Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008926.1 Hibiscus syriacus cultivar Beakdansim tig00112231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4069050
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 20
Found at i:1289982 original size:213 final size:213
Alignment explanation
Indices: 1289595--1290199 Score: 870
Period size: 213 Copynumber: 2.8 Consensus size: 213
1289585 ATATGTGTTT
* * **
1289595 TATTACTATAAAGTAATAAGTAAATTAACAATGTAAACAGATAAAAGTGTTCCAGTATAATGAAA
1 TATTACTTTAAAGTAATAGGTAAATTAACAATGTAAAC-GATAAAAGTGTTCTGGTATAATGAAA
* ***
1289660 ATAATCGTAAATAACAAGTAGCGATACTTGTTATTTACACCTATTTTCATTACACCAATAGACTT
65 ATAGTCGTAAATAACAAGTAGCGATACTTGTTATTTACACCTATTTTCATTACATTGATAGACTT
*
1289725 TTACCGTTTACATTGTTAATTTACCTAAGTATCAATACTTTATACATGTAAATAACAAATATCGA
130 TTACCGTTTACATTGTTAATTTAGCTAAGTATCAATACTTTATACATGTAAATAACAAATATCGA
* *
1289790 TAATTGGAATTTTGAAACC
195 TAATTGGAACTTCGAAACC
* * *
1289809 TATTATTTTAATGTAATAGGTAAATTAACAATGTAAACTGATAAAAGTGTTATGGTATAATGAAA
1 TATTACTTTAAAGTAATAGGTAAATTAACAATGTAAAC-GATAAAAGTGTTCTGGTATAATGAAA
* * * * *
1289874 ATAGT-GTAAATAACATGTAGCAATACCTGTTATTTACGCCTATTTTCATCACATTGATAGACTT
65 ATAGTCGTAAATAACAAGTAGCGATACTTGTTATTTACACCTATTTTCATTACATTGATAGACTT
* * * *
1289938 TTACCATTTACATTGTTAATTTAGCTAAGTATCAATAATTTATACATGTAAATAGCAAGTATCGA
130 TTACCGTTTACATTGTTAATTTAGCTAAGTATCAATACTTTATACATGTAAATAACAAATATCGA
* *
1290003 TACTTTGAACTTCGAAACC
195 TAATTGGAACTTCGAAACC
* *
1290022 TATTACTTTAAAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTGTTCTGGTATATTGAAAA
1 TATTACTTTAAAGTAATAGGTAAATTAACAATGTAAACGATAAAAGTGTTCTGGTATAATGAAAA
* * * *
1290087 TAGTCGTAAATAACAAATAGTGATACTTGTTATTTACATCTATTTTCATTACATTGGTAGACTTT
66 TAGTCGTAAATAACAAGTAGCGATACTTGTTATTTACACCTATTTTCATTACATTGATAGACTTT
* * **
1290152 TATCGTATACATTGTTAATTTAGCTAAGTATTGATACTTTATACATGT
131 TACCGTTTACATTGTTAATTTAGCTAAGTATCAATACTTTATACATGT
1290200 GTATCTTTTA
Statistics
Matches: 344, Mismatches: 46, Indels: 3
0.88 0.12 0.01
Matches are distributed among these distances:
212 28 0.08
213 255 0.74
214 61 0.18
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (213 bp):
TATTACTTTAAAGTAATAGGTAAATTAACAATGTAAACGATAAAAGTGTTCTGGTATAATGAAAA
TAGTCGTAAATAACAAGTAGCGATACTTGTTATTTACACCTATTTTCATTACATTGATAGACTTT
TACCGTTTACATTGTTAATTTAGCTAAGTATCAATACTTTATACATGTAAATAACAAATATCGAT
AATTGGAACTTCGAAACC
Found at i:1290775 original size:6 final size:6
Alignment explanation
Indices: 1290764--1290809 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
1290754 AGTGGAGCTT
* * *
1290764 AAATTG AAATTG AAATTC AATTTA AAATTG AAATTG AAATTG AAAT
1 AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAAT
1290810 ATGCATAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.35
Consensus pattern (6 bp):
AAATTG
Found at i:1294309 original size:24 final size:24
Alignment explanation
Indices: 1294282--1294378 Score: 185
Period size: 24 Copynumber: 4.0 Consensus size: 24
1294272 TGCATGACAT
1294282 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
1294306 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
1294330 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
*
1294354 TGTACATAGATGTGTTATACATCA
1 TGTACATAGATGTTTTATACATCA
1294378 T
1 T
1294379 TAGGAAGACT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.41
Consensus pattern (24 bp):
TGTACATAGATGTTTTATACATCA
Found at i:1301483 original size:106 final size:106
Alignment explanation
Indices: 1301294--1301997 Score: 1131
Period size: 106 Copynumber: 6.6 Consensus size: 106
1301284 AAAAGTTGTC
* * * * ** *
1301294 TGTCAACAAACAACTT-TCCAATTTCATTCGGAGTCTATTTCAACTTCGCAGCGAAAAAAATTGG
1 TGTCAACAAACAACTTCT-CAATTTCA----GAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
1301358 ACTCCAGACAACACATGTTCAACTTCACGACGAAGGGACCGCTGGT
61 ACTCCAGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
* * *
1301404 TGTCAACAAATAACTTCTTAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCC
1 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
1301469 AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
66 AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
* * * *
1301510 TGTCAACAAACAATTTCCCAATATCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCC
1 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
1301575 AGACAACGCATGTTCAACTTCACGATGAAGGGACTGCTGGT
66 AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
1301616 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
1 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
1301681 AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
66 AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
*
1301722 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAATGATATTGGACTCC
1 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
1301787 AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
66 AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
* *
1301828 TGTCAACAAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGGACTCC
1 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
1301893 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
66 AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
* * * *
1301934 TGTCAATAAACAAATTCCCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTC
1 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
1301998 GGAACAATGC
Statistics
Matches: 560, Mismatches: 33, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
106 537 0.96
110 22 0.04
111 1 0.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (106 bp):
TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
Found at i:1302299 original size:84 final size:84
Alignment explanation
Indices: 1302161--1302554 Score: 472
Period size: 84 Copynumber: 4.7 Consensus size: 84
1302151 CAGCTTTGAG
* * * * * *
1302161 GGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCA-AAGACCTTCGAGTT
1 GGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACACAAGACCTTCGAGTT
1302225 CGACTACGCTCAGCTCCAA
66 CGACTACGCTCAGCTCCAA
* * * * *
1302244 GGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACACAAGACCTTTGAGTT
1 GGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACACAAGACCTTCGAGTT
1302309 CGACTACGCTCAGCT-CAA
66 CGACTACGCTCAGCTCCAA
* * *
1302327 CGGCACATCATTTGCAGCATAACTTATGTCGAGAAGGGTTATCTGCCAACCAAAAAATCCTTCGA
1 -GGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAA-CACAAGA-CCTTCGA
* *
1302392 GTTCGATTACACTCAGCTCCAA
63 GTTCGACTACGCTCAGCTCCAA
* * * * * * * *
1302414 GGTACATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGCCAAC-CAAAGACCTTCGAGT
1 GGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAC-AAGACCTTCGAGT
*
1302478 TTGACTACGCTCAGCTCCAA
65 TCGACTACGCTCAGCTCCAA
* *
1302498 GGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAC-CAAAGACC
1 GGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAC-AAGACC
1302555 CGACGAGTTT
Statistics
Matches: 266, Mismatches: 39, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
83 45 0.17
84 148 0.56
85 9 0.03
86 61 0.23
87 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (84 bp):
GGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACACAAGACCTTCGAGTT
CGACTACGCTCAGCTCCAA
Found at i:1302428 original size:170 final size:169
Alignment explanation
Indices: 1302124--1302550 Score: 511
Period size: 170 Copynumber: 2.5 Consensus size: 169
1302114 AGGCTATCTG
** * * ** * * * *
1302124 CCAAAGACCCCCGAGTTCGATTACACTCAGCTTTGAGGGCACATCATTTACAGCATAACTCAAGG
1 CCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGT
* * * * *
1302189 CTAGAAGGGTTATCTGTC-ACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATC
65 CGAGAAGGGTTATCTGCCAACCAAAAAACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATC
* * * * * *
1302252 ATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAA
130 ATTTGCAACACAACTCAAGGCAAGAAGGGCTATCTGCCAA
* *
1302292 -CACAAGACCTTTGAGTTCGACTACGCTCAGCT-CAACGGCACATCATTTGCAGCATAACTTATG
1 CCA-AAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAG
* *
1302355 TCGAGAAGGGTTATCTGCCAACCAAAAAATCCTTCGAGTTCGATTACACTCAGCTCCAAGGTACA
64 TCGAGAAGGGTTATCTGCCAACCAAAAAA-CCTTCGAGTTCGACTACACTCAGCTCCAAGGCACA
* * *
1302420 TCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGCCAA
128 TCATTTGCAACACAACTCAAGGCAAGAAGGGCTATCTGCCAA
* *
1302462 CCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTC
1 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTC
*
1302527 GAGAAGGGCTATCTGCCAACCAAA
66 GAGAAGGGTTATCTGCCAACCAAA
1302551 GACCCGACGA
Statistics
Matches: 220, Mismatches: 32, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
166 1 0.00
167 43 0.20
168 26 0.12
169 4 0.02
170 141 0.64
171 5 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (169 bp):
CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTC
GAGAAGGGTTATCTGCCAACCAAAAAACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCA
TTTGCAACACAACTCAAGGCAAGAAGGGCTATCTGCCAA
Found at i:1304278 original size:18 final size:18
Alignment explanation
Indices: 1304257--1304317 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
1304247 ACCTTACTTG
1304257 AGAAGAAGACCTTGGTTA
1 AGAAGAAGACCTTGGTTA
* * *
1304275 AGAAGATGACCTTGCTTG
1 AGAAGAAGACCTTGGTTA
***
1304293 AGAAGAAGGTTTTGGTTA
1 AGAAGAAGACCTTGGTTA
1304311 AGAAGAA
1 AGAAGAA
1304318 CTGCGTCTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.38, C:0.08, G:0.30, T:0.25
Consensus pattern (18 bp):
AGAAGAAGACCTTGGTTA
Found at i:1304294 original size:36 final size:36
Alignment explanation
Indices: 1304247--1304316 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
1304237 TATCAAAAAT
1304247 ACCTTACTTGAGAAGAAGACCTTGGTTAAGAAGATG
1 ACCTTACTTGAGAAGAAGACCTTGGTTAAGAAGATG
* ***
1304283 ACCTTGCTTGAGAAGAAGGTTTTGGTTAAGAAGA
1 ACCTTACTTGAGAAGAAGACCTTGGTTAAGAAGA
1304317 ACTGCGTCTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.27
Consensus pattern (36 bp):
ACCTTACTTGAGAAGAAGACCTTGGTTAAGAAGATG
Found at i:1305408 original size:193 final size:193
Alignment explanation
Indices: 1305079--1305590 Score: 659
Period size: 193 Copynumber: 2.6 Consensus size: 193
1305069 TTTTTTTTAT
* * *
1305079 TTCTTTTCAATTCCTAAAGTACCGATACTATGGTACATATACTTATAAAAGTATCGATACTTTCA
1 TTCTTTTCAATTCCTACAGTACCGATACTTTGGTACATATACTTATAAAAGTATCGATAATTTCA
* * * * * *
1305144 ACAATTCTAGTAGCGCTTTACCGGTTTTGTCAAATTAAAATTGGTTTTGTCAAATTTTAACATGT
66 ACAATTCCA-TAGCTCTTTACCGGTTTTGTCAAATTGAAATCGATTTTGTCAAATTTCAACATGT
* * *
1305209 TATATTGTCATGTATAGATACATGTTTCTAAGGTATAGATACT-TTATAGGCGTTATTATT-AAA
130 TATATTGTCATGTATAGATACATGTGTCTAAGGTATAGATACTATT-TAGCCGCTATTATTGAAA
* * *
1305272 TTCTTTTCAATTCCTACAGTACCGATACTTTGGTACACATACTTATAAAAGTATTGATAATGTCA
1 TTCTTTTCAATTCCTACAGTACCGATACTTTGGTACATATACTTATAAAAGTATCGATAATTTCA
* *
1305337 ACAATTCCATTAGCTCTTTACCAGTTTTGTCAAATTGAAATCGATTTTGTCAAATTTCAACCTGT
66 ACAATTCCA-TAGCTCTTTACCGGTTTTGTCAAATTGAAATCGATTTTGTCAAATTTCAACATGT
* * * *
1305402 TATATTGTCATGTATCGATACATGTGTGTAAGGTATCGATACTATTTAGCCGCTATTATTGCAA
130 TATATTGTCATGTATAGATACATGTGTCTAAGGTATAGATACTATTTAGCCGCTATTATTGAAA
* ** * * *
1305466 TTCTTTTAAATTCCTACAACACCGATAATTTGGTACATATACTTATAAACGAATCGATACAAATT
1 TTCTTTTCAATTCCTACAGTACCGATACTTTGGTACATATACTTATAAAAGTATCGAT---AATT
* * * *
1305531 TCAACAATTCTGATAGTTGTTTACCGGTTTTGTCAAAATTGAAACCGATTTTGTCAAATT
63 TCAACAATTC-CATAGCTCTTTACCGGTTTTGTC-AAATTGAAATCGATTTTGTCAAATT
1305591 CAATCGATTT
Statistics
Matches: 276, Mismatches: 36, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
193 166 0.60
194 54 0.20
197 31 0.11
198 25 0.09
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (193 bp):
TTCTTTTCAATTCCTACAGTACCGATACTTTGGTACATATACTTATAAAAGTATCGATAATTTCA
ACAATTCCATAGCTCTTTACCGGTTTTGTCAAATTGAAATCGATTTTGTCAAATTTCAACATGTT
ATATTGTCATGTATAGATACATGTGTCTAAGGTATAGATACTATTTAGCCGCTATTATTGAAA
Found at i:1305600 original size:19 final size:19
Alignment explanation
Indices: 1305553--1305630 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 19
1305543 ATAGTTGTTT
* *
1305553 ACCGGTTTTGTCAAAATTGAA
1 ACCGATTTTGTC-AAATT-CA
1305574 ACCGATTTTGTCAAATTCA
1 ACCGATTTTGTCAAATTCA
*
1305593 ATCGATTTTGTC-AATTACCA
1 ACCGATTTTGTCAAATT--CA
*
1305613 ACCAATTTTGTCAAATTC
1 ACCGATTTTGTCAAATTC
1305631 TTTACCTCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
18 4 0.08
19 13 0.27
20 17 0.35
21 15 0.31
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (19 bp):
ACCGATTTTGTCAAATTCA
Found at i:1305836 original size:10 final size:11
Alignment explanation
Indices: 1305821--1305852 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
1305811 TTCACTTTCT
1305821 TATATAT-TAC
1 TATATATATAC
1305831 TATATATATA-
1 TATATATATAC
1305841 TATATATATAC
1 TATATATATAC
1305852 T
1 T
1305853 TCTATGCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 17 0.85
11 3 0.15
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (11 bp):
TATATATATAC
Found at i:1306730 original size:24 final size:24
Alignment explanation
Indices: 1306703--1306752 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
1306693 TCTATAAACT
1306703 TTGGTTAACCAAGC-TATGTTTTTC
1 TTGGTTAACCAAGCGT-TGTTTTTC
* *
1306727 TTGGTTAACTAATCGTTGTTTTTC
1 TTGGTTAACCAAGCGTTGTTTTTC
1306751 TT
1 TT
1306753 TCTTATGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.18, C:0.14, G:0.16, T:0.52
Consensus pattern (24 bp):
TTGGTTAACCAAGCGTTGTTTTTC
Found at i:1311077 original size:29 final size:29
Alignment explanation
Indices: 1311044--1311115 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
1311034 TGCTTAGTAA
1311044 GAATATAAGATTACAGTGTTTGATCAAAT
1 GAATATAAGATTACAGTGTTTGATCAAAT
1311073 GAATATAAGATTACAGTGTTTGATCAAAT
1 GAATATAAGATTACAGTGTTTGATCAAAT
*
1311102 GAATATAAAATTAC
1 GAATATAAGATTAC
1311116 TTGGATACAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33
Consensus pattern (29 bp):
GAATATAAGATTACAGTGTTTGATCAAAT
Found at i:1311283 original size:31 final size:33
Alignment explanation
Indices: 1311246--1311323 Score: 115
Period size: 31 Copynumber: 2.4 Consensus size: 33
1311236 CTATGTTTAT
* *
1311246 AGAAAAACATACATCATATTAATAAAAA-AAAC
1 AGAAAAACATACATCAGATTAATAAAAAGAAAA
*
1311278 A-AAAAACATACATCAGATTACTAAAAAGAAAA
1 AGAAAAACATACATCAGATTAATAAAAAGAAAA
1311310 AGAAAAACATACAT
1 AGAAAAACATACAT
1311324 TTAACATATA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
31 24 0.59
32 5 0.12
33 12 0.29
ACGTcount: A:0.65, C:0.13, G:0.05, T:0.17
Consensus pattern (33 bp):
AGAAAAACATACATCAGATTAATAAAAAGAAAA
Found at i:1311540 original size:18 final size:17
Alignment explanation
Indices: 1311498--1311541 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
1311488 TTAAAAATTA
1311498 AATATTATTTTAAATAAT
1 AATATT-TTTTAAATAAT
* *
1311516 TACATTTTTTACAATAAT
1 AATATTTTTTA-AATAAT
1311534 AATATTTT
1 AATATTTT
1311542 CACGACATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (17 bp):
AATATTTTTTAAATAAT
Found at i:1311655 original size:3 final size:3
Alignment explanation
Indices: 1311647--1311692 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
1311637 CTCTTTATAC
1311647 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1311693 AGTTTATAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:1313241 original size:27 final size:27
Alignment explanation
Indices: 1313204--1313288 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
1313194 TGGCATATTT
1313204 ATGCACGTCCCCTCTTGCTCCCCGCTGC
1 ATGC-CGTCCCCTCTTGCTCCCCGCTGC
* * *
1313232 ATGCCGTCCCCTCTTGCTCCTCGTTGT
1 ATGCCGTCCCCTCTTGCTCCCCGCTGC
* *
1313259 ATGACGTCCCCTCCTGCTCCCCGCTGC
1 ATGCCGTCCCCTCTTGCTCCCCGCTGC
1313286 ATG
1 ATG
1313289 TCGTTGTAGC
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 45 0.92
28 4 0.08
ACGTcount: A:0.07, C:0.46, G:0.19, T:0.28
Consensus pattern (27 bp):
ATGCCGTCCCCTCTTGCTCCCCGCTGC
Found at i:1313489 original size:26 final size:26
Alignment explanation
Indices: 1313460--1313517 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
1313450 ACATAAAAGA
*
1313460 AAGAAAGGGAGAAGAGATTGCAGCCG
1 AAGAAAGGGAGAAGAGAGTGCAGCCG
*
1313486 AAGAAAGGGAGAAGATAGTGCAGCCG
1 AAGAAAGGGAGAAGAGAGTGCAGCCG
1313512 -AGAAAG
1 AAGAAAG
1313518 AAAGAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 6 0.20
26 24 0.80
ACGTcount: A:0.45, C:0.10, G:0.38, T:0.07
Consensus pattern (26 bp):
AAGAAAGGGAGAAGAGAGTGCAGCCG
Found at i:1314036 original size:15 final size:16
Alignment explanation
Indices: 1314008--1314041 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
1313998 AAAGTTTACT
1314008 TTATAAGTTTATTATA
1 TTATAAGTTTATTATA
1314024 TTATAAG-TTATTATA
1 TTATAAGTTTATTATA
1314039 TTA
1 TTA
1314042 AATATTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TTATAAGTTTATTATA
Found at i:1316319 original size:59 final size:56
Alignment explanation
Indices: 1316256--1316376 Score: 161
Period size: 59 Copynumber: 2.1 Consensus size: 56
1316246 TATTATAATT
* * * *
1316256 TCATTACTAGTTATCATTAGTAAATCATTAGTATCAAATAATTAAATATTAATAATAAA
1 TCATTACTAATAATAATTAGTAAATCATCAGTATCAAATAATTAAATATT--TAA-AAA
* *
1316315 TCATTATTAATAATAATTAGTAAATCATCAGTATCAAATCATTAAATATTTAAAAA
1 TCATTACTAATAATAATTAGTAAATCATCAGTATCAAATAATTAAATATTTAAAAA
1316371 TCATTA
1 TCATTA
1316377 ATAAATTCGA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 9 0.16
57 3 0.05
59 44 0.79
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (56 bp):
TCATTACTAATAATAATTAGTAAATCATCAGTATCAAATAATTAAATATTTAAAAA
Found at i:1316398 original size:59 final size:58
Alignment explanation
Indices: 1316271--1316382 Score: 165
Period size: 59 Copynumber: 1.9 Consensus size: 58
1316261 ACTAGTTATC
* *
1316271 ATTAGTAAATCATTAGTATCAAATAATTAAATATTAATAATAAATCATTATTAATAATA
1 ATTAGTAAATCATCAGTATCAAATAATTAAATATT-ATAATAAATCATTATAAATAATA
*
1316330 ATTAGTAAATCATCAGTATCAAATCATTAAATATT-TAA-AAATCATTAATAAAT
1 ATTAGTAAATCATCAGTATCAAATAATTAAATATTATAATAAATCATT-ATAAAT
1316383 TCGACTATGT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
56 8 0.16
57 8 0.16
59 33 0.67
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.38
Consensus pattern (58 bp):
ATTAGTAAATCATCAGTATCAAATAATTAAATATTATAATAAATCATTATAAATAATA
Found at i:1316530 original size:49 final size:51
Alignment explanation
Indices: 1316437--1316836 Score: 301
Period size: 49 Copynumber: 8.2 Consensus size: 51
1316427 CTCATTTGTT
* * * *
1316437 ATTATTCT-ATAATTATTAGT-AATAATTATTAAATCATTAGTATTAAATC
1 ATTATTATAATAATTATTACTAAATCATTATTAAATCATTATTATTAAATC
* *
1316486 ATTATTATAA-AATCATTACTAAATCATTATTAAAT-ATTACTATTAAATC
1 ATTATTATAATAATTATTACTAAATCATTATTAAATCATTATTATTAAATC
* *
1316535 ATTATTATAATGATTATTATTAAATCATTATT--ATCATTATTATTAAATC
1 ATTATTATAATAATTATTACTAAATCATTATTAAATCATTATTATTAAATC
* *
1316584 ATTATTATAATAATTATTACTAAATCATTATTATAATGATTATTATCAAATC
1 ATTATTATAATAATTATTACTAAATCATTATTA-AATCATTATTATTAAATC
* * * * * *
1316636 ATTACTA-AATCATCAAATCATTAAAT-ATTA--AAATCATTATTA-T-AATG
1 ATTATTATAATAAT--TATTACTAAATCATTATTAAATCATTATTATTAAATC
* * * * *
1316683 ATTATTACTAAATCATTATTA-TAATGATTATTATCAAATCATTACTA-T-AATG
1 ATTATTA-T-AATAATTATTACTAA--ATCATTATTAAATCATTATTATTAAATC
* * * *
1316735 ATTATTATCA-AATCATTACT-AA--ATTATCAAATCATTAAATATTAAATTC
1 ATTATTATAATAATTATTACTAAATCATTATTAAATCATT-ATTATTAAA-TC
*
1316784 ATTATTA-AAT--TTATTATTAAATCATTATT-AA--ATTATTATTAAATC
1 ATTATTATAATAATTATTACTAAATCATTATTAAATCATTATTATTAAATC
*
1316829 ATTTTTAT
1 ATTATTAT
1316837 GGTTAATTGA
Statistics
Matches: 288, Mismatches: 36, Indels: 57
0.76 0.09 0.15
Matches are distributed among these distances:
45 22 0.08
46 11 0.04
47 23 0.08
48 10 0.03
49 110 0.38
50 50 0.17
51 6 0.02
52 48 0.17
53 8 0.03
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (51 bp):
ATTATTATAATAATTATTACTAAATCATTATTAAATCATTATTATTAAATC
Found at i:1316557 original size:26 final size:26
Alignment explanation
Indices: 1316437--1316836 Score: 232
Period size: 26 Copynumber: 16.3 Consensus size: 26
1316427 CTCATTTGTT
* * *
1316437 ATTATTCT-ATAATTATTAGT-AATA
1 ATTATTATAATAATTATTATTAAATC
* *
1316461 ATTATTA-AATCATTAGTATTAAATC
1 ATTATTATAATAATTATTATTAAATC
* *
1316486 ATTATTATAA-AATCATTACTAAATC
1 ATTATTATAATAATTATTATTAAATC
*
1316511 ATTATTA-AAT-ATTACTATTAAATC
1 ATTATTATAATAATTATTATTAAATC
*
1316535 ATTATTATAATGATTATTATTAAATC
1 ATTATTATAATAATTATTATTAAATC
*
1316561 ATTA-T-T-ATCATTATTATTAAATC
1 ATTATTATAATAATTATTATTAAATC
*
1316584 ATTATTATAATAATTATTACTAAATC
1 ATTATTATAATAATTATTATTAAATC
* *
1316610 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATAATTATTATTAAATC
* * * *
1316636 ATTACTA-AATCATCAAATCATTAAAT-
1 ATTATTATAATAAT--TATTATTAAATC
* *
1316662 ATTA--A-AATCATTATTA-T-AATG
1 ATTATTATAATAATTATTATTAAATC
* *
1316683 ATTATTACT-A-AATCATTATTATAATG
1 ATTATTA-TAATAATTATTATTA-AATC
* * * *
1316709 ATTATTATCA-AATCATTACTATAATG
1 ATTATTATAATAATTATTATTA-AATC
* * *
1316735 ATTATTATCA-AATCATTACT-AA--
1 ATTATTATAATAATTATTATTAAATC
* * *
1316757 ATTATCA-AATCATTAAATATTAAATTC
1 ATTATTATAATAATT-ATTATTAAA-TC
1316784 ATTATTA-AAT--TTATTATTAAATC
1 ATTATTATAATAATTATTATTAAATC
1316807 ATTA-T-T-A-AATTATTATTAAATC
1 ATTATTATAATAATTATTATTAAATC
*
1316829 ATTTTTAT
1 ATTATTAT
1316837 GGTTAATTGA
Statistics
Matches: 307, Mismatches: 38, Indels: 62
0.75 0.09 0.15
Matches are distributed among these distances:
20 3 0.01
21 7 0.02
22 28 0.09
23 38 0.12
24 59 0.19
25 41 0.13
26 114 0.37
27 17 0.06
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (26 bp):
ATTATTATAATAATTATTATTAAATC
Found at i:1316650 original size:14 final size:13
Alignment explanation
Indices: 1316461--1316752 Score: 200
Period size: 14 Copynumber: 22.1 Consensus size: 13
1316451 ATTAGTAATA
1316461 ATTATTAAATCATT
1 ATTA-TAAATCATT
*
1316475 AGTATTAAATCATT
1 ATTA-TAAATCATT
1316489 ATTATAAAATCATT
1 ATTAT-AAATCATT
*
1316503 A--CTAAATCATT
1 ATTATAAATCATT
1316514 A-T-TAAAT-ATT
1 ATTATAAATCATT
*
1316524 ACTATTAAATCATT
1 ATTA-TAAATCATT
*
1316538 ATTAT-AATGATT
1 ATTATAAATCATT
1316550 ATTATTAAATCATT
1 ATTA-TAAATCATT
1316564 A-T-T--ATCATT
1 ATTATAAATCATT
1316573 ATTATTAAATCATT
1 ATTA-TAAATCATT
*
1316587 ATTAT-AATAATT
1 ATTATAAATCATT
1316599 ATTACTAAATCATT
1 ATTA-TAAATCATT
*
1316613 ATTAT-AATGATT
1 ATTATAAATCATT
1316625 ATTATCAAATCATT
1 ATTAT-AAATCATT
1316639 ACTAAATCATCAAATCATT
1 A-T---T-AT-AAATCATT
*
1316658 AAATATTAAAATCATT
1 -ATTA-T-AAATCATT
*
1316674 ATTAT-AATGATT
1 ATTATAAATCATT
1316686 ATTACTAAATCATT
1 ATTA-TAAATCATT
*
1316700 ATTAT-AATGATT
1 ATTATAAATCATT
1316712 ATTATCAAATCATT
1 ATTAT-AAATCATT
* *
1316726 ACTAT-AATGATT
1 ATTATAAATCATT
1316738 ATTATCAAATCATT
1 ATTAT-AAATCATT
1316752 A
1 A
1316753 CTAAATTATC
Statistics
Matches: 227, Mismatches: 21, Indels: 60
0.74 0.07 0.19
Matches are distributed among these distances:
9 7 0.03
10 5 0.02
11 16 0.07
12 64 0.28
13 14 0.06
14 93 0.41
15 5 0.02
16 10 0.04
18 1 0.00
19 11 0.05
20 1 0.00
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.45
Consensus pattern (13 bp):
ATTATAAATCATT
Found at i:1316678 original size:52 final size:52
Alignment explanation
Indices: 1316622--1316790 Score: 128
Period size: 50 Copynumber: 3.1 Consensus size: 52
1316612 TATTATAATG
1316622 ATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTAAAATCATT
1 ATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTAAAATCATT
* * * * * * *
1316674 ATTATAAT--GATTATTACTAAATCATTATTATAATGATT-ATTATCAAATCATTACTATAAT
1 ATTATTATCAAATCATTACTAAATC---ATCA-AATCATTAAATATTAAA--A-T-C-AT--T
* *
1316734 GATTATTATCAAATCATTACTAAATTATCAAATCATTAAATATTAAATTCATT
1 -ATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTAAAATCATT
1316787 ATTA
1 ATTA
1316791 AATTTATTAT
Statistics
Matches: 86, Mismatches: 16, Indels: 30
0.65 0.12 0.23
Matches are distributed among these distances:
50 13 0.15
52 11 0.13
53 11 0.13
54 6 0.07
55 3 0.03
56 2 0.02
57 2 0.02
58 2 0.02
59 6 0.07
60 11 0.13
61 7 0.08
63 12 0.14
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.42
Consensus pattern (52 bp):
ATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTAAAATCATT
Found at i:1316722 original size:113 final size:112
Alignment explanation
Indices: 1316552--1316824 Score: 416
Period size: 113 Copynumber: 2.5 Consensus size: 112
1316542 TAATGATTAT
*
1316552 TATT-AAATCATTATTAT--CATTATTATTAAATCATTATTATAATAATTATTACTAAATCATTA
1 TATTAAAATCATTATTATAATATTATTATTAAATCATTATTATAATAATTATTACTAAATCATTA
*
1316614 TTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
* *
1316661 TATTAAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTA-TCAAATCAT
1 TATTAAAATCATTATTATAAT-ATTATTATTAAATCATTATTATAATAATTATTACT-AAATCAT
*
1316725 TACTATAATGATTATTATCAAATCATTACTAAATTATCAAATCATTAAA
64 TACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
* *
1316774 TATTAAATTCATTATTA-AAT-TTATTATTAAATCATTATTA-AATTATTATTA
1 TATTAAAATCATTATTATAATATTATTATTAAATCATTATTATAATAATTATTA
1316825 AATCATTTTT
Statistics
Matches: 151, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
109 14 0.09
110 32 0.21
112 4 0.03
113 101 0.67
ACGTcount: A:0.45, C:0.09, G:0.01, T:0.45
Consensus pattern (112 bp):
TATTAAAATCATTATTATAATATTATTATTAAATCATTATTATAATAATTATTACTAAATCATTA
CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
Found at i:1316791 original size:12 final size:12
Alignment explanation
Indices: 1316774--1316831 Score: 86
Period size: 11 Copynumber: 5.1 Consensus size: 12
1316764 AATCATTAAA
1316774 TATTAAATTCAT
1 TATTAAATTCAT
*
1316786 TATTAAATTTAT
1 TATTAAATTCAT
1316798 TATTAAA-TCAT
1 TATTAAATTCAT
1316809 TATTAAATT-AT
1 TATTAAATTCAT
1316820 TATTAAA-TCAT
1 TATTAAATTCAT
1316831 T
1 T
1316832 TTTATGGTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
10 1 0.02
11 22 0.52
12 19 0.45
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTAAATTCAT
Found at i:1317053 original size:21 final size:20
Alignment explanation
Indices: 1317026--1317103 Score: 61
Period size: 21 Copynumber: 3.9 Consensus size: 20
1317016 ATAATTTCAT
1317026 TATTACTAATAATTACTAAA
1 TATTACTAATAATTACTAAA
* * *
1317046 TCATTACTATTAAATCATTAAA
1 T-ATTACTAAT-AATTACTAAA
* * *
1317068 TATTAATAATAATT--TCAT
1 TATTACTAATAATTACTAAA
*
1317086 TATTACTAATCATTACTA
1 TATTACTAATAATTACTA
1317104 TCAAATCATT
Statistics
Matches: 43, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
18 14 0.33
20 5 0.12
21 15 0.35
22 9 0.21
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.44
Consensus pattern (20 bp):
TATTACTAATAATTACTAAA
Found at i:1317110 original size:49 final size:49
Alignment explanation
Indices: 1317037--1317225 Score: 360
Period size: 49 Copynumber: 3.8 Consensus size: 49
1317027 ATTACTAATA
*
1317037 ATTACTAAATCATTACTATTAAATCATTAAATATTAATAATAATTTCATT
1 ATTACT-AATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1317087 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1317136 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1317185 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATA
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATA
1317226 GATGGGTGCC
Statistics
Matches: 138, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
49 132 0.96
50 6 0.04
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (49 bp):
ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
Found at i:1320120 original size:5 final size:5
Alignment explanation
Indices: 1320110--1320134 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
1320100 TAAATCATTA
1320110 AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT
1320135 TAACGATCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:1320567 original size:17 final size:17
Alignment explanation
Indices: 1320512--1320572 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
1320502 ACAATATAAA
* *
1320512 TTAAACAAAATATTTTT
1 TTAAACACAATAATTTT
*
1320529 TTAAAACAACACTAAATATTT
1 TT-AAAC-ACAAT-AAT-TTT
1320550 TTAAACACAATAATTTT
1 TTAAACACAATAATTTT
1320567 TTAAAC
1 TTAAAC
1320573 GGAAATTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
17 11 0.31
18 7 0.19
19 7 0.19
20 6 0.17
21 5 0.14
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAACACAATAATTTT
Found at i:1320710 original size:5 final size:5
Alignment explanation
Indices: 1320700--1320732 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
1320690 TTATGCCTTC
1320700 TTCCT TTCCT TTCCT TTCCT TTCCT TTCCT TTC
1 TTCCT TTCCT TTCCT TTCCT TTCCT TTCCT TTC
1320733 TTGTTTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (5 bp):
TTCCT
Found at i:1321090 original size:50 final size:44
Alignment explanation
Indices: 1320999--1321106 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 44
1320989 GTTTAAAGAC
*
1320999 ACTAACAAATTAATTAAATATTTTTTATATATTTAATAACTTAA
1 ACTAACAAACTAATTAAATATTTTTTATATATTTAATAACTTAA
* *
1321043 ACTAAGAAACTAATTAACTAATTTTTTATATAATATAATATATAACTTAA
1 ACTAACAAACTAATTAAAT-ATTTTTTATAT-AT-T--TA-ATAACTTAA
1321093 ACTAACAAACTAAT
1 ACTAACAAACTAAT
1321107 ATAATATAAC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
44 16 0.30
45 11 0.20
46 2 0.04
47 1 0.02
49 2 0.04
50 22 0.41
ACGTcount: A:0.50, C:0.09, G:0.01, T:0.40
Consensus pattern (44 bp):
ACTAACAAACTAATTAAATATTTTTTATATATTTAATAACTTAA
Found at i:1321113 original size:28 final size:30
Alignment explanation
Indices: 1321073--1321135 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 30
1321063 ATTTTTTATA
1321073 TAATATAATATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
1321103 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
1321131 TAATA
1 TAATA
1321136 ATTTATACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 26 0.79
29 1 0.03
30 6 0.18
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:1321142 original size:28 final size:28
Alignment explanation
Indices: 1321077--1321142 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
1321067 TTTATATAAT
1321077 ATAATATATAACTTAAACTAACAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
1321105 AT-ATAATATAACTTAAACTAACAAACTA
1 ATAAT-ATATAACTTAAACTAACAAACTA
*
1321133 ATAATTTATA
1 ATAATATATA
1321143 CTAACAAACT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
27 2 0.06
28 31 0.89
29 2 0.06
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:1321145 original size:21 final size:21
Alignment explanation
Indices: 1321112--1321160 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
1321102 CTAATATAAT
1321112 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
1321133 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
1321154 ATTAACT
1 A-TAACT
1321161 AAATTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:1321553 original size:25 final size:25
Alignment explanation
Indices: 1321524--1321574 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
1321514 TAATAATGCA
*
1321524 GCTATGGATGCAACGCATGCATGAG
1 GCTATGGATACAACGCATGCATGAG
*
1321549 GCTATGGATACAGCGCATGCATGAG
1 GCTATGGATACAACGCATGCATGAG
1321574 G
1 G
1321575 GAGCAGATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (25 bp):
GCTATGGATACAACGCATGCATGAG
Found at i:1321724 original size:19 final size:19
Alignment explanation
Indices: 1321700--1321757 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
1321690 GTGCATGGCC
1321700 CATGCACAGCTCCCGCATG
1 CATGCACAGCTCCCGCATG
*
1321719 CATGCATAGCT--CG---G
1 CATGCACAGCTCCCGCATG
*
1321733 CATGCACAGCTCCCACATG
1 CATGCACAGCTCCCGCATG
1321752 CATGCA
1 CATGCA
1321758 TCCACTCCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
14 11 0.35
16 1 0.03
17 2 0.06
19 17 0.55
ACGTcount: A:0.24, C:0.38, G:0.21, T:0.17
Consensus pattern (19 bp):
CATGCACAGCTCCCGCATG
Found at i:1321805 original size:29 final size:29
Alignment explanation
Indices: 1321762--1321860 Score: 162
Period size: 29 Copynumber: 3.4 Consensus size: 29
1321752 CATGCATCCA
1321762 CTCCTTGGTCACCCGGAGTGCATGGTGAC
1 CTCCTTGGTCACCCGGAGTGCATGGTGAC
* *
1321791 CTTCTTGGTCTCCCGGAGTGCATGGTGAC
1 CTCCTTGGTCACCCGGAGTGCATGGTGAC
* *
1321820 CTCCTTGGTCGCCCGGAGTGCATGGCGAC
1 CTCCTTGGTCACCCGGAGTGCATGGTGAC
1321849 CTCCTTGGTCAC
1 CTCCTTGGTCAC
1321861 TGTAGAATTC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.11, C:0.32, G:0.30, T:0.26
Consensus pattern (29 bp):
CTCCTTGGTCACCCGGAGTGCATGGTGAC
Found at i:1322103 original size:60 final size:59
Alignment explanation
Indices: 1322029--1322215 Score: 148
Period size: 60 Copynumber: 3.1 Consensus size: 59
1322019 ATTGTATATT
* * * **
1322029 TCCAAACTATAATCTTATTTTAAATT-GATCCTTAACCTTTTGAATATT-TCAATTTCATC
1 TCCAAATTATAATCTCATTCTAAATTAG-TCCTTAAAATTTTGAATATTCT-AATTTCATC
*
1322088 TCCAAATTATGAATCTCATTCTAAATTAGTCTTTAAAATTTTGAATATTCTAATTTCATC
1 TCCAAATTAT-AATCTCATTCTAAATTAGTCCTTAAAATTTTGAATATTCTAATTTCATC
* ** * ** * * *
1322148 -CCTAAATTGTGACCCTC-TTACTAAATTAGACCCCAAACTTTTGAATATTCCAATTTTATC
1 TCC-AAATTAT-AATCTCATT-CTAAATTAGTCCTTAAAATTTTGAATATTCTAATTTCATC
*
1322208 CCCAAATT
1 TCCAAATT
1322216 CATCCAAATA
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
59 13 0.12
60 89 0.84
61 4 0.04
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (59 bp):
TCCAAATTATAATCTCATTCTAAATTAGTCCTTAAAATTTTGAATATTCTAATTTCATC
Found at i:1328537 original size:30 final size:31
Alignment explanation
Indices: 1328489--1328547 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
1328479 ATTTGTATCC
* *
1328489 GAATTTAATCAAATTTTCACTTT-GTTCCGT
1 GAATTTAATCAAAATTTCAATTTAGTTCCGT
* *
1328519 GAATTTAGTTAAAATTTCAATTTAGTTCC
1 GAATTTAATCAAAATTTCAATTTAGTTCC
1328548 CAAAAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.46
Consensus pattern (31 bp):
GAATTTAATCAAAATTTCAATTTAGTTCCGT
Found at i:1337086 original size:27 final size:27
Alignment explanation
Indices: 1337053--1337118 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
1337043 TAAATCAGGT
1337053 TCGGGTCGGGTTTTTTAAATGTGATGA
1 TCGGGTCGGGTTTTTTAAATGTGATGA
* * * *
1337080 TTGGGTCAGATTTTTTAAATGTGATGG
1 TCGGGTCGGGTTTTTTAAATGTGATGA
1337107 TCGGGTCGGGTT
1 TCGGGTCGGGTT
1337119 CTGATTTAGG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.17, C:0.08, G:0.35, T:0.41
Consensus pattern (27 bp):
TCGGGTCGGGTTTTTTAAATGTGATGA
Found at i:1337261 original size:22 final size:22
Alignment explanation
Indices: 1337234--1337284 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
1337224 TAAGTCACTA
1337234 TTTTATTGAA-ACAAAATAATAT
1 TTTTATTGAATA-AAAATAATAT
*
1337256 TTTTATTGAATAAAAATTATAT
1 TTTTATTGAATAAAAATAATAT
1337278 TTTTATT
1 TTTTATT
1337285 ATTTCGGGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (22 bp):
TTTTATTGAATAAAAATAATAT
Found at i:1337787 original size:3 final size:3
Alignment explanation
Indices: 1337781--1337814 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
1337771 GAGGAGGAAA
1337781 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1337815 GTCAAAGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:1341904 original size:38 final size:38
Alignment explanation
Indices: 1341857--1341933 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
1341847 TTTAGATTTA
1341857 TGAGGATAATAAATATTTTTACGAGACTATACCCGATT
1 TGAGGATAATAAATATTTTTACGAGACTATACCCGATT
1341895 TGAGGATAATAAATATTTTTACGAGACTATACCCGATT
1 TGAGGATAATAAATATTTTTACGAGACTATACCCGATT
1341933 T
1 T
1341934 TCTTAATACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (38 bp):
TGAGGATAATAAATATTTTTACGAGACTATACCCGATT
Found at i:1349638 original size:13 final size:13
Alignment explanation
Indices: 1349620--1349646 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1349610 TTACAGACGC
1349620 GCATATGAAGACT
1 GCATATGAAGACT
1349633 GCATATGAAGACT
1 GCATATGAAGACT
1349646 G
1 G
1349647 TTCAACTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (13 bp):
GCATATGAAGACT
Found at i:1352390 original size:39 final size:39
Alignment explanation
Indices: 1352322--1352409 Score: 140
Period size: 39 Copynumber: 2.3 Consensus size: 39
1352312 ACTTGTAAAA
* *
1352322 CCTTACCGCAGGCTCCTCGGCTTTATGCTCAGGGTAAGT
1 CCTTACCGCAGGCTCCTCGACTTTATGCTCAAGGTAAGT
* *
1352361 CCTTACCGCAGGCTTCTCGACTTTGTGCTCAAGGTAAGT
1 CCTTACCGCAGGCTCCTCGACTTTATGCTCAAGGTAAGT
1352400 CCTTACCGCA
1 CCTTACCGCA
1352410 TGTCCTTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.17, C:0.32, G:0.23, T:0.28
Consensus pattern (39 bp):
CCTTACCGCAGGCTCCTCGACTTTATGCTCAAGGTAAGT
Found at i:1356879 original size:23 final size:21
Alignment explanation
Indices: 1356848--1356893 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1356838 ACAAAATGTA
*
1356848 TAATTATATTATATATAATATAT
1 TAATAATATT-TAT-TAATATAT
*
1356871 TAATAATATTTGTTAATATAT
1 TAATAATATTTATTAATATAT
1356892 TA
1 TA
1356894 TCATATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 2 0.10
23 9 0.43
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
TAATAATATTTATTAATATAT
Found at i:1358347 original size:51 final size:51
Alignment explanation
Indices: 1358116--1358347 Score: 270
Period size: 51 Copynumber: 4.5 Consensus size: 51
1358106 AATATAACAT
* * * * **
1358116 TTAACACATATTTATATCGGTGTAAGTTAATAAAATAAACAAGTGTAATAC
1 TTAACACATACTTACACCGGTGTAAGTAAATAAAATAAACAAGTGTAGCAC
* ** * *
1358167 TTAACACATACTTACACCGATGTAAGTGTATAAAACAAATAAGTGTAGCAC
1 TTAACACATACTTACACCGGTGTAAGTAAATAAAATAAACAAGTGTAGCAC
* * *
1358218 TTAACACATAC-TACACCGGTATAAGTGAATAAAATAAAAAAAGTGTAGCAC
1 TTAACACATACTTACACCGGTGTAAGTAAATAAAAT-AAACAAGTGTAGCAC
* *
1358269 TTAACACATACTTACAACGGTGCAAGTAAATAAAATAAA-AAGATGTAGCAC
1 TTAACACATACTTACACCGGTGTAAGTAAATAAAATAAACAAG-TGTAGCAC
* *
1358320 TTAACACATACTTATACCGATGTAAGTA
1 TTAACACATACTTACACCGGTGTAAGTA
1358348 TGTACATCTC
Statistics
Matches: 155, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
50 23 0.15
51 112 0.72
52 20 0.13
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (51 bp):
TTAACACATACTTACACCGGTGTAAGTAAATAAAATAAACAAGTGTAGCAC
Found at i:1363791 original size:23 final size:23
Alignment explanation
Indices: 1363755--1363799 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
1363745 TAATAATAAT
* *
1363755 TATGTCATTGTGACATGTTTATC
1 TATGTCATTATGACACGTTTATC
*
1363778 TATGTCTTTATGACACGTTTAT
1 TATGTCATTATGACACGTTTAT
1363800 TTCTACATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.49
Consensus pattern (23 bp):
TATGTCATTATGACACGTTTATC
Found at i:1366518 original size:3 final size:3
Alignment explanation
Indices: 1366489--1366544 Score: 53
Period size: 3 Copynumber: 18.3 Consensus size: 3
1366479 AAGCCTACAA
* *
1366489 AAT AAT AA- AAT AAA AAT -AT ATT AAT AAT AAT AAT AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
1366533 AAAT AAAT AAT A
1 -AAT -AAT AAT A
1366545 TAGTAAAATG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 4 0.09
3 31 0.67
4 11 0.24
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:1367035 original size:84 final size:83
Alignment explanation
Indices: 1366896--1367985 Score: 726
Period size: 84 Copynumber: 13.1 Consensus size: 83
1366886 CTGAATGGAA
* * *
1366896 TCGAACTCGAAGGT-TTTG--G-CAGATAACCCTTCTTGCCTTGAGCTATGCTACAAATGATGGT
1 TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGAT-GT
*
1366957 TACTTTGAGTTGAGT-TGAG
65 TACTTTGAGCTGAGTGT-AG
* * *
1366976 TCGAACTCGAAGGTCTTTGTTGATAGATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGTT
1 TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTT
* *** *
1367041 CCCTCAAAGCTGAGTGTAA
66 -ACTTTGAGCTGAGTGTAG
* * * * *
1367060 TCGAACTC-AAGGGTCTTTG--G-CAGATAACCCTTCTCGACTTGAGCTATACTACAAATGATG-
1 TCGAACTCGAA-GGTCTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT
*
1367120 TACATTTGAGCTGAGCGTAG
65 TAC-TTTGAGCTGAGTGTAG
* * * * * * *
1367140 TCGAACTCGAAGGTCTTTGATTGGCATATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATAT
1 TCGAACTCGAAGGTCTTTG-TTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT
* *
1367205 GT-CTTGGAGCTGAGCGTAG
65 -TACTTTGAGCTGAGTGTAG
* * * * * *
1367224 TCGAACTCAAAGGTCTTTTGGTCACATATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGT
1 TCGAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT
** * * *
1367289 GCCCTCGAAGCTGAGTGTAA
65 TACTTTG-AGCTGAGTGTAG
* * * *
1367309 TCGAACTCGAGGGTCTTTTTTGACAGATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGTG
1 TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT-
** *** *
1367374 CCCTCAAAGCTGAGTGTAA
65 TACTTTGAGCTGAGTGTAG
* * * * * * * *
1367393 TCAAACTCGAGGGT-TTT-TTG-TAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT-
* **
1367455 T-CTTGGAGCTGAGCATAG
65 TACTTTGAGCTGAGTGTAG
* * * * * * *
1367473 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACTCTTCTTGACTTAAGTTATGCTGCAAATTATAT
1 TCGAACTCGAAGGTCTTT-GTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT
** * * *
1367538 GCCTTGGAGCTAAGCGTAG
65 TACTTTGAGCTGAGTGTAG
* * * * * **
1367557 TCGAACTCGAAAGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGTTATAAATGATG-
1 TCGAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT
* *
1367621 TGCTTTCGAAGCTGAGTGTAA
65 TACTTT-G-AGCTGAGTGTAG
* * * * * * * *
1367642 TCAAACTCGAGGGTCTTTG--G-CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTT
* * * * *
1367704 CCCTGGAGCTGAGCGTAA
66 ACTTTGAGCTGAGTGTAG
* * * * * * * * * *
1367722 TCGAACTCGAAGGACTTTGGTTGGCAGATAACCTTTTTCGACTTAAGTTATGATGTAAATGATAT
1 TCGAACTCGAAGGTCTTT-GTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT
** * *
1367787 GCCTTGGAGCTGAGCGTAG
65 TACTTTGAGCTGAGTGTAG
* * * *
1367806 TCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGT
1 TCGAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT
** * * *
1367871 GCCCTCGAAGCTGAGTGTAA
65 TACTTTG-AGCTGAGTGTAG
* * * * *
1367891 TCGAACTCGAGGGTCTTCGGTTGGA-AGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATG
1 TCGAACTCGAAGGTCTT-TGTT-GACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATG
** * *
1367955 TGCCTTGGAGCTGAGCGTAG
64 TTACTTTGAGCTGAGTGTAG
*
1367975 TCAAACTCGAA
1 TCGAACTCGAA
1367986 TGCCTTTGGT
Statistics
Matches: 805, Mismatches: 169, Indels: 68
0.77 0.16 0.07
Matches are distributed among these distances:
79 1 0.00
80 91 0.11
81 108 0.13
82 6 0.01
83 17 0.02
84 456 0.57
85 124 0.15
86 2 0.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (83 bp):
TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTT
ACTTTGAGCTGAGTGTAG
Found at i:1367426 original size:249 final size:250
Alignment explanation
Indices: 1366877--1367995 Score: 1188
Period size: 249 Copynumber: 4.5 Consensus size: 250
1366867 CAGTTGATAC
* * * * * * *
1366877 GCCCTCG-AGCTGAATGGAATCGAACTCGAAGG--TTTTGGCAGATAACCCTTCTTGCCTTGAGC
1 GCCCTCGAAGCTGAGTGTAATCAAACTCGAGGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGC
* ** * * * *
1366939 TATGCTACAAATGATGGTTACTTTGAGTTGAG-TTGAGTCGAACTCGAAGGTCTTT-GTTGATAG
66 TATGCTGCAAATGAT-GTGCCTTGGAGCTGAGCGT-AGTCGAACTCGAAGGTCTTTGGTTGACAG
* * * * * * *
1367002 ATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGTTCCCTCAAAGCTGAGTGTAATCGAACT
129 ATAACCCTTCTAGACTTAAGTTATGCTGTAAATGAT-ATGCCTCGAAGCTGAGCGTAATCGAACT
* * * * * *
1367067 C-AAGGGTC-TTTGG---CAGATAACCCTTCTCGACTTGAGCTATACTACAAATGATGT
193 CGAA-GGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTATAAATGATGT
* ** * * * * * *
1367121 ACATTTG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGATTGGCATATAACCCTTCTCGACTTA
1 GCCCTCGAAGCTGAGTGTAATCAAACTCGAGGGTC-TT--TTGGCAGATAACCCTTCTCGACTTA
* * * * * *
1367185 AGTTATGTTGCAAATGATATGTCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGG-TCAC
63 AGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGAC
* * * * * *
1367249 ATATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAA
127 AGATAACCCTTCTAGACTTAAGTTATGCTGTAAATGATATG-CCTCGAAGCTGAGCGTAATCGAA
* * * * **
1367314 CTCGAGGGTCTTTT-TTGACAGATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGT
191 CTCGAAGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTATAAATGATGT
* * * *
1367373 GCCCTCAAAGCTGAGTGTAATCAAACTCGAGGGT-TTTTTGTAGATAGCCCTTCTCGACTTAAGC
1 GCCCTCGAAGCTGAGTGTAATCAAACTCGAGGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGC
* * *
1367437 TATGCTGCAAATGATGTGTCTTGGAGCTGAGCATAGTCGAACTCGAAGGTCTTTGGTTGGCAGAT
66 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGAT
* * * * * * * *
1367502 AACTCTTCTTGACTTAAGTTATGCTGCAAATTATATGCCTTGGAGCTAAGCGTAGTCGAACTCGA
131 AACCCTTCTAGACTTAAGTTATGCTGTAAATGATATGCCTCGAAGCTGAGCGTAATCGAACTCGA
* *
1367567 AAGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGTTATAAATGATGT
196 AGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTATAAATGATGT
** *
1367622 GCTTTCGAAGCTGAGTGTAATCAAACTCGAGGGTC-TTTGGCAGATAGCCCTTCTCGACTTAAGC
1 GCCCTCGAAGCTGAGTGTAATCAAACTCGAGGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGC
* * * *
1367686 TATGCTGCAAATGATGTGCCCTGGAGCTGAGCGTAATCGAACTCGAAGGACTTTGGTTGGCAGAT
66 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGAT
* * * * * * *
1367751 AACCTTTTTCGACTTAAGTTATGATGTAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGA
131 AACCCTTCTAGACTTAAGTTATGCTGTAAATGATATGCCTCGAAGCTGAGCGTAATCGAACTCGA
*
1367816 AGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGT
196 AGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTATAAATGATGT
* * *
1367871 GCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTCGGTTGGAAGATAACCCTTCTTGACTTA
1 GCCCTCGAAGCTGAGTGTAATCAAACTCGAGGGTCTT---TTGGCAGATAACCCTTCTCGACTTA
* * * *
1367936 AGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAATGCCTTTGGT
63 AGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGT
1367996 GGGCACGATT
Statistics
Matches: 739, Mismatches: 114, Indels: 35
0.83 0.13 0.04
Matches are distributed among these distances:
244 24 0.03
247 2 0.00
248 63 0.09
249 508 0.69
250 6 0.01
251 2 0.00
252 36 0.05
253 98 0.13
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (250 bp):
GCCCTCGAAGCTGAGTGTAATCAAACTCGAGGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGC
TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGAT
AACCCTTCTAGACTTAAGTTATGCTGTAAATGATATGCCTCGAAGCTGAGCGTAATCGAACTCGA
AGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTATAAATGATGT
Found at i:1367524 original size:333 final size:333
Alignment explanation
Indices: 1366976--1367900 Score: 1162
Period size: 333 Copynumber: 2.8 Consensus size: 333
1366966 TTGAGTTGAG
* * * *
1366976 TCGAACTCGAAGGTCTTTGTTGATAGATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGTT
1 TCGAACTCGAGGGTCTTTTTTGACAGATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGTG
* * *
1367041 CCCTCAAAGCTGAGTGTAATCGAACTCAAGGGTCTTTGGCAGATAACCCTTCTCGACTTGAGCTA
66 CCCTCAAAGCTGAGTGTAATCGAACTCGAGGGTTTTTGGCAGATAACCCTTCTCGACTTAAGCTA
* * * *
1367106 TACTACAAATGATGT-ACATTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGATTGGCATATA
131 TGCTGCAAATGATGTGAC-TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGATTGGCAGATA
* * *
1367170 ACCCTTCTCGACTTAAGTTATGTTGCAAATGATATGTCTTGGAGCTGAGCGTAGTCGAACTC-AA
195 ACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTAAGCGTAGTCGAACTCGAA
* * *
1367234 AGGTCTTTTGGTCACATATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAG
260 A-GTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGTTATAAATGATGTGCCCTCGAAG
1367299 CTGAGTGTAA
324 CTGAGTGTAA
1367309 TCGAACTCGAGGGTCTTTTTTGACAGATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGTG
1 TCGAACTCGAGGGTCTTTTTTGACAGATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGTG
* * * *
1367374 CCCTCAAAGCTGAGTGTAATCAAACTCGAGGGTTTTTTGTAGATAGCCCTTCTCGACTTAAGCTA
66 CCCTCAAAGCTGAGTGTAATCGAACTCGAGGGTTTTTGGCAGATAACCCTTCTCGACTTAAGCTA
* * *
1367439 TGCTGCAAATGATGTGTCTTGGAGCTGAGCATAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAA
131 TGCTGCAAATGATGTGACTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGATTGGCAGATAA
* * *
1367504 CTCTTCTTGACTTAAGTTATGCTGCAAATTATATGCCTTGGAGCTAAGCGTAGTCGAACTCGAAA
196 CCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTAAGCGTAGTCGAACTCGAAA
**
1367569 GTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGTTATAAATGATGTGCTTTCGAAGCT
261 GTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGTTATAAATGATGTGCCCTCGAAGCT
1367634 GAGTGTAA
326 GAGTGTAA
* * * * * * * * *
1367642 TCAAACTCGAGGGTC---TTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TCGAACTCGAGGGTCTTTTTTGACAGATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGTG
** * * * *
1367704 CCCT-GGAGCTGAGCGTAATCGAACTCGAAGGACTTTGGTTGGCAGATAACCTTTTTCGACTTAA
66 CCCTCAAAGCTGAGTGTAATCGAACTCG-AGG-GTTT--TTGGCAGATAACCCTTCTCGACTTAA
* * * * * * **
1367768 GTTATGATGTAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTG-GTCACA
127 GCTATGCTGCAAATGATGTGACTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGATTGGCA
* * * * * * * * * * *
1367832 GATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAAC
191 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATG-CCTTGGAGCTAAGCGTAGTCGAAC
1367897 TCGA
255 TCGA
1367901 GGGTCTTCGG
Statistics
Matches: 514, Mismatches: 70, Indels: 15
0.86 0.12 0.03
Matches are distributed among these distances:
329 19 0.04
330 46 0.09
331 3 0.01
333 415 0.81
334 31 0.06
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (333 bp):
TCGAACTCGAGGGTCTTTTTTGACAGATAACCCTTCTAGCCTTGAGTTATGCCGTAAATGATGTG
CCCTCAAAGCTGAGTGTAATCGAACTCGAGGGTTTTTGGCAGATAACCCTTCTCGACTTAAGCTA
TGCTGCAAATGATGTGACTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGATTGGCAGATAA
CCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTAAGCGTAGTCGAACTCGAAA
GTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGTTATAAATGATGTGCCCTCGAAGCT
GAGTGTAA
Found at i:1367969 original size:333 final size:328
Alignment explanation
Indices: 1366896--1367984 Score: 1158
Period size: 333 Copynumber: 3.3 Consensus size: 328
1366886 CTGAATGGAA
* *
1366896 TCGAACTCGAAGG--TTTTGG--CAGATAACCCTTCTTGCCTTGAGCTATGCTACAAATGATGGT
1 TCGAACTCGAAGGTCTTTTGGCACAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGAT-G-
* * * * * * *
1366957 TACTTTG-AGTTGAGT-TGAGTCGAACTCGAAGGTCTTTGTTGATAGATAACCCTTCTAGCCTTG
64 TGCCTTGAAGCTGAGTGT-AATCAAACTCGAGGGTCTTTG--G-CAGATAACCCTTCTAGCCTTG
* *
1367020 AGTTATGCCGTAAATGATGTTCCCTCAAAGCTGAGTGTAATCGAACTC-AAGGGTCTTTGGCAGA
125 AGTTATGCCGTAAATGATGTGCCCTCAAAGCTGAGTGTAATCGAACTCGAAGGGTTTTTGGCAGA
* * * * *
1367084 TAACCCTTCTCGACTTGAGCTAT-ACTACAAATGATGTACATTTGAGCTGAGCGTAGTCGAACTC
190 TAACCCTTCTCGACTTAAGCTATGA-TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
* * * * *
1367148 GAAGGTCTTTGATTGGCATATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATATGTCTTGGA
254 GAAGGTCTTTG-GTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCTTGGA
1367213 GCTGAGCGTAG
318 GCTGAGCGTAG
* * * **
1367224 TCGAACTCAAAGGTCTTTTGGTCACATATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGT
1 TCGAACTCGAAGGTCTTTTGG-CACAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGT
* * *
1367289 GCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTTTTGACAGATAACCCTTCTAGCCTTGA
65 G-CCTTGAAGCTGAGTGTAATCAAACTCGAGGGTC---TTTGGCAGATAACCCTTCTAGCCTTGA
* * *
1367354 GTTATGCCGTAAATGATGTGCCCTCAAAGCTGAGTGTAATCAAACTCG-AGGGTTTTTTGTAGAT
126 GTTATGCCGTAAATGATGTGCCCTCAAAGCTGAGTGTAATCGAACTCGAAGGGTTTTTGGCAGAT
* * * *
1367418 AGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGTCTTGGAGCTGAGCATAGTCGAACTCGA
191 AACCCTTCTCGACTTAAGCTATGATGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGA
* * *
1367483 AGGTCTTTGGTTGGCAGATAACTCTTCTTGACTTAAGTTATGCTGCAAATTATATGCCTTGGAGC
256 AGGTCTTTGG-TGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGC
*
1367548 TAAGCGTAG
320 TGAGCGTAG
* * * *
1367557 TCGAACTCGAAAGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGTTATAAATGATGT
1 TCGAACTCGAAGGTCTTTTGG-CACAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGT
* * * * * *
1367622 GCTTTCGAAGCTGAGTGTAATCAAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCT
65 GCCTT-GAAGCTGAGTGTAATCAAACTCGAGGGTCTTTGGCAGATAACCCTTCTAGCCTTGAGTT
* * ** * *
1367687 ATGCTGCAAATGATGTGCCCT-GGAGCTGAGCGTAATCGAACTCGAAGGACTTTGGTTGGCAGAT
129 ATGCCGTAAATGATGTGCCCTCAAAGCTGAGTGTAATCGAACTCGAAGG-GTTT--TTGGCAGAT
* * * * *
1367751 AACCTTTTTCGACTTAAGTTATGATGTAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGA
191 AACCCTTCTCGACTTAAGCTATGATGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGA
** * * * * * * *
1367816 AGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAG
256 AGGTC-TTTGGTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATG-CCTTGGAG
* *
1367881 CTGAGTGTAA
319 CTGAGCGTAG
* * * * *
1367891 TCGAACTCGAGGGTCTTCGGTTGG-A-AGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGAT
1 TCGAACTCGAAGGTCTT---TTGGCACAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGAT
* * *
1367954 GTGCCTTGGAGCTGAGCGTAGTCAAACTCGA
63 GTGCCTTGAAGCTGAGTGTAATCAAACTCGA
1367985 ATGCCTTTGG
Statistics
Matches: 640, Mismatches: 97, Indels: 43
0.82 0.12 0.06
Matches are distributed among these distances:
328 12 0.02
329 19 0.03
330 52 0.08
331 4 0.01
332 6 0.01
333 467 0.73
334 71 0.11
335 1 0.00
336 4 0.01
337 4 0.01
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (328 bp):
TCGAACTCGAAGGTCTTTTGGCACAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGTG
CCTTGAAGCTGAGTGTAATCAAACTCGAGGGTCTTTGGCAGATAACCCTTCTAGCCTTGAGTTAT
GCCGTAAATGATGTGCCCTCAAAGCTGAGTGTAATCGAACTCGAAGGGTTTTTGGCAGATAACCC
TTCTCGACTTAAGCTATGATGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
TTTGGTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCG
TAG
Found at i:1368419 original size:110 final size:110
Alignment explanation
Indices: 1368119--1369086 Score: 1426
Period size: 110 Copynumber: 8.8 Consensus size: 110
1368109 GTTTTGAGGG
* *
1368119 CAATATCCTTCGCCGTGAAGTTGAAATTGACTC----TGAAACTGGAAAGGTT-TTTGTTGACAG
1 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACT-GAAAAGTTGTTTGTTGACAG
* * * * * *
1368179 CCAGCCACCCCTTCGCTTTGAAGTTGAGCTTGTGTTATCTCGAATC
65 TCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
* * *
1368225 CAATATCCTTCGTTGTGAAGTTGAAATAGACTCT-AATGAAACTGAAAAGTTGTTTGTTGATAGT
1 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
* *
1368289 CAGTCGCCCCTTCACTGTGAAGTTGAGCTTTTGTTGTCTCGAGTC
66 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
* *
1368334 CAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTAAAAAGTTGTTTGTTGACAGT
1 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
*
1368399 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTATCTCGAGTC
66 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
* * * * * *
1368444 CAATATTCTTCACTGTGAAATTAAAATTGACTCTGATTGAAACTGAAAAGTTGTTTGTTGATAGT
1 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
* * * *
1368509 CAGTAGCCCCTTCGCTGTGAAGTTGAGATTATGTTGTCTCAAGTC
66 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
* * * * *
1368554 CAATATCATTCGCTGTGAAGTTGAAGTTAACTTTGAATGAAACTGAAAAGTTGTTTGTTGATAGT
1 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
* * *
1368619 CAGTCGCCCATTCGTTGTGAAGTTGAGCTTGTGTTGTCTTGAGTC
66 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
* * * * * *
1368664 CAATATCATTTGCTTTGAAATTAAAATTGACTCTGAATGAAACTGAAAAGTTATTTGTTGACAGT
1 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
* *
1368729 CAGTCACCCCTTCTCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
66 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
*
1368774 CAGTATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
1 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
*
1368839 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCCCGAGTC
66 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
*
1368884 CAATATCCTTCGCTGTAAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
1 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
* *
1368949 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTTGATTC
66 CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
* * * *
1368994 CAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATAAAACTGAAAAGCTGTTTGTTGACCGT
1 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
1369059 CAGTCGCCCCTTCGCTGTGAAGTTGAGC
66 CAGTCGCCCCTTCGCTGTGAAGTTGAGC
1369087 AACCACCATC
Statistics
Matches: 773, Mismatches: 84, Indels: 6
0.90 0.10 0.01
Matches are distributed among these distances:
106 30 0.04
108 7 0.01
109 86 0.11
110 650 0.84
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (110 bp):
CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGT
CAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTC
Found at i:1372830 original size:9 final size:9
Alignment explanation
Indices: 1372811--1372839 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
1372801 TAAAAAATAT
1372811 TAATA-TAA
1 TAATATTAA
1372819 TAATATTAA
1 TAATATTAA
1372828 TAATATTAA
1 TAATATTAA
1372837 TAA
1 TAA
1372840 AAAATGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
TAATATTAA
Found at i:1372865 original size:32 final size:32
Alignment explanation
Indices: 1372829--1372898 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
1372819 TAATATTAAT
*
1372829 AATATTAATAAAA-AATG-AAAAATAAATAAA
1 AATATTAATAAAACAATGTAAAAAGAAATAAA
1372859 TAA-A-TATATAAAACAATGTAAAAAGAAATAAA
1 -AATATTA-ATAAAACAATGTAAAAAGAAATAAA
1372891 AATATTAA
1 AATATTAA
1372899 AATTAGGAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
29 2 0.06
30 7 0.21
31 8 0.24
32 14 0.42
33 2 0.06
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (32 bp):
AATATTAATAAAACAATGTAAAAAGAAATAAA
Found at i:1373351 original size:3 final size:3
Alignment explanation
Indices: 1373328--1373392 Score: 80
Period size: 3 Copynumber: 21.3 Consensus size: 3
1373318 AGGCCTGTAA
*
1373328 AAT AAT AA- AAT AAA AAT -AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1373374 AAT AAAT AAAT ATAT AAT A
1 AAT -AAT -AAT A-AT AAT A
1373393 TAGTAAAATG
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
2 4 0.07
3 42 0.75
4 10 0.18
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1379530 original size:3 final size:3
Alignment explanation
Indices: 1379522--1379567 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
1379512 TATCATTTAA
* *
1379522 TAT TAT TAT TAT TAT TAT TAT TAC TAT TAG TATT TATT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TAT TAT TA
1379568 CAGGTTTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 32 0.84
4 6 0.16
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:1387193 original size:13 final size:13
Alignment explanation
Indices: 1387177--1387244 Score: 55
Period size: 15 Copynumber: 4.7 Consensus size: 13
1387167 AGATAAAAAT
1387177 AAAAAAATAGAAGA
1 AAAAAAATAG-AGA
1387191 AAAAAAATAGAGAA
1 AAAAAAATAGAG-A
* *
1387205 AACAACAAAAAGAAA
1 AA-AA-AAATAGAGA
1387220 AATAAAAATAAGAGA
1 AA-AAAAAT-AGAGA
1387235 AGAAAAAATA
1 A-AAAAAATA
1387245 AAAGAAAAGA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
13 2 0.05
14 17 0.39
15 18 0.41
16 7 0.16
ACGTcount: A:0.78, C:0.03, G:0.12, T:0.07
Consensus pattern (13 bp):
AAAAAAATAGAGA
Found at i:1387194 original size:20 final size:19
Alignment explanation
Indices: 1387159--1387259 Score: 69
Period size: 22 Copynumber: 4.7 Consensus size: 19
1387149 AAAAGAGAAG
1387159 AAAAAAAG-AGATAAAAATA
1 AAAAAAAGAAGA-AAAAATA
1387178 AAAAAATAGAAGAAAAAAAATA
1 AAAAAA-AGAAG--AAAAAATA
* *
1387200 GAGAAAACAACAAAAAGAAAAATA
1 -A-AAAA-AA-GAAGA-AAAAATA
1387224 AAAATAAGAGAAGAAAAAATA
1 AAAA-AA-AGAAGAAAAAATA
1387245 AAAGAAAAGAAGAAA
1 AAA-AAAAGAAGAAA
1387260 TAGAATAAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 23
0.71 0.04 0.25
Matches are distributed among these distances:
19 6 0.09
20 10 0.15
21 14 0.21
22 15 0.23
23 6 0.09
24 12 0.18
25 3 0.05
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.07
Consensus pattern (19 bp):
AAAAAAAGAAGAAAAAATA
Found at i:1387203 original size:34 final size:31
Alignment explanation
Indices: 1387149--1387259 Score: 100
Period size: 34 Copynumber: 3.4 Consensus size: 31
1387139 AAAAAAAGAT
1387149 AAAAG-AGAAGAAAAAAAGAGATAAAAATAAAA
1 AAAAGAAGAA-AAAAAAAGAGA-AAAAATAAAA
*
1387181 AAATAGAAGAAAAAAAATAGAGAAAACAACAAAA
1 AAA-AGAAGAAAAAAAA-AGAGAAAA-AATAAAA
* *
1387215 AGAAA-AATAAAAATAAGAGAAGAAAAAATAAAA
1 A-AAAGAAGAAAAA-AAAAG-AGAAAAAATAAAA
1387248 GAAAAGAAGAAA
1 -AAAAGAAGAAA
1387260 TAGAATAAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 16
0.76 0.06 0.19
Matches are distributed among these distances:
32 3 0.05
33 29 0.45
34 31 0.48
35 2 0.03
ACGTcount: A:0.77, C:0.02, G:0.14, T:0.06
Consensus pattern (31 bp):
AAAAGAAGAAAAAAAAAGAGAAAAAATAAAA
Found at i:1387248 original size:32 final size:30
Alignment explanation
Indices: 1387139--1387261 Score: 90
Period size: 32 Copynumber: 3.9 Consensus size: 30
1387129 TCATATTCAT
* *
1387139 AAAAAAAGATAAAAGAGAAGAAAAAAA-GAGAT
1 AAAAAAA-ATAAAAGA-AA-AAAAAAATAAGAG
*
1387171 AAAAATAAAAAAATAGAAGAAAAAAAAT-AGAG
1 AAAAA-AAATAAA-AGAA-AAAAAAAATAAGAG
*
1387203 AAAACAACA-AAAAGAAAAATAAAAATAAGAG
1 AAAA-AAAATAAAAGAAAAA-AAAAATAAGAG
*
1387234 AAGAAAAAATAAAAGAAAAGAAGAAATA
1 AA-AAAAAATAAAAGAAAA-AAAAAATA
1387262 GAATAAATCA
Statistics
Matches: 76, Mismatches: 5, Indels: 20
0.75 0.05 0.20
Matches are distributed among these distances:
29 3 0.04
30 10 0.13
31 12 0.16
32 43 0.57
33 8 0.11
ACGTcount: A:0.77, C:0.02, G:0.14, T:0.07
Consensus pattern (30 bp):
AAAAAAAATAAAAGAAAAAAAAAATAAGAG
Found at i:1387760 original size:18 final size:20
Alignment explanation
Indices: 1387722--1387760 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
1387712 TAAGTATTAA
*
1387722 TGAATTTTAAGATTTTATAT
1 TGAATTTTAAGATTATATAT
1387742 TGAATTTT-A-ATTATATAT
1 TGAATTTTAAGATTATATAT
1387760 T
1 T
1387761 TGATTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 1 0.06
20 8 0.44
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
TGAATTTTAAGATTATATAT
Found at i:1393868 original size:21 final size:21
Alignment explanation
Indices: 1393844--1393897 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 21
1393834 GGAATTAATA
**
1393844 CCCCTTGTAGGGGAACCGATT
1 CCCCTTGTAGGGGAACAAATT
* *
1393865 CCCCTTTGAATGGGAACAAATT
1 CCCC-TTGTAGGGGAACAAATT
1393887 CCCCTT-TAGGG
1 CCCCTTGTAGGG
1393898 AATCGATACC
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
20 3 0.12
21 6 0.23
22 17 0.65
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (21 bp):
CCCCTTGTAGGGGAACAAATT
Found at i:1396150 original size:16 final size:16
Alignment explanation
Indices: 1396129--1396176 Score: 96
Period size: 16 Copynumber: 3.0 Consensus size: 16
1396119 AAAAGGGGGA
1396129 GAAGTGTTAGAGTAAG
1 GAAGTGTTAGAGTAAG
1396145 GAAGTGTTAGAGTAAG
1 GAAGTGTTAGAGTAAG
1396161 GAAGTGTTAGAGTAAG
1 GAAGTGTTAGAGTAAG
1396177 AGGGAGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.25
Consensus pattern (16 bp):
GAAGTGTTAGAGTAAG
Found at i:1396343 original size:18 final size:20
Alignment explanation
Indices: 1396305--1396343 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
1396295 TAAGTGTTAA
*
1396305 TGAATTTTAAGATTTTATAT
1 TGAATTTTAAGATTATATAT
1396325 TGAATTTT-A-ATTATATAT
1 TGAATTTTAAGATTATATAT
1396343 T
1 T
1396344 CGATTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 1 0.06
20 8 0.44
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
TGAATTTTAAGATTATATAT
Found at i:1399643 original size:254 final size:250
Alignment explanation
Indices: 1398992--1399690 Score: 877
Period size: 254 Copynumber: 2.7 Consensus size: 250
1398982 ACCATTAAGG
* * * *
1398992 TTTTTG-AAAATGAGAAAGCGATTTCCAAAGTTTCTCATTTTCATCTTTTCTGAAAATGAAATTT
1 TTTTTGAAAAATGAGAAAGTGA-TTCCAAAGTTTCTCA-TTTAATATTTTCAGAAAATGAAATTT
* * * *
1399056 TTGAGAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCTAAAATTGGTAAGT
64 TTGAAAAGTAAGAAAG-GATTTCCAAAGTTTCTTACCTAGTAAACTATTTC--CAA--GATAAAT
* * * *
1399121 CCTTTGGGCCATCAGTAAGTCTTTCAATCATGATGATTAAATCCTTCTGGTCATCTGTCAGTCTT
124 -CTTTCGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTT-TGGTCATCTGTCAGTATT
*
1399186 TCAAGCAAGATGATAAGTCCTTGGGGCTATCTATAAGACCTTCGGGCAGCATGTTTTCACATGA
187 TCAAGCAAGATGATAAGTCCTTAGGGCTATCTATAAGACCTTCGGGCAGCATGTTTTCACATGA
* * * * *
1399250 TTTTTGAAAAATAAGAAAATAATTCCAAAGTTTATCATTTAATATTTTCAGAAAATGAAATCTTT
1 TTTTTGAAAAATGAGAAAGTGATTCCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTTT
* ** * * *
1399315 GAAAAGTAA-AAA-AACATCCAAAGTTTCTTACCCAGTAAACTATTTCCAAAATTAGTAAGTCAT
66 GAAAAGTAAGAAAGGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAGA-TA--AA-TCTT
* *
1399378 TCGGACCATCAGTAAGTCTTTCGAGCATGATGATTAAATCATTTGAGTCATCTGTCAGTATTTCG
127 TCGG-CCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTG-GTCATCTGTCAGTATTTCA
* * * *
1399443 AGCAAGATGATAATTCCTTCATGTC-ATCTATAAGACCTTCGGGCAGGATGTTTTCACATGA
190 AGCAAGATGATAAGTCCTT-AGGGCTATCTATAAGACCTTCGGGCAGCATGTTTTCACATGA
1399504 TTTTTGAAAAATGAGAAAGTGATTCCCAAAGTTTCTCATTTAATATTTTCAGAAAATG-AATGTT
1 TTTTTGAAAAATGAGAAAGTGATT-CCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAAT-TT
1399568 TTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAGATAAATCTTT
64 TTGAAAAGTAAGAAAG-GATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAGATAAATCTTT
* * *
1399633 CAGGCCATCAGTAAGTCTTTCGAGCATGACGATTAAATCCTTCGGGTTATCTGTCAGT
128 C-GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTT-TGGTCATCTGTCAGT
1399691 CTCATTTGAG
Statistics
Matches: 381, Mismatches: 45, Indels: 34
0.83 0.10 0.07
Matches are distributed among these distances:
251 2 0.01
252 2 0.01
253 8 0.02
254 213 0.56
255 51 0.13
256 6 0.02
257 34 0.09
258 54 0.14
259 11 0.03
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (250 bp):
TTTTTGAAAAATGAGAAAGTGATTCCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTTT
GAAAAGTAAGAAAGGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAGATAAATCTTTCGG
CCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGTCATCTGTCAGTATTTCAAGCAAG
ATGATAAGTCCTTAGGGCTATCTATAAGACCTTCGGGCAGCATGTTTTCACATGA
Found at i:1404234 original size:22 final size:22
Alignment explanation
Indices: 1404191--1404234 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
1404181 TGGTGTCCAA
* * * *
1404191 ACAATTAATTAATCTCTTAAAC
1 ACAATAAATGAATATCTAAAAC
1404213 ACAATAAATGAATATCTAAAAC
1 ACAATAAATGAATATCTAAAAC
1404235 TTTTAGAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.16, G:0.02, T:0.30
Consensus pattern (22 bp):
ACAATAAATGAATATCTAAAAC
Found at i:1417276 original size:106 final size:106
Alignment explanation
Indices: 1417092--1418116 Score: 1518
Period size: 106 Copynumber: 9.6 Consensus size: 106
1417082 GCATTGTTCC
* * * ** *
1417092 GAGTCCAATATCCTCCG-TCGTGAAGTTAAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* * * *
1417156 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
1417198 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * * *
1417263 CCAGCCGTCCCTTCGTTTGTGAAGTTGAACTTGTGTTGTCTT
66 CCAGCGGTCCCTTCG-TCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
1417305 GAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T-GAAATTTTATTGTTTGTTG
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA----GTTGTTTGTTG
*
1417367 ACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
62 ACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1417412 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
1417477 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
1417518 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTTTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1417583 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1417624 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATCGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
1417689 CCAGCAGTCCATTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
1417730 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTTTGAAATTGAGAAGTTGTTTGTTGAGAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1417795 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
1417836 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAAATTGTTTATTGACA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGG-AAGTTGTTTGTTGACA
*
1417901 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
1417943 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTATTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1418008 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
1418049 GAGTCCAATTTTCTTCGCTGTGAAGTTGAAATAGACTCTGAATGAAATTGGAAAGTTGTTTGTTG
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC----TGAAATTGGGAAGTTGTTTGTTG
1418114 ACA
62 ACA
1418117 GACAACTTTT
Statistics
Matches: 847, Mismatches: 58, Indels: 24
0.91 0.06 0.03
Matches are distributed among these distances:
104 3 0.00
105 1 0.00
106 560 0.66
107 225 0.27
108 30 0.04
109 1 0.00
110 27 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:1424931 original size:83 final size:83
Alignment explanation
Indices: 1424834--1424991 Score: 255
Period size: 83 Copynumber: 1.9 Consensus size: 83
1424824 TGTATATATG
* * *
1424834 TTTAATATTTTAAATTTAAAAGATATTATTATTTGTTTAAATTTAGATATTAAAATA-TGTTTAG
1 TTTAATATTTTAAATTTAAAAGATAATATTATCTGTTTAAATTTAGATATTAAAAGAGT-TTTAG
*
1424898 TTGGAGTAAAACTCTCATA
65 TTAGAGTAAAACTCTCATA
*
1424917 TTTAATATTTTAAATTTAAAATATAATATTATCTGTTTAAATTTAGATATTAAAAGAGTTTTAGT
1 TTTAATATTTTAAATTTAAAAGATAATATTATCTGTTTAAATTTAGATATTAAAAGAGTTTTAGT
1424982 TAGAGTAAAA
66 TAGAGTAAAA
1424992 ATTCCCCTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
83 68 0.99
84 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.46
Consensus pattern (83 bp):
TTTAATATTTTAAATTTAAAAGATAATATTATCTGTTTAAATTTAGATATTAAAAGAGTTTTAGT
TAGAGTAAAACTCTCATA
Found at i:1426059 original size:14 final size:14
Alignment explanation
Indices: 1426040--1426086 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
1426030 CGTTCGTGAA
1426040 CGTTCGATTATGTT
1 CGTTCGATTATGTT
*
1426054 CGTTCGGTTATG-T
1 CGTTCGATTATGTT
1426067 --TT-G-TTATGTT
1 CGTTCGATTATGTT
1426077 CGTTCGATTA
1 CGTTCGATTA
1426087 GTCTTTTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 2 0.07
11 2 0.07
12 2 0.07
13 2 0.07
14 14 0.52
ACGTcount: A:0.13, C:0.13, G:0.23, T:0.51
Consensus pattern (14 bp):
CGTTCGATTATGTT
Found at i:1426075 original size:23 final size:22
Alignment explanation
Indices: 1426047--1426113 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 22
1426037 GAACGTTCGA
*
1426047 TTATGTTCGTTCGGTTATGTTT
1 TTATGTTCGTTCGATTATGTTT
1426069 GTTATGTTCGTTCGATTA-GTCTT
1 -TTATGTTCGTTCGATTATGT-TT
*
1426092 TTATGTTCATTC-ATTTATGTTT
1 TTATGTTCGTTCGA-TTATGTTT
1426114 AATTCAATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
21 1 0.03
22 18 0.46
23 20 0.51
ACGTcount: A:0.13, C:0.10, G:0.18, T:0.58
Consensus pattern (22 bp):
TTATGTTCGTTCGATTATGTTT
Found at i:1426695 original size:23 final size:23
Alignment explanation
Indices: 1426668--1426744 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
1426658 TGAATCATTT
1426668 AATATCTTTAAAAGATTGATCAA
1 AATATCTTTAAAAGATTGATCAA
* * *** *
1426691 AATAT-TTGATATCTTGTGAATCATTT
1 AATATCTTTAAAAGAT-TG-ATCA--A
1426717 AATATCTTTAAAAGATTGATCAA
1 AATATCTTTAAAAGATTGATCAA
1426740 AATAT
1 AATAT
1426745 TGATATCTTC
Statistics
Matches: 37, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
22 5 0.14
23 12 0.32
24 4 0.11
25 4 0.11
26 7 0.19
27 5 0.14
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (23 bp):
AATATCTTTAAAAGATTGATCAA
Found at i:1426727 original size:49 final size:48
Alignment explanation
Indices: 1426655--1426753 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 48
1426645 TAAATTAAAG
1426655 TTGTGAATCATTTAATATCTTTAAAAGATTGATCAAAATATTTGATATC
1 TTGTGAATCATTTAATATCTTTAAAAGATTGATCAAAATA-TTGATATC
1426704 TTGTGAATCATTTAATATCTTTAAAAGATTGATCAAAATATTGATATC
1 TTGTGAATCATTTAATATCTTTAAAAGATTGATCAAAATATTGATATC
1426752 TT
1 TT
1426754 CAAACATTTC
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 10 0.20
49 40 0.80
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.43
Consensus pattern (48 bp):
TTGTGAATCATTTAATATCTTTAAAAGATTGATCAAAATATTGATATC
Found at i:1426913 original size:20 final size:22
Alignment explanation
Indices: 1426874--1426916 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
1426864 TTATGTTTTA
1426874 TGTTCGTGTTCATTTATGTTCG
1 TGTTCGTGTTCATTTATGTTCG
*
1426896 TGTTCGT-TT-ATTTGTGTTCG
1 TGTTCGTGTTCATTTATGTTCG
1426916 T
1 T
1426917 TTATGTTCGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 2 0.10
22 7 0.35
ACGTcount: A:0.07, C:0.12, G:0.23, T:0.58
Consensus pattern (22 bp):
TGTTCGTGTTCATTTATGTTCG
Found at i:1426914 original size:14 final size:16
Alignment explanation
Indices: 1426870--1426926 Score: 91
Period size: 16 Copynumber: 3.7 Consensus size: 16
1426860 ACGTTTATGT
*
1426870 TTTATGTTCGTGTTCA
1 TTTATGTTCGTGTTCG
1426886 TTTATGTTCGTGTTCG
1 TTTATGTTCGTGTTCG
1426902 TTTAT-TT-GTGTTCG
1 TTTATGTTCGTGTTCG
1426916 TTTATGTTCGT
1 TTTATGTTCGT
1426927 TTATTTATTA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
14 12 0.32
15 4 0.11
16 22 0.58
ACGTcount: A:0.09, C:0.11, G:0.21, T:0.60
Consensus pattern (16 bp):
TTTATGTTCGTGTTCG
Found at i:1426933 original size:14 final size:16
Alignment explanation
Indices: 1426870--1426934 Score: 84
Period size: 16 Copynumber: 4.3 Consensus size: 16
1426860 ACGTTTATGT
1426870 TTTATGTTCGTGTTCA
1 TTTATGTTCGTGTTCA
*
1426886 TTTATGTTCGTGTTCG
1 TTTATGTTCGTGTTCA
*
1426902 TTTAT-TT-GTGTTCG
1 TTTATGTTCGTGTTCA
1426916 TTTATGTTCGT-TT-A
1 TTTATGTTCGTGTTCA
1426930 TTTAT
1 TTTAT
1426935 TAAATGAACG
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
14 17 0.38
15 6 0.13
16 22 0.49
ACGTcount: A:0.11, C:0.09, G:0.18, T:0.62
Consensus pattern (16 bp):
TTTATGTTCGTGTTCA
Found at i:1427015 original size:16 final size:16
Alignment explanation
Indices: 1426994--1427026 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
1426984 CAAAAAATTT
1426994 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
1427010 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
1427026 T
1 T
1427027 CTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:1427394 original size:80 final size:80
Alignment explanation
Indices: 1427261--1427422 Score: 324
Period size: 80 Copynumber: 2.0 Consensus size: 80
1427251 TCTCTTTTAG
1427261 TTCATGTTTTTATGACTTTTCGAATCATGCACATATTGTTGATAAATTGCATTTTAGTCTTAAAT
1 TTCATGTTTTTATGACTTTTCGAATCATGCACATATTGTTGATAAATTGCATTTTAGTCTTAAAT
1427326 TTTATATATGACTTA
66 TTTATATATGACTTA
1427341 TTCATGTTTTTATGACTTTTCGAATCATGCACATATTGTTGATAAATTGCATTTTAGTCTTAAAT
1 TTCATGTTTTTATGACTTTTCGAATCATGCACATATTGTTGATAAATTGCATTTTAGTCTTAAAT
1427406 TTTATATATGACTTA
66 TTTATATATGACTTA
1427421 TT
1 TT
1427423 TTCACTCTTG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.49
Consensus pattern (80 bp):
TTCATGTTTTTATGACTTTTCGAATCATGCACATATTGTTGATAAATTGCATTTTAGTCTTAAAT
TTTATATATGACTTA
Found at i:1428555 original size:18 final size:18
Alignment explanation
Indices: 1428532--1428566 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
1428522 AGGCAGCAAA
1428532 GTGTGCGTGTTGCGAAAG
1 GTGTGCGTGTTGCGAAAG
1428550 GTGTGCGTGTTGCGAAA
1 GTGTGCGTGTTGCGAAA
1428567 ATTTCAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.11, G:0.43, T:0.29
Consensus pattern (18 bp):
GTGTGCGTGTTGCGAAAG
Found at i:1428589 original size:20 final size:20
Alignment explanation
Indices: 1428566--1428673 Score: 65
Period size: 20 Copynumber: 5.4 Consensus size: 20
1428556 GTGTTGCGAA
1428566 AATTTCAATTGTGTGTTGTG
1 AATTTCAATTGTGTGTTGTG
* * ****
1428586 AATTTGAAATT-CGCAACGTG
1 AATTT-CAATTGTGTGTTGTG
* *
1428606 AATTTTAATTGTGTGTTGCG
1 AATTTCAATTGTGTGTTGTG
* * * *
1428626 AATTTGATTTTTGTGTTGCG
1 AATTTCAATTGTGTGTTGTG
* * *
1428646 AATTTTACTTCTGTGTTGTG
1 AATTTCAATTGTGTGTTGTG
1428666 AATTTCAA
1 AATTTCAA
1428674 AACTGAGTTG
Statistics
Matches: 64, Mismatches: 22, Indels: 4
0.71 0.24 0.04
Matches are distributed among these distances:
19 4 0.06
20 56 0.88
21 4 0.06
ACGTcount: A:0.23, C:0.08, G:0.21, T:0.47
Consensus pattern (20 bp):
AATTTCAATTGTGTGTTGTG
Found at i:1428683 original size:20 final size:20
Alignment explanation
Indices: 1428660--1428723 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
1428650 TTACTTCTGT
1428660 GTTGTGAATTTCAAAACTGA
1 GTTGTGAATTTCAAAACTGA
* * * *
1428680 GTTGCGAATTAC-AAATTTA
1 GTTGTGAATTTCAAAACTGA
1428699 CGTTGTGAATTTCAAAACTGA
1 -GTTGTGAATTTCAAAACTGA
1428720 GTTG
1 GTTG
1428724 CGAAGTTGGA
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
19 5 0.15
20 24 0.71
21 5 0.15
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (20 bp):
GTTGTGAATTTCAAAACTGA
Found at i:1429060 original size:16 final size:17
Alignment explanation
Indices: 1429029--1429063 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
1429019 TACTTCGTTT
*
1429029 TTTTATGTTTTTTATTA
1 TTTTATGTTCTTTATTA
1429046 TTTTAT-TTCTTTATTA
1 TTTTATGTTCTTTATTA
1429062 TT
1 TT
1429064 ATTTTTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTATGTTCTTTATTA
Found at i:1429144 original size:30 final size:27
Alignment explanation
Indices: 1429096--1429167 Score: 67
Period size: 30 Copynumber: 2.6 Consensus size: 27
1429086 TATTTTTTTC
*
1429096 ATTTATTCT-TTTTATTGTTATATTAATATT
1 ATTTATT-TATTTTTTTGTTATA-T-AT-TT
*
1429126 ATTTATTTATTTTTTTGTTTTATATTT
1 ATTTATTTATTTTTTTGTTATATATTT
*
1429153 ATTTA-ATATTTTTTT
1 ATTTATTTATTTTTTT
1429168 CCTTTTGATC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 9 0.24
27 7 0.18
28 2 0.05
29 2 0.05
30 18 0.47
ACGTcount: A:0.24, C:0.01, G:0.03, T:0.72
Consensus pattern (27 bp):
ATTTATTTATTTTTTTGTTATATATTT
Found at i:1434010 original size:165 final size:165
Alignment explanation
Indices: 1433604--1434647 Score: 1002
Period size: 165 Copynumber: 6.3 Consensus size: 165
1433594 TTTGCCAACA
* * *
1433604 AAAGACCTTCGAGTTCGACTACGCTCAGCTCAAAGGCACATCATTTGCAGCATAGCTTAAGTCAA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * * * *
1433669 GAATGGCTATCTACCAATCAAAGACCTTCGAGTTCGACCACGCTCAGTTCCAAGGCACATCATTT
66 GAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
*
1433734 GCAGCATAGCTTAAGTCGAGAA-GGCTATCT-ACC
131 GCAGCATAACTTAAGTCGAGAAGGGCTATCTGACC
* * * * * * * * * * *
1433767 AAAGGCCCTCAAGTTTGATTACACTCAGGTTCGAGGGCATATTATTTGCAGCATAACTTAAGTCG
1 AAAGACCTTCGAGTTCGACTACGCTCA-GCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* *
1433832 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATT
65 AGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* *
1433897 TGCAGTATAGCTTAAGTCGAGAAGGGCTATCTG-CC
130 TGCAGCATAACTTAAGTCGAGAAGGGCTATCTGACC
* * * * * * * * * *
1433932 AAAGACCCTCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCT
1 AAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * * * * * *
1433997 AGAAGGGTTATCTGTC-ACCAAAAGACCTTCTAGTTCAACTTCGCTCAACTCTAAGGCATATAAT
65 AGAAGGGCTATCTGCCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCAT
*
1434061 TTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACC
129 TTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG---ACC
* * *
1434101 AAAGACCTTCGAGTTCGACCACGCTTAGCTCCAAGGCACATCATTTGTAGCATAACTTAAGTCGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * * * * * * * *
1434166 GAAGGGCTAT-T---TACCAAAGACCCTCAAGTTCGATTACACTCAGCTTCGAGTGCATATTATT
66 GAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAG-GCACATCATT
** *
1434227 TATAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACC
130 TGCAGCATAACTTAAGTCGAGAAGGGCTATCTG---ACC
* * *
1434266 AAAAACCTTCGTGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTTGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * * ** ** * *
1434331 TAAGGGCTATCTG----CCAAAGACCCTCAAGTTCGTTTATACTCAGCTTCGAGGGCACATCATT
66 GAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATT
** * * *
1434392 TATAGCATAACTCT-AGGCTAGAAGGGTTATCTGTCACC
130 TGCAGCATAACT-TAAGTCGAGAAGGGCTATCTG--ACC
* * * * *
1434430 AAAAGACCTTCGAGTTCGAGTACGCTCAACTCTAAGGCATATCATTTGCAACATAACTTAAGTCG
1 -AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * *
1434495 AGAAGGGTTATCTTCCAATCAAAGACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCACCTCATT
65 AGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
*
1434560 TGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-CC
130 TGCAGCATAACTTAAGTCGAGAAGGGCTATCTGACC
* * * * * **
1434595 AAAGACCTTCGAGTTCGATTCCACTTAGCT-CAAGGAACATCATTCACAGCATA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATA
1434648 GCTCTAGTCG
Statistics
Matches: 733, Mismatches: 127, Indels: 42
0.81 0.14 0.05
Matches are distributed among these distances:
163 38 0.05
164 167 0.23
165 398 0.54
166 4 0.01
167 2 0.00
168 76 0.10
169 48 0.07
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (165 bp):
AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
GAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
GCAGCATAACTTAAGTCGAGAAGGGCTATCTGACC
Found at i:1434114 original size:249 final size:248
Alignment explanation
Indices: 1433584--1434647 Score: 1034
Period size: 249 Copynumber: 4.3 Consensus size: 248
1433574 GCTCAAGGCA
* * * *
1433584 AGAAAGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCAAAGGCACATCATT
1 AGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * * * ** *
1433649 TGCAGCATAGCTTAAGTCAAGAATGGCTATCTACCAATCAAAGACCTTCGAGTTCGACCACGCTC
66 TGCAGCATAACTTAAGTCGAGAAGGGCTATCT-GC---CAAAGACCCTCAAGTTCGATTACACTC
* * * * *
1433714 AG-TTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAA-GGCTATC-T-ACC-AAAGGCC
127 AGCTTCGAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTTCACCAAAAGACC
* * ** * * * * * * *
1433774 CTCAAGTTTGATTACACTCAGGTTCGAGGGCATATTATTTGCAGCATAACTTAAGTCG
192 TTCTAGTTCAACTACGCTCA-GCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* *
1433832 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* *
1433897 TGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCT
66 TGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCT
* * * *
1433962 TCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTC
131 TCGAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGTTATCT-TCACCAAAAGACCTTC
* * * * *
1434027 TAGTTCAACTTCGCTCAACTCTAAGGCATATAATTTGCAGCATAACTTAAGTCG
195 TAGTTCAACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * *
1434081 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACCACGCTTAGCTCCAAGGCACATCATT
1 AGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * *
1434146 TGTAGCATAACTTAAGTCGAGAAGGGCTATTTACCAAAGACCCTCAAGTTCGATTACACTCAGCT
66 TGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCT
* * * *
1434211 TCG-AGTGCATATTATTTATAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAA-ACCT
131 TCGAAG-GCACATCATTTACAGCATAACTTAAGTCGAGAAGGGTTATCT-TC-ACCAAAAGACCT
* *
1434274 TCGT-GTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTTG
193 TC-TAGTTCAACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * ** ** * *
1434330 ATAAGGGCTATCTG----CCAAAGACCCTCAAGTTCGTTTATACTCAGCTTCGAGGGCACATCAT
1 AGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCAT
** * * * * * * *
1434391 TTATAGCATAACTCT-AGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGAGTACGC
65 TTGCAGCATAACT-TAAGTCGAGAAGGGCTATCTG---CC-AAAGACCCTCAAGTTCGATTACAC
* * * * * *
1434455 TCAAC-TCTAAGGCATATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTTC-CAATCAAA
125 TCAGCTTCGAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTTCACCA--AAA
* * *
1434518 GACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCACCTCATTTGCAGCATAGCTTAAGTCG
188 GACCTTCTAGTTCAACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * *
1434579 AGAAGGGCTATCTG----CCAAAGACCTTCGAGTTCGATTCCACTTAGCT-CAAGGAACATCATT
1 AGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
**
1434639 CACAGCATA
66 TGCAGCATA
1434648 GCTCTAGTCG
Statistics
Matches: 690, Mismatches: 106, Indels: 41
0.82 0.13 0.05
Matches are distributed among these distances:
244 24 0.03
245 56 0.08
246 47 0.07
247 20 0.03
248 95 0.14
249 395 0.57
250 53 0.08
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (248 bp):
AGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
TGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCT
TCGAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTTCACCAAAAGACCTTCT
AGTTCAACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
Found at i:1434344 original size:414 final size:414
Alignment explanation
Indices: 1433570--1434624 Score: 1626
Period size: 414 Copynumber: 2.6 Consensus size: 414
1433560 TCAGTTGCAA
* * * * * * * *
1433570 CATAGCTCAAGGCAAGAAAGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTC
1 CATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAACTC
* * * * * *
1433635 AAAGGCACATCATTTGCAGCATAGCTTAAGTCAAGAATGGCTATCTACCAATCAAAGACCTTCGA
66 TAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAATCAAAGACCTTCGA
*
1433700 GTTCGACCACGCTCAGTTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAA-GGCTATCT
131 GTTCGACCACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCT
* * * *
1433764 ACCAAAGGCCCTCAAGTTTGATTACACTCAGGTTCGAGGGCATATTATTTGCAGCATAACTTAAG
196 ACCAAAGACCCTCAAGTTCGATTACACTCAGCTTCGAGGGCATATTATTTACAGCATAACTTAAG
* *
1433829 TCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATC
261 TCGAGAAGGGTTATCTGCCAACCAAAAACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* *
1433894 ATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
326 ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
1433959 GCTTCGAGGGCACATCATTTACAG
391 GCTTCGAGGGCACATCATTTACAG
* * *
1433983 CATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCTAGTTCAACTTCGCTCAACTC
1 CATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAACTC
* * *
1434048 TAAGGCATATAATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGA
66 TAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAATCAAAGACCTTCGA
* * * *
1434113 GTTCGACCACGCTTAGCTCCAAGGCACATCATTTGTAGCATAACTTAAGTCGAGAAGGGCTATTT
131 GTTCGACCACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCT
* *
1434178 ACCAAAGACCCTCAAGTTCGATTACACTCAGCTTCGAGTGCATATTATTTATAGCATAACTTAAG
196 ACCAAAGACCCTCAAGTTCGATTACACTCAGCTTCGAGGGCATATTATTTACAGCATAACTTAAG
*
1434243 TCGAGAAGGGTTATCTGCCAACCAAAAACCTTCGTGTTCGACTACGCTCAGCTCCAAGGCACATC
261 TCGAGAAGGGTTATCTGCCAACCAAAAACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * * *
1434308 ATTTGCAGCATAACTTAAGTTGATAAGGGCTATCTGCCAAAGACCCTCAAGTTCGTTTATACTCA
326 ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
*
1434373 GCTTCGAGGGCACATCATTTATAG
391 GCTTCGAGGGCACATCATTTACAG
* *
1434397 CATAACTCTAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGAGTACGCTCAACTC
1 CATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAACTC
* *
1434462 TAAGGCATATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTTCCAATCAAAGACCTTCGA
66 TAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAATCAAAGACCTTCGA
* * *
1434527 GTTCAACTACGCTCAGCTCCAAGGCACCTCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCT
131 GTTCGACCACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCT
* * * * *
1434592 GCCAAAGACCTTCGAGTTCGATTCCACTTAGCT
196 ACCAAAGACCCTCAAGTTCGATTACACTCAGCT
1434625 CAAGGAACAT
Statistics
Matches: 579, Mismatches: 62, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
413 162 0.28
414 417 0.72
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (414 bp):
CATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAACTC
TAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAATCAAAGACCTTCGA
GTTCGACCACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCT
ACCAAAGACCCTCAAGTTCGATTACACTCAGCTTCGAGGGCATATTATTTACAGCATAACTTAAG
TCGAGAAGGGTTATCTGCCAACCAAAAACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
GCTTCGAGGGCACATCATTTACAG
Found at i:1436180 original size:74 final size:74
Alignment explanation
Indices: 1436100--1436357 Score: 190
Period size: 74 Copynumber: 3.3 Consensus size: 74
1436090 TGTAAATTAA
1436100 TTTTTTTAT-TCTTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTACTTCATTT
1 TTTTTTTATGT-TTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTACTTCATTT
1436164 TTTTATTTAT
65 TTTTATTTAT
* *** * *
1436174 TTTTTTTATGTTTTTTTA-TT---ATTTTATTTCTTTATTATTATTT-TTTACTCAATTCCAC-T
1 TTTTTTTATGTTTTTTTATTTCAAAATTTAACCCTTT-TTATAATTTATTT--T---TTCTACTT
1436233 CATATTTTTTCATCTATTCGTTTTAAATT
60 C--A-TTTTT--T-TA-----TTT--A-T
1436262 AATTTTTTTAT-TCTTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTACTTCAT
1 --TTTTTTTATGT-TTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTACTTCAT
1436326 TTTTTTATTTAT
63 TTTTTTATTTAT
1436338 TTTTTTTATGTTTTTTTATT
1 TTTTTTTATGTTTTTTTATT
1436358 ATTTTATTTC
Statistics
Matches: 141, Mismatches: 12, Indels: 62
0.66 0.06 0.29
Matches are distributed among these distances:
70 12 0.09
71 8 0.06
72 1 0.01
73 2 0.01
74 36 0.26
75 7 0.05
76 2 0.01
77 6 0.04
79 4 0.03
80 2 0.01
84 2 0.01
85 4 0.03
87 6 0.04
88 2 0.01
89 6 0.04
90 18 0.13
91 2 0.01
92 1 0.01
93 8 0.06
94 12 0.09
ACGTcount: A:0.21, C:0.10, G:0.01, T:0.68
Consensus pattern (74 bp):
TTTTTTTATGTTTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTACTTCATTTT
TTTATTTAT
Found at i:1436187 original size:10 final size:9
Alignment explanation
Indices: 1436163--1436220 Score: 55
Period size: 10 Copynumber: 6.0 Consensus size: 9
1436153 CTACTTCATT
1436163 TTTTTATTTA
1 TTTTT-TTTA
1436173 TTTTTTTTA
1 TTTTTTTTA
1436182 TGTTTTTTTA
1 T-TTTTTTTA
*
1436192 -TTATTTTA
1 TTTTTTTTA
1436200 TTTCTTTATTA
1 TTT-TTT-TTA
1436211 TTATTTTTTA
1 TT-TTTTTTA
1436221 CTCAATTCCA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
8 7 0.17
9 7 0.17
10 18 0.44
11 8 0.20
12 1 0.02
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:1436193 original size:19 final size:18
Alignment explanation
Indices: 1436163--1436220 Score: 55
Period size: 18 Copynumber: 3.0 Consensus size: 18
1436153 CTACTTCATT
1436163 TTTTTATTTATTTTTTTTA
1 TTTTT-TTTATTTTTTTTA
*
1436182 TGTTTTTTTA-TTATTTTA
1 T-TTTTTTTATTTTTTTTA
1436200 TTTCTTTATTATTATTTTTTA
1 TTT-TTT-TTATT-TTTTTTA
1436221 CTCAATTCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
17 2 0.06
18 11 0.34
19 8 0.25
20 5 0.16
21 6 0.19
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTTTTTATTTTTTTTA
Found at i:1436220 original size:13 final size:14
Alignment explanation
Indices: 1436134--1436220 Score: 69
Period size: 13 Copynumber: 6.4 Consensus size: 14
1436124 AATTTAACCC
*
1436134 TTTTTATAATTTAT
1 TTTTTATTATTTAT
* *
1436148 TTTTT-CTACTTCA-
1 TTTTTATTA-TTTAT
1436161 TTTTT-TTATTTAT
1 TTTTTATTATTTAT
*
1436174 TTTTT-TTATGT-T
1 TTTTTATTATTTAT
1436186 TTTTTATTATTTTAT
1 TTTTTATTA-TTTAT
1436201 TTCTTTATTA-TTAT
1 TT-TTTATTATTTAT
1436215 TTTTTA
1 TTTTTA
1436221 CTCAATTCCA
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
12 9 0.15
13 25 0.42
14 16 0.27
15 3 0.05
16 7 0.12
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (14 bp):
TTTTTATTATTTAT
Found at i:1436337 original size:164 final size:164
Alignment explanation
Indices: 1436092--1436421 Score: 660
Period size: 164 Copynumber: 2.0 Consensus size: 164
1436082 GTCACTAATG
1436092 TAAATTAATTTTTTTATTCTTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTAC
1 TAAATTAATTTTTTTATTCTTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTAC
1436157 TTCATTTTTTTATTTATTTTTTTTATGTTTTTTTATTATTTTATTTCTTTATTATTATTTTTTAC
66 TTCATTTTTTTATTTATTTTTTTTATGTTTTTTTATTATTTTATTTCTTTATTATTATTTTTTAC
1436222 TCAATTCCACTCATATTTTTTCATCTATTCGTTT
131 TCAATTCCACTCATATTTTTTCATCTATTCGTTT
1436256 TAAATTAATTTTTTTATTCTTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTAC
1 TAAATTAATTTTTTTATTCTTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTAC
1436321 TTCATTTTTTTATTTATTTTTTTTATGTTTTTTTATTATTTTATTTCTTTATTATTATTTTTTAC
66 TTCATTTTTTTATTTATTTTTTTTATGTTTTTTTATTATTTTATTTCTTTATTATTATTTTTTAC
1436386 TCAATTCCACTCATATTTTTTCATCTATTCGTTT
131 TCAATTCCACTCATATTTTTTCATCTATTCGTTT
1436420 TA
1 TA
1436422 TTGTTATATT
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
164 166 1.00
ACGTcount: A:0.22, C:0.11, G:0.01, T:0.66
Consensus pattern (164 bp):
TAAATTAATTTTTTTATTCTTTTTTATTTCAAAATTTAACCCTTTTTATAATTTATTTTTTCTAC
TTCATTTTTTTATTTATTTTTTTTATGTTTTTTTATTATTTTATTTCTTTATTATTATTTTTTAC
TCAATTCCACTCATATTTTTTCATCTATTCGTTT
Found at i:1436351 original size:10 final size:9
Alignment explanation
Indices: 1436327--1436384 Score: 55
Period size: 10 Copynumber: 6.0 Consensus size: 9
1436317 CTACTTCATT
1436327 TTTTTATTTA
1 TTTTT-TTTA
1436337 TTTTTTTTA
1 TTTTTTTTA
1436346 TGTTTTTTTA
1 T-TTTTTTTA
*
1436356 -TTATTTTA
1 TTTTTTTTA
1436364 TTTCTTTATTA
1 TTT-TTT-TTA
1436375 TTATTTTTTA
1 TT-TTTTTTA
1436385 CTCAATTCCA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
8 7 0.17
9 7 0.17
10 18 0.44
11 8 0.20
12 1 0.02
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:1436357 original size:19 final size:18
Alignment explanation
Indices: 1436327--1436384 Score: 55
Period size: 18 Copynumber: 3.0 Consensus size: 18
1436317 CTACTTCATT
1436327 TTTTTATTTATTTTTTTTA
1 TTTTT-TTTATTTTTTTTA
*
1436346 TGTTTTTTTA-TTATTTTA
1 T-TTTTTTTATTTTTTTTA
1436364 TTTCTTTATTATTATTTTTTA
1 TTT-TTT-TTATT-TTTTTTA
1436385 CTCAATTCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
17 2 0.06
18 11 0.34
19 8 0.25
20 5 0.16
21 6 0.19
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTTTTTATTTTTTTTA
Found at i:1436384 original size:13 final size:14
Alignment explanation
Indices: 1436298--1436384 Score: 69
Period size: 13 Copynumber: 6.4 Consensus size: 14
1436288 AATTTAACCC
*
1436298 TTTTTATAATTTAT
1 TTTTTATTATTTAT
* *
1436312 TTTTT-CTACTTCA-
1 TTTTTATTA-TTTAT
1436325 TTTTT-TTATTTAT
1 TTTTTATTATTTAT
*
1436338 TTTTT-TTATGT-T
1 TTTTTATTATTTAT
1436350 TTTTTATTATTTTAT
1 TTTTTATTA-TTTAT
1436365 TTCTTTATTA-TTAT
1 TT-TTTATTATTTAT
1436379 TTTTTA
1 TTTTTA
1436385 CTCAATTCCA
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
12 9 0.15
13 25 0.42
14 16 0.27
15 3 0.05
16 7 0.12
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (14 bp):
TTTTTATTATTTAT
Found at i:1440775 original size:137 final size:137
Alignment explanation
Indices: 1440590--1440875 Score: 330
Period size: 137 Copynumber: 2.1 Consensus size: 137
1440580 TTAAAGTAGA
* * *
1440590 GCTCTAATATTAACTTAAATTAATTTAATCAATATTGCAATTCGAATAATTAAAGTGGAACCTCG
1 GCTCTAATATTAACCTAAATTAATTTAATCAATATTGCAATTCAAATAATTAAAGTGGAACCTCA
* * *
1440655 AGGAAAAGCAAGGACCAAATTAAGAATTCACCTAATTTAAGGACTATATA-TGAAATC-AGACCT
66 AGCAAAAGCAAGGACAAAATTAAGAATTCACCTAATTTAAGGACTA-AAAGTGAAATCAAG-CCT
1440718 AAGATGGAG
129 AAGATGGAG
* **
1440727 TCTCTAATATTAATCCT-AATTAATTTTAATCAAT-TATGCAA-TCAAATAATTAATTTGGAACC
1 GCTCTAATATTAA-CCTAAATTAA-TTTAATCAATAT-TGCAATTCAAATAATTAAAGTGGAACC
* * * * ** * *
1440789 TCAAGCAAAATCGATGACAAAATTAAGGATTTGCCTATTTTAAGGACTAAAAGTGAAATTAAGCC
63 TCAAGCAAAAGCAAGGACAAAATTAAGAATTCACCTAATTTAAGGACTAAAAGTGAAATCAAGCC
*
1440854 TAATATGGAG
128 TAAGATGGAG
1440864 GCTCTAATATTA
1 GCTCTAATATTA
1440876 TTTTAATTAA
Statistics
Matches: 125, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
136 2 0.02
137 104 0.83
138 19 0.15
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (137 bp):
GCTCTAATATTAACCTAAATTAATTTAATCAATATTGCAATTCAAATAATTAAAGTGGAACCTCA
AGCAAAAGCAAGGACAAAATTAAGAATTCACCTAATTTAAGGACTAAAAGTGAAATCAAGCCTAA
GATGGAG
Found at i:1443192 original size:40 final size:40
Alignment explanation
Indices: 1443118--1443225 Score: 164
Period size: 40 Copynumber: 2.7 Consensus size: 40
1443108 TCTTGAAAAC
* * *
1443118 GTTGACCCAACTCCTT-TGCGATGGTTGACCCAAGGTGAT
1 GTTGACCCAACTCCTTATGTGATGGATGAACCAAGGTGAT
*
1443157 GTTGATCCAACTCCTTATGTGATGGATGAACCAAGGTGAT
1 GTTGACCCAACTCCTTATGTGATGGATGAACCAAGGTGAT
*
1443197 GTTGACCCAACTCCTTATATGATGGATGA
1 GTTGACCCAACTCCTTATGTGATGGATGA
1443226 GAGAAATGAT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 15 0.24
40 47 0.76
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (40 bp):
GTTGACCCAACTCCTTATGTGATGGATGAACCAAGGTGAT
Found at i:1443256 original size:42 final size:40
Alignment explanation
Indices: 1443160--1443256 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 40
1443150 AGGTGATGTT
* * * * *
1443160 GATCCAACTCCTTATGTGATGGATGAACCAAGGTGATGTT
1 GATCCAACTCCTTATATGATGGATGAACAAAGATGACGTC
* *
1443200 GACCCAACTCCTTATATGATGGATGAGAGAAATGATGACGTC
1 GATCCAACTCCTTATATGATGGATGA-ACAAA-GATGACGTC
*
1443242 GATCCAACTTCTTAT
1 GATCCAACTCCTTAT
1443257 GCAATCGATG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
40 24 0.52
41 3 0.07
42 19 0.41
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (40 bp):
GATCCAACTCCTTATATGATGGATGAACAAAGATGACGTC
Found at i:1443655 original size:117 final size:117
Alignment explanation
Indices: 1443496--1443748 Score: 346
Period size: 117 Copynumber: 2.2 Consensus size: 117
1443486 ATTCCAACTC
* * * * * *
1443496 CTTATATGATGGAAACGAGCTAATGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTCCTTCAT
1 CTTATATGATGGAATCAAGCTAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCAT
* * *
1443561 CGGATAAGTTCTTTTCATTATGGACCC-TCCACTAGAAATATTGATCCACCTT
66 CGGATAAGTTCTTCTCATTATGAACCCTTCCACTAAAAATATTGATCCACC-T
*
1443613 CTTATGTGATGGAATCAAGCTAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCAT
1 CTTATATGATGGAATCAAGCTAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCAT
* * *
1443678 CGGATGAGTTCTTCTCATTATGAACCCTTCTATTAAAAATATTGATCCACCT
66 CGGATAAGTTCTTCTCATTATGAACCCTTCCACTAAAAATATTGATCCACCT
* *
1443730 CATTCTCTGATGGAATCAA
1 C-TTATATGATGGAATCAA
1443749 ACAAAGTGAT
Statistics
Matches: 119, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
117 84 0.71
118 35 0.29
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (117 bp):
CTTATATGATGGAATCAAGCTAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCAT
CGGATAAGTTCTTCTCATTATGAACCCTTCCACTAAAAATATTGATCCACCT
Found at i:1443893 original size:321 final size:320
Alignment explanation
Indices: 1443290--1443903 Score: 904
Period size: 321 Copynumber: 1.9 Consensus size: 320
1443280 GCTATTCTAT
* * *
1443290 CTTCTTATGTGATGGAAACGAGCTAAGGTTGAACAAGTTCTTCTCCTTATGAACTTCTTCTCCCT
1 CTTCTTATGTGATGGAAACAAGCTAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCT
* * * * * * *
1443355 TATTAGATTAGTTCTTCTCATTATGAACTCTCCACTGAAAATATTGATCCACCTCCTTATGTGAT
66 CATCAGATGAGTTCTTCTCATTATGAACCCTCCACTAAAAATATTGATCCACCTCATTATCTGAT
* ** * * * *
1443420 GTAATTGAACAAAGTTATGGTGTTGATCCAACTCCATATGCCATGAATGAGCCAAGTATTGGTGC
131 GGAATCAAACAAAGTGATGATGCTGATCCAACTCCATATACCATGAATGAGCCAAGTATTGGTGC
* *
1443485 TATTCCAACTCCTTATATGATGGAAACGAGCTAATGTTGAACAAGTTCTTCTCATTATGAACTTT
196 TATTCCAACTCCTTATATGATGGAAACGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAACTTC
* * * *
1443550 TTCTCCTTCATCGGATAAGTTCTTTTCATTATGGACCCTCCACTAGAAATATTGATCCAC
261 TTCTCCCTCATCAGACAAGTTCTTCTCATTATGGACCCTCCACTAGAAATATTGATCCAC
*
1443610 CTTCTTATGTGATGGAATCAAGCTAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCT
1 CTTCTTATGTGATGGAAACAAGCTAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCT
* * * *
1443675 CATCGGATGAGTTCTTCTCATTATGAACCCTTCTATTAAAAATATTGATCCACCTCATTCTCTGA
66 CATCAGATGAGTTCTTCTCATTATGAACCC-TCCACTAAAAATATTGATCCACCTCATTATCTGA
* *
1443740 TGGAATCAAACAAAGTGATGATGCTGATCCAACTCCATATACGATGGATGAGCCAAGTATTGGTG
130 TGGAATCAAACAAAGTGATGATGCTGATCCAACTCCATATACCATGAATGAGCCAAGTATTGGTG
* * * * *
1443805 TTGTTGCAACTTCTTATGTGATGGAAACGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAACTT
195 CTATTCCAACTCCTTATATGATGGAAACGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAACTT
1443870 CTTCTCCCTCATCAGACAAGTTCTTCTCATTATG
260 CTTCTCCCTCATCAGACAAGTTCTTCTCATTATG
1443904 TTTTTCATTA
Statistics
Matches: 258, Mismatches: 35, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
320 86 0.33
321 172 0.67
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (320 bp):
CTTCTTATGTGATGGAAACAAGCTAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCT
CATCAGATGAGTTCTTCTCATTATGAACCCTCCACTAAAAATATTGATCCACCTCATTATCTGAT
GGAATCAAACAAAGTGATGATGCTGATCCAACTCCATATACCATGAATGAGCCAAGTATTGGTGC
TATTCCAACTCCTTATATGATGGAAACGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAACTTC
TTCTCCCTCATCAGACAAGTTCTTCTCATTATGGACCCTCCACTAGAAATATTGATCCAC
Found at i:1445558 original size:55 final size:55
Alignment explanation
Indices: 1445371--1445739 Score: 298
Period size: 55 Copynumber: 6.7 Consensus size: 55
1445361 CGAAGGACTT
* ** * * *
1445371 ATCATCAAGAAATCTTTGAAAATCAGACTTGGCTTC-TTCAAAAATTAATTTAAAA
1 ATCATCAAGAAACCCCTGAAAATCAGACTTAGCTTCTTTC-AAAACTCATTTAAAA
* * * * * * * * * *
1445426 TTATCATTAAGAAACCCCTAAAAATTAGGCTTAGTTTTTTTAAAAAAAATCATTTGAAT
1 --ATCATCAAGAAACCCCTGAAAATCAGACTTAGCTTCTTT--CAAAACTCATTTAAAA
* * * *
1445485 A-CATTAAGAAACCCCTGAAAATCGGGA-TTAGCTTCTTTGAAAACTCATTTATAA
1 ATCATCAAGAAACCCCTGAAAATC-AGACTTAGCTTCTTTCAAAACTCATTTAAAA
* ** * *
1445539 ATCATTAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAA
1 ATCATCAAGAAACCCCTGAAAATCAGACTTAGCTTCTTTCAAAACTCATTTAAAA
** * ** * * *
1445594 ATCATCAAGAAA-CTTTCAAAAATTGGACTTAGCTTATTTCAAAATTTATTTAAAA
1 ATCATCAAGAAACCCCT-GAAAATCAGACTTAGCTTCTTTCAAAACTCATTTAAAA
* * *
1445649 ATCATCAAGAAACCCCTGAAAATCAGACTTAGCTTCTTTCAAAATTCACTTGAAA
1 ATCATCAAGAAACCCCTGAAAATCAGACTTAGCTTCTTTCAAAACTCATTTAAAA
* *
1445704 AT-ATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCT
1 ATCATCAAGAAACCCCTGAAAATCAGACTTAGCTTCT
1445740 AAAAAAATTA
Statistics
Matches: 251, Mismatches: 53, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
54 48 0.19
55 131 0.52
56 31 0.12
57 28 0.11
58 2 0.01
59 11 0.04
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.33
Consensus pattern (55 bp):
ATCATCAAGAAACCCCTGAAAATCAGACTTAGCTTCTTTCAAAACTCATTTAAAA
Found at i:1447823 original size:13 final size:13
Alignment explanation
Indices: 1447805--1447887 Score: 64
Period size: 13 Copynumber: 6.3 Consensus size: 13
1447795 CATCTTGAAG
1447805 TTTTTCTTCTTCT
1 TTTTTCTTCTTCT
*
1447818 TTTTTC-ACTCTCT
1 TTTTTCTTCT-TCT
1447831 TTTTTCTCTCTTCT
1 TTTTTCT-TCTTCT
*
1447845 TTCTTTCTTTTATCT
1 TT-TTTCTTCT-TCT
* * *
1447860 CTTTT-TT-ATGT
1 TTTTTCTTCTTCT
1447871 TTTTTCTTCTTCT
1 TTTTTCTTCTTCT
1447884 TTTT
1 TTTT
1447888 GCTCTATCTC
Statistics
Matches: 54, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
11 6 0.11
12 4 0.07
13 23 0.43
14 10 0.19
15 11 0.20
ACGTcount: A:0.04, C:0.22, G:0.01, T:0.73
Consensus pattern (13 bp):
TTTTTCTTCTTCT
Found at i:1447839 original size:11 final size:11
Alignment explanation
Indices: 1447805--1447866 Score: 54
Period size: 11 Copynumber: 5.4 Consensus size: 11
1447795 CATCTTGAAG
1447805 TTTTTCTTCTTCT
1 TTTTTC-TC-TCT
1447818 TTTTTCACTCTCT
1 TTTTT--CTCTCT
1447831 TTTTTCTCTCT
1 TTTTTCTCTCT
* *
1447842 TCTTTCTTTCT
1 TTTTTCTCTCT
*
1447853 TTTATCTCT-T
1 TTTTTCTCTCT
1447863 TTTT
1 TTTT
1447867 ATGTTTTTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
10 4 0.10
11 21 0.51
13 13 0.32
14 2 0.05
15 1 0.02
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTTCTCTCT
Found at i:1447855 original size:20 final size:20
Alignment explanation
Indices: 1447830--1447885 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
1447820 TTTCACTCTC
*
1447830 TTTTTTCTCTCTTCTTTCT-
1 TTTTTTCTCTCTTCTTTATG
* *
1447849 TTCTTTTATCTCTTTTTTATG
1 TT-TTTTCTCTCTTCTTTATG
1447870 TTTTTTCT-TCTTCTTT
1 TTTTTTCTCTCTTCTTT
1447886 TTGCTCTATC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 9 0.30
20 19 0.63
21 2 0.07
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTTTCTCTCTTCTTTATG
Found at i:1447861 original size:31 final size:30
Alignment explanation
Indices: 1447809--1447866 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
1447799 TTGAAGTTTT
1447809 TCTTCTTCTTTTTTCACTCTCTTTTTTCTC
1 TCTTCTTCTTTTTTCACTCTCTTTTTTCTC
*
1447839 TCTTCTTTCTTTCTTTTA-TCTCTTTTTT
1 TCTTC-TTCTTT-TTTCACTCTCTTTTTT
1447867 ATGTTTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 5 0.20
31 16 0.64
32 4 0.16
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (30 bp):
TCTTCTTCTTTTTTCACTCTCTTTTTTCTC
Found at i:1447883 original size:39 final size:39
Alignment explanation
Indices: 1447830--1447910 Score: 103
Period size: 38 Copynumber: 2.1 Consensus size: 39
1447820 TTTCACTCTC
* *
1447830 TTTTTTCTCTCTTCTTTCTTTCTTTTATCTCTT-TTTTATG
1 TTTTTTCTCTCTTCTTT-TTGC-TCTATCTCTTCTTTTATG
*
1447870 TTTTTTCT-TCTTCTTTTTGCTCTATCTCTTCTTTTTTG
1 TTTTTTCTCTCTTCTTTTTGCTCTATCTCTTCTTTTATG
1447908 TTT
1 TTT
1447911 GTGTTTTCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 9 0.24
38 12 0.32
39 8 0.22
40 8 0.22
ACGTcount: A:0.04, C:0.20, G:0.04, T:0.73
Consensus pattern (39 bp):
TTTTTTCTCTCTTCTTTTTGCTCTATCTCTTCTTTTATG
Found at i:1451460 original size:136 final size:137
Alignment explanation
Indices: 1451303--1451570 Score: 330
Period size: 137 Copynumber: 2.0 Consensus size: 137
1451293 TAAAGTGGAG
*
1451303 CTCTAATATTAACTTAAATTAA-TTTAATCAA-TATTGCAATTCAAATAATTAA-A-GTGAACCT
1 CTCTAATATTAACATAAATTAATTTTAATCAATTA-TGCAA-TCAAATAATTAATATG-GAACCT
* * * * * * *
1451364 CGAGCAAAAGCAATTACCATATTAAGAATTCACCTAATTTAAGGACTAGATGTAAAATTAGGCCT
63 CAAGCAAAAGCAATGAACAAATTAACAATTCACCTAATTTAAGGACTAAAGGTAAAATTAGGCCT
1451429 AAGATAGAGT
128 AAGATAGAGT
*
1451439 CTCTAATATTAATCAT-AATTAATTTTAATCAATTATGCGATCAAATAATTAATATGGAACCTCA
1 CTCTAATATTAA-CATAAATTAATTTTAATCAATTATGCAATCAAATAATTAATATGGAACCTCA
* ** * * *
1451503 AGTAAAAGTGATGAACAAATTAACAATTTACCTATTTTAAGGACTAAAGGTGAAATTAGGCCTAA
65 AGCAAAAGCAATGAACAAATTAACAATTCACCTAATTTAAGGACTAAAGGTAAAATTAGGCCTAA
1451568 GAT
130 GAT
1451571 GGAGGTTCTC
Statistics
Matches: 112, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
136 30 0.27
137 79 0.71
138 3 0.03
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (137 bp):
CTCTAATATTAACATAAATTAATTTTAATCAATTATGCAATCAAATAATTAATATGGAACCTCAA
GCAAAAGCAATGAACAAATTAACAATTCACCTAATTTAAGGACTAAAGGTAAAATTAGGCCTAAG
ATAGAGT
Found at i:1457266 original size:23 final size:20
Alignment explanation
Indices: 1457237--1457301 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
1457227 TATATAATTT
1457237 TTAATAAATTAAATTAAAAAAA
1 TTAATAAATTAAA-T-AAAAAA
*
1457259 TTATATAAAGATTAAATACAAAA
1 TTA-AT-AA-ATTAAATAAAAAA
*
1457282 TTAATAAATTTAAACAAAAA
1 TTAATAAA-TTAAATAAAAA
1457302 TAGTGATCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
20 1 0.03
21 11 0.31
22 5 0.14
23 10 0.28
24 3 0.08
25 6 0.17
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (20 bp):
TTAATAAATTAAATAAAAAA
Found at i:1457862 original size:37 final size:35
Alignment explanation
Indices: 1457817--1458059 Score: 231
Period size: 35 Copynumber: 6.6 Consensus size: 35
1457807 TATATATTAT
1457817 TATAATATA-A-TTTTTGAAAATATTTTTGAAAAACA
1 TATAATATATAGTTTTT-AAAATATTTTTG-AAAACA
* *
1457852 TATAATATATAGTTTTTTAAAAAATATGTTTTTGAATATA
1 TATAATATATAG-TTTTT--AAAATA--TTTTTGAAAACA
* * *
1457892 TAT-ATATAATAAGGTTTTGAAAACACGCTTTTGAAAACA
1 TATAATAT-AT-A-GTTTTTAAAATA--TTTTTGAAAACA
* *
1457931 TATAATATATAGTTTTTAAAATATTTTTAAAAACG
1 TATAATATATAGTTTTTAAAATATTTTTGAAAACA
* *
1457966 TATATATAATATAGTTTTTTAAATATTTTTGAAAATA
1 TATA-AT-ATATAGTTTTTAAAATATTTTTGAAAACA
*
1458003 TATAATATATAGTTTTTTAAATATTTTTGAAAACA
1 TATAATATATAGTTTTTAAAATATTTTTGAAAACA
* *
1458038 TATAGTACATAGTTTTTAAAAT
1 TATAATATATAGTTTTTAAAAT
1458060 GGTTTTTATA
Statistics
Matches: 174, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
35 69 0.40
36 5 0.03
37 39 0.22
38 6 0.03
39 30 0.17
40 13 0.07
41 11 0.06
42 1 0.01
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.45
Consensus pattern (35 bp):
TATAATATATAGTTTTTAAAATATTTTTGAAAACA
Found at i:1458107 original size:7 final size:7
Alignment explanation
Indices: 1458095--1458126 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
1458085 ATAGTATACA
1458095 TATTATT
1 TATTATT
1458102 TATTATT
1 TATTATT
1458109 TATTATT
1 TATTATT
1458116 TATTATAT
1 TATTAT-T
1458124 TAT
1 TAT
1458127 ATTATATTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TATTATT
Found at i:1470311 original size:32 final size:32
Alignment explanation
Indices: 1470266--1470342 Score: 118
Period size: 32 Copynumber: 2.3 Consensus size: 32
1470256 TAAAAACTCG
* *
1470266 AACATCTATAATCAACTCAAATTTTATAAACT
1 AACAACTAAAATCAACTCAAATTTTATAAACT
1470298 AACAACTAAAATCAACTCAAATTTTATAAACT
1 AACAACTAAAATCAACTCAAATTTTATAAACT
1470330 AACTCAACTAAAA
1 AA--CAACTAAAA
1470343 AAAAATAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
32 32 0.78
34 9 0.22
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (32 bp):
AACAACTAAAATCAACTCAAATTTTATAAACT
Found at i:1470907 original size:20 final size:20
Alignment explanation
Indices: 1470884--1471022 Score: 104
Period size: 20 Copynumber: 6.8 Consensus size: 20
1470874 TTAACCAACT
1470884 TTTTCAAATTTCGCAACAC-A
1 TTTTCAAA-TTCGCAACACGA
*
1470904 TTTTCCAAATTCGCAACGCGA
1 TTTT-CAAATTCGCAACACGA
* *
1470925 TTTCCAAATTCACAACACTGA
1 TTTTCAAATTCGCAACAC-GA
* *
1470946 ATTTCAAATTCGCAACTCGA
1 TTTTCAAATTCGCAACACGA
* * *
1470966 -TTTCTGAATTTGCAACTCGA
1 TTTTC-AAATTCGCAACACGA
* **
1470986 TTTTCGAATTCATAACACGAA
1 TTTTCAAATTCGCAACACG-A
*
1471007 TTTT-AATTTCGCAACA
1 TTTTCAAATTCGCAACA
1471023 AGTTGTATTT
Statistics
Matches: 95, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
19 4 0.04
20 58 0.61
21 33 0.35
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (20 bp):
TTTTCAAATTCGCAACACGA
Found at i:1470981 original size:61 final size:60
Alignment explanation
Indices: 1470885--1471022 Score: 152
Period size: 61 Copynumber: 2.3 Consensus size: 60
1470875 TAACCAACTT
1470885 TTTCAAATTTCGCAACACATTTTCCAAATTCGCAACGCGATTTCCAAATTCACAACACTGAA
1 TTTCAAA-TTCGCAACACATTTTCCAAATTCGCAACGCGATTTCCAAATTCACAACAC-GAA
* ** * * * * *
1470947 TTTCAAATTCGCAACTCGA-TTTCTGAATTTGCAACTCGATTTTCGAATTCATAACACGAA
1 TTTCAAATTCGCAACAC-ATTTTCCAAATTCGCAACGCGATTTCCAAATTCACAACACGAA
* *
1471007 TTTTAATTTCGCAACA
1 TTTCAAATTCGCAACA
1471023 AGTTGTATTT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
60 16 0.25
61 40 0.62
62 8 0.12
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.33
Consensus pattern (60 bp):
TTTCAAATTCGCAACACATTTTCCAAATTCGCAACGCGATTTCCAAATTCACAACACGAA
Found at i:1474589 original size:29 final size:29
Alignment explanation
Indices: 1474543--1474599 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
1474533 GCGATTTTTT
1474543 GTTGCCATTGTTGCGAAAGTCAAATTCGC
1 GTTGCCATTGTTGCGAAAGTCAAATTCGC
* *
1474572 GTTGCGATTGTTGTGAAAGTCAAATTCG
1 GTTGCCATTGTTGCGAAAGTCAAATTCG
1474600 AAACATGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (29 bp):
GTTGCCATTGTTGCGAAAGTCAAATTCGC
Found at i:1474628 original size:20 final size:20
Alignment explanation
Indices: 1474584--1474629 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
1474574 TGCGATTGTT
*
1474584 GTGAAAGTCAAATTCGAAAC
1 GTGAAAGTAAAATTCGAAAC
* * *
1474604 ATGAAAGTAAAATTTGCAAC
1 GTGAAAGTAAAATTCGAAAC
1474624 GTGAAA
1 GTGAAA
1474630 ATCGCAACGC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.22
Consensus pattern (20 bp):
GTGAAAGTAAAATTCGAAAC
Found at i:1476490 original size:21 final size:21
Alignment explanation
Indices: 1476464--1476555 Score: 78
Period size: 21 Copynumber: 4.4 Consensus size: 21
1476454 GTGAATCGGG
*
1476464 CTCTTGAATGGTGGGAGAGAC
1 CTCTTGAATGGTGGGAGGGAC
* ** *
1476485 CTCTTGAAAT-TTGACAGGGGC
1 CTCTTG-AATGGTGGGAGGGAC
*
1476506 CTCTTGAACGGTGGGAGGGAC
1 CTCTTGAATGGTGGGAGGGAC
* * * *
1476527 CTCTTGAACGATGAGAGGGGC
1 CTCTTGAATGGTGGGAGGGAC
1476548 CTCTTGAA
1 CTCTTGAA
1476556 CGATAGAAAG
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
20 2 0.04
21 51 0.91
22 3 0.05
ACGTcount: A:0.23, C:0.18, G:0.35, T:0.24
Consensus pattern (21 bp):
CTCTTGAATGGTGGGAGGGAC
Found at i:1476528 original size:42 final size:42
Alignment explanation
Indices: 1476464--1476557 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
1476454 GTGAATCGGG
* **
1476464 CTCTTGAATGGTGGGAGAGACCTCTTGAAATTTGACAGGGGC
1 CTCTTGAACGGTGGGAGAGACCTCTTGAAAGATGACAGGGGC
* * *
1476506 CTCTTGAACGGTGGGAGGGACCTCTTGAACGATGAGAGGGGC
1 CTCTTGAACGGTGGGAGAGACCTCTTGAAAGATGACAGGGGC
1476548 CTCTTGAACG
1 CTCTTGAACG
1476558 ATAGAAAGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.23
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGAGACCTCTTGAAAGATGACAGGGGC
Found at i:1476556 original size:21 final size:21
Alignment explanation
Indices: 1476500--1476582 Score: 105
Period size: 21 Copynumber: 4.0 Consensus size: 21
1476490 GAAATTTGAC
* *
1476500 AGGGGCCTCTTGAACGGTGGG
1 AGGGGCCTCTTGAACGATGAG
*
1476521 AGGGACCTCTTGAACGATGAG
1 AGGGGCCTCTTGAACGATGAG
1476542 AGGGGCCTCTTGAACGAT-AG
1 AGGGGCCTCTTGAACGATGAG
* *
1476562 AAAGGGCCTCTTGAATGATGA
1 -AGGGGCCTCTTGAACGATGA
1476583 TAGGTGAATC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
20 2 0.04
21 51 0.94
22 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.36, T:0.20
Consensus pattern (21 bp):
AGGGGCCTCTTGAACGATGAG
Done.