genome.fa.s893.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000893.1 Hibiscus syriacus cultivar Beakdansim tig00001750_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  734264

Tables:   1   2   3   

This is table  1  of  3  ( 359 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73--119	24	2.0	24	83	8	60	57	14	2	25	1.49
3357--3399	19	2.3	19	83	0	59	65	0	16	18	1.28
10116--10162	24	2.0	24	83	8	60	57	14	2	25	1.49
11531--11557	2	13.5	2	100	0	54	51	0	0	48	1.00
12075--12123	21	2.4	21	79	3	55	28	16	2	53	1.54
12346--12797	149	3.0	149	93	0	746	36	21	14	27	1.92
14145--14300	64	2.4	63	81	5	170	26	20	17	35	1.95
17219--17273	21	2.6	21	80	5	58	29	16	1	52	1.54
17235--17278	21	2.1	21	83	8	54	34	18	0	47	1.49
17491--17942	149	3.0	149	94	0	762	36	21	15	27	1.93
19291--19451	64	2.5	63	82	5	180	26	19	18	35	1.95
32669--32741	29	2.5	29	100	0	146	63	13	12	10	1.53
32695--32748	16	3.6	16	67	23	53	62	16	9	11	1.52
39624--39686	32	2.0	32	90	0	99	33	11	14	41	1.81
42078--42116	8	4.9	8	81	12	53	66	0	0	33	0.92
42201--42240	3	13.3	3	83	0	53	62	5	0	32	1.17
44080--45085	85	11.8	85	87	2	1308	25	17	20	35	1.95
49016--49071	17	3.5	15	80	9	58	75	3	17	3	1.10
49024--49087	25	2.5	26	83	14	80	70	4	17	7	1.29
56428--56469	8	5.2	8	77	11	50	83	0	9	7	0.81
56677--56738	24	2.6	24	97	0	115	38	19	17	24	1.93
74570--74651	38	2.2	38	100	0	164	23	20	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75043--75090	2	24.5	2	95	4	89	50	0	0	50	1.00
75817--75848	12	2.6	13	85	14	50	43	0	15	40	1.47
75948--75997	18	2.8	18	79	8	59	48	0	8	44	1.32
76006--76032	12	2.2	12	100	0	54	33	0	14	51	1.43
76533--76597	21	2.7	23	75	18	62	47	3	1	47	1.27
76539--76596	21	2.7	22	84	5	75	50	3	0	46	1.18
76641--76686	14	3.4	14	81	6	58	54	0	0	45	0.99
76645--76690	13	3.5	13	85	5	56	56	0	0	43	0.99
76647--76696	14	3.1	16	80	16	59	62	0	0	38	0.96
79780--80165	193	2.0	193	98	1	747	26	16	15	41	1.88
91237--91285	22	2.2	23	85	3	64	46	24	2	26	1.63
92389--92464	40	1.9	40	88	0	116	11	26	39	22	1.88
92707--92732	13	2.0	13	100	0	52	30	0	0	69	0.89
93512--93700	91	2.1	91	100	0	378	30	24	19	25	1.98
96117--96154	17	2.2	17	100	0	76	5	26	44	23	1.74
97788--97824	17	2.2	17	90	9	58	64	0	0	35	0.94
97803--97852	12	4.2	12	80	10	57	70	2	0	28	0.99
97872--97914	20	2.2	20	86	0	59	37	0	32	30	1.58
97872--97914	10	4.3	10	78	0	50	37	0	32	30	1.58
101736--101786	20	2.5	20	81	6	59	37	5	17	39	1.74
101814--101861	20	2.4	20	92	0	78	25	20	29	25	1.99
105294--105339	20	2.3	20	88	3	67	28	23	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105680--105744	34	1.9	34	87	6	96	32	12	30	24	1.92
108065--108114	20	2.5	20	86	0	73	38	22	16	24	1.93
108081--108195	41	2.9	40	78	12	121	36	24	12	26	1.91
108123--108215	20	4.6	20	81	7	98	32	26	11	29	1.92
108059--108215	40	3.9	40	74	10	124	34	24	12	28	1.92
108105--108223	41	2.9	41	81	6	118	34	25	11	28	1.91
108208--108255	18	2.5	20	86	10	73	27	22	14	35	1.93
108973--109006	12	2.8	12	90	0	50	55	29	0	14	1.40
109132--109185	24	2.2	24	86	0	72	24	16	18	40	1.90
111775--111839	20	3.2	20	88	0	85	47	16	18	16	1.83
111897--111961	20	3.2	20	93	0	103	20	15	24	40	1.91
113426--113496	21	3.5	20	75	7	72	18	19	39	22	1.92
113644--113691	12	4.1	12	81	2	62	66	2	2	29	1.14
113644--113689	4	11.5	4	80	0	56	67	2	2	28	1.14
113907--113959	21	2.5	21	87	0	79	33	33	13	18	1.90
115433--115486	20	2.7	19	83	8	72	46	22	16	14	1.84
115493--115549	20	2.8	20	97	0	105	15	15	21	47	1.82
115883--115941	22	2.7	22	94	0	100	20	20	42	16	1.89
116045--116086	19	2.2	19	83	8	50	40	14	16	28	1.88
121023--121355	170	1.9	171	90	2	535	28	18	20	32	1.97
121213--121602	132	3.0	133	84	3	472	29	19	20	30	1.97
121343--121530	44	4.3	44	69	11	98	31	18	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122228--122292	20	3.2	20	73	4	67	26	21	26	26	2.00
122236--122341	42	2.5	42	86	1	133	27	26	21	24	1.99
122638--122843	42	4.9	42	83	8	256	28	29	13	28	1.94
122636--122857	43	5.2	42	82	9	263	28	28	13	28	1.95
122641--122843	85	2.4	85	88	3	302	28	30	13	28	1.94
124501--124609	8	12.8	8	70	17	60	6	16	0	76	1.04
124501--124609	17	6.3	17	70	13	62	6	16	0	76	1.04
124500--124609	9	11.6	9	71	13	53	6	16	0	76	1.04
124463--124594	25	4.9	26	76	13	115	6	18	0	74	1.07
124540--124615	17	5.1	16	71	22	67	9	18	0	72	1.10
124564--124615	16	3.1	17	72	16	54	9	17	0	73	1.09
124531--124601	26	2.8	26	81	14	94	7	16	0	76	1.00
124565--124630	34	2.0	33	85	8	89	9	19	0	71	1.12
124935--125043	53	2.1	53	96	0	200	36	12	23	26	1.91
126959--127027	21	3.5	20	70	22	65	23	24	24	27	2.00
126935--127035	38	2.7	38	85	0	139	25	25	19	28	1.99
128769--128843	31	2.4	31	93	0	132	41	17	2	38	1.63
131747--131831	22	4.0	22	69	17	70	70	7	1	21	1.17
135504--135537	2	17.0	2	100	0	68	50	0	0	50	1.00
135757--135810	26	2.1	26	92	0	90	38	9	20	31	1.84
135760--135822	26	2.4	26	86	0	72	41	12	17	28	1.86
136840--136876	4	9.8	4	88	5	51	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137907--137956	16	3.2	16	70	16	50	68	0	24	8	1.16
138902--138937	2	18.0	2	100	0	72	50	0	0	50	1.00
139125--139175	24	2.1	24	100	0	102	37	11	25	25	1.90
139248--139341	29	3.2	28	81	11	100	35	8	14	41	1.77
139329--139383	24	2.3	23	81	6	56	40	3	3	52	1.36
139424--139524	28	3.5	28	77	7	85	40	4	11	42	1.63
142144--142183	20	2.0	20	95	0	71	32	10	17	40	1.83
143765--143813	13	3.8	13	83	0	62	55	16	16	12	1.70
145217--145321	43	2.4	44	84	6	133	11	13	38	37	1.81
145432--145478	18	2.6	18	83	6	51	23	2	27	46	1.63
152115--152232	47	2.6	47	84	7	147	26	23	17	32	1.97
152461--152504	3	14.3	3	85	4	52	38	2	0	59	1.10
153404--153440	12	3.1	13	88	11	53	48	0	13	37	1.43
153870--153957	30	2.9	31	77	3	90	17	12	10	60	1.59
158187--158214	11	2.5	11	100	0	56	17	28	35	17	1.93
159173--159540	180	2.0	184	95	4	665	37	19	6	36	1.79
159826--160128	148	2.0	155	95	4	557	37	18	7	36	1.79
162505--162538	17	2.1	16	88	5	50	76	0	8	14	1.01
166338--166381	21	2.1	21	87	4	63	68	0	13	18	1.22
172523--172556	17	2.1	16	88	5	50	76	0	8	14	1.01
183217--183255	21	1.9	20	94	5	69	43	10	10	35	1.73
182889--183555	200	3.3	199	86	5	880	32	13	13	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183345--183383	21	1.9	19	85	10	51	33	12	7	46	1.71
183417--183458	21	2.0	22	86	9	61	42	7	11	38	1.69
185016--185062	6	7.8	6	85	0	58	51	6	8	34	1.58
185016--185062	12	3.9	12	88	0	67	51	6	8	34	1.58
185016--185066	18	2.8	18	84	0	66	54	5	7	31	1.53
190694--190730	14	2.6	14	95	0	65	40	45	0	13	1.43
191020--191484	200	2.3	198	81	6	507	31	15	12	40	1.84
191525--191579	20	2.8	20	88	0	83	23	16	14	45	1.84
191528--191625	20	4.9	19	68	16	56	27	18	12	41	1.86
193227--193307	23	3.5	22	75	9	74	49	12	24	13	1.76

Tables:   1   2   3