Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008925.1 Hibiscus syriacus cultivar Beakdansim tig00112230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2702387
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 11
Found at i:519329 original size:24 final size:24
Alignment explanation
Indices: 519266--519368 Score: 91
Period size: 24 Copynumber: 4.3 Consensus size: 24
519256 AGTACATTTT
** * **
519266 TGTACTCCAATATTAATGCATTAA
1 TGTACTCCTGTATTAGTGCATTCG
* *
519290 TGTACTCTTGTATTAGTGCATACG
1 TGTACTCCTGTATTAGTGCATTCG
* * *
519314 TGTACTCCTGTATTAGTACCTTTG
1 TGTACTCCTGTATTAGTGCATTCG
*
519338 -GATACTCCTGTATTAGTGAATTCG
1 TG-TACTCCTGTATTAGTGCATTCG
519362 TGTACTC
1 TGTACTC
519369 TTGGGACTAC
Statistics
Matches: 61, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
23 1 0.02
24 59 0.97
25 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (24 bp):
TGTACTCCTGTATTAGTGCATTCG
Found at i:523430 original size:54 final size:54
Alignment explanation
Indices: 523359--523692 Score: 551
Period size: 54 Copynumber: 6.2 Consensus size: 54
523349 ATTGCACCTA
* *
523359 AGTGCCGAAATGGTAATTCATAAACTCATTATGAATTCCATGGATTGCACATAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
* *
523413 AGTGCCGAAATCGTAATTCAGAAACTCATTATGAATTCCATGGATTGCACACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
* * *
523467 AGTGCCGAAATGGTAATTCACAAACTCATTATAAATTTCATGGATTGCATACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
* *
523521 AGTGCTGAAATGGTAATTCACAAACTCATTATAAATTCCATGGATTGCACACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
* *
523575 AGTGCCCAAATGGTAATTCACAAACTCATTATTAATTCCATGGATTGCACACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
* *
523629 AGTGCCGACATGGTAATTCACAAACTCATTATGAATTCCATGGATCGCACACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
523683 AGTGCCGAAA
1 AGTGCCGAAA
523693 GTTCACATAG
Statistics
Matches: 261, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 261 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (54 bp):
AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
Found at i:530609 original size:54 final size:54
Alignment explanation
Indices: 530535--530868 Score: 542
Period size: 54 Copynumber: 6.2 Consensus size: 54
530525 ATTGCACTTA
* * *
530535 AGTGTCGAAATGGTAGTTCACAAACTCATTATGAATTCCAAGGATTGCACACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
* *
530589 AGTGTCGAAATGGTAATTCACAAACTCATTATGAATTCCAAGGATTGCACACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
** * * *
530643 AGTGTTGAAATGGTAATTCACGAACTCATTATGAATTTCATGGATTGCATACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
*
530697 AGTGCCGAAATGGTAATTCACAAACTCATTATTAATTCCATGGATTGCACACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
* *
530751 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTGCATGGATTGCACACAG
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
*
530805 AGTGCTGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
1 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
530859 AGTGCCGAAA
1 AGTGCCGAAA
530869 GTATACATAG
Statistics
Matches: 261, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 261 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (54 bp):
AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACAT
Found at i:531263 original size:21 final size:21
Alignment explanation
Indices: 531237--531281 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
531227 TTGACTCAAG
531237 AGCTTGATTTCGATCTACACC
1 AGCTTGATTTCGATCTACACC
531258 AGCTTGATTTCGATCTACACC
1 AGCTTGATTTCGATCTACACC
531279 AGC
1 AGC
531282 ATCCATAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (21 bp):
AGCTTGATTTCGATCTACACC
Found at i:538151 original size:15 final size:15
Alignment explanation
Indices: 538131--538161 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
538121 AATTACCAAT
*
538131 TTCCATTGAAATATC
1 TTCCATTAAAATATC
538146 TTCCATTAAAATATC
1 TTCCATTAAAATATC
538161 T
1 T
538162 CATAGTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (15 bp):
TTCCATTAAAATATC
Found at i:539024 original size:24 final size:24
Alignment explanation
Indices: 538995--539049 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
538985 TGTAATACAA
*
538995 TATTAGTGCATTCACGCACTCCTG
1 TATTAGTGCATACACGCACTCCTG
* *
539019 TGTTAGTGCATACATGCACTCCTG
1 TATTAGTGCATACACGCACTCCTG
539043 TATTAGT
1 TATTAGT
539050 ACCTTTGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (24 bp):
TATTAGTGCATACACGCACTCCTG
Found at i:539907 original size:12 final size:12
Alignment explanation
Indices: 539890--539914 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
539880 ATAGTAACTG
539890 ATATATATGTAT
1 ATATATATGTAT
539902 ATATATATGTAT
1 ATATATATGTAT
539914 A
1 A
539915 ATTAGAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATATATATGTAT
Found at i:541838 original size:22 final size:22
Alignment explanation
Indices: 541808--541874 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
541798 AGTTGAGGGT
* *
541808 TACATAGGTCATTCGGGAAATA
1 TACAGAGGTCATTCGGGATATA
*
541830 TATAGAGGTCATTCGGGATATA
1 TACAGAGGTCATTCGGGATATA
* *
541852 TACATAGGTCCTTCGGGATATA
1 TACAGAGGTCATTCGGGATATA
541874 T
1 T
541875 TTCACATGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.31
Consensus pattern (22 bp):
TACAGAGGTCATTCGGGATATA
Found at i:545558 original size:18 final size:17
Alignment explanation
Indices: 545535--545568 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
545525 TAAATCAAAG
*
545535 GATTAAGGAGTTAAGAGA
1 GATTAAAGA-TTAAGAGA
545553 GATTAAAGATTAAGAG
1 GATTAAAGATTAAGAG
545569 TTTCTGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (17 bp):
GATTAAAGATTAAGAGA
Found at i:546612 original size:22 final size:22
Alignment explanation
Indices: 546550--546613 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
546540 AGTTGAGGGT
* *
546550 TACATAGGTCCTTTGGGACATA
1 TACATAGGTCCTTCGGGATATA
* *
546572 TACAGAGGTCCTTCAGGATATA
1 TACATAGGTCCTTCGGGATATA
*
546594 TACATAGGTCATTCGGGATA
1 TACATAGGTCCTTCGGGATA
546614 AATTTAACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (22 bp):
TACATAGGTCCTTCGGGATATA
Found at i:551479 original size:11 final size:10
Alignment explanation
Indices: 551455--551496 Score: 66
Period size: 10 Copynumber: 4.1 Consensus size: 10
551445 TCATGCTATG
*
551455 ATTGTTTGTA
1 ATTGTTTATA
551465 ATTGTTTCATA
1 ATTGTTT-ATA
551476 ATTGTTTATA
1 ATTGTTTATA
551486 ATTGTTTATA
1 ATTGTTTATA
551496 A
1 A
551497 CTCTCTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 21 0.70
11 9 0.30
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (10 bp):
ATTGTTTATA
Found at i:551481 original size:21 final size:20
Alignment explanation
Indices: 551455--551496 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
551445 TCATGCTATG
*
551455 ATTGTTTGTAATTGTTTCATA
1 ATTGTTTATAATTGTTT-ATA
551476 ATTGTTTATAATTGTTTATA
1 ATTGTTTATAATTGTTTATA
551496 A
1 A
551497 CTCTCTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (20 bp):
ATTGTTTATAATTGTTTATA
Found at i:551505 original size:21 final size:21
Alignment explanation
Indices: 551463--551505 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
551453 TGATTGTTTG
* *
551463 TAATTGTTTCATAATTGTTTA
1 TAATTGTTTCATAACTCTTTA
551484 TAATTGTTT-ATAACTCTCTTA
1 TAATTGTTTCATAACTCT-TTA
551505 T
1 T
551506 TTGCTCTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.28, C:0.09, G:0.07, T:0.56
Consensus pattern (21 bp):
TAATTGTTTCATAACTCTTTA
Found at i:552196 original size:80 final size:80
Alignment explanation
Indices: 552054--552213 Score: 257
Period size: 80 Copynumber: 2.0 Consensus size: 80
552044 TAACAGACAT
* *
552054 TAAACGAATGTTAAATGAACACTAAGTGAACACGTTCACTAATATTTAAACAAATATATTCATGA
1 TAAACGAATGTTAAATGAACACTAAGTGAACACGTTCACGAATATTTAAACAAACATATTCATGA
552119 ACAATAAACGAACAC
66 ACAATAAACGAACAC
* * * *
552134 TAAACGAATGTTAAATGAACGCTAAGTGAACACGTTCACGAGTATTTAAACGAACATGTTCATGA
1 TAAACGAATGTTAAATGAACACTAAGTGAACACGTTCACGAATATTTAAACAAACATATTCATGA
*
552199 ACAATAAATGAACAC
66 ACAATAAACGAACAC
552214 GCTCACAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.24
Consensus pattern (80 bp):
TAAACGAATGTTAAATGAACACTAAGTGAACACGTTCACGAATATTTAAACAAACATATTCATGA
ACAATAAACGAACAC
Found at i:562397 original size:2 final size:2
Alignment explanation
Indices: 562390--562423 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
562380 TAACAACGTG
562390 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
562424 TTTTGTTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:564600 original size:19 final size:19
Alignment explanation
Indices: 564550--564600 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
564540 AATAATAATA
*
564550 AAAATAAAAT-AATTGGAT
1 AAAATAAAATAAATTGAAT
*
564568 GAAA-AAAATGAAATTGAAT
1 AAAATAAAAT-AAATTGAAT
564587 AAAATAAAATAAAT
1 AAAATAAAATAAAT
564601 GAAGATAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 5 0.19
18 3 0.11
19 14 0.52
20 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.24
Consensus pattern (19 bp):
AAAATAAAATAAATTGAAT
Found at i:564729 original size:21 final size:21
Alignment explanation
Indices: 564699--564818 Score: 66
Period size: 21 Copynumber: 5.5 Consensus size: 21
564689 AAATATGATG
* *
564699 AAAATAAATAAATAGTATAAAT
1 AAAAT-AATAAAAAATATAAAT
*
564721 AAAATAATAAAAAATATATAT
1 AAAATAATAAAAAATATAAAT
* * **
564742 AAAAAAATATAAAAATGTATGT
1 AAAATAATA-AAAAATATAAAT
*
564764 ATAAT-ATAATAAAATACTAAAT
1 AAAATAATAA-AAAATA-TAAAT
*
564786 AGTAATAATAATAATAA-ATAAAT
1 A-AAATAATAA-AA-AATATAAAT
*
564809 GAAA-AATAAA
1 AAAATAATAAA
564819 TATACATATA
Statistics
Matches: 79, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
20 2 0.03
21 34 0.43
22 24 0.30
23 9 0.11
24 8 0.10
25 2 0.03
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.28
Consensus pattern (21 bp):
AAAATAATAAAAAATATAAAT
Found at i:564742 original size:25 final size:23
Alignment explanation
Indices: 564701--564756 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 23
564691 ATATGATGAA
*
564701 AATAAATAAATAGTATAAATAAAAT
1 AATAAA-AAATAATATAAA-AAAAT
564726 AATAAAAAATATATATAAAAAAAT
1 AATAAAAAATA-ATATAAAAAAAT
564750 -ATAAAAA
1 AATAAAAA
564757 TGTATGTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 7 0.24
24 10 0.34
25 12 0.41
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (23 bp):
AATAAAAAATAATATAAAAAAAT
Found at i:564745 original size:12 final size:11
Alignment explanation
Indices: 564721--564757 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
564711 TAGTATAAAT
564721 AAAATAATA-A
1 AAAATAATATA
564731 AAAATATATATA
1 AAAATA-ATATA
564743 AAAA-AATATA
1 AAAATAATATA
564753 AAAAT
1 AAAAT
564758 GTATGTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 15 0.62
11 4 0.17
12 5 0.21
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATAATATA
Found at i:564766 original size:24 final size:25
Alignment explanation
Indices: 564701--564772 Score: 78
Period size: 24 Copynumber: 2.9 Consensus size: 25
564691 ATATGATGAA
564701 AATAAATAAATA-GTATAAATAAAAT
1 AATAAA-AAATATGTATAAATAAAAT
*
564726 AATAAAAAATATATATAAA-AAAAT
1 AATAAAAAATATGTATAAATAAAAT
*
564750 -ATAAAAATGTATGTATAATATAA
1 AATAAAAA-ATATGTATAA-ATAA
564773 TAAAATACTA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 7 0.17
24 18 0.45
25 13 0.32
26 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (25 bp):
AATAAAAAATATGTATAAATAAAAT
Found at i:565534 original size:37 final size:37
Alignment explanation
Indices: 565485--565577 Score: 105
Period size: 37 Copynumber: 2.5 Consensus size: 37
565475 ATGCTTGTGG
* * * *
565485 ATCCTATCTTTAGAAGTTTAAATAATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATAATAGCAAAACTCT
* * ** *
565522 ATCTTATTTTTAGGAGTTTGAATCGTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATAATAGCAAAACTCT
565559 ATCCTATTTTTAGGAGTTT
1 ATCCTATTTTTAGGAGTTT
565578 GAATCCTAGT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATAATAGCAAAACTCT
Found at i:566643 original size:106 final size:106
Alignment explanation
Indices: 566336--567430 Score: 1654
Period size: 106 Copynumber: 10.3 Consensus size: 106
566326 AGCATTGTTC
* * * * *
566336 CGAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAATCGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* * *
566401 ACCAGTC-GTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCT
66 ACCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * *
566442 CGAGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTC-CAAATTGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* *
566506 ACCAGCGGTCCCTTCGTCGTGAAATTGAACTTGCATTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
*
566547 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
566612 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * ** *
566653 CGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTAAAATTAAGAAGTTGTTTGTTGATA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* * *
566718 ACCAGCGGTTCTTTCGTCGTGAAGTTGAACTTGCATTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * *
566759 GGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTATGAAATTGGGAAGTTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
566824 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * *
566865 GGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
566930 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * * *
566971 GGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTATTTATTGACA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
*
567036 ACCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * *
567077 TGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* *
567142 ACCAACGGTCCCTTCGTCGTGAAGTTGAACCTGCGTTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * * * *
567183 GGAGTCCAATATCCTTTGTTGTGAAGTTAAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* *
567248 ACCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * *
567289 GGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAATTTGGGAAGTTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* * *
567354 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * *
567395 CGAGTGGCACAATATCCTCCGTCGTGGAGTTGAAAT
1 CGAGT--C-CAATATCCTTCGTTGTGAAGTTGAAAT
567431 CGCGGATAGC
Statistics
Matches: 906, Mismatches: 78, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
104 1 0.00
105 94 0.10
106 787 0.87
108 1 0.00
109 23 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
Found at i:573421 original size:17 final size:17
Alignment explanation
Indices: 573392--573465 Score: 53
Period size: 18 Copynumber: 4.3 Consensus size: 17
573382 ATTATGATGA
*
573392 AAATAAATAAATAGTAT
1 AAATAAATAAATAATAT
573409 AAATAAA-ATAATAATAT
1 AAATAAATA-AATAATAT
* *
573426 -AATATATATATATATAT
1 AAATAAATAAATA-ATAT
* * *
573443 ATATATATATATATATAT
1 AAATAAATAAATA-ATAT
573461 AAATA
1 AAATA
573466 TAAAAATGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
16 9 0.19
17 19 0.40
18 20 0.42
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (17 bp):
AAATAAATAAATAATAT
Found at i:573434 original size:2 final size:2
Alignment explanation
Indices: 573422--573467 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
573412 TAAAATAATA
*
573422 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
573463 AT AT A
1 AT AT A
573468 AAAATGTATG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:573468 original size:6 final size:6
Alignment explanation
Indices: 573406--573469 Score: 53
Period size: 6 Copynumber: 11.0 Consensus size: 6
573396 AAATAAATAG
* * * *
573406 TATAAA TA-AAA TA-ATAA TAT-AA TATATA TATATA TATATA TATATA
1 TATAAA TATAAA TATA-AA TATAAA TATAAA TATAAA TATAAA TATAAA
*
573452 TATATA TATAAA TATAAA
1 TATAAA TATAAA TATAAA
573470 AATGTATGTA
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
5 11 0.21
6 42 0.79
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (6 bp):
TATAAA
Found at i:573727 original size:25 final size:25
Alignment explanation
Indices: 573677--573728 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
573667 AAATAATAAT
* * *
573677 ATAATATATATATAATAATAGGAAA
1 ATAATATATATATAACAAAAGAAAA
573702 ATAATATA-ATATAACACAAAGAAAA
1 ATAATATATATATAACA-AAAGAAAA
573727 AT
1 AT
573729 GAAAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (25 bp):
ATAATATATATATAACAAAAGAAAA
Found at i:574286 original size:37 final size:37
Alignment explanation
Indices: 574193--574294 Score: 150
Period size: 37 Copynumber: 2.8 Consensus size: 37
574183 ATGCTTGTGG
* * ** *
574193 ATCCTATCTTTAGGAGTTTAAATAATAGTAAAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGAAAAACTCT
*
574230 ATCCTATTTTTAGGAGTTTGAATCCTAGAAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGAAAAACTCT
574267 ATCCTATTTTTAGGAGTTTGAATCCTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAG
574295 TAGGACGAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGAAAAACTCT
Found at i:581833 original size:12 final size:12
Alignment explanation
Indices: 581816--581860 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
581806 ACTCTAAAAG
581816 AAAAAAGAAGAA
1 AAAAAAGAAGAA
*
581828 AAAAAATAAGAA
1 AAAAAAGAAGAA
581840 AAGAACAAGAAGAA
1 AA-AA-AAGAAGAA
*
581854 GAAAAAG
1 AAAAAAG
581861 GTAGAAATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 16 0.57
13 4 0.14
14 8 0.29
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (12 bp):
AAAAAAGAAGAA
Found at i:598754 original size:24 final size:24
Alignment explanation
Indices: 598722--598794 Score: 137
Period size: 24 Copynumber: 3.0 Consensus size: 24
598712 AGTCTTCTTG
598722 ATGATGTATAAAACATCTGTGTAC
1 ATGATGTATAAAACATCTGTGTAC
598746 ATGATGTATAAAACATCTGTGTAC
1 ATGATGTATAAAACATCTGTGTAC
*
598770 ATGATGTATAAAACATCTATGTAC
1 ATGATGTATAAAACATCTGTGTAC
598794 A
1 A
598795 AAGTCAAGCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (24 bp):
ATGATGTATAAAACATCTGTGTAC
Found at i:601649 original size:342 final size:345
Alignment explanation
Indices: 601012--601693 Score: 940
Period size: 342 Copynumber: 2.0 Consensus size: 345
601002 TGGATAGTCG
* * *
601012 GTCGGAGCGGACCATTCAGATATTGGAGGATATGCTAAGGGCATGTGTGATTAAATTCAAGGGAT
1 GTCGGAGCAGACCATTCAGATATTGAAGGATATGCTAAGGGAATGTGTGATTAAATTCAAGGGAT
* *
601077 CATGGGAAAAATATTCACCTATAACATAATTTTCTCATAATAACAACTATCAATCAAGCATCAAG
66 CATGGGAAAAATATTCACCTATAACAAAATTTGCTCATAATAACAACTATCAATCAAGCATCAAG
* * * * * * * *
601142 ATAGCTCTGTTTGAAGCCTTATATATAAGAAAGTTTCTAACACCATTAAATTGGTTCGTGCTAAA
131 ATAGCTCCGTATAAAGCCTTATATACAAGAAAGTGTCGAACACCATTAAAATGGTTCGAGCTAAA
* *
601207 AGATCGAGATCTAGTTGGCCCTAACTTGATGAAATAGATGGAAGATAATGTGATGATTATTCAAG
196 AGATCGAGATCTAGTTGGCCCTAACTTGATGAAAGAGATGGAAGATAAAGTGATGATTATTCAAG
* * *
601272 ATAACCTTAAGATAGTTTTCGATCGACATAATTCTTATGCAGTCTTG-AAA-AAAA-AGATTGAA
261 ATAACCTTAAGATAGTTTTCAATCGACAGAATTCTTATGCAGACTTGAAAAGAAAAGAGATTGAA
601334 TATCAGGAAGGTGATGGTTA
326 TATCAGGAAGGTGATGGTTA
* * * *
601354 GTCGGAGTAGACCATTTAGATATTGAAGGATATGCTAAGGGAATGTGTGTTTGAATTCAAGGGAT
1 GTCGGAGCAGACCATTCAGATATTGAAGGATATGCTAAGGGAATGTGTGATTAAATTCAAGGGAT
* ** * * * * *
601419 CATGGGAAAAGTATTTTCCTTTAACAAAATTTGCTTATAATAACATCTATCGATCGAGCATCAAG
66 CATGGGAAAAATATTCACCTATAACAAAATTTGCTCATAATAACAACTATCAATCAAGCATCAAG
* * *
601484 ATGGCTCCGTATAAAGCCTTATATGCGAGAAAGTGTCGAACACCATTAAAATGGTTCGAGCTAAA
131 ATAGCTCCGTATAAAGCCTTATATACAAGAAAGTGTCGAACACCATTAAAATGGTTCGAGCTAAA
* * * * * *
601549 GGATCGAGATCTAGTTGGCCCTGACTTTATGAAAGAGATTGATGATAAAGTGATGATTATTCAAT
196 AGATCGAGATCTAGTTGGCCCTAACTTGATGAAAGAGATGGAAGATAAAGTGATGATTATTCAAG
* ** *
601614 ATAATCTTAAGATAG-TTTCTAATCGGTAGAATTCTTATGTAGACTTGAAAAGAAAAGAGATTGA
261 ATAACCTTAAGATAGTTTTC-AATCGACAGAATTCTTATGCAGACTTGAAAAGAAAAGAGATTGA
601678 ATATCAGGAAGGTGAT
325 ATATCAGGAAGGTGAT
601694 AAGGTATTTC
Statistics
Matches: 293, Mismatches: 43, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
341 4 0.01
342 259 0.88
343 3 0.01
344 4 0.01
345 23 0.08
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (345 bp):
GTCGGAGCAGACCATTCAGATATTGAAGGATATGCTAAGGGAATGTGTGATTAAATTCAAGGGAT
CATGGGAAAAATATTCACCTATAACAAAATTTGCTCATAATAACAACTATCAATCAAGCATCAAG
ATAGCTCCGTATAAAGCCTTATATACAAGAAAGTGTCGAACACCATTAAAATGGTTCGAGCTAAA
AGATCGAGATCTAGTTGGCCCTAACTTGATGAAAGAGATGGAAGATAAAGTGATGATTATTCAAG
ATAACCTTAAGATAGTTTTCAATCGACAGAATTCTTATGCAGACTTGAAAAGAAAAGAGATTGAA
TATCAGGAAGGTGATGGTTA
Found at i:604333 original size:72 final size:72
Alignment explanation
Indices: 604211--604355 Score: 236
Period size: 72 Copynumber: 2.0 Consensus size: 72
604201 GTACTTTGTG
* **
604211 TAATGAAGCACTATGTATGTAATTTCCATACTCGGTGTATGACGGTGTTGTAATACCATAAATAA
1 TAATAAAGCACTATGTATGTAATCGCCATACTCGGTGTATGACGGTGTTGTAATACCATAAATAA
604276 GGTGGTA
66 GGTGGTA
* * *
604283 TAATAAAGCACTATGTATGTAATCGGCATACTTGGTGTATGATGGTGTTGTAATACCATAAATAA
1 TAATAAAGCACTATGTATGTAATCGCCATACTCGGTGTATGACGGTGTTGTAATACCATAAATAA
604348 GGTGGTA
66 GGTGGTA
604355 T
1 T
604356 TGTAGTAGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (72 bp):
TAATAAAGCACTATGTATGTAATCGCCATACTCGGTGTATGACGGTGTTGTAATACCATAAATAA
GGTGGTA
Found at i:606627 original size:35 final size:35
Alignment explanation
Indices: 606588--606666 Score: 108
Period size: 33 Copynumber: 2.3 Consensus size: 35
606578 CTGTTGAGCA
*
606588 AACAGATAAGGTATACACATTAATTTTAAGCTCAC
1 AACAGATAAGGTATACACATTAATTTCAAGCTCAC
* * *
606623 AACAG--CAGGTATATACATTAATTTCAAGCTCCC
1 AACAGATAAGGTATACACATTAATTTCAAGCTCAC
606656 AACAGATAAGG
1 AACAGATAAGG
606667 AAAATTATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
33 29 0.78
35 8 0.22
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (35 bp):
AACAGATAAGGTATACACATTAATTTCAAGCTCAC
Found at i:616040 original size:19 final size:18
Alignment explanation
Indices: 616010--616067 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 18
616000 AAAGAAGAAG
*
616010 AAGAAATGAGAGTTGAAA
1 AAGAATTGAGAGTTGAAA
616028 AAGACATTGAGAGCATTGAAAA
1 AAGA-ATTGAGAG--TTG-AAA
616050 AAGAATTGAGAG-TGAAA
1 AAGAATTGAGAGTTGAAA
616067 A
1 A
616068 TGAGCACACT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
17 4 0.11
18 6 0.17
19 7 0.20
21 11 0.31
22 7 0.20
ACGTcount: A:0.53, C:0.03, G:0.26, T:0.17
Consensus pattern (18 bp):
AAGAATTGAGAGTTGAAA
Found at i:616046 original size:21 final size:21
Alignment explanation
Indices: 616010--616061 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
616000 AAAGAAGAAG
*
616010 AAGAAATGAGAG--TTG-AAA
1 AAGAATTGAGAGCATTGAAAA
616028 AAGACATTGAGAGCATTGAAAA
1 AAGA-ATTGAGAGCATTGAAAA
616050 AAGAATTGAGAG
1 AAGAATTGAGAG
616062 TGAAAATGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.14
19 7 0.24
21 11 0.38
22 7 0.24
ACGTcount: A:0.52, C:0.04, G:0.27, T:0.17
Consensus pattern (21 bp):
AAGAATTGAGAGCATTGAAAA
Found at i:617282 original size:17 final size:17
Alignment explanation
Indices: 617260--617312 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
617250 TGAATAAATT
617260 TAGTTCATTAATTAAAC
1 TAGTTCATTAATTAAAC
* *
617277 TAGTTCATTCATCAAAC
1 TAGTTCATTAATTAAAC
617294 TAGTTCATTTAA-TAAAC
1 TAGTTCA-TTAATTAAAC
617311 TA
1 TA
617313 AATTTTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 28 0.90
18 3 0.10
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.40
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:617301 original size:52 final size:52
Alignment explanation
Indices: 617205--617309 Score: 122
Period size: 52 Copynumber: 2.0 Consensus size: 52
617195 ATTTATGCAT
* * * *
617205 ATTTAGATCATTTAGTAAGCTACTTCATTCATGCATCTATTTCATTGAATAA
1 ATTTAGATCATTAAGTAAACTACTTCATTCATGCAACTAGTTCATTGAATAA
* * * *
617257 ATTTAGTTCATTAATTAAACTAGTTCATTCAT-CAAACTAGTTCATTTAATAA
1 ATTTAGATCATTAAGTAAACTACTTCATTCATGC-AACTAGTTCATTGAATAA
617309 A
1 A
617310 CTAAATTTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
51 1 0.02
52 43 0.98
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (52 bp):
ATTTAGATCATTAAGTAAACTACTTCATTCATGCAACTAGTTCATTGAATAA
Found at i:621387 original size:72 final size:72
Alignment explanation
Indices: 621265--621409 Score: 236
Period size: 72 Copynumber: 2.0 Consensus size: 72
621255 GTACTTTGTG
* **
621265 TAATGAAGCACTATGTATGTAATTTCCATACTCGGTGTATGACGGTGTTGTAATACCATAAATAA
1 TAATAAAGCACTATGTATGTAATCGCCATACTCGGTGTATGACGGTGTTGTAATACCATAAATAA
621330 GGTGGTA
66 GGTGGTA
* * *
621337 TAATAAAGCACTATGTATGTAATCGGCATACTTGGTGTATGATGGTGTTGTAATACCATAAATAA
1 TAATAAAGCACTATGTATGTAATCGCCATACTCGGTGTATGACGGTGTTGTAATACCATAAATAA
621402 GGTGGTA
66 GGTGGTA
621409 T
1 T
621410 TGTAGTAGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (72 bp):
TAATAAAGCACTATGTATGTAATCGCCATACTCGGTGTATGACGGTGTTGTAATACCATAAATAA
GGTGGTA
Found at i:623655 original size:35 final size:35
Alignment explanation
Indices: 623616--623694 Score: 110
Period size: 33 Copynumber: 2.3 Consensus size: 35
623606 CTGTTGGGGA
623616 AACAGATAAGGTATACACATTAATTAT-AAGCTCAC
1 AACAGATAAGGTATACACATTAATT-TCAAGCTCAC
* *
623651 AACAG--CAGGTATATACATTAATTTCAAGCTCAC
1 AACAGATAAGGTATACACATTAATTTCAAGCTCAC
623684 AACAGATAAGG
1 AACAGATAAGG
623695 AAAATTATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
32 1 0.03
33 29 0.76
35 8 0.21
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (35 bp):
AACAGATAAGGTATACACATTAATTTCAAGCTCAC
Found at i:628482 original size:30 final size:30
Alignment explanation
Indices: 628446--628514 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
628436 CCTAGGGAGT
628446 GCGCAAGGTACTTTAAATTGACTAGTTTGG
1 GCGCAAGGTACTTTAAATTGACTAGTTTGG
628476 GCGCAAGGTACTTTAAATTGACTAGTTTGG
1 GCGCAAGGTACTTTAAATTGACTAGTTTGG
*
628506 GCACAAGGT
1 GCGCAAGGT
628515 CTGACACTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (30 bp):
GCGCAAGGTACTTTAAATTGACTAGTTTGG
Found at i:637921 original size:5 final size:5
Alignment explanation
Indices: 637291--637919 Score: 921
Period size: 5 Copynumber: 127.8 Consensus size: 5
637281 TTATTATATT
* *
637291 ACAAT ACAAT ACAAC AC-A- ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
1 ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
637339 ACAAC ACAAC ACAAC ACAAC -CAAC ACAAC ACAAAC ACAAC ACAAC AACACAC
1 ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC AC-AAC ACAAC ACAAC -ACA-AC
637391 ACAAC AACAAC ACAAC ACAAC ACAAC A-AAC ACACAC ACACAC ACAAC
1 ACAAC -ACAAC ACAAC ACAAC ACAAC ACAAC ACA-AC ACA-AC ACAAC
637438 ACAAC AC-AC ACAAC ACAAC ACAAC AC-AC AACAA- A-AAC ACAAC ACAAC
1 ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC -ACAAC ACAAC ACAAC ACAAC
637485 -CAAC A-ACAC ACAAC ACAAC ACAAC A-AAC ACAAC -CAAC ACAAC ACAA-
1 ACAAC ACA-AC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
637531 A-AAC ACAAC ACAAC ACAAC ACAAC ACAAAC ACAAC ACAAC ACAAC AC-AC
1 ACAAC ACAAC ACAAC ACAAC ACAAC AC-AAC ACAAC ACAAC ACAAC ACAAC
637580 A-ACAC ACAAAC ACAAC ACAAC ACAAC A-AAC ACAAC ACAAAC ACAAC
1 ACA-AC AC-AAC ACAAC ACAAC ACAAC ACAAC ACAAC AC-AAC ACAAC
637626 ACAAC AC--C ACAAC ACAAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
1 ACAAC ACAAC ACAAC AC-AAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
637675 AC-AC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC AC-AC ACAAC
1 ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
637723 ACAAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
1 AC-AAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
637774 ACAAC ACAAC AC-A- ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
1 ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
637822 ACAA- AC-AC ACAAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
1 ACAAC ACAAC AC-AAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC
*
637871 ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAT ACAA
1 ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC ACAA
637920 TAAAATATAA
Statistics
Matches: 583, Mismatches: 2, Indels: 78
0.88 0.00 0.12
Matches are distributed among these distances:
3 12 0.02
4 54 0.09
5 457 0.78
6 57 0.10
7 3 0.01
ACGTcount: A:0.61, C:0.39, G:0.00, T:0.00
Consensus pattern (5 bp):
ACAAC
Found at i:639520 original size:274 final size:276
Alignment explanation
Indices: 639027--639544 Score: 880
Period size: 274 Copynumber: 1.9 Consensus size: 276
639017 GAAACAAGGT
* * * *
639027 TTATACCTTGTGGGGGTTACGCTTTTGTATGTATGAAGTTTGTGTAGTTCCTTTTTCATGCTAGT
1 TTATACCTTGTAGGGGTTACACTTTTGTATGTAAGAAGTTTGTGTAGATCCTTTTTCATGCTAGT
* * * *
639092 GGGCACTCTTTTCCTCCATATAGGATTAGGGAGGTTTTTAACGAGGTTCACTAATCGAGTTTAGG
66 GGGCACTCTTTTCCTCCAGATAGGATTAGGAAGATTTTTAACAAGGTTCACTAATCGAGTTTAGG
*
639157 AGCTTTGTGATTCAATAAATAAACCATAATTTGCCGAGCAAAAAAGAATATAAACAAAAACATGA
131 AGCTTTGTGATTCAATAAATAAACCATAATTTGCCGAGCAAAAAAGAAAATAAACAAAAACATGA
639222 TTTCATACCAAAGAACCAATTTTACATGATAAATTTAT-ATCC-TCACTCAAACAATATAAAACA
196 TTTCATACCAAAGAACCAATTTTACATGATAAATTTATAATCCTTCACTCAAACAATATAAAACA
639285 TTTCACATATAGCTTA
261 TTTCACATATAGCTTA
* *
639301 TTATACCTTTTAGGGGTTACACTTTTGTATGTAAGAAGTTTGTGTAGATCCTTTTTTC-TGTTAG
1 TTATACCTTGTAGGGGTTACACTTTTGTATGTAAGAAGTTTGTGTAGATCC-TTTTTCATGCTAG
*
639365 TGGGCACTCTTTTCCTCTAGATAGGATTAGGAAGATTTTTAACAAGGTTCACTAATCGAGTTTAG
65 TGGGCACTCTTTTCCTCCAGATAGGATTAGGAAGATTTTTAACAAGGTTCACTAATCGAGTTTAG
*
639430 GAGTTTTGTGATTCAATAAATAAACCATAATTTGCCGAGCAAAAAAGAAAATAAACAAAAACATG
130 GAGCTTTGTGATTCAATAAATAAACCATAATTTGCCGAGCAAAAAAGAAAATAAACAAAAACATG
*
639495 ATTTCATACCAAAGAACCTATTTTACATGATAAATTTATAATCCTTCACT
195 ATTTCATACCAAAGAACCAATTTTACATGATAAATTTATAATCCTTCACT
639545 TGACTTTAAT
Statistics
Matches: 227, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
274 212 0.93
275 10 0.04
276 5 0.02
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (276 bp):
TTATACCTTGTAGGGGTTACACTTTTGTATGTAAGAAGTTTGTGTAGATCCTTTTTCATGCTAGT
GGGCACTCTTTTCCTCCAGATAGGATTAGGAAGATTTTTAACAAGGTTCACTAATCGAGTTTAGG
AGCTTTGTGATTCAATAAATAAACCATAATTTGCCGAGCAAAAAAGAAAATAAACAAAAACATGA
TTTCATACCAAAGAACCAATTTTACATGATAAATTTATAATCCTTCACTCAAACAATATAAAACA
TTTCACATATAGCTTA
Found at i:647088 original size:17 final size:17
Alignment explanation
Indices: 647062--647100 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
647052 TAGTTTGGGA
*
647062 ATATATTTTTGAAACAT
1 ATATAATTTTGAAACAT
*
647079 ATATAATTTTGAAATAT
1 ATATAATTTTGAAACAT
647096 ATATA
1 ATATA
647101 TTATATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (17 bp):
ATATAATTTTGAAACAT
Found at i:647112 original size:23 final size:24
Alignment explanation
Indices: 647078--647133 Score: 96
Period size: 23 Copynumber: 2.3 Consensus size: 24
647068 TTTTGAAACA
647078 TATATAATTTTGAAATATATATA-T
1 TATAT-ATTTTGAAATATATATATT
647102 TATATATTTTGAAATATATATATT
1 TATATATTTTGAAATATATATATT
647126 TATATATT
1 TATATATT
647134 ATTATTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 17 0.55
24 14 0.45
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (24 bp):
TATATATTTTGAAATATATATATT
Found at i:648569 original size:18 final size:19
Alignment explanation
Indices: 648526--648570 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
648516 CATTGTATTA
*
648526 ATTTTTTT-ATTTACCTTT
1 ATTTTTTTAATTTACATTT
*
648544 -TTTATTTAATTTA-ATTT
1 ATTTTTTTAATTTACATTT
648561 ATTTTTTTAA
1 ATTTTTTTAA
648571 CCTTATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.71
Consensus pattern (19 bp):
ATTTTTTTAATTTACATTT
Found at i:657638 original size:21 final size:20
Alignment explanation
Indices: 657613--657651 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
657603 TATCAAAGTC
*
657613 TTTGTTGAAGCCATGAAATCT
1 TTTGTCGAAGCCAT-AAATCT
*
657634 TTTGTCGAGGCCATAAAT
1 TTTGTCGAAGCCATAAAT
657652 TCCTGCAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (20 bp):
TTTGTCGAAGCCATAAATCT
Found at i:668061 original size:16 final size:16
Alignment explanation
Indices: 668042--668074 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
668032 AAAATAAAAG
*
668042 TAAAAATATAAACATA
1 TAAAAACATAAACATA
668058 TAAAAACATAAACATA
1 TAAAAACATAAACATA
668074 T
1 T
668075 TTTTTTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (16 bp):
TAAAAACATAAACATA
Found at i:670061 original size:26 final size:27
Alignment explanation
Indices: 670025--670079 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
670015 GTAGTGCTTG
*
670025 CACATAAGGTCGTTCCCACCATA-ATA
1 CACATAAGGTCGTGCCCACCATATATA
670051 CACATAAGGTCGTGCCCACCATATATA
1 CACATAAGGTCGTGCCCACCATATATA
670078 CA
1 CA
670080 TAGTGTCCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.35, C:0.31, G:0.13, T:0.22
Consensus pattern (27 bp):
CACATAAGGTCGTGCCCACCATATATA
Found at i:679189 original size:13 final size:13
Alignment explanation
Indices: 679171--679195 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
679161 CTTTTTTGCT
679171 TTATAAATTTTAA
1 TTATAAATTTTAA
679184 TTATAAATTTTA
1 TTATAAATTTTA
679196 TTACAAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATAAATTTTAA
Found at i:682963 original size:46 final size:46
Alignment explanation
Indices: 682910--683171 Score: 346
Period size: 46 Copynumber: 5.6 Consensus size: 46
682900 TTTAAATTTT
* * * *
682910 ATTTTATTTATGGAATCCTTTCATGCCTTAATTCATCATTTCTTGC
1 ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* * *
682956 ATTTTATTTATGGCATCATTTCATGCCTTAATACATCCTTTCGTGC
1 ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
683002 ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCC-TTCTATGC
1 ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTC-ATGC
* *
683048 ATTTTATTTATGGCATCCTTTCATGCATTTTATTTATGGCATCCTTTCATGA
1 ATTTTATTTATGGCATCCTTTCATGC--CTTA---AT-GCATCCTTTCATGC
* *
683100 ATTTTATTTATGTCATCCTTTCATGCCTTAATGCATCCTTTCATGT
1 ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
*
683146 ATTTTATTTATGGAATCCTTTCATGC
1 ATTTTATTTATGGCATCCTTTCATGC
683172 ATTTTATTGA
Statistics
Matches: 193, Mismatches: 15, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
45 3 0.02
46 143 0.74
47 2 0.01
48 3 0.02
50 3 0.02
51 2 0.01
52 34 0.18
53 3 0.02
ACGTcount: A:0.21, C:0.20, G:0.10, T:0.48
Consensus pattern (46 bp):
ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
Found at i:683019 original size:26 final size:26
Alignment explanation
Indices: 682943--683277 Score: 282
Period size: 26 Copynumber: 14.0 Consensus size: 26
682933 TGCCTTAATT
* *
682943 CATCATTTCTTGCATTTTATTTATGG
1 CATCCTTTCATGCATTTTATTTATGG
* * *
682969 CATCATTTCATGC--CTTA---AT-A
1 CATCCTTTCATGCATTTTATTTATGG
*
682989 CATCCTTTCGTGCATTTTATTTATGG
1 CATCCTTTCATGCATTTTATTTATGG
*
683015 CATCCTTTCATGC--CTTA---AT-G
1 CATCCTTTCATGCATTTTATTTATGG
683035 CATCC-TTCTATGCATTTTATTTATGG
1 CATCCTTTC-ATGCATTTTATTTATGG
683061 CATCCTTTCATGCATTTTATTTATGG
1 CATCCTTTCATGCATTTTATTTATGG
* *
683087 CATCCTTTCATGAATTTTATTTATGT
1 CATCCTTTCATGCATTTTATTTATGG
*
683113 CATCCTTTCATGC--CTTA---AT-G
1 CATCCTTTCATGCATTTTATTTATGG
*
683133 CATCCTTTCATGTATTTTATTTATGG
1 CATCCTTTCATGCATTTTATTTATGG
* *
683159 AATCCTTTCATGCATTTTATTGATGG
1 CATCCTTTCATGCATTTTATTTATGG
*
683185 CATCCTTTCATGC--CTTA---AT-G
1 CATCCTTTCATGCATTTTATTTATGG
*
683205 CATCCTTTAATGCATTTTATTTATGG
1 CATCCTTTCATGCATTTTATTTATGG
* *
683231 CATCCTTTCAGGC--CTTA---AT-G
1 CATCCTTTCATGCATTTTATTTATGG
*
683251 CATCCATTCATGCATTTTATTTATGG
1 CATCCTTTCATGCATTTTATTTATGG
683277 C
1 C
683278 TTCATGCCTT
Statistics
Matches: 247, Mismatches: 30, Indels: 64
0.72 0.09 0.19
Matches are distributed among these distances:
19 3 0.01
20 58 0.23
21 10 0.04
22 15 0.06
24 15 0.06
25 10 0.04
26 133 0.54
27 3 0.01
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (26 bp):
CATCCTTTCATGCATTTTATTTATGG
Found at i:683039 original size:20 final size:20
Alignment explanation
Indices: 682968--683041 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 20
682958 TTTATTTATG
*
682968 GCATCATTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* * *
682988 ACATCCTTTCGTGCATTTTATTTAT
1 GCATCCTTTCATGC--CTTA---AT
683013 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
683034 GCATCCTT
1 GCATCCTT
683042 CTATGCATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
20 19 0.46
21 2 0.05
22 3 0.07
24 3 0.07
25 2 0.05
26 12 0.29
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:683136 original size:72 final size:71
Alignment explanation
Indices: 682956--683240 Score: 348
Period size: 72 Copynumber: 4.0 Consensus size: 71
682946 CATTTCTTGC
* * *
682956 ATTTTATTTATGGCATCATTTCATGCCTTAATACATCCTTTCGTGCATTTTATTTATGGCATCCT
1 ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTATTTATGGCATCCT
683021 TTCATG
66 TTCATG
** *
683027 -CCTTA---AT-GCATCC-TTCTATGCATTTTATTTATGGCATCCTTTCATGCATTTTATTTATG
1 ATTTTATTTATGGCATCCTTTC-ATGC--CTTA---AT-GCATCCTTTCATGCATTTTATTTATG
683086 GCATCCTTTCATG
59 GCATCCTTTCATG
* * *
683099 AATTTTATTTATGTCATCCTTTCATGCCTTAATGCATCCTTTCATGTATTTTATTTATGGAATCC
1 -ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTATTTATGGCATCC
683164 TTTCATG
65 TTTCATG
* *
683171 CATTTTATTGATGGCATCCTTTCATGCCTTAATGCATCCTTTAATGCATTTTATTTATGGCATCC
1 -ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTATTTATGGCATCC
683236 TTTCA
65 TTTCA
683241 GGCCTTAATG
Statistics
Matches: 182, Mismatches: 18, Indels: 27
0.80 0.08 0.12
Matches are distributed among these distances:
65 3 0.02
66 9 0.05
67 2 0.01
68 3 0.02
70 3 0.02
71 2 0.01
72 138 0.76
73 2 0.01
74 3 0.02
76 3 0.02
77 2 0.01
78 9 0.05
79 3 0.02
ACGTcount: A:0.21, C:0.20, G:0.11, T:0.48
Consensus pattern (71 bp):
ATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTATTTATGGCATCCT
TTCATG
Found at i:683209 original size:20 final size:20
Alignment explanation
Indices: 683184--683304 Score: 82
Period size: 20 Copynumber: 5.7 Consensus size: 20
683174 TTTATTGATG
683184 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
683204 GCATCCTTTAATGCATTTTATTTAT
1 GCATCCTTTCATGC--CTTA---AT
*
683229 GGCATCCTTTCAGGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* * *
683250 GCATCCATTCATGCATTTTAT
1 GCATCCTTTCATGC-CTTAAT
** *
683271 TTATGGC-TTCATGCCTTAAT
1 GCAT-CCTTTCATGCCTTAAT
683291 GCATCCTTTCATGC
1 GCATCCTTTCATGC
683305 ATTTTATTTA
Statistics
Matches: 75, Mismatches: 17, Indels: 18
0.68 0.15 0.16
Matches are distributed among these distances:
19 1 0.01
20 38 0.51
21 15 0.20
22 4 0.05
24 3 0.04
25 2 0.03
26 12 0.16
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:683210 original size:46 final size:46
Alignment explanation
Indices: 683160--683316 Score: 243
Period size: 46 Copynumber: 3.5 Consensus size: 46
683150 TATTTATGGA
*
683160 ATCCTTTCATGCATTTTATTGATGGCATCCTTTCATGCCTTAATGC
1 ATCCTTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATGC
* *
683206 ATCCTTTAATGCATTTTATTTATGGCATCCTTTCAGGCCTTAATGC
1 ATCCTTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATGC
*
683252 ATCCATTCATGCATTTTATTTATGG----C-TTCATGCCTTAATGC
1 ATCCTTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATGC
683293 ATCCTTTCATGCATTTTATTTATG
1 ATCCTTTCATGCATTTTATTTATG
683317 TATTCGGTTT
Statistics
Matches: 104, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
41 37 0.36
42 1 0.01
46 66 0.63
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.45
Consensus pattern (46 bp):
ATCCTTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATGC
Found at i:687646 original size:46 final size:46
Alignment explanation
Indices: 687581--688043 Score: 572
Period size: 46 Copynumber: 10.2 Consensus size: 46
687571 TTAAATTTCA
* *
687581 TTTATTTATGGCATCCTTTCATCCCTTAATGCATCATTTCATGCAT
1 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
* * * **
687627 TTCATTTATGGTATTCTTTCATGCCTTAATGCATCCTTTTGTGCAT
1 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
* ** *
687673 TTTATTTATGGCATCCTTTCATGCCTTAATTCATTATTTCAAGCAT
1 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
* ** * *
687719 TTTATTTATGACATCCTTTCATAACTTAATGCATCATTTCAAGCAT
1 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
* *
687765 TTTATTTATGGCATACTTTCATGCCTTAATGCATCATTTCATGCAT
1 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
687811 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC--
1 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
* * * *
687855 CTTA---AT-GCATCATTTCATGCATTTTATTTATGGCACCCTTTCATGCAT
1 TTTATTTATGGCATCCTTTCATGC--CTTA---AT-GCATCCTTTCATGCAT
*
687903 TTTATTTATGGCATCCTTTCACGCCTTAATGCATCCTTTCATGC--
1 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
*
687947 CTTA---AT-GCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
1 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
687989 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
1 TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
688035 TTTATTTAT
1 TTTATTTAT
688044 TTATTCGATT
Statistics
Matches: 359, Mismatches: 40, Indels: 36
0.83 0.09 0.08
Matches are distributed among these distances:
40 46 0.13
41 4 0.01
42 6 0.02
44 6 0.02
45 4 0.01
46 271 0.75
47 2 0.01
48 3 0.01
50 3 0.01
51 2 0.01
52 12 0.03
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (46 bp):
TTTATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
Found at i:687713 original size:66 final size:66
Alignment explanation
Indices: 687643--687900 Score: 213
Period size: 66 Copynumber: 3.8 Consensus size: 66
687633 TATGGTATTC
* **
687643 TTTCATGCCTTAATGCATCCTTTTGTGCATTTTATTTATGGCATCCTTTCATGCCTTAATTCATT
1 TTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATTCATT
687708 A
66 A
* * * ** * * * *
687709 TTTCAAGCATTTTATTTATGACATCCTTTCAT--AACTTA---AT-GCATCATTTCAAGCATTTT
1 TTTCATGC--CTTA---ATG-CATCATTTCATGCATTTTATTTATGGCATCCTTTCATGC-CTTA
*
687768 ATTTATGGCATA
59 ATTCAT----TA
*
687780 CTTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATGCAT
1 -TTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATTCAT
**
687845 CC
65 TA
*
687847 TTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCACCCTTTCATGC
1 TTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGC
687901 ATTTTATTTA
Statistics
Matches: 149, Mismatches: 25, Indels: 36
0.71 0.12 0.17
Matches are distributed among these distances:
66 82 0.55
67 12 0.08
68 7 0.05
70 7 0.05
71 13 0.09
72 28 0.19
ACGTcount: A:0.23, C:0.22, G:0.10, T:0.45
Consensus pattern (66 bp):
TTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATTCATT
A
Found at i:687804 original size:20 final size:20
Alignment explanation
Indices: 687775--688032 Score: 219
Period size: 20 Copynumber: 11.7 Consensus size: 20
687765 TTTATTTATG
*
687775 GCATACTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
687795 GCATCATTTCATGCATTTTATTTAT
1 GCATCCTTTCATGC--CTTA---AT
687820 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
687841 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
687861 GCATCATTTCATGCATTTTATTTAT
1 GCATCCTTTCATGC--CTTA---AT
* *
687886 GGCACCCTTTCATGCATTTTATTTAT
1 -GCATCCTTTCATGC--CTTA---AT
*
687912 GGCATCCTTTCACGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
687933 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
687953 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
*
687973 GCATCCTTTCATGCATTTTATTTAT
1 GCATCCTTTCATGC--CTTA---AT
687998 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
688019 GCATCCTTTCATGC
1 GCATCCTTTCATGC
688033 ATTTTATTTA
Statistics
Matches: 205, Mismatches: 15, Indels: 36
0.80 0.06 0.14
Matches are distributed among these distances:
20 112 0.55
21 6 0.03
22 9 0.04
24 9 0.04
25 6 0.03
26 63 0.31
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.43
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:687864 original size:112 final size:111
Alignment explanation
Indices: 687730--688043 Score: 440
Period size: 112 Copynumber: 2.8 Consensus size: 111
687720 TTATTTATGA
** * *
687730 CATCCTTTCATAACTTAATGCATCATTTCAAGCATTTTATTTATGGCATACTTTCATGCCTTAAT
1 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAAT
*
687795 GCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATG
66 GCATCCTTTCATGCATTTTATTTAT-GCATCCTTTCATGCCTTAATG
* *
687842 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCACCCTTTCATGCATTTTA
1 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGC--CTTA
* *
687907 TTTATGGCATCCTTTCACGC--CTTA---ATGCATCCTTTCATGCCTTAATG
64 ---AT-GCATCCTTTCATGCATTTTATTTATGCATCCTTTCATGCCTTAATG
*
687954 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAAT
1 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAAT
688019 GCATCCTTTCATGCATTTTATTTAT
66 GCATCCTTTCATGCATTTTATTTAT
688044 TTATTCGATT
Statistics
Matches: 177, Mismatches: 14, Indels: 23
0.83 0.07 0.11
Matches are distributed among these distances:
106 13 0.07
107 2 0.01
108 3 0.02
110 3 0.02
111 2 0.01
112 132 0.75
113 2 0.01
114 3 0.02
116 3 0.02
117 2 0.01
118 12 0.07
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (111 bp):
CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAAT
GCATCCTTTCATGCATTTTATTTATGCATCCTTTCATGCCTTAATG
Found at i:691348 original size:19 final size:19
Alignment explanation
Indices: 691326--691364 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
691316 TGACATCCTA
691326 GTGGCATGTATACATTCTT
1 GTGGCATGTATACATTCTT
691345 GTGGCATGTATACATTCTT
1 GTGGCATGTATACATTCTT
691364 G
1 G
691365 ACTTAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.41
Consensus pattern (19 bp):
GTGGCATGTATACATTCTT
Found at i:692145 original size:25 final size:25
Alignment explanation
Indices: 692076--692156 Score: 99
Period size: 25 Copynumber: 3.2 Consensus size: 25
692066 CCGTAGTGCT
*
692076 TACAGATAAGGTCGTTCCCACCATAA
1 TACACATAAGGTCGTTCCCACCAT-A
* ** *
692102 TACACATAAGATTATTCCCACTATA
1 TACACATAAGGTCGTTCCCACCATA
*
692127 TACACATAAGGTCGCTCCCACCATA
1 TACACATAAGGTCGTTCCCACCATA
692152 TACAC
1 TACAC
692157 TTAATGTCCT
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 26 0.58
26 19 0.42
ACGTcount: A:0.36, C:0.30, G:0.10, T:0.25
Consensus pattern (25 bp):
TACACATAAGGTCGTTCCCACCATA
Found at i:692664 original size:13 final size:13
Alignment explanation
Indices: 692646--692671 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
692636 TCATAACAAT
692646 ACATATGTTAGTA
1 ACATATGTTAGTA
692659 ACATATGTTAGTA
1 ACATATGTTAGTA
692672 TTGTACTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
ACATATGTTAGTA
Found at i:699097 original size:25 final size:25
Alignment explanation
Indices: 699059--699135 Score: 118
Period size: 25 Copynumber: 3.1 Consensus size: 25
699049 CCGTAGTGCG
* *
699059 TACATATAAAGTCGTGCCCACCATA
1 TACACATAAGGTCGTGCCCACCATA
699084 TACACATAAGGTCGTGCCCACCATA
1 TACACATAAGGTCGTGCCCACCATA
* *
699109 TACACATAAGGTCATTCCCACCATA
1 TACACATAAGGTCGTGCCCACCATA
699134 TA
1 TA
699136 TACTTAGTGT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.35, C:0.30, G:0.12, T:0.23
Consensus pattern (25 bp):
TACACATAAGGTCGTGCCCACCATA
Found at i:700411 original size:54 final size:54
Alignment explanation
Indices: 700317--700534 Score: 231
Period size: 54 Copynumber: 4.0 Consensus size: 54
700307 TTTGAATTCT
* * *** * *
700317 CGTATGGGCACTTTGTGTCCAAAACTAAGAAATTTGTACTAAATGTATCAATTTC
1 CGTATGGGCACTATGTGTGC-AAACTAAGAAATACATACTAAGTGTATTAATTTC
* * * *
700372 GGTATGTGCACTATGTGTGCAAACTAAGAAATTCATACTAAGTGTATGAATTTC
1 CGTATGGGCACTATGTGTGCAAACTAAGAAATACATACTAAGTGTATTAATTTC
* * * * * *
700426 TGCATGGGTACTAT-TTTCACAAACTAAGAAATACATACTAAGTGTATTGATTTC
1 CGTATGGGCACTATGTGT-GCAAACTAAGAAATACATACTAAGTGTATTAATTTC
* * *
700480 CGTATGGGTACTATTTGCGCAAACTAAGAAATACATACTAAGTGTATTAATTTC
1 CGTATGGGCACTATGTGTGCAAACTAAGAAATACATACTAAGTGTATTAATTTC
700534 C
1 C
700535 TTATAGGAAA
Statistics
Matches: 138, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.01
54 119 0.86
55 17 0.12
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (54 bp):
CGTATGGGCACTATGTGTGCAAACTAAGAAATACATACTAAGTGTATTAATTTC
Found at i:700472 original size:108 final size:108
Alignment explanation
Indices: 700338--700533 Score: 275
Period size: 108 Copynumber: 1.8 Consensus size: 108
700328 TTTGTGTCCA
*** * * *
700338 AAACTAAGAAATTTGTACTAAATGTATCAATTTCGGTATGTGCACTATGTGTGCAAACTAAGAAA
1 AAACTAAGAAATACATACTAAATGTATCAATTTCCGTATGGGCACTATGTGCGCAAACTAAGAAA
*
700403 TTCATACTAAGTGTATGAATTTCTGCATGGGTACTATTTTCAC
66 TACATACTAAGTGTATGAATTTCTGCATGGGTACTATTTTCAC
* ** * *
700446 AAACTAAGAAATACATACTAAGTGTATTGATTTCCGTATGGGTACTATTTGCGCAAACTAAGAAA
1 AAACTAAGAAATACATACTAAATGTATCAATTTCCGTATGGGCACTATGTGCGCAAACTAAGAAA
*
700511 TACATACTAAGTGTATTAATTTC
66 TACATACTAAGTGTATGAATTTC
700534 CTTATAGGAA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
108 75 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (108 bp):
AAACTAAGAAATACATACTAAATGTATCAATTTCCGTATGGGCACTATGTGCGCAAACTAAGAAA
TACATACTAAGTGTATGAATTTCTGCATGGGTACTATTTTCAC
Found at i:700828 original size:68 final size:68
Alignment explanation
Indices: 700749--701276 Score: 709
Period size: 68 Copynumber: 7.8 Consensus size: 68
700739 AAAAGATAAT
* *
700749 GGCCTAACTGTGCATTTGAAAAAAATGTATCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGAAAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
700814 TGA
66 TGA
* * * *
700817 GGCCTAACTGTGCATTT-AAGATAAAGGTGCCAATTATGCCAGTTAGATGAAAGGCAAAATGCCT
1 GGCCTAACTGTGCATTTGAA-AAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
*
700881 TTGG
65 TTGA
* * * * ** * *
700885 GGCCTAACTGTGTATTTGACATAAATGTGTCAATTATTTCAGTTAGATGAAAGGATAAGTACCTT
1 GGCCTAACTGTGCATTTGAAAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
700950 TGA
66 TGA
* * * * *
700953 GGCCTAACTATGCATTTGACAAAAAGGTGCCAATTATGCCAGTTAGATGAAAGGCTAACTGTCTT
1 GGCCTAACTGTGCATTTGAAAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
701018 TGA
66 TGA
* * * *
701021 GGCCTAACTGTGCATTTGATATAAAGGTATCAATTATGCCAGTTAGATGAAAGGCTAAGTTCCTT
1 GGCCTAACTGTGCATTTGAAAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
701086 TGA
66 TGA
* * * * *
701089 GACCTAACTGTGCATTTG-ACAGAAGGATGTCAATTATGCCAGTTAGATGAAAGGATAAGTTCCT
1 GGCCTAACTGTGCATTTGAAAAAAAGG-TGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
701153 TTGA
65 TTGA
* * * *
701157 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTTCCTA
1 GGCCTAACTGTGCATTTGAAAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
701222 TGA
66 TGA
*
701225 GGCCTAACTGTGCATTTTACAAAAAAGGTGTCAATTATGCCAGTTAGATGAA
1 GGCCTAACTGTGCATTTGA-AAAAAAGGTGTCAATTATGCCAGTTAGATGAA
701277 CGGTTAAAAA
Statistics
Matches: 401, Mismatches: 54, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
67 6 0.01
68 360 0.90
69 35 0.09
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (68 bp):
GGCCTAACTGTGCATTTGAAAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
TGA
Found at i:701361 original size:81 final size:81
Alignment explanation
Indices: 701248--701519 Score: 382
Period size: 81 Copynumber: 3.4 Consensus size: 81
701238 ATTTTACAAA
* *
701248 AAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAAAATGTTGAGTAAAAGATAAATGGCCTT
1 AAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGAATGTTGAGTAAAAGATAAATGGCCTA
*
701313 GTTTTGCATTTGGCAG
66 GTTGTGCATTTGGCAG
* **
701329 AAAGGTGTTAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTA
1 AAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGAATGTTGAGTAAAAGATAAATGGCCTA
**
701394 GTTGTGCATTTGATAG
66 GTTGTGCATTTGGCAG
** * * *
701410 AAATTTGTAAATTATGCCAATTAGATTAACGGTTAAAGAATGTTGAGTAAAAGATAAATGGCCTA
1 AAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGAATGTTGAGTAAAAGATAAATGGCCTA
* *
701475 ATTGTACATTTGGCAG
66 GTTGTGCATTTGGCAG
* * *
701491 AAAAGTGTCAATCATGCAAGTTAGATGAA
1 AAAGGTGTCAATTATGCCAGTTAGATGAA
701520 AAGTAAATTC
Statistics
Matches: 165, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 165 1.00
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (81 bp):
AAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGAATGTTGAGTAAAAGATAAATGGCCTA
GTTGTGCATTTGGCAG
Found at i:706075 original size:55 final size:54
Alignment explanation
Indices: 706002--706200 Score: 254
Period size: 54 Copynumber: 3.6 Consensus size: 54
705992 AAGCATGCAA
* * *
706002 AAACTTAAGAAATCCATACTAAGTGTATGAATTTCCATATGGGCACTTTGTGTGC
1 AAAC-TAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACTATGTGTGC
* * * * *
706057 AAAACTAAGAAATTCATACTAGGTGTTTGATTTTCGGTATGGGCACTATGTTTGC
1 -AAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACTATGTGTGC
* * * *
706112 AAACTAAAAAATTCATACTAATTGTATGAATTTTCGTATGGGCACTATATGTGC
1 AAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACTATGTGTGC
* *
706166 AAACTAAGAAATACATACTAAGTGTATTAATTTCC
1 AAACTAAGAAATTCATACTAAGTGTATGAATTTCC
706201 TTAATTGAAA
Statistics
Matches: 121, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
54 75 0.62
55 42 0.35
56 4 0.03
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (54 bp):
AAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACTATGTGTGC
Found at i:706789 original size:203 final size:204
Alignment explanation
Indices: 706423--706872 Score: 688
Period size: 203 Copynumber: 2.2 Consensus size: 204
706413 ATGGCCTAAT
* * *
706423 TATGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
1 TATGCATTTGAAATAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTAAGGCCT
*
706488 AACTGTGCATTTGACTAAAAAGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATTCCTTTGAGG
66 AACTGTGCATTTGACTAAAAAGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATGCCTTTGAGG
* * * *
706553 CCTAATTGTGCATTTGACAGAAAAGTGTCAATTATGCTAGTTAGATGAAAGGCTTAGTGCCTTTG
131 CCTAACTGTGCATTTGACAGAAAAGTGTCAATTATACCAGTTAGATGAAAGGCTAAGTGCCTTTG
**
706618 AGGCTTAAC
196 AGGAATAAC
* * *
706627 TATGTATTT-AAATAAGGGTGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCTTTAAGGCCT
1 TATGCATTTGAAATAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTAAGGCCT
* * *
706691 AATTGTGCATTTGAC-AGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAG
66 AACTGTGCATTTGACTA-AAAAGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATGCCTTTGAG
* *
706755 GCCTAACTGTGCATTTGATAGAAATGTGTCAATTATACCAGTTAGATGAAAGGCTAAGTGCCTTT
130 GCCTAACTGTGCATTTGACAGAAAAGTGTCAATTATACCAGTTAGATGAAAGGCTAAGTGCCTTT
706820 GAGGAATAAC
195 GAGGAATAAC
* * *
706830 TGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAAATGAA
1 TATGCATTTGAAATAAAGGTGTCAATTATGCCAGTTAGATGAA
706873 CGGTTAAAGC
Statistics
Matches: 220, Mismatches: 24, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
202 1 0.00
203 182 0.83
204 37 0.17
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (204 bp):
TATGCATTTGAAATAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTAAGGCCT
AACTGTGCATTTGACTAAAAAGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATGCCTTTGAGG
CCTAACTGTGCATTTGACAGAAAAGTGTCAATTATACCAGTTAGATGAAAGGCTAAGTGCCTTTG
AGGAATAAC
Found at i:706890 original size:68 final size:68
Alignment explanation
Indices: 706415--706872 Score: 659
Period size: 68 Copynumber: 6.8 Consensus size: 68
706405 AAAAGCTAAT
* *
706415 GGCCTAATTATGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
706480 TGA
66 TGA
* * *
706483 GGCCTAACTGTGCATTTGACTA-AAAAGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATTCCT
1 GGCCTAACTGTGCATTTGAC-AGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
706547 TTGA
65 TTGA
* * * *
706551 GGCCTAATTGTGCATTTGACAGAAAAGTGTCAATTATGCTAGTTAGATGAAAGGCTTAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
706616 TGA
66 TGA
* * * * * * *
706619 GGCTTAACTATGTATTT-AAATAAGGGTGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
*
706683 TAA
66 TGA
* *
706686 GGCCTAATTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
706751 TGA
66 TGA
* * *
706754 GGCCTAACTGTGCATTTGATAGAAATGTGTCAATTATACCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
706819 TGA
66 TGA
** * *
706822 GGAATAACTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAAATGAA
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
706873 CGGTTAAAGC
Statistics
Matches: 345, Mismatches: 42, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
67 56 0.16
68 288 0.83
69 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (68 bp):
GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
TGA
Found at i:706971 original size:81 final size:80
Alignment explanation
Indices: 706829--707113 Score: 335
Period size: 81 Copynumber: 3.5 Consensus size: 80
706819 TGAGGAATAA
* * *
706829 CTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAAATGAACGGTTAAAG-CATGTTGAGTA
1 CTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACA--TTGAGTA
*
706893 AAAGATAAATGGCCTTG
64 AAAGATAAATGGCCTAG
* * *
706910 CTGTGCATTTGGCAGAAAGGTTTCAATTATGCCAGTTAGATAAATGGTTAAAGACCATTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGA-CATTGAGTAA
706975 AAGATAAATGGCCTAG
65 AAGATAAATGGCCTAG
* * * *
706991 CTGTGCATTTGGCTGAAATGTGT-AATTTATGCCAGTTCGATGAACGGATAAAGA-ATGTTGAGT
1 CTGTGCATTTGGCAGAAAGGTGTCAA-TTATGCCAGTTAGATGAACGGTTAAAGACA--TTGAGT
*
707054 AAAAGATAAATGGCCTAA
63 AAAAGATAAATGGCCTAG
* * * *
707072 TTGCGCATTTGGCAGAAAAGTGTCAATCATG-CATGTTAGATG
1 CTGTGCATTTGGCAGAAAGGTGTCAATTATGCCA-GTTAGATG
707114 GAATGTAAAT
Statistics
Matches: 176, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
79 1 0.01
80 4 0.02
81 167 0.95
82 2 0.01
83 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (80 bp):
CTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACATTGAGTAAA
AGATAAATGGCCTAG
Found at i:707258 original size:30 final size:31
Alignment explanation
Indices: 707199--707259 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
707189 CAACCATTCA
* *
707199 CAACCTTTCCAAAATTATCAAATTAGTCCCC
1 CAACCTTTCAAAAATTATCAAAATAGTCCCC
* *
707230 CAACTTTTCAAAAATTAT-AAAATGGTCCCC
1 CAACCTTTCAAAAATTATCAAAATAGTCCCC
707260 AAATTTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.38, C:0.28, G:0.05, T:0.30
Consensus pattern (31 bp):
CAACCTTTCAAAAATTATCAAAATAGTCCCC
Found at i:707873 original size:11 final size:11
Alignment explanation
Indices: 707857--707881 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
707847 GAATTTAGAA
707857 TAATTTACCTT
1 TAATTTACCTT
707868 TAATTTACCTT
1 TAATTTACCTT
707879 TAA
1 TAA
707882 GGAATATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (11 bp):
TAATTTACCTT
Found at i:707987 original size:31 final size:31
Alignment explanation
Indices: 707949--708011 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
707939 AATGACCATT
707949 AAACCAAGACACCTCAACCTTATCATCTTCC
1 AAACCAAGACACCTCAACCTTATCATCTTCC
707980 AAACCAAGACACCTCAACCTTATCATCTTCC
1 AAACCAAGACACCTCAACCTTATCATCTTCC
708011 A
1 A
708012 TAAGTCAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.38, G:0.03, T:0.22
Consensus pattern (31 bp):
AAACCAAGACACCTCAACCTTATCATCTTCC
Found at i:708295 original size:24 final size:24
Alignment explanation
Indices: 708268--708327 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
708258 GATAGTTCTT
708268 AAACTATTTAAAATATAATACTAA
1 AAACTATTTAAAATATAATACTAA
* * *
708292 AAACAATTATAAAATATAATTCTTA
1 AAACTATT-TAAAATATAATACTAA
708317 AAA-TATTTAAA
1 AAACTATTTAAA
708328 CTAAAATCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
23 4 0.13
24 10 0.32
25 17 0.55
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (24 bp):
AAACTATTTAAAATATAATACTAA
Found at i:708319 original size:25 final size:24
Alignment explanation
Indices: 708263--708344 Score: 71
Period size: 25 Copynumber: 3.5 Consensus size: 24
708253 CTAATGATAG
*
708263 TTCTT-AAACTATTTAAAATATAA
1 TTCTTAAAACAATTTAAAATATAA
* *
708286 TACTAAAAACAATTATAAAATATAA
1 TTCTTAAAACAATT-TAAAATATAA
* *
708311 TTCTTAAAA-TATTTAAACTA-AA
1 TTCTTAAAACAATTTAAAATATAA
*
708333 ATCTTAAGAACA
1 TTCTTAA-AACA
708345 TCAGTTTGGC
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
22 8 0.17
23 11 0.24
24 10 0.22
25 17 0.37
ACGTcount: A:0.54, C:0.10, G:0.01, T:0.35
Consensus pattern (24 bp):
TTCTTAAAACAATTTAAAATATAA
Found at i:714113 original size:24 final size:21
Alignment explanation
Indices: 714009--714118 Score: 90
Period size: 18 Copynumber: 5.3 Consensus size: 21
713999 TACACTATGC
*
714009 ATATAGTTTTGGAATATATA-T
1 ATATA-TTTTGAAATATATATT
714030 ATATA-TTT--AATATATATT
1 ATATATTTTGAAATATATATT
*
714048 ATATATTTTTGAAA-ACATA-T
1 ATATA-TTTTGAAATATATATT
*
714068 ATA-GTTTTGAAATATATATT
1 ATATATTTTGAAATATATATT
*
714088 ATATATTTTAGAAAATATTTATTT
1 ATATATTTT-G-AAATATATA-TT
714112 ATATATT
1 ATATATT
714119 ATTATGTTAT
Statistics
Matches: 73, Mismatches: 5, Indels: 19
0.75 0.05 0.20
Matches are distributed among these distances:
17 8 0.11
18 14 0.19
19 7 0.10
20 11 0.15
21 13 0.18
22 3 0.04
23 8 0.11
24 9 0.12
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (21 bp):
ATATATTTTGAAATATATATT
Found at i:732258 original size:2 final size:2
Alignment explanation
Indices: 732178--732242 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
732168 ACACACACAC
732178 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
732220 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
732243 ATCATTAAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:732411 original size:2 final size:2
Alignment explanation
Indices: 732400--732428 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
732390 TATCATTAAT
732400 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
732429 ATGATATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:732435 original size:10 final size:9
Alignment explanation
Indices: 732400--732436 Score: 51
Period size: 8 Copynumber: 4.2 Consensus size: 9
732390 TATCATTAAT
732400 TATAATATA
1 TATAATATA
732409 TAT-ATATA
1 TATAATATA
732417 TAT-ATATA
1 TATAATATA
732425 TATAATGATA
1 TATAAT-ATA
732435 TA
1 TA
732437 GAATGTTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 16 0.62
9 5 0.19
10 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (9 bp):
TATAATATA
Found at i:733116 original size:42 final size:42
Alignment explanation
Indices: 733060--733140 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
733050 AATATTTTTT
* * *
733060 GGAAAATGTTTTCTAGTGTTTGAT-ATCTGTAGTTGGTTTTAC
1 GGAAAATATTTTCTAATGTTTGATGAT-TGTAATTGGTTTTAC
733102 GGAAAATATTTTCTAATGTTTGATGATTGTAATTGGTTT
1 GGAAAATATTTTCTAATGTTTGATGATTGTAATTGGTTT
733141 AAACCAATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.22, T:0.48
Consensus pattern (42 bp):
GGAAAATATTTTCTAATGTTTGATGATTGTAATTGGTTTTAC
Found at i:733292 original size:27 final size:27
Alignment explanation
Indices: 733258--733322 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
733248 AATCAAAATA
733258 ATATTATTTTATTTACTTCATATTAAT
1 ATATTATTTTATTTACTTCATATTAAT
*
733285 ATATTATTTTATTTATTTCATATTAAT
1 ATATTATTTTATTTACTTCATATTAAT
733312 ATATTATTTTA
1 ATATTATTTTA
733323 ATATCATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.62
Consensus pattern (27 bp):
ATATTATTTTATTTACTTCATATTAAT
Found at i:736316 original size:20 final size:20
Alignment explanation
Indices: 736291--736341 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
736281 TAATTCAATC
736291 AGTATCGATACTGACGAGGT
1 AGTATCGATACTGACGAGGT
736311 AGTATCGATACTGACGAGGT
1 AGTATCGATACTGACGAGGT
736331 AGTATCGATAC
1 AGTATCGATAC
736342 CATGGTAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (20 bp):
AGTATCGATACTGACGAGGT
Found at i:737319 original size:54 final size:54
Alignment explanation
Indices: 736766--737311 Score: 876
Period size: 54 Copynumber: 10.1 Consensus size: 54
736756 TTACCAAATA
*
736766 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
736820 GGCACTAAGTGTGCATTTCATGGAATTTATCCTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
*
736874 GGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * *
736928 GACACTAAGTGTGCATTTCACGGAATTCACCCTTTGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * *
736982 GACACTAAGTGTGCATTTCACGTAATTCAGCCTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * *
737036 AGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCATTTT
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * *
737090 GGCACTAGGTGTGCATTTCACGGAATTCATTCTATGTGGATGAATAACGGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
737144 GGCACTAAGTATGCTTTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
737198 GGCACTAAGTGTGCATTTCGCGGAATTCATCCTATGTGGATGAATAACCGTTTA
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * *
737252 GGCACTAAGTGTGCATTACACAGAATTCATCCTATGTGGATGAATAACTGTTTG
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
737306 GGCACT
1 GGCACT
737312 TTGTGTGCTA
Statistics
Matches: 453, Mismatches: 39, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 453 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (54 bp):
GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
Found at i:737378 original size:57 final size:58
Alignment explanation
Indices: 737315--737470 Score: 172
Period size: 57 Copynumber: 2.7 Consensus size: 58
737305 GGGCACTTTG
* * *
737315 TGTGCTAAAATGTTAAGAAATTCATACTAAGTGTATGTATTTCCGTATTGGGTA-CAA
1 TGTGCTAAAATGTTAAGAAATTCATACTAAGTGTATGAATTTCCGTATTGAGCATCAA
* * * * * **
737372 TGTGCTATAATGTTAAGAAATTTATACTGAGTGTACGAATTTTCGTATTGAGCATTTA
1 TGTGCTAAAATGTTAAGAAATTCATACTAAGTGTATGAATTTCCGTATTGAGCATCAA
* * * *
737430 TGTTC-AAAAAGATAAGAAACTCATACTAAGTGTATGAATTT
1 TGTGCTAAAATGTTAAGAAATTCATACTAAGTGTATGAATTT
737471 TCACATGGAA
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
57 75 0.94
58 5 0.06
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (58 bp):
TGTGCTAAAATGTTAAGAAATTCATACTAAGTGTATGAATTTCCGTATTGAGCATCAA
Found at i:741408 original size:76 final size:76
Alignment explanation
Indices: 741317--741485 Score: 252
Period size: 76 Copynumber: 2.2 Consensus size: 76
741307 TTAAACTCAA
*
741317 ATTTAGGATAATATTTTAAACATTATAT-TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGT
1 ATTTAGGATATTATTTTAAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGT
741381 ATTTTAATTAAG
65 ATTTTAATTAAG
* * * *
741393 TTTTAGGATATTATTTT-TATATTTTATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTA
1 ATTTAGGATATTATTTTAAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTA
*
741457 TTTTAATTAGG
66 TTTTAATTAAG
*
741468 ATTTAGAATATTATTTTA
1 ATTTAGGATATTATTTTA
741486 TTTTTTTAGG
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
75 40 0.48
76 43 0.52
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (76 bp):
ATTTAGGATATTATTTTAAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTA
TTTTAATTAAG
Found at i:741493 original size:75 final size:76
Alignment explanation
Indices: 741345--741484 Score: 246
Period size: 75 Copynumber: 1.9 Consensus size: 76
741335 AACATTATAT
* *
741345 TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGTTTTAGGATATTATTTT
1 TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTATTTT
741410 TATATTTTATC
66 TATATTTTATC
*
741421 TTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGTATTTTAATTAGGATTTAGAATATTATTTT
1 TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTATTTT
741485 ATTTTTTTAG
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
75 33 0.54
76 28 0.46
ACGTcount: A:0.27, C:0.02, G:0.11, T:0.59
Consensus pattern (76 bp):
TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTATTTT
TATATTTTATC
Found at i:742154 original size:22 final size:23
Alignment explanation
Indices: 742129--742177 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
742119 CTTTAATTTG
*
742129 TTTATTTAATT-ATATTTTTTCT
1 TTTATTTAATTCATATTTTTTAT
*
742151 TTTATTTAATTCTTATTTTTTAT
1 TTTATTTAATTCATATTTTTTAT
742174 TTTA
1 TTTA
742178 ACCACAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTATTTAATTCATATTTTTTAT
Found at i:747879 original size:16 final size:16
Alignment explanation
Indices: 747855--747897 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 16
747845 ACCCATTTCG
747855 TTATATTTTTATTTTTGT
1 TTAT-TTTTTATTTTT-T
747873 TT-TTTTTTATTTTTT
1 TTATTTTTTATTTTTT
747888 TTATTTTTTA
1 TTATTTTTTA
747898 GCGAACTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 3 0.12
16 18 0.75
17 1 0.04
18 2 0.08
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (16 bp):
TTATTTTTTATTTTTT
Found at i:747885 original size:9 final size:9
Alignment explanation
Indices: 747860--747896 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
747850 TTTCGTTATA
747860 TTTTTA-TT
1 TTTTTATTT
*
747868 TTTGT-TTT
1 TTTTTATTT
747876 TTTTTATTT
1 TTTTTATTT
747885 TTTTTATTT
1 TTTTTATTT
747894 TTT
1 TTT
747897 AGCGAACTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
8 10 0.40
9 15 0.60
ACGTcount: A:0.08, C:0.00, G:0.03, T:0.89
Consensus pattern (9 bp):
TTTTTATTT
Found at i:747933 original size:20 final size:19
Alignment explanation
Indices: 747904--747945 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
747894 TTTAGCGAAC
747904 TTTATTTCATT-ATATTTAT
1 TTTATTTCATTAAT-TTTAT
747923 TTTATTTTCATTAATTTTAT
1 TTTA-TTTCATTAATTTTAT
747943 TTT
1 TTT
747946 TTCTGAACAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTATTTCATTAATTTTAT
Found at i:748937 original size:20 final size:21
Alignment explanation
Indices: 748892--748938 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
748882 TTGTATCATT
748892 GTTGTTCCAAAAAAAAATTCAA
1 GTTGTTCCAAAAAAAAA-TCAA
*
748914 --TGTTTCAAAAAAAAA-CAA
1 GTTGTTCCAAAAAAAAATCAA
748932 GTTGTTC
1 GTTGTTC
748939 ACTGTATCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 6
0.72 0.07 0.21
Matches are distributed among these distances:
18 3 0.14
20 18 0.86
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.30
Consensus pattern (21 bp):
GTTGTTCCAAAAAAAAATCAA
Found at i:749826 original size:76 final size:75
Alignment explanation
Indices: 749735--749899 Score: 233
Period size: 76 Copynumber: 2.2 Consensus size: 75
749725 TTAAACTCAA
* *
749735 ATTTAGGATAATATTTTAAACATTATAT-TTTATCTTTTTATTTTAGTTTAAATAGGTTTTTAGT
1 ATTTAGGATATTATTTT-AACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGT
749799 ATTTTAATTAAG
64 ATTTTAATTAAG
* * * *
749811 TTTTAGGATATTATTTTTATATTTTATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
1 ATTTAGGATATTATTTTAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
*
749876 TTTAATTAGG
66 TTTAATTAAG
*
749886 ATTTAGAATATTAT
1 ATTTAGGATATTAT
749900 ATTATTATTT
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
75 37 0.47
76 42 0.53
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.57
Consensus pattern (75 bp):
ATTTAGGATATTATTTTAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
TTTAATTAAG
Found at i:749909 original size:75 final size:76
Alignment explanation
Indices: 749763--749910 Score: 228
Period size: 75 Copynumber: 2.0 Consensus size: 76
749753 AACATTATAT
* * * *
749763 TTTATCTTTTTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGTTTTAGGATATTATTTT
1 TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTATTTA
749828 TATATTTTATC
66 TATATTTTATC
*
749839 TTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGTATTTTAATTAGGATTTAGAATATTATATT
1 TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTAT-TT
749903 AT-TATTTT
65 ATATATTTT
749911 TAGGTATTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
75 36 0.55
76 30 0.45
ACGTcount: A:0.28, C:0.02, G:0.10, T:0.60
Consensus pattern (76 bp):
TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTATTTA
TATATTTTATC
Found at i:750574 original size:22 final size:23
Alignment explanation
Indices: 750549--750597 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
750539 CTTTAATTTG
*
750549 TTTATTTAATT-ATATTTTTTCT
1 TTTATTTAATTCATATTTTTTAT
*
750571 TTTATTTAATTCTTATTTTTTAT
1 TTTATTTAATTCATATTTTTTAT
750594 TTTA
1 TTTA
750598 ACCACAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTATTTAATTCATATTTTTTAT
Found at i:750932 original size:15 final size:15
Alignment explanation
Indices: 750912--750940 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
750902 ATTCAGGAAG
750912 ACATTCAAAGGGTAC
1 ACATTCAAAGGGTAC
750927 ACATTCAAAGGGTA
1 ACATTCAAAGGGTA
750941 TCGATACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (15 bp):
ACATTCAAAGGGTAC
Found at i:751624 original size:14 final size:16
Alignment explanation
Indices: 751605--751637 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
751595 ATGAACAGTG
751605 ATATGT-AAATG-TAA
1 ATATGTGAAATGATAA
751619 ATATGTGAAATGATAA
1 ATATGTGAAATGATAA
751635 ATA
1 ATA
751638 ATAATGCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 5 0.29
16 6 0.35
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (16 bp):
ATATGTGAAATGATAA
Found at i:751729 original size:18 final size:18
Alignment explanation
Indices: 751706--751740 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
751696 AGGGTTCTAC
751706 GTGGTCCTTCAGGACATA
1 GTGGTCCTTCAGGACATA
*
751724 GTGGTCCTTCTGGACAT
1 GTGGTCCTTCAGGACAT
751741 TTCATAATGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.23, G:0.29, T:0.31
Consensus pattern (18 bp):
GTGGTCCTTCAGGACATA
Found at i:751907 original size:2 final size:2
Alignment explanation
Indices: 751900--751938 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
751890 AATGTATGTA
751900 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
751939 GTGATATGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:754351 original size:54 final size:54
Alignment explanation
Indices: 754263--754866 Score: 893
Period size: 54 Copynumber: 11.2 Consensus size: 54
754253 CAAATAGGCG
** * *
754263 CTAAGTGTGCATTTCACATAATTCATCCTATGTGGATAAATAACCGTTTCGGGA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
* * * * **
754317 CTATGTGTGCATTTCATGAAATTCATCCTTTGTGGATGAATAATTGTTTCGGCA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
* **
754371 CTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAGTCGTTTCGGCA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
** *
754425 CTAAGTGTGCATTTCACGTTATTCATCCTATGTGGATGAATAACCGTTTCGTCA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
*
754479 CTAATTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
* * * *
754533 CTAAGTGTGCATTTGACGGAATTCATCCTATATGGATGAATAATCGTTTCAGCA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
* * *
754587 TTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTTGGCA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
* * *
754641 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGATACAGCA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
*
754695 CTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
* *
754749 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGTATAACCGTTTCGACA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
* * * *
754803 CTAAGTGTGCATTTCACGGAATTAATCCTCTGTGGATGAATAACTGTTTGGGCA
1 CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
*
754857 CTATGTGTGC
1 CTAAGTGTGC
754867 TAAAATGTTA
Statistics
Matches: 494, Mismatches: 56, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 494 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (54 bp):
CTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCA
Found at i:754920 original size:59 final size:59
Alignment explanation
Indices: 754850--754998 Score: 219
Period size: 59 Copynumber: 2.5 Consensus size: 59
754840 GAATAACTGT
754850 TTGGGCACTATGTGTGCTAAAATGTTAAGAAATCCATACTAAGTATATGAATTTCCGTA
1 TTGGGCACTATGTGTGCTAAAATGTTAAGAAATCCATACTAAGTATATGAATTTCCGTA
* * * *
754909 TTTGGCACTATGTGTGCTACAATGTTAAGAAATTCATACTAAGTGTATGAATTTCCGTA
1 TTGGGCACTATGTGTGCTAAAATGTTAAGAAATCCATACTAAGTATATGAATTTCCGTA
* * * *
754968 TTGGGCACTTTATGTGC-AAAAAGATAAGAAA
1 TTGGGCACTATGTGTGCTAAAATGTTAAGAAA
754999 CTCATATTAA
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
58 11 0.14
59 69 0.86
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (59 bp):
TTGGGCACTATGTGTGCTAAAATGTTAAGAAATCCATACTAAGTATATGAATTTCCGTA
Found at i:758469 original size:16 final size:16
Alignment explanation
Indices: 758448--758509 Score: 55
Period size: 13 Copynumber: 4.2 Consensus size: 16
758438 ATTTAACAAG
758448 ATATTATAAATTATTA
1 ATATTATAAATTATTA
758464 ATATTAT---TTATTA
1 ATATTATAAATTATTA
* *
758477 TTTTTATAAA--A-TA
1 ATATTATAAATTATTA
758490 ATATTATTAAATTATTA
1 ATATTA-TAAATTATTA
758507 ATA
1 ATA
758510 ATAAGCAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 13
0.67 0.08 0.25
Matches are distributed among these distances:
13 17 0.49
14 5 0.14
16 8 0.23
17 5 0.14
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATTATAAATTATTA
Found at i:758884 original size:13 final size:14
Alignment explanation
Indices: 758866--758896 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
758856 CAAAATAATT
758866 AAAATTA-TTTTCA
1 AAAATTATTTTTCA
758879 AAAATTATTTTTCA
1 AAAATTATTTTTCA
758893 AAAA
1 AAAA
758897 ATATAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
AAAATTATTTTTCA
Found at i:759192 original size:50 final size:50
Alignment explanation
Indices: 759067--759194 Score: 139
Period size: 50 Copynumber: 2.6 Consensus size: 50
759057 GTAGCAGTAA
* * * * *
759067 AGCGCACCCTCTGAACCGCGTTATACGCTGATTTGGCGCCATGTGGGTAT
1 AGCGCACCCCCTGAACCGCGATATACGCTGATCTAGCGCCACGTGGGTAT
** * * *
759117 AGCGCACCCCCTGCCCCGTGATATACGGTGATCTAGCGCCGCGTGGGTAT
1 AGCGCACCCCCTGAACCGCGATATACGCTGATCTAGCGCCACGTGGGTAT
* * *
759167 AGCGCGCCCCCTGATCCGCGCTATACGC
1 AGCGCACCCCCTGAACCGCGATATACGC
759195 CACATAGGGG
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.16, C:0.34, G:0.28, T:0.21
Consensus pattern (50 bp):
AGCGCACCCCCTGAACCGCGATATACGCTGATCTAGCGCCACGTGGGTAT
Found at i:762527 original size:14 final size:15
Alignment explanation
Indices: 762460--762528 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 15
762450 AGTAAGTATT
* *
762460 AAAATAGAAATAATAA
1 AAAATATAAGTAA-AA
* *
762476 AAAATTATAATTAAAC
1 AAAA-TATAAGTAAAA
762492 AAAATA-AAGTAAATA
1 AAAATATAAGTAAA-A
*
762507 CAAATATAA-TAAAA
1 AAAATATAAGTAAAA
762521 AAAATATA
1 AAAATATA
762529 TCGATGCCTG
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
14 14 0.33
15 11 0.26
16 11 0.26
17 7 0.16
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (15 bp):
AAAATATAAGTAAAA
Found at i:764738 original size:104 final size:109
Alignment explanation
Indices: 764541--764866 Score: 430
Period size: 104 Copynumber: 3.0 Consensus size: 109
764531 ATTACAAATA
* * * * *
764541 TTAATTCTTACTCTAATAATCATGTATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAAAAATCATGCATTAAATAAATCAACTAA-TATTAAT-ATAATCTAAATTA
* **
764606 AATTAAAACGTTAAAATGTTACTATATCAGCAAAGTGTCGAGATAT
64 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTCGAGATAT
*
764652 TTAATTCTTAATCTTAAAAATCATGCATTAAATAAATCAACT-A-ATT-AT-T-A-CTAATTTAA
1 TTAATTCTTAATC-TAAAAATCATGCATTAAATAAATCAACTAATATTAATATAATCTAAATTAA
*
764711 ATTAAAACGTTAAAATATTACCGTATCAACAAAGTGTCGAGATAT
65 ATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTCGAGATAT
* *
764756 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTAATAATAATTTAAATTA
1 TTAATTCTTAATCTAAAAATCATGCATTAAATAAATCAACT-AATATTAAT-ATAATCTAAATTA
* * *
764821 AATTAAAACGTTAAAATTTTGCCGTATCAGCAAAGTGTAGAGATAT
64 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTCGAGATAT
764867 ATGATTTCCA
Statistics
Matches: 189, Mismatches: 17, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
103 27 0.14
104 61 0.32
105 2 0.01
106 4 0.02
107 2 0.01
108 1 0.01
109 4 0.02
110 1 0.01
111 61 0.32
112 26 0.14
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.37
Consensus pattern (109 bp):
TTAATTCTTAATCTAAAAATCATGCATTAAATAAATCAACTAATATTAATATAATCTAAATTAAA
TTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTCGAGATAT
Found at i:764981 original size:14 final size:13
Alignment explanation
Indices: 764941--764983 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
764931 AAAATATTAA
* *
764941 ATAAAGTAAATAC
1 ATAAAGTAAAAAT
764954 ATAAGAGTAAAAAT
1 ATAA-AGTAAAAAT
764968 ATAATAGTAAAAAT
1 ATAA-AGTAAAAAT
764982 AT
1 AT
764984 TATAAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 4 0.15
14 22 0.85
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (13 bp):
ATAAAGTAAAAAT
Found at i:766450 original size:16 final size:16
Alignment explanation
Indices: 766429--766463 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
766419 CATCATTTCC
766429 GTTGAGGATGTTTTTG
1 GTTGAGGATGTTTTTG
766445 GTTGAGGATGTTTTTG
1 GTTGAGGATGTTTTTG
766461 GTT
1 GTT
766464 CACGGAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.37, T:0.51
Consensus pattern (16 bp):
GTTGAGGATGTTTTTG
Found at i:766733 original size:37 final size:36
Alignment explanation
Indices: 766661--766734 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 36
766651 GTTGAAAAAT
*
766661 ATTTATATATTTTCTTTAAAAAATTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAATTAAAATCATAAA
* *
766697 ATTTATATAATTTTTTTTACAAAATTAAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAAAAATT-AAAATCATAAA
766734 A
1 A
766735 AAATTTAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 8 0.24
37 21 0.64
38 4 0.12
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (36 bp):
ATTTATATATTTTCTTTAAAAAATTAAAATCATAAA
Found at i:771622 original size:31 final size:32
Alignment explanation
Indices: 771582--771662 Score: 128
Period size: 32 Copynumber: 2.6 Consensus size: 32
771572 ATTAGAGGAA
771582 TACTCGGCGTCTTCTTCACA-ATGGAGTGGAG
1 TACTCGGCGTCTTCTTCACATATGGAGTGGAG
* * *
771613 TACTTGGCGTCTTCTTCACATTTGGGGTGGAG
1 TACTCGGCGTCTTCTTCACATATGGAGTGGAG
771645 TACTCGGCGTCTTCTTCA
1 TACTCGGCGTCTTCTTCA
771663 TGGAAGGGGG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
31 19 0.42
32 26 0.58
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (32 bp):
TACTCGGCGTCTTCTTCACATATGGAGTGGAG
Found at i:774517 original size:28 final size:28
Alignment explanation
Indices: 774485--774785 Score: 326
Period size: 28 Copynumber: 10.8 Consensus size: 28
774475 TTTACTATTA
* *
774485 TTAAATTATTAAAGTTAAATCATTAAAG
1 TTAAATCATTAAAGTTAAATAATTAAAG
*
774513 TTAAATCATTAAAGTTAAATAATTATTA-
1 TTAAATCATTAAAGTTAAATAATTA-AAG
* *
774541 TTAAATCATTAAAGTTAAATTATTAAAA
1 TTAAATCATTAAAGTTAAATAATTAAAG
*
774569 TTAAATCATTAAAGTTAAATAATTATTA-
1 TTAAATCATTAAAGTTAAATAATTA-AAG
* *
774597 TTAAATTATTAAAGTTAAATCATTAAAG
1 TTAAATCATTAAAGTTAAATAATTAAAG
* * *
774625 TTAAATAATTATTA-TTAAATTATTAAAG
1 TTAAATCATTA-AAGTTAAATAATTAAAG
* * *
774653 TTAAATTATTAAAATTAAATCATTAAAG
1 TTAAATCATTAAAGTTAAATAATTAAAG
* * *
774681 TTAAATAATTATTA-TTAAATTATTAAAG
1 TTAAATCATTA-AAGTTAAATAATTAAAG
*
774709 TTAAATCATTAAAGTTAAATAATTATTA-
1 TTAAATCATTAAAGTTAAATAATTA-AAG
* *
774737 TTAAACCATTAAAGTTAAATAATTATTA-
1 TTAAATCATTAAAGTTAAATAATTA-AAG
774765 TTAAATCATTAAAGTTAAATA
1 TTAAATCATTAAAGTTAAATA
774786 TGTACTTGAG
Statistics
Matches: 239, Mismatches: 25, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
27 4 0.02
28 230 0.96
29 5 0.02
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (28 bp):
TTAAATCATTAAAGTTAAATAATTAAAG
Found at i:774545 original size:42 final size:42
Alignment explanation
Indices: 774485--774784 Score: 324
Period size: 42 Copynumber: 7.1 Consensus size: 42
774475 TTTACTATTA
* *
774485 TTAAATTATTAAAGTTAAATCATTAAAGTTAAATCATTAAAG
1 TTAAATCATTAAAGTTAAATCATTAAAGTTAAATTATTAAAG
* * *
774527 TTAAATAATTATTA-TTAAATCATTAAAGTTAAATTATTAAAA
1 TTAAATCATTA-AAGTTAAATCATTAAAGTTAAATTATTAAAG
* *
774569 TTAAATCATTAAAGTTAAATAATTATTA-TTAAATTATTAAAG
1 TTAAATCATTAAAGTTAAATCATTA-AAGTTAAATTATTAAAG
* *
774611 TTAAATCATTAAAGTTAAATAATTATTA-TTAAATTATTAAAG
1 TTAAATCATTAAAGTTAAATCATTA-AAGTTAAATTATTAAAG
* * * *
774653 TTAAATTATTAAAATTAAATCATTAAAGTTAAATAATTATTA-
1 TTAAATCATTAAAGTTAAATCATTAAAGTTAAATTATTA-AAG
* * *
774695 TTAAATTATTAAAGTTAAATCATTAAAGTTAAATAATTATTA-
1 TTAAATCATTAAAGTTAAATCATTAAAGTTAAATTATTA-AAG
* * * *
774737 TTAAACCATTAAAGTTAAATAATTATTA-TTAAATCATTAAAG
1 TTAAATCATTAAAGTTAAATCATTA-AAGTTAAATTATTAAAG
774779 TTAAAT
1 TTAAAT
774785 ATGTACTTGA
Statistics
Matches: 228, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
41 3 0.01
42 221 0.97
43 4 0.02
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (42 bp):
TTAAATCATTAAAGTTAAATCATTAAAGTTAAATTATTAAAG
Found at i:774650 original size:98 final size:98
Alignment explanation
Indices: 774499--774785 Score: 520
Period size: 98 Copynumber: 2.9 Consensus size: 98
774489 ATTATTAAAG
*
774499 TTAAATCATTAAAGTTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAGTTAAATTAT
1 TTAAATTATTAAAGTTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAGTTAAATTAT
774564 TAAAATTAAATCATTAAAGTTAAATAATTATTA
66 TAAAATTAAATCATTAAAGTTAAATAATTATTA
*
774597 TTAAATTATTAAAGTTAAATCATTAAAGTTAAATAATTATTATTAAATTATTAAAGTTAAATTAT
1 TTAAATTATTAAAGTTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAGTTAAATTAT
774662 TAAAATTAAATCATTAAAGTTAAATAATTATTA
66 TAAAATTAAATCATTAAAGTTAAATAATTATTA
* *
774695 TTAAATTATTAAAGTTAAATCATTAAAGTTAAATAATTATTATTAAACCATTAAAGTTAAATAAT
1 TTAAATTATTAAAGTTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAGTTAAATTAT
**
774760 TATTATTAAATCATTAAAGTTAAATA
66 TAAAATTAAATCATTAAAGTTAAATA
774786 TGTACTTGAG
Statistics
Matches: 182, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 182 1.00
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.41
Consensus pattern (98 bp):
TTAAATTATTAAAGTTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAGTTAAATTAT
TAAAATTAAATCATTAAAGTTAAATAATTATTA
Found at i:774785 original size:56 final size:56
Alignment explanation
Indices: 774480--774784 Score: 377
Period size: 56 Copynumber: 5.4 Consensus size: 56
774470 ATATCTTTAC
*
774480 TATTATTAAATTATTAAAGTTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
1 TATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
* *
774536 TATTATTAAATCATTAAAGTTAAATTATTAAAATTAAATCATTAAAGTTAAATAAT
1 TATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
* * * *
774592 TATTATTAAATTATTAAAGTTAAATCATTAAAGTTAAATAATTATTA-TTAAATTAT
1 TATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATCATTA-AAGTTAAATAAT
* * * * * *
774648 TA-AAGTTAAATTATTAAAATTAAATCATTAAAGTTAAATAATTATTA-TTAAATTAT
1 TATTA-TTAAATCATTAAAGTTAAATCATTAAAGTTAAATCATTA-AAGTTAAATAAT
* * * *
774704 TA-AAGTTAAATCATTAAAGTTAAATAATTATTA-TTAAACCATTAAAGTTAAATAAT
1 TATTA-TTAAATCATTAAAGTTAAATCATTA-AAGTTAAATCATTAAAGTTAAATAAT
774760 TATTATTAAATCATTAAAGTTAAAT
1 TATTATTAAATCATTAAAGTTAAAT
774785 ATGTACTTGA
Statistics
Matches: 224, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
55 2 0.01
56 219 0.98
57 3 0.01
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.42
Consensus pattern (56 bp):
TATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
Found at i:780031 original size:20 final size:19
Alignment explanation
Indices: 780008--780053 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
779998 CGATATACCA
780008 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
780028 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
780048 GGTAAA
1 GGTAAA
780054 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:780198 original size:20 final size:19
Alignment explanation
Indices: 780175--780221 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
780165 CGATATAACA
*
780175 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAAAC
*
780195 GGTATCAAAATGATAAAAAC
1 GGTA-AAAAATGATAAAAAC
780215 GGTAAAA
1 GGTAAAA
780222 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAAAC
Found at i:782565 original size:33 final size:33
Alignment explanation
Indices: 782523--782588 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
782513 AAATAGATGG
*
782523 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
782556 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
782589 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:784423 original size:19 final size:19
Alignment explanation
Indices: 784379--784422 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
784369 AATGTCGAGT
784379 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
784398 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
784417 T-ATTTT
1 TAATTTT
784423 TTTATGTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:784938 original size:199 final size:199
Alignment explanation
Indices: 784505--786125 Score: 3005
Period size: 199 Copynumber: 8.1 Consensus size: 199
784495 TTAAGGGTCA
*
784505 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
784570 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
784635 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
784700 AATG
196 AATG
*
784704 TGTCGACACTAATATAGTTTGTGTGGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
784769 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
784833 TAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
784898 AATG
196 AATG
*
784902 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
784967 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
785032 TAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
785097 AATG
196 AATG
*
785101 TGTCGATACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
785165 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
785230 TAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
785295 AATG
196 AATG
*
785299 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
785364 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
785429 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
785494 AATG
196 AATG
* * *
785498 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACACGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
*
785563 CATAAAGTGTCGATCCATATATAAAACAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAA-AGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
785628 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
130 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
785693 TAATG
195 TAATG
*
785698 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCCAGAATGAATTAAAAACAAGGTGCAA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTT-CCAGAATGAATTAAAAACAAGGTGCAT
*
785763 CCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAA
65 CAATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAA
*
785828 TGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAA
129 TGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAA
785893 ATAATG
194 ATAATG
* *
785899 TGTCGACACTAATATAGTTTGTGTCGAT-TTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
785963 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
* *
786028 TAATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
786093 AATG
196 AATG
*
786097 TGTCGACACTAATATATTTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
786126 CTAATTTAAA
Statistics
Matches: 1393, Mismatches: 23, Indels: 12
0.98 0.02 0.01
Matches are distributed among these distances:
198 527 0.38
199 528 0.38
200 151 0.11
201 183 0.13
202 4 0.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (199 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
AATG
Found at i:785238 original size:397 final size:398
Alignment explanation
Indices: 784505--786125 Score: 3014
Period size: 397 Copynumber: 4.1 Consensus size: 398
784495 TTAAGGGTCA
*
784505 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
784570 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
784635 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
* *
784700 AATGTGTCGACACTAATATAGTTTGTGTGGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
*
784765 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAATCATCGAACCCAAAAGTAT
261 CACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
*
784829 AATGTAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
784894 AAATAATG
391 AAATAATG
*
784902 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
784967 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
785032 TAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
*
785097 AATGTGTCGATACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAATTAAAAACAAGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
*
785161 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 CACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
*
785226 AATGTAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
785291 AAATAATG
391 AAATAATG
*
785299 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
785364 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
785429 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
*
785494 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACACGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
*
785559 CACCCATAAAGTGTCGATCCATATATAAAACAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
261 CACCAATAAAGTGTCGATCCATATATAAAA-AGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
785624 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
325 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
785689 TAAATAATG
390 TAAATAATG
*
785698 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCCAGAATGAATTAAAAACAAGGTGCAA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTT-CCAGAATGAATTAAAAACAAGGTGCAT
*
785763 CCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAA
65 CAATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAA
*
785828 TGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAA
129 TGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAA
785893 ATAATGTGTCGACACTAATATAGTTTGTGTCGAT-TTTTTTTCCCAGAATGAATTAAAAACAAGG
194 ATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGG
785957 TGCACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGT
259 TGCACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGT
* *
786022 ATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGT
324 ATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGT
786087 CTAAATAATG
389 CTAAATAATG
*
786097 TGTCGACACTAATATATTTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
786126 CTAATTTAAA
Statistics
Matches: 1199, Mismatches: 20, Indels: 8
0.98 0.02 0.01
Matches are distributed among these distances:
396 66 0.06
397 557 0.46
398 51 0.04
399 278 0.23
400 108 0.09
401 139 0.12
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (398 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
CACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
AAATAATG
Found at i:787605 original size:18 final size:18
Alignment explanation
Indices: 787582--787649 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 18
787572 ATCAGTCGCA
787582 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* *
787600 GAAGATGACGATGATGATGAT
1 GAAGATGA--A-GCTGACGAT
*
787621 GATGACGATGAAGCTGGCGAT
1 GA--A-GATGAAGCTGACGAT
787642 GAAGATGA
1 GAAGATGA
787650 TGACGATGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 13 0.33
19 1 0.03
20 1 0.03
21 17 0.44
22 1 0.03
23 1 0.03
24 5 0.13
ACGTcount: A:0.37, C:0.09, G:0.35, T:0.19
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Done.