genome.fa.s8928.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008928.1 Hibiscus syriacus cultivar Beakdansim tig00112233_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39296

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1771--2057	19	16.4	19	77	18	311	47	18	20	14	1.83
1771--2001	33	6.7	33	73	15	132	46	18	19	14	1.83
1771--1998	52	4.4	52	85	8	227	46	18	20	14	1.83
1837--2089	123	2.1	122	87	10	365	47	17	19	15	1.83
1837--2079	33	6.9	34	78	16	223	46	17	20	15	1.83
1802--2057	52	4.8	54	88	8	254	47	17	20	14	1.83
2086--2187	19	5.6	19	85	12	151	14	23	17	44	1.86
2294--2330	14	2.6	14	91	0	65	45	21	0	32	1.52
2325--2397	12	6.0	12	67	20	53	57	16	1	24	1.47
2311--2383	38	1.9	38	97	0	137	53	16	1	28	1.51
4241--4297	14	3.7	14	77	20	60	45	22	21	10	1.82
4222--4314	33	2.8	33	95	0	168	47	21	20	10	1.80
4185--4319	19	7.6	19	76	16	128	45	23	19	11	1.82
4315--4442	19	7.3	19	74	16	123	8	17	28	45	1.78
4315--4406	33	2.8	33	93	3	150	7	18	28	45	1.76
4486--4864	92	4.1	93	98	1	744	46	18	12	22	1.83
4486--4864	185	2.0	185	98	1	742	46	18	12	22	1.83
5429--5530	19	5.6	19	84	13	151	44	17	23	14	1.86
5537--5864	33	9.5	33	78	15	210	14	20	18	46	1.84
5559--5864	19	17.4	19	78	17	349	14	20	18	47	1.83
5559--5836	52	5.2	52	90	6	361	14	20	17	47	1.83
8362--8408	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9081--9449	20	18.5	20	86	4	458	20	18	26	34	1.96
15147--15197	14	3.7	14	72	15	52	50	1	3	43	1.31
28959--28993	16	2.1	18	89	10	56	28	0	0	71	0.86
29106--29162	29	1.9	29	82	10	71	47	10	7	35	1.65
32054--32092	20	2.0	20	89	0	60	48	0	7	43	1.31
35278--35327	22	2.4	21	80	9	57	28	2	32	38	1.68
37603--37710	53	2.1	52	91	5	173	34	20	11	34	1.88
37916--38018	2	51.5	2	98	0	197	49	0	49	0	1.07
38573--38675	29	3.5	31	77	11	117	42	14	18	24	1.87

Tables:   1

The End!