Indices: 937521--937639 Score: 80
Period size: 22 Copynumber: 5.4 Consensus size: 21
937511 ATTAATTTCA
937521 TTTATACATCCTTTCATGCCT
1 TTTATACATCCTTTCATGCCT
** *
937542 TTTATACA-CCATTATACATTTCA
1 TTTATACATCC-TT-T-CATGCCT
* *
937565 TTTATGACATCATTTCATGCAT
1 TTTAT-ACATCCTTTCATGCCT
** *
937587 TTTATACA-CCATTATACATTTCG
1 TTTATACATCC-TT-T-CATGCCT
937610 TTTATAGCATCCTTTCATGCCT
1 TTTATA-CATCCTTTCATGCCT
937632 TTTATACA
1 TTTATACA
937640 CCATTATACA
Statistics
Matches: 72, Mismatches: 16, Indels: 20
0.67 0.15 0.19
Matches are distributed among these distances:
20 3 0.04
21 17 0.24
22 20 0.28
23 20 0.28
24 9 0.12
25 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.05, T:0.45
Consensus pattern (21 bp):
TTTATACATCCTTTCATGCCT
Found at i:937582 original size:45 final size:45
Alignment explanation
Indices: 937515--937876 Score: 546
Period size: 45 Copynumber: 8.1 Consensus size: 45
937505 TTATTTATTA
*
937515 ATTTCATTTAT-ACATCCTTTCATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* * *
937559 ATTTCATTTATGACATCATTTCATGCATTTTATACACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* *
937604 ATTTCGTTTATAGCATCCTTTCATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* * * *
937649 ATTTTATTTATGGCAACATTTCATGCCTTTTATATACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* *
937694 ATTTCATTTATGGCATCCTTTCATGACTTTTATACATCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* *
937739 CTTTCATTTATGGCATCCTTTTATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
*
937784 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACAATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* * * *
937829 CTTTCATTTATGGCATCTTTTTATGCCTTTTATACACCATTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
937874 ATT
1 ATT
937877 GATATCCATC
Statistics
Matches: 285, Mismatches: 32, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
44 11 0.04
45 274 0.96
ACGTcount: A:0.26, C:0.22, G:0.06, T:0.46
Consensus pattern (45 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
Found at i:938200 original size:55 final size:54
Alignment explanation
Indices: 938116--938391 Score: 338
Period size: 55 Copynumber: 5.0 Consensus size: 54
938106 TTTATTAAGA
* * * * * *
938116 TGCACACGTAGTGCCTATATGGTAATTCATCAATTCATGATAAATTTCATGGATT
1 TGCACACATAGTGCCTGTACGGT-ATTCATCAACTCATGATGAATTTCGTGGATT
938171 TGCACACATAGTGCCTGTACGGTAGTTCATCAACTCATGATGAA-TTCTGTGGATT
1 TGCACACATAGTGCCTGTACGGTA-TTCATCAACTCATGATGAATTTC-GTGGATT
* *
938226 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATT
1 TGCACACATAGTGCCTGTACGG-TATTCATCAACTCATGATGAATTTCGTGGATT
* * * * *
938281 TGCACACATAGTGTCTGTACGATTATTCATCATCTCATGATTAATTTTGTGGATT
1 TGCACACATAGTGCCTGTACG-GTATTCATCAACTCATGATGAATTTCGTGGATT
* * * *
938336 TTCACACATAGTTCTTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATT
1 TGCACACATAGTGCCTGTACGG-TATTCATCAACTCATGATGAATTTCGTGGATT
938391 T
1 T
938392 ATATACTTAG
Statistics
Matches: 191, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
54 4 0.02
55 183 0.96
56 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
TGCACACATAGTGCCTGTACGGTATTCATCAACTCATGATGAATTTCGTGGATT
Found at i:938310 original size:110 final size:110
Alignment explanation
Indices: 938116--938391 Score: 383
Period size: 110 Copynumber: 2.5 Consensus size: 110
938106 TTTATTAAGA
* * * * * * * * *
938116 TGCACACGTAGTGCCTATATGGTAATTCATCAATTCATGATAAATTTCATGGATTTGCACACATA
1 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATA
938181 GTGCCTGTACGGTAGTTCATCAACTCATGATGAATTCTGTGGATT
66 GTGCCTGTACGGTAGTTCATCAACTCATGATGAATTCTGTGGATT
938226 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATA
1 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATA
* * * * *
938291 GTGTCTGTACGATTA-TTCATCATCTCATGATTAATTTTGTGGATT
66 GTGCCTGTACG-GTAGTTCATCAACTCATGATGAATTCTGTGGATT
* * *
938336 TTCACACATAGTTCTTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTT
1 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTT
938392 ATATACTTAG
Statistics
Matches: 148, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
110 146 0.99
111 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (110 bp):
TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATA
GTGCCTGTACGGTAGTTCATCAACTCATGATGAATTCTGTGGATT
Found at i:938415 original size:165 final size:165
Alignment explanation
Indices: 938140--938441 Score: 405
Period size: 165 Copynumber: 1.8 Consensus size: 165
938130 CTATATGGTA
938140 ATTCATCAATTCATGATAAATTTCATGGATTTGCACACATAGTGCCTGTACGGTAGTTCATCAAC
1 ATTCATCAATTCATGATAAATTTCATGGATTTGCACACATAGTGCCTGTACGGTAGTTCATCAAC
* * * * *
938205 TCATGATGAATTCTGTGGATTTGCACACATAGTGCATGTACGGTTATTCATCAAC-TCATGATGA
66 TCATGATGAATTCCGTGGATTTACACACATAGTACATGAACGGTTATTCATCAACAT-AGGATGA
938269 ATTCCGTGGATTTGCACACATAGTGTCTGTACGATT
130 ATTCCGTGGATTTGCACACATAGTGTCTGTACGATT
* ** * * *
938305 ATTCATC-ATCTCATGATTAATTTTGTGGATTTTCACACATAGTTCTTGTACGGTTA-TTCATCA
1 ATTCATCAAT-TCATGATAAATTTCATGGATTTGCACACATAGTGCCTGTACGG-TAGTTCATCA
* * * *
938368 ACTCATGATGAATTCCGTGGATTTATATACTTAGTAC-TGAAACGGTTATTCATCCACATAGGAT
64 ACTCATGATGAATTCCGTGGATTTACACACATAGTACATG-AACGGTTATTCATCAACATAGGAT
938432 GAATTCCGTG
128 GAATTCCGTG
938442 AAATGCACAC
Statistics
Matches: 118, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
164 4 0.03
165 111 0.94
166 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (165 bp):
ATTCATCAATTCATGATAAATTTCATGGATTTGCACACATAGTGCCTGTACGGTAGTTCATCAAC
TCATGATGAATTCCGTGGATTTACACACATAGTACATGAACGGTTATTCATCAACATAGGATGAA
TTCCGTGGATTTGCACACATAGTGTCTGTACGATT
Found at i:939694 original size:44 final size:44
Alignment explanation
Indices: 939626--939711 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
939616 TCTAGGCAAA
939626 AAAGCTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCAAG
1 AAAGCTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCAAG
*
939670 AAAGGTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCA
1 AAAGCTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCA
939712 CAATTTTGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.34, C:0.13, G:0.33, T:0.21
Consensus pattern (44 bp):
AAAGCTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCAAG
Found at i:940646 original size:42 final size:43
Alignment explanation
Indices: 940587--940687 Score: 132
Period size: 42 Copynumber: 2.3 Consensus size: 43
940577 GATTCGTAAG
* * * * *
940587 TCCTTCGAGCCATCTGTAAGTCTTTCGAGCATGATGCTTAA-A
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCATGATGATAAACA
940629 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCATGATGATAAAGCA
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCATGATGATAAA-CA
940673 TGCCTTCGGGTCATC
1 T-CCTTCGGGTCATC
940688 CATAAGACCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
42 36 0.71
44 2 0.04
45 13 0.25
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (43 bp):
TCCTTCGGGTCATCTGTAAGCCTTTCGAGCATGATGATAAACA
Found at i:940795 original size:265 final size:262
Alignment explanation
Indices: 940321--941154 Score: 1005
Period size: 265 Copynumber: 3.3 Consensus size: 262
940311 TCCCGATTTT
* * *
940321 GTAAATCCTTCGGGCCATCTTTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGAGTCATCTGTA
1 GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
* * * *
940386 AGCCTTTTGAACAAGATGAT-AAAGCCTTCAGGTCATCTATAAGACCATCAGTACTGGATGCTTT
66 AGCCTTTCGAGCAAGATGATAAAAGCCTTCAGGTCATCCATAAGACCATCAGTACTGGAGGCTTT
* * * * *
940450 CAAATGAGATTTTAGAAACTAAGTCTTTCAGTGGTTTCCTAATTATCTGAAAAGAGTTGTTAAAG
131 AAAATGAGATTTTAGAAACTAAGCCTTTCAGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAG
* * * * * *
940515 GAAGCTAAGCCTAACAATGGGGTTCCTTGACAACTAAGAAACTAAGGTTTTGAGGGTTTCTTGAT
196 GAAGCTAAGCCTAACAAAGAGGTTCCTTGACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGAT
940580 TC
261 TC
*
940582 GTAAGTCCTTCGAGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
1 GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
* * * **
940647 AGCCTTTCGAGCATGATGATAAAGCATGCCTTCGGGTCATCCATAAGACCTTCAGTGTTGGAGGC
66 AGCCTTTCGAGCAAGATGATAAA--A-GCCTTCAGGTCATCCATAAGACCATCAGTACTGGAGGC
*
940712 TTTAAAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCA
128 TTTAAAATGAGATTTTAGAAACTAAGCCTTTCAGGGGTTTCCTAATTATCTCAAAAGAGTTGTCA
940777 AAGGAAGCTAAGCCTAACAAAGAGGTTCCTTGACAACAAAAAAACTAAGCTTTCGAGGGTTTCTT
193 AAGGAAGCTAAGCCTAACAAAGAGGTTCCTTGACAACAAAAAAACTAAGCTTTCGAGGGTTTCTT
940842 GATTC
258 GATTC
* * * * * ** * *
940847 GCAAGTCCTTTGGGCCATCTGCAAGTCTTTCGAGAATGATGTTTAAATTTTTCAGGTCATCAGTA
1 GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
* * *
940912 AGCTTTTCGAGCAAGATAATAAGA-CCTTCGAGG--------AAG---AT--G---T------TT
66 AGCCTTTCGAGCAAGATGATAAAAGCCTTC-AGGTCATCCATAAGACCATCAGTACTGGAGGCTT
* * * *
940954 TCAAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCTTAATTATCTCAAAAGAGTTGTTAAA
130 TAAAATGAGATTTTAGAAACTAAGCCTTTCAGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAA
* * * * *
941019 GGAAGCTAAGCCTAACAAAGGGGTTCCTTAACAACTAAGAAACTAAGCTTTTGAGGGTTTCTTGA
195 GGAAGCTAAGCCTAACAAAGAGGTTCCTTGACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGA
941084 TTC
260 TTC
* * * * *
941087 ATAAGTCCTTGGGGCCATCTGTAAATCTTTCGAGCATGATGCTTTAATCCATCGGGTCATCTGTA
1 GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
941152 AGC
66 AGC
941155 ATTTTGATAA
Statistics
Matches: 506, Mismatches: 62, Indels: 31
0.84 0.10 0.05
Matches are distributed among these distances:
240 182 0.36
246 1 0.00
249 1 0.00
251 1 0.00
254 3 0.01
261 83 0.16
262 4 0.01
263 1 0.00
264 1 0.00
265 229 0.45
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (262 bp):
GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
AGCCTTTCGAGCAAGATGATAAAAGCCTTCAGGTCATCCATAAGACCATCAGTACTGGAGGCTTT
AAAATGAGATTTTAGAAACTAAGCCTTTCAGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAG
GAAGCTAAGCCTAACAAAGAGGTTCCTTGACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGAT
TC
Found at i:941147 original size:240 final size:241
Alignment explanation
Indices: 940716--941159 Score: 703
Period size: 240 Copynumber: 1.8 Consensus size: 241
940706 GGAGGCTTTA
940716 AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAGG
1 AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAGG
*
940781 AAGCTAAGCCTAACAAAGAGGTTCCTTGACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGATT
66 AAGCTAAGCCTAACAAAGAGGTTCCTTAACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGATT
* * * ***
940846 CGCAAGTCCTTTGGGCCATCTGCAAGTCTTTCGAGAATGATGTTTAAATTTTTCAGGTCATCAGT
131 CACAAGTCCTTGGGGCCATCTGCAAATCTTTCGAGAATGATGTTTAAATCCATCAGGTCATCAGT
940911 AAGC-TTTTCGAGCAAGATAATAAGACCTTCGAGGAAGATGTTTTC
196 AAGCATTTTCGAGCAAGATAATAAGACCTTCGAGGAAGATGTTTTC
* *
940956 AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCTTAATTATCTCAAAAGAGTTGTTAAAGG
1 AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAGG
* * * *
941021 AAGCTAAGCCTAACAAAGGGGTTCCTTAACAACTAAGAAACTAAGCTTTTGAGGGTTTCTTGATT
66 AAGCTAAGCCTAACAAAGAGGTTCCTTAACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGATT
* * * * *
941086 CATAAGTCCTTGGGGCCATCTGTAAATCTTTCGAGCATGATGCTTT-AATCCATCGGGTCATCTG
131 CACAAGTCCTTGGGGCCATCTGCAAATCTTTCGAGAATGATG-TTTAAATCCATCAGGTCATCAG
941150 TAAGCATTTT
195 TAAGCATTTT
941160 GATAAGACCT
Statistics
Matches: 184, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
240 177 0.96
241 7 0.04
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (241 bp):
AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAGG
AAGCTAAGCCTAACAAAGAGGTTCCTTAACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGATT
CACAAGTCCTTGGGGCCATCTGCAAATCTTTCGAGAATGATGTTTAAATCCATCAGGTCATCAGT
AAGCATTTTCGAGCAAGATAATAAGACCTTCGAGGAAGATGTTTTC
Found at i:941647 original size:3 final size:3
Alignment explanation
Indices: 941576--941628 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
941566 TTATTTGTTT
*
941576 TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
941624 TTA TT
1 TTA TT
941629 GTTACTAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:950421 original size:29 final size:29
Alignment explanation
Indices: 950370--950445 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
950360 CCAAAATAAT
950370 AAAAACAGAAACATAAAGAACTAAAAAGC
1 AAAAACAGAAACATAAAGAACTAAAAAGC
* ** * * * *
950399 TAAAACAGAAAGTTAGAGGACTAAAATGG
1 AAAAACAGAAACATAAAGAACTAAAAAGC
*
950428 AAAAACAGAAACTTAAAG
1 AAAAACAGAAACATAAAG
950446 GGCCAAATAG
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.62, C:0.11, G:0.16, T:0.12
Consensus pattern (29 bp):
AAAAACAGAAACATAAAGAACTAAAAAGC
Found at i:951934 original size:3 final size:3
Alignment explanation
Indices: 951926--951992 Score: 109
Period size: 3 Copynumber: 22.3 Consensus size: 3
951916 TTATAATTAG
951926 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
*
951971 TAA TAA TAA TAA TAA TAT TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
951993 TACAATTAGA
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
2 2 0.03
3 56 0.93
4 2 0.03
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:956255 original size:42 final size:42
Alignment explanation
Indices: 956196--956297 Score: 170
Period size: 42 Copynumber: 2.4 Consensus size: 42
956186 TTAAGGTTAT
956196 GTCATTTAGTGGCATTTTGGGAACAAATGCCA-CAAAAGATAG
1 GTCATTTAGTGGCATTTTGGGAACAAATG-CAGCAAAAGATAG
*
956238 GTCATTTAGTGGCATTTTGGGAACAAATGCAGCAAAAGGTAG
1 GTCATTTAGTGGCATTTTGGGAACAAATGCAGCAAAAGATAG
*
956280 GTAATTTAGTGGCATTTT
1 GTCATTTAGTGGCATTTT
956298 TAAGTAAAAC
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
41 2 0.04
42 55 0.96
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (42 bp):
GTCATTTAGTGGCATTTTGGGAACAAATGCAGCAAAAGATAG
Found at i:958540 original size:42 final size:41
Alignment explanation
Indices: 958469--958596 Score: 123
Period size: 42 Copynumber: 3.1 Consensus size: 41
958459 AAGGAGGCAT
* * *
958469 TTTAATAACAAACGCCAATAAAGTGCGTCTCTATTGCGGCG
1 TTTAACAACAAACGCCACTAAAGTACGTCTCTATTGCGGCG
*
958510 TTTCAACAACAAACGCCACTAACA-TACGTCTCTATTGTGGCG
1 TTT-AACAACAAACGCCACTAA-AGTACGTCTCTATTGCGGCG
* * * * * * *
958552 TCTTAATAACAAACTCTACTAAATTTCGCCTCTATTGCGACG
1 T-TTAACAACAAACGCCACTAAAGTACGTCTCTATTGCGGCG
958594 TTT
1 TTT
958597 TTATTACAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
41 6 0.08
42 63 0.88
43 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (41 bp):
TTTAACAACAAACGCCACTAAAGTACGTCTCTATTGCGGCG
Found at i:959152 original size:25 final size:25
Alignment explanation
Indices: 959119--959166 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
959109 TGATTATCTT
* *
959119 ATTTTGTATCTCTTGAAATTTTATA
1 ATTTCGTATCTCTTAAAATTTTATA
959144 ATTTCGTATCTCTTAAAATTTTA
1 ATTTCGTATCTCTTAAAATTTTA
959167 ATATTACTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.54
Consensus pattern (25 bp):
ATTTCGTATCTCTTAAAATTTTATA
Found at i:963228 original size:45 final size:45
Alignment explanation
Indices: 963156--963517 Score: 510
Period size: 45 Copynumber: 8.1 Consensus size: 45
963146 TTATTTATTA
* *
963156 ATTTCATTTAT-ACATCCTTTTAAGCCTTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* * **
963200 ATTTTATTTATGACATCATTTCATGCCTTTTATACACTTTTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
**
963245 ATTTCATTTATGGTATCCTTTCATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* *
963290 ATGTCATTTATGACATCCTTTCATGCATTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* *
963335 ATTTCATTTATGACATCATTTCATGTCTTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* * * * *
963380 CTTTTATTTACGGCATCCTTTTATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
**
963425 ATTTCATTTATGACATCCTTTCATGCCTTTTATACATAATTATAC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
* * * *
963470 CTTTCATTTATGGCATCCTTTTATGCCTTTTATACACCATTATGC
1 ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
963515 ATT
1 ATT
963518 GCTATCTATC
Statistics
Matches: 276, Mismatches: 41, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
44 10 0.04
45 266 0.96
ACGTcount: A:0.26, C:0.22, G:0.06, T:0.47
Consensus pattern (45 bp):
ATTTCATTTATGACATCCTTTCATGCCTTTTATACACCATTATAC
Found at i:963375 original size:21 final size:21
Alignment explanation
Indices: 963263--963375 Score: 95
Period size: 22 Copynumber: 5.1 Consensus size: 21
963253 TATGGTATCC
*
963263 TTTCATGCCTTTTATACACCA
1 TTTCATGTCTTTTATACACCA
*
963284 TTATACATGTCATTTATGACATCC-
1 TT-T-CATGTCTTTTAT-ACA-CCA
963308 TTTCATG-CATTTTATACACCA
1 TTTCATGTC-TTTTATACACCA
* * *
963329 TTATACATTTCATTTATGACATCA
1 TT-T-CATGTCTTTTAT-ACACCA
963353 TTTCATGTCTTTTATACACCA
1 TTTCATGTCTTTTATACACCA
963374 TT
1 TT
963376 ATACCTTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 20
0.72 0.09 0.20
Matches are distributed among these distances:
20 2 0.03
21 15 0.21
22 21 0.29
23 20 0.27
24 13 0.18
25 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.05, T:0.45
Consensus pattern (21 bp):
TTTCATGTCTTTTATACACCA
Found at i:963897 original size:55 final size:55
Alignment explanation
Indices: 963780--963888 Score: 148
Period size: 55 Copynumber: 2.0 Consensus size: 55
963770 GCCTATATGG
* **
963780 TAGTTCATCAACTCATGATGAATTTCATGGATTTGCACACATCTTGCATGTACGA
1 TAGTTCATAAACTCATGATGAATTTCATGGATTTGCACACATAGTGCATGTACGA
* * *
963835 TAGTTCATAAACTCATGATGAATTAT-GTGGATTTTCACACATAGTGCTTGTACG
1 TAGTTCATAAACTCATGATGAATT-TCATGGATTTGCACACATAGTGCATGTACG
963889 GTTATTCATC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 46 0.98
56 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (55 bp):
TAGTTCATAAACTCATGATGAATTTCATGGATTTGCACACATAGTGCATGTACGA
Found at i:963947 original size:54 final size:54
Alignment explanation
Indices: 963886--964204 Score: 521
Period size: 54 Copynumber: 5.9 Consensus size: 54
963876 TAGTGCTTGT
*
963886 ACGGTTATTCATCCACATAGGATGAATTCCATGAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * * *
963940 ACAGTTATTCATCCACATATGATGAATTTCGTGAAATGCACACTTAGTGCCAAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
*
963994 ACGGTTATTCATCCACATAGGATGAATTTCGTGAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * *
964048 ACGGTTATTCATCCACATAGGATGAATTCCATGAAATGCAAACATAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * * *
964102 ACGATTATTCATCCACATAGAATGAATTCCGTGAAATACACACTTAGTGCTGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
964156 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTG
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTG
964205 TCTATTTGGT
Statistics
Matches: 243, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 243 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (54 bp):
ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
Found at i:964598 original size:20 final size:20
Alignment explanation
Indices: 964573--964622 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
964563 TATGCTATGG
964573 TATCGATACATT-CCCTTCGA
1 TATCGATAC-TTCCCCTTCGA
*
964593 TATCGATACTTCCCCTTCGG
1 TATCGATACTTCCCCTTCGA
964613 TATCGATACT
1 TATCGATACT
964623 GATTGAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.22, C:0.30, G:0.12, T:0.36
Consensus pattern (20 bp):
TATCGATACTTCCCCTTCGA
Found at i:968951 original size:21 final size:21
Alignment explanation
Indices: 968925--969043 Score: 80
Period size: 22 Copynumber: 5.4 Consensus size: 21
968915 ATTAATTTCA
968925 TTTATACATCCTTTCATGCCT
1 TTTATACATCCTTTCATGCCT
** *
968946 TTTATACA-CCATTATACATTTCA
1 TTTATACATCC-TT-T-CATGCCT
* *
968969 TTTATGACATCATTTCATGCAT
1 TTTAT-ACATCCTTTCATGCCT
** *
968991 TTTATACA-CCATTATACATTTCG
1 TTTATACATCC-TT-T-CATGCCT
969014 TTTATAGCATCCTTTCATGCCT
1 TTTATA-CATCCTTTCATGCCT
969036 TTTATACA
1 TTTATACA
969044 CCATTATACA
Statistics
Matches: 72, Mismatches: 16, Indels: 20
0.67 0.15 0.19
Matches are distributed among these distances:
20 3 0.04
21 17 0.24
22 20 0.28
23 20 0.28
24 9 0.12
25 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.05, T:0.45
Consensus pattern (21 bp):
TTTATACATCCTTTCATGCCT
Found at i:968986 original size:45 final size:45
Alignment explanation
Indices: 968919--969280 Score: 546
Period size: 45 Copynumber: 8.1 Consensus size: 45
968909 TTATTTATTA
*
968919 ATTTCATTTAT-ACATCCTTTCATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* * *
968963 ATTTCATTTATGACATCATTTCATGCATTTTATACACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* *
969008 ATTTCGTTTATAGCATCCTTTCATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* * * *
969053 ATTTTATTTATGGCAACATTTCATGCCTTTTATATACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* *
969098 ATTTCATTTATGGCATCCTTTCATGACTTTTATACATCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* *
969143 CTTTCATTTATGGCATCCTTTTATGCCTTTTATACACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
*
969188 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACAATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
* * * *
969233 CTTTCATTTATGGCATCTTTTTATGCCTTTTATACACCATTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
969278 ATT
1 ATT
969281 GATATCCATC
Statistics
Matches: 285, Mismatches: 32, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
44 11 0.04
45 274 0.96
ACGTcount: A:0.26, C:0.22, G:0.06, T:0.46
Consensus pattern (45 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTTTATACACCATTATAC
Found at i:969604 original size:55 final size:54
Alignment explanation
Indices: 969520--969795 Score: 338
Period size: 55 Copynumber: 5.0 Consensus size: 54
969510 TTTATTAAGA
* * * * * *
969520 TGCACACGTAGTGCCTATATGGTAATTCATCAATTCATGATAAATTTCATGGATT
1 TGCACACATAGTGCCTGTACGGT-ATTCATCAACTCATGATGAATTTCGTGGATT
969575 TGCACACATAGTGCCTGTACGGTAGTTCATCAACTCATGATGAA-TTCTGTGGATT
1 TGCACACATAGTGCCTGTACGGTA-TTCATCAACTCATGATGAATTTC-GTGGATT
* *
969630 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATT
1 TGCACACATAGTGCCTGTACGG-TATTCATCAACTCATGATGAATTTCGTGGATT
* * * * *
969685 TGCACACATAGTGTCTGTACGATTATTCATCATCTCATGATTAATTTTGTGGATT
1 TGCACACATAGTGCCTGTACG-GTATTCATCAACTCATGATGAATTTCGTGGATT
* * * *
969740 TTCACACATAGTTCTTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATT
1 TGCACACATAGTGCCTGTACGG-TATTCATCAACTCATGATGAATTTCGTGGATT
969795 T
1 T
969796 ATATACTTAG
Statistics
Matches: 191, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
54 4 0.02
55 183 0.96
56 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
TGCACACATAGTGCCTGTACGGTATTCATCAACTCATGATGAATTTCGTGGATT
Found at i:969714 original size:110 final size:110
Alignment explanation
Indices: 969520--969795 Score: 383
Period size: 110 Copynumber: 2.5 Consensus size: 110
969510 TTTATTAAGA
* * * * * * * * *
969520 TGCACACGTAGTGCCTATATGGTAATTCATCAATTCATGATAAATTTCATGGATTTGCACACATA
1 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATA
969585 GTGCCTGTACGGTAGTTCATCAACTCATGATGAATTCTGTGGATT
66 GTGCCTGTACGGTAGTTCATCAACTCATGATGAATTCTGTGGATT
969630 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATA
1 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATA
* * * * *
969695 GTGTCTGTACGATTA-TTCATCATCTCATGATTAATTTTGTGGATT
66 GTGCCTGTACG-GTAGTTCATCAACTCATGATGAATTCTGTGGATT
* * *
969740 TTCACACATAGTTCTTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTT
1 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTT
969796 ATATACTTAG
Statistics
Matches: 148, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
110 146 0.99
111 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (110 bp):
TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATA
GTGCCTGTACGGTAGTTCATCAACTCATGATGAATTCTGTGGATT
Found at i:969819 original size:165 final size:165
Alignment explanation
Indices: 969544--969845 Score: 405
Period size: 165 Copynumber: 1.8 Consensus size: 165
969534 CTATATGGTA
969544 ATTCATCAATTCATGATAAATTTCATGGATTTGCACACATAGTGCCTGTACGGTAGTTCATCAAC
1 ATTCATCAATTCATGATAAATTTCATGGATTTGCACACATAGTGCCTGTACGGTAGTTCATCAAC
* * * * *
969609 TCATGATGAATTCTGTGGATTTGCACACATAGTGCATGTACGGTTATTCATCAAC-TCATGATGA
66 TCATGATGAATTCCGTGGATTTACACACATAGTACATGAACGGTTATTCATCAACAT-AGGATGA
969673 ATTCCGTGGATTTGCACACATAGTGTCTGTACGATT
130 ATTCCGTGGATTTGCACACATAGTGTCTGTACGATT
* ** * * *
969709 ATTCATC-ATCTCATGATTAATTTTGTGGATTTTCACACATAGTTCTTGTACGGTTA-TTCATCA
1 ATTCATCAAT-TCATGATAAATTTCATGGATTTGCACACATAGTGCCTGTACGG-TAGTTCATCA
* * * *
969772 ACTCATGATGAATTCCGTGGATTTATATACTTAGTAC-TGAAACGGTTATTCATCCACATAGGAT
64 ACTCATGATGAATTCCGTGGATTTACACACATAGTACATG-AACGGTTATTCATCAACATAGGAT
969836 GAATTCCGTG
128 GAATTCCGTG
969846 AAATGCACAC
Statistics
Matches: 118, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
164 4 0.03
165 111 0.94
166 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (165 bp):
ATTCATCAATTCATGATAAATTTCATGGATTTGCACACATAGTGCCTGTACGGTAGTTCATCAAC
TCATGATGAATTCCGTGGATTTACACACATAGTACATGAACGGTTATTCATCAACATAGGATGAA
TTCCGTGGATTTGCACACATAGTGTCTGTACGATT
Found at i:971098 original size:44 final size:44
Alignment explanation
Indices: 971030--971115 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
971020 TCTAGGCAAA
971030 AAAGCTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCAAG
1 AAAGCTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCAAG
*
971074 AAAGGTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCA
1 AAAGCTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCA
971116 CAATTTTGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.34, C:0.13, G:0.33, T:0.21
Consensus pattern (44 bp):
AAAGCTGGTGTTATCCAGGATAAAATGGGGGCATCAAGGTCAAG
Found at i:972050 original size:42 final size:43
Alignment explanation
Indices: 971991--972091 Score: 132
Period size: 42 Copynumber: 2.3 Consensus size: 43
971981 GATTCGTAAG
* * * * *
971991 TCCTTCGAGCCATCTGTAAGTCTTTCGAGCATGATGCTTAA-A
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCATGATGATAAACA
972033 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCATGATGATAAAGCA
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCATGATGATAAA-CA
972077 TGCCTTCGGGTCATC
1 T-CCTTCGGGTCATC
972092 CATAAGACCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
42 36 0.71
44 2 0.04
45 13 0.25
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (43 bp):
TCCTTCGGGTCATCTGTAAGCCTTTCGAGCATGATGATAAACA
Found at i:972199 original size:265 final size:258
Alignment explanation
Indices: 971725--972558 Score: 1067
Period size: 265 Copynumber: 3.3 Consensus size: 258
971715 TCCCGATTTT
* * *
971725 GTAAATCCTTCGGGCCATCTTTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGAGTCATCTGTA
1 GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
* * * *
971790 AGCCTTTTGAACAAGATGATAA-AGCCTTCAGGTCATCTATAAGACCATCAGTACTGGATGCTTT
66 AGCCTTTCGAGCAAGATGATAAGAGCCTTCGGGTCATC-ATAAGACC-TCAGT-GTGGA-GCTTT
* * * *
971854 CAAATGAGATTTTAGAAACTAAGTCTTTCAGTGGTTTCCTAATTATCTGAAAAGAGTTGTTAAAG
127 CAAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTTAAAG
* *
971919 GAAGCTAAGCCTAACAATGGGGTTCCTTGACAACTAAGAAACTAAGGTTTTGAGGGTTTCTTGAT
192 GAAGCTAAGCCTAACAAAGGGGTTCCTTGACAACTAAGAAACTAAGCTTTTGAGGGTTTCTTGAT
971984 TC
257 TC
*
971986 GTAAGTCCTTCGAGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
1 GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
*
972051 AGCCTTTCGAGCATGATGATAAAGCATGCCTTCGGGTCATCCATAAGACCTTCAGTGTTGGAGGC
66 AGCCTTTCGAGCAAGATGAT-AAG-A-GCCTTCGGGTCAT-CATAAGACC-TCAGTG-TGGA-GC
* *
972116 TTTAAAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCA
124 TTTCAAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTTA
* * * *
972181 AAGGAAGCTAAGCCTAACAAAGAGGTTCCTTGACAACAAAAAAACTAAGCTTTCGAGGGTTTCTT
189 AAGGAAGCTAAGCCTAACAAAGGGGTTCCTTGACAACTAAGAAACTAAGCTTTTGAGGGTTTCTT
972246 GATTC
254 GATTC
* * * * * ** * *
972251 GCAAGTCCTTTGGGCCATCTGCAAGTCTTTCGAGAATGATGTTTAAATTTTTCAGGTCATCAGTA
1 GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
* * *
972316 AGCTTTTCGAGCAAGATAATAAGA-CCTTCGGG------GAAG-----A-TGT-----TTTCAAA
66 AGCCTTTCGAGCAAGATGATAAGAGCCTTCGGGTCATCATAAGACCTCAGTGTGGAGCTTTCAAA
*
972363 TGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCTTAATTATCTCAAAAGAGTTGTTAAAGGAAG
131 TGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTTAAAGGAAG
* *
972428 CTAAGCCTAACAAAGGGGTTCCTTAACAACTAAGAAACTAAGCTTTTGAGGGTTTCTTGATTT
196 CTAAGCCTAACAAAGGGGTTCCTTGACAACTAAGAAACTAAGCTTTTGAGGGTTTCTTGATTC
* * * * *
972491 ATAAGTCCTTGGGGCCATCTGTAAATCTTTCGAGCATGATGCTTTAATCCATCGGGTCATCTGTA
1 GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
972556 AGC
66 AGC
972559 ATTTTGATAA
Statistics
Matches: 508, Mismatches: 59, Indels: 33
0.85 0.10 0.05
Matches are distributed among these distances:
240 181 0.36
246 1 0.00
247 2 0.00
248 1 0.00
254 3 0.01
261 86 0.17
262 2 0.00
263 1 0.00
264 4 0.01
265 226 0.44
266 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (258 bp):
GTAAGTCCTTCGGGCCATCTGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
AGCCTTTCGAGCAAGATGATAAGAGCCTTCGGGTCATCATAAGACCTCAGTGTGGAGCTTTCAAA
TGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTTAAAGGAAG
CTAAGCCTAACAAAGGGGTTCCTTGACAACTAAGAAACTAAGCTTTTGAGGGTTTCTTGATTC
Found at i:972551 original size:240 final size:241
Alignment explanation
Indices: 972120--972563 Score: 694
Period size: 240 Copynumber: 1.8 Consensus size: 241
972110 GGAGGCTTTA
972120 AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAGG
1 AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAGG
*
972185 AAGCTAAGCCTAACAAAGAGGTTCCTTGACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGATT
66 AAGCTAAGCCTAACAAAGAGGTTCCTTAACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGATT
* * * ***
972250 CGCAAGTCCTTTGGGCCATCTGCAAGTCTTTCGAGAATGATGTTTAAATTTTTCAGGTCATCAGT
131 CACAAGTCCTTGGGGCCATCTGCAAATCTTTCGAGAATGATGTTTAAATCCATCAGGTCATCAGT
972315 AAGC-TTTTCGAGCAAGATAATAAGACCTTCGGGGAAGATGTTTTC
196 AAGCATTTTCGAGCAAGATAATAAGACCTTCGGGGAAGATGTTTTC
* *
972360 AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCTTAATTATCTCAAAAGAGTTGTTAAAGG
1 AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAGG
* * * *
972425 AAGCTAAGCCTAACAAAGGGGTTCCTTAACAACTAAGAAACTAAGCTTTTGAGGGTTTCTTGATT
66 AAGCTAAGCCTAACAAAGAGGTTCCTTAACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGATT
* * * * * *
972490 TATAAGTCCTTGGGGCCATCTGTAAATCTTTCGAGCATGATGCTTT-AATCCATCGGGTCATCTG
131 CACAAGTCCTTGGGGCCATCTGCAAATCTTTCGAGAATGATG-TTTAAATCCATCAGGTCATCAG
972554 TAAGCATTTT
195 TAAGCATTTT
972564 GATAAGACCT
Statistics
Matches: 183, Mismatches: 19, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
240 176 0.96
241 7 0.04
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (241 bp):
AAATGAGATTTTAGAAACTAAGCCTTTCGGGGGTTTCCTAATTATCTCAAAAGAGTTGTCAAAGG
AAGCTAAGCCTAACAAAGAGGTTCCTTAACAACAAAAAAACTAAGCTTTCGAGGGTTTCTTGATT
CACAAGTCCTTGGGGCCATCTGCAAATCTTTCGAGAATGATGTTTAAATCCATCAGGTCATCAGT
AAGCATTTTCGAGCAAGATAATAAGACCTTCGGGGAAGATGTTTTC
Found at i:973063 original size:3 final size:3
Alignment explanation
Indices: 972980--973044 Score: 121
Period size: 3 Copynumber: 21.7 Consensus size: 3
972970 TTATTTGTTT
*
972980 TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
973028 TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
973045 GTTACTAAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:979268 original size:22 final size:22
Alignment explanation
Indices: 979210--979271 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
979200 TTAGTGTAGA
* *
979210 GGGAATCAATACCCCCTTGATG
1 GGGAATCGATACCCCCCTGATG
* *
979232 GGGAACCGAT-TCCCCCT-ATAG
1 GGGAATCGATACCCCCCTGAT-G
979253 GGGAATCGATACCCCCCTG
1 GGGAATCGATACCCCCCTG
979272 GGGCTCTGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 2 0.06
21 15 0.48
22 14 0.45
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.19
Consensus pattern (22 bp):
GGGAATCGATACCCCCCTGATG
Done.