genome.fa.s8924.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008924.1 Hibiscus syriacus cultivar Beakdansim tig00112228_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27527

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4294--4352	29	2.0	29	93	0	100	52	11	11	23	1.71
5471--5529	19	3.0	19	71	22	50	38	0	6	54	1.27
5524--5554	14	2.2	14	94	0	53	32	0	6	61	1.21
6469--6580	20	5.5	20	76	9	75	33	23	18	24	1.97
6746--6788	21	2.0	21	100	0	86	18	44	18	18	1.87
7048--7106	20	3.0	20	87	0	73	16	18	22	42	1.89
7243--7297	25	2.2	24	78	15	58	20	9	18	52	1.71
8425--8469	18	2.5	18	88	0	72	26	44	15	13	1.83
8948--9014	20	3.4	20	83	2	82	40	23	20	14	1.90
8986--9077	33	2.8	34	87	11	129	46	20	18	14	1.83
9003--9060	14	3.9	14	77	16	62	48	22	17	12	1.80
8987--9077	32	2.8	33	93	3	157	47	20	18	13	1.82
9094--9133	14	2.9	14	96	0	71	10	15	25	50	1.74
9134--9189	20	2.8	19	84	7	67	16	23	23	37	1.93
11053--11088	14	2.6	14	90	0	54	30	0	22	47	1.52
11171--11209	20	2.0	20	94	0	69	46	30	10	12	1.75
11215--11279	19	3.7	19	84	15	95	46	18	21	13	1.84
11305--11391	20	4.4	20	94	2	142	17	25	24	33	1.96
11305--11391	39	2.2	39	91	4	140	17	25	24	33	1.96
13886--14011	33	3.8	33	83	6	175	43	19	21	15	1.87
13887--14018	65	2.0	66	92	1	221	42	19	21	16	1.89
14040--14076	19	1.9	19	100	0	74	10	21	18	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14042--14086	19	2.4	19	88	0	63	15	17	17	48	1.81
14193--14229	14	2.6	14	91	0	65	45	24	0	29	1.53
15625--15787	42	3.9	42	78	1	184	22	17	38	21	1.93
15616--15790	83	2.1	84	97	1	334	23	17	38	21	1.93
16007--16193	91	2.0	90	91	6	304	47	19	12	21	1.82
16337--16478	63	2.3	63	85	2	142	26	35	16	20	1.94
16360--16490	63	2.1	63	97	0	244	23	35	18	22	1.95
17972--18034	33	1.9	33	93	0	108	42	22	23	11	1.85
17947--18091	19	8.1	19	73	16	103	45	17	22	13	1.84
17955--18091	52	2.6	52	89	1	193	44	18	22	13	1.86
18087--18131	19	2.4	19	80	0	54	8	15	24	51	1.72
18685--18814	20	6.4	20	84	5	136	25	18	24	31	1.97
23515--23554	5	8.0	5	83	10	55	17	0	2	80	0.83
23515--23558	11	4.0	11	83	16	56	18	0	2	79	0.83
23515--23559	16	2.9	16	83	12	58	20	0	2	77	0.87
27049--27083	16	2.3	15	90	5	52	28	0	0	71	0.86
27131--27252	49	2.4	49	85	4	156	30	8	19	41	1.81

Tables:   1

The End!