genome.fa.s8927.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008927.1 Hibiscus syriacus cultivar Beakdansim tig00112232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138019

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3643--3681	19	2.1	19	100	0	78	38	10	10	41	1.73
7580--7609	6	5.2	6	92	8	53	66	0	0	33	0.92
11845--11905	21	2.9	21	95	0	104	9	24	39	26	1.86
11843--11947	21	5.0	21	80	10	81	14	22	38	24	1.92
19016--19067	20	2.4	22	75	12	54	38	1	0	59	1.08
22845--22893	26	1.9	25	87	4	71	75	2	2	20	1.00
22917--23268	37	9.5	35	73	19	231	46	5	3	43	1.46
22914--23050	70	2.0	69	81	11	163	43	6	4	45	1.50
22985--23286	37	8.0	36	77	12	254	45	6	3	44	1.47
26167--26195	2	14.5	2	100	0	58	48	0	0	51	1.00
39075--39105	6	5.2	6	100	0	62	16	35	0	48	1.46
40806--40840	2	17.5	2	100	0	70	48	0	0	51	1.00
44766--44872	34	3.3	31	66	23	83	42	4	6	45	1.50
44754--44895	68	2.1	68	96	2	259	45	4	4	45	1.44
61844--61937	24	3.7	24	70	20	82	45	7	1	45	1.38
63898--63967	31	2.3	31	87	5	97	37	11	27	24	1.89
70630--70657	12	2.3	12	100	0	56	14	25	42	17	1.87
70625--70673	19	2.6	19	78	18	57	20	26	36	16	1.93
70661--70699	19	2.1	19	90	0	60	23	28	28	20	1.99
73501--73550	17	3.1	17	68	26	54	36	6	12	46	1.66
73986--74140	76	2.0	76	93	2	267	50	6	9	32	1.60
74192--74251	31	1.9	31	86	0	84	51	8	8	31	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90350--90377	3	9.3	3	100	0	56	67	0	0	32	0.91
91804--91851	14	3.4	14	85	0	60	25	0	20	54	1.45
92033--92081	26	1.9	26	87	4	73	57	4	2	36	1.30
92701--92738	19	2.0	19	85	10	51	68	0	0	31	0.90
96955--97343	20	19.5	20	86	4	498	34	26	19	20	1.96
98017--98063	24	2.0	24	87	8	69	25	14	21	38	1.92
98238--98262	12	2.1	12	100	0	50	72	0	28	0	0.86
100569--100856	19	16.4	19	77	17	320	47	18	20	14	1.83
100569--100823	33	7.2	34	79	14	222	47	18	20	14	1.83
100597--100823	52	4.2	53	90	4	334	47	17	20	14	1.83
100636--100888	123	2.1	122	87	10	365	47	17	19	15	1.83
100636--100878	33	6.9	34	78	16	223	46	17	20	15	1.83
100597--100856	52	4.9	54	88	8	262	47	17	20	14	1.83
100885--100986	19	5.6	19	85	12	151	14	23	17	44	1.86
101093--101129	14	2.6	14	91	0	65	45	21	0	32	1.52
101110--101180	37	1.9	37	97	0	133	52	16	1	29	1.53
101110--101189	37	2.2	37	90	0	124	53	17	1	27	1.51
103053--103109	14	3.7	14	77	20	60	45	22	21	10	1.82
103034--103126	33	2.8	33	95	0	168	47	21	20	10	1.80
102997--103131	19	7.6	19	76	16	128	45	23	19	11	1.82
103127--103255	19	7.3	19	75	17	125	8	17	28	45	1.77
103127--103218	33	2.8	33	93	3	150	7	18	28	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103299--103678	93	4.1	93	99	0	753	46	18	12	22	1.83
103299--103678	185	2.0	186	99	0	753	46	18	12	22	1.83
104246--104347	19	5.6	19	84	13	151	44	17	23	14	1.86
104376--104682	19	17.4	19	79	16	358	14	20	18	47	1.83
104376--104615	71	3.4	71	83	11	355	15	20	17	47	1.83
104344--104682	142	2.4	136	89	6	504	14	20	18	46	1.83
104376--104654	52	5.2	52	90	6	354	14	20	17	47	1.83
106985--107009	12	2.1	12	100	0	50	0	28	0	72	0.86
107184--107230	24	2.0	24	87	8	69	38	21	14	25	1.92
107904--108272	20	18.5	20	86	4	458	20	18	26	34	1.96
113961--114011	14	3.7	14	72	15	52	50	1	3	43	1.31
127829--127885	29	1.9	29	82	10	71	47	10	7	35	1.65
130761--130799	20	2.0	20	89	0	60	48	0	7	43	1.31
133977--134026	22	2.4	21	80	9	57	28	2	32	38	1.68
136307--136414	53	2.1	52	91	5	173	34	20	11	34	1.88
136620--136719	2	53.5	2	84	13	142	48	1	51	0	1.07
137281--137379	31	3.2	31	82	5	130	42	14	18	25	1.87

Tables:   1

The End!