Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008932.1 Hibiscus syriacus cultivar Beakdansim tig00112243_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 464758
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:7715 original size:53 final size:53
Alignment explanation
Indices: 7618--7775 Score: 237
Period size: 53 Copynumber: 2.9 Consensus size: 53
7608 AGGTTTCCCA
* *
7618 ACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
1 ACGATTGTTGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
7673 ACGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATA-GGAGGCAGAC
1 ACGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGA-GCAGAC
* * *
7726 GCGATCGTTGAAGATTGTGGGTCTTATACTCTCTAAAGAAATAGGGAGCA
1 ACGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCA
7776 TACTCGTTTG
Statistics
Matches: 96, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
52 3 0.03
53 72 0.75
54 4 0.04
55 17 0.18
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (53 bp):
ACGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
Found at i:7813 original size:51 final size:50
Alignment explanation
Indices: 7750--8202 Score: 351
Period size: 51 Copynumber: 8.6 Consensus size: 50
7740 TTGTGGGTCT
* *
7750 TATACTCTCTAAAGAAATAGGGAGC-ATACTCGTTTGAAGATTTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGA-AC-CGTTTGAAGATTTTCGAGTTC
* *
7801 TATACTCCCTAAAGAAAGAGGGAGCGAACCTGTTAGAAGATGTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACC-GTTTGAAGATTTTCGAGTTC
* * ** *
7852 CATACTCCCT--AGATAA-AGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTC
1 TATACTCCCTAAAGA-AAGAGGGAGCGAA-CCGT---TTGAAGATTTTCGAGTTC
* *
7904 TATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGCAGAAGATTATTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAA-CCGTTT---GAAGATT-TTCGAGTTC
* * * * *
7959 CATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAAGAAGATATTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACC-GTTT---GAAGATTTTCGAGTTC
* *
8013 TATACTTCCTGAAAGAAAGAGGGAGCGAACCGTTTGAAGATGTTCGAGTTC
1 TATACTCCCT-AAAGAAAGAGGGAGCGAACCGTTTGAAGATTTTCGAGTTC
* **
8064 TATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATGTTT-GAGTTC
1 TATACTCCCT-AAAGAAAGAGGGAGCGAA-CCGT---TTGAAGAT-TTTCGAGTTC
* * *
8119 TATACTCCCTAGAGAAAGA-GGAGCGAACTCGTTTGCAAATGATTGCTCAAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAAC-CGTTTG--AA-GATT-TTCGAGTTC
* * * *
8173 TATACTCCATGAAGGAAGAGGGAACGAACC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACC
8203 CGTTGACAGA
Statistics
Matches: 335, Mismatches: 39, Indels: 53
0.78 0.09 0.12
Matches are distributed among these distances:
49 14 0.04
50 6 0.02
51 96 0.29
52 35 0.10
53 17 0.05
54 74 0.22
55 91 0.27
56 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (50 bp):
TATACTCCCTAAAGAAAGAGGGAGCGAACCGTTTGAAGATTTTCGAGTTC
Found at i:7869 original size:106 final size:104
Alignment explanation
Indices: 7759--8146 Score: 340
Period size: 106 Copynumber: 3.7 Consensus size: 104
7749 TTATACTCTC
**
7759 TAAAGAAATAGGGAGC-ATACTCGTTTGAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGG
1 TAAAGAAA-AGGGAGCGA-AC-CGTAAGAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGG
7823 AGCGAACCTGTTAGAAGATGTTCGAGTTCCATACTCCCTAGA
63 AGCGAACCTGTTAGAAGATGTTCGAGTTCCATACTCCCTAGA
* * *
7865 T-----AAAGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGG
1 TAAAGAAAAGGGAGCGAA-CCGT---AAGAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGG
*
7925 GAGCGAACCCAT-TTGCAGAAGATTATTCGAGTTCCATACTCCCTAGA
62 GAGCGAA-CC-TGTT--AGAAGA-TGTTCGAGTTCCATACTCCCTAGA
* * *
7972 TAAAG---AGGGAACGAACCTGTTTGAAGAAGATATTCGAGTTCTATACTTCCTGAAAGAAAGAG
1 TAAAGAAAAGGGAGCGAACC-G--T-AAGAAGATTTTCGAGTTCTATACTCCCT-AAAGAAAGAG
* * *
8034 GGAGCGAACC-GTTTGAAGATGTTCGAGTTCTATACTTCCT-G-
61 GGAGCGAACCTGTTAGAAGATGTTCGAGTTCCATACTCCCTAGA
*
8075 -AAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATGTTT-GAGTTCTATACTCCCTAGAGAAAGA
1 TAAAGAAA-AGGGAGCGAA-CCGT---AAGAAGAT-TTTCGAGTTCTATACTCCCTAAAGAAAGA
8138 -GGAGCGAAC
60 GGGAGCGAAC
8147 TCGTTTGCAA
Statistics
Matches: 238, Mismatches: 17, Indels: 56
0.77 0.05 0.18
Matches are distributed among these distances:
100 10 0.04
101 4 0.02
102 4 0.02
103 42 0.18
104 15 0.06
105 27 0.11
106 46 0.19
107 28 0.12
108 4 0.02
109 40 0.17
110 17 0.07
111 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (104 bp):
TAAAGAAAAGGGAGCGAACCGTAAGAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGC
GAACCTGTTAGAAGATGTTCGAGTTCCATACTCCCTAGA
Found at i:7969 original size:55 final size:54
Alignment explanation
Indices: 7785--8214 Score: 436
Period size: 55 Copynumber: 8.1 Consensus size: 54
7775 ATACTCGTTT
* * *
7785 GAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTG-TT--A
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
* * * **
7836 GAAGATGTTCGAGTTCCATACTCCCTAGA-TAA-AGGGAACGAACCCGTAAGAA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
* *
7888 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGCA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
* * * * *
7942 GAAGATTATTCGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAA
1 GAAGA-TGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
* * *
7997 GAAGATATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAA-CCGTTT---
1 GAAGATGTTCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTGAA
* * **
8048 GAAGATGTTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAA
1 GAAGATGTTCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTGAA
* *
8103 GAAGATGTTTGAGTTCTATACTCCCTAGAGAAAGA-GGAGCGAACTCGTTTGCAA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG-AA
* * * * * *
8157 -ATGATTGCTCAAGTTCTATACTCCAT-GAAGGAAGAGGGAACGAACCCG-TTGACA
1 GAAGA-TGTTCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTGA-A
8211 GAAG
1 GAAG
8215 GTTTTTCAAG
Statistics
Matches: 316, Mismatches: 46, Indels: 30
0.81 0.12 0.08
Matches are distributed among these distances:
49 12 0.04
50 2 0.01
51 70 0.22
52 33 0.10
53 20 0.06
54 81 0.26
55 98 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
Found at i:8174 original size:160 final size:159
Alignment explanation
Indices: 7785--8202 Score: 423
Period size: 160 Copynumber: 2.6 Consensus size: 159
7775 ATACTCGTTT
* * * *
7785 GAAGATT-TTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTG-TT--AGAAGATGTTC
1 GAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAACGAACCTGTTTGAAGAAGATATTC
* * * **
7846 GAGTTCCATACTCCCT--AGATAA-AGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTCTATA
66 AAGTTCTATACTCCATGAAGA-AAGAGGGAACGAA-CCGT---TTGAAGATGTTCGAGTTCTATA
* ** *
7908 CTCCCTAGAGAAAGAGGGAGCGAACCCATTTGCA
126 CTCCCTAAAGAAAGAGGGAGCGAACCCATAAGAA
*
7942 GAAGATTATTCGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAAGAAGATATTC
1 GAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAACGAACCTGTTTGAAGAAGATATTC
* * *
8007 GAGTTCTATACTTCC-TGAAAGAAAGAGGGAGCGAACCGTTTGAAGATGTTCGAGTTCTATACTT
66 AAGTTCTATAC-TCCATG-AAGAAAGAGGGAACGAACCGTTTGAAGATGTTCGAGTTCTATACTC
*
8071 CCTGAAAGAAAGAGGGAGCGAACCCGTAAGAA
129 CCT-AAAGAAAGAGGGAGCGAACCCATAAGAA
* * *
8103 GAAGATGT-TT-GAGTTCTATACTCCCTAGAGAAAGA-GGAGCGAA-CTCGTTTGCAA-ATGAT-
1 GAAGAT-TATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAACGAACCT-GTTTG-AAGAAGATA
*
8162 TGCTCAAGTTCTATACTCCATGAAGGAAGAGGGAACGAACC
63 T--TCAAGTTCTATACTCCATGAAGAAAGAGGGAACGAACC
8203 CGTTGACAGA
Statistics
Matches: 223, Mismatches: 22, Indels: 30
0.81 0.08 0.11
Matches are distributed among these distances:
157 7 0.03
158 40 0.18
159 38 0.17
160 64 0.29
161 52 0.23
162 4 0.02
163 6 0.03
164 12 0.05
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (159 bp):
GAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAACGAACCTGTTTGAAGAAGATATTC
AAGTTCTATACTCCATGAAGAAAGAGGGAACGAACCGTTTGAAGATGTTCGAGTTCTATACTCCC
TAAAGAAAGAGGGAGCGAACCCATAAGAA
Found at i:11569 original size:30 final size:29
Alignment explanation
Indices: 11532--11608 Score: 111
Period size: 30 Copynumber: 2.6 Consensus size: 29
11522 ATTCAAACAT
11532 GGAGGTCTAGGCGTCTTTAACACAATGTGCA
1 GGAGGTCTAGGCGTCTTTAACACAAT-T-CA
11563 -GAGGTCTAGGCGTCTTTAACACAATTCA
1 GGAGGTCTAGGCGTCTTTAACACAATTCA
*
11591 TGGAGGTCTCGGCGTCTT
1 -GGAGGTCTAGGCGTCTT
11609 CAAATTCAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
28 2 0.05
29 1 0.02
30 40 0.93
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (29 bp):
GGAGGTCTAGGCGTCTTTAACACAATTCA
Found at i:15085 original size:14 final size:14
Alignment explanation
Indices: 15066--15282 Score: 185
Period size: 14 Copynumber: 15.3 Consensus size: 14
15056 CAAAATGATT
15066 TAATGATTTAATAA
1 TAATGATTTAATAA
* **
15080 TAATGAGTTAATTT
1 TAATGATTTAATAA
15094 TAATGATTTAATAA
1 TAATGATTTAATAA
* *
15108 TAATTGGTAGTTAA-ATT
1 TAA-T-G-ATTTAATA-A
15125 TAATGATTTAATAA
1 TAATGATTTAATAA
* *
15139 TAATTATTTAACT-T
1 TAATGATTTAA-TAA
* *
15153 TAATAATTTAACT-T
1 TAATGATTTAA-TAA
15167 TAATGATTTAATAA
1 TAATGATTTAATAA
* *
15181 TAATAATTTAACT-T
1 TAATGATTTAA-TAA
15195 TAATGATTTAATAA
1 TAATGATTTAATAA
*
15209 TAATGATTTAACT-T
1 TAATGATTTAA-TAA
15223 TAATGATTTAATAA
1 TAATGATTTAATAA
* *
15237 TAATAATTTAACT-T
1 TAATGATTTAA-TAA
15251 TAATGATTTAATAA
1 TAATGATTTAATAA
15265 TAATGATTTAATAA
1 TAATGATTTAATAA
15279 TAAT
1 TAAT
15283 AATGATATTC
Statistics
Matches: 165, Mismatches: 25, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
13 4 0.02
14 143 0.87
15 7 0.04
16 3 0.02
17 8 0.05
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:15170 original size:28 final size:28
Alignment explanation
Indices: 15153--15275 Score: 228
Period size: 28 Copynumber: 4.4 Consensus size: 28
15143 TATTTAACTT
15153 TAATAATTTAACTTTAATGATTTAATAA
1 TAATAATTTAACTTTAATGATTTAATAA
15181 TAATAATTTAACTTTAATGATTTAATAA
1 TAATAATTTAACTTTAATGATTTAATAA
*
15209 TAATGATTTAACTTTAATGATTTAATAA
1 TAATAATTTAACTTTAATGATTTAATAA
15237 TAATAATTTAACTTTAATGATTTAATAA
1 TAATAATTTAACTTTAATGATTTAATAA
*
15265 TAATGATTTAA
1 TAATAATTTAA
15276 TAATAATAAT
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 92 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (28 bp):
TAATAATTTAACTTTAATGATTTAATAA
Found at i:15276 original size:42 final size:42
Alignment explanation
Indices: 15080--15285 Score: 204
Period size: 42 Copynumber: 4.8 Consensus size: 42
15070 GATTTAATAA
* ** * * *
15080 TAATGAGTTAATTTTAATGATTTAATAATAATTGGTAGTTAAATT
1 TAATGATTTAATAATAATGATTTAATAATAA-T--AATTTAACTT
* *
15125 TAATGATTTAATAATAATTATTTAACT-TTAATAATTTAACTT
1 TAATGATTTAATAATAATGATTTAA-TAATAATAATTTAACTT
* * * *
15167 TAATGATTTAATAATAATAATTTAACT-TTAATGATTTAA-TAA
1 TAATGATTTAATAATAATGATTTAA-TAATAATAATTTAACT-T
*
15209 TAATGATTTAACT-TTAATGATTTAATAATAATAATTTAACTT
1 TAATGATTTAA-TAATAATGATTTAATAATAATAATTTAACTT
15251 TAATGATTTAATAATAATGATTTAATAATAATAAT
1 TAATGATTTAATAATAATGATTTAATAATAATAAT
15286 GATATTCGAT
Statistics
Matches: 138, Mismatches: 17, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
41 3 0.02
42 107 0.78
43 2 0.01
44 1 0.01
45 24 0.17
46 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (42 bp):
TAATGATTTAATAATAATGATTTAATAATAATAATTTAACTT
Found at i:21651 original size:3 final size:3
Alignment explanation
Indices: 21639--21673 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
21629 TGCCTTTTAA
21639 TAT T-T TAT TAT TAT TAT TAT TAAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TA
21674 ATTTATATGC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:21666 original size:13 final size:13
Alignment explanation
Indices: 21635--21676 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
21625 GTCATGCCTT
21635 TTAA-TATT-TTA
1 TTAATTATTATTA
21646 TT-ATTATTATTA
1 TTAATTATTATTA
21658 TTAATTATTATTA
1 TTAATTATTATTA
21671 TTAATT
1 TTAATT
21677 TATATGCAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 6 0.21
12 5 0.18
13 16 0.57
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTAATTATTATTA
Found at i:23327 original size:8 final size:8
Alignment explanation
Indices: 23274--23339 Score: 69
Period size: 8 Copynumber: 8.1 Consensus size: 8
23264 GCATAATGCA
*
23274 TATATATA
1 TATATATG
*
23282 TATATATA
1 TATATATG
*
23290 TATATATA
1 TATATATG
*
23298 TATATATA
1 TATATATG
23306 TATATATG
1 TATATATG
23314 TATATATG
1 TATATATG
* *
23322 TTTATACCG
1 TATATA-TG
23331 TATATATG
1 TATATATG
23339 T
1 T
23340 TTGTATTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
8 46 0.88
9 6 0.12
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (8 bp):
TATATATG
Found at i:23337 original size:2 final size:2
Alignment explanation
Indices: 23273--23320 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
23263 TGCATAATGC
*
23273 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23315 AT AT AT
1 AT AT AT
23321 GTTTATACCG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33526 original size:31 final size:31
Alignment explanation
Indices: 33481--33574 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 31
33471 AATTCCTAAA
* * ** *
33481 ATACTACTGCATTATCTAAATATGAACTTGAC
1 ATACTA-TACATTATCTTAATACAAACCTGAC
*
33513 ATACTATACATTATCTTAATGCAAACCTGAC
1 ATACTATACATTATCTTAATACAAACCTGAC
*
33544 ATACTGTACATTATCTTAATACAAACCTGAC
1 ATACTATACATTATCTTAATACAAACCTGAC
33575 TAGTATATGG
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
31 48 0.89
32 6 0.11
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.33
Consensus pattern (31 bp):
ATACTATACATTATCTTAATACAAACCTGAC
Found at i:35482 original size:24 final size:24
Alignment explanation
Indices: 35450--35518 Score: 138
Period size: 24 Copynumber: 2.9 Consensus size: 24
35440 GCATGATATG
35450 GTACATAGATGTTTTATACATCGT
1 GTACATAGATGTTTTATACATCGT
35474 GTACATAGATGTTTTATACATCGT
1 GTACATAGATGTTTTATACATCGT
35498 GTACATAGATGTTTTATACAT
1 GTACATAGATGTTTTATACAT
35519 TAAATGGAAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (24 bp):
GTACATAGATGTTTTATACATCGT
Found at i:40799 original size:28 final size:28
Alignment explanation
Indices: 40767--40851 Score: 67
Period size: 28 Copynumber: 3.2 Consensus size: 28
40757 TAGGACTTTC
40767 AATTGTTCGAGTTCTAGTCCCTGAAGAA
1 AATTGTTCGAGTTCTAGTCCCTGAAGAA
* *
40795 AATTG---GA---C-AGACCCGTAGGAAGAT
1 AATTGTTCGAGTTCTAGTCCC-T--GAAGAA
*
40819 TATTGTTCGAGTTCTAGTCCCTGAAGAA
1 AATTGTTCGAGTTCTAGTCCCTGAAGAA
40847 AATTG
1 AATTG
40852 GGCAGTCTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 20
0.61 0.09 0.30
Matches are distributed among these distances:
21 5 0.12
22 2 0.05
24 9 0.22
25 2 0.05
27 2 0.05
28 14 0.34
30 2 0.05
31 5 0.12
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (28 bp):
AATTGTTCGAGTTCTAGTCCCTGAAGAA
Found at i:40826 original size:52 final size:52
Alignment explanation
Indices: 40768--40892 Score: 205
Period size: 52 Copynumber: 2.4 Consensus size: 52
40758 AGGACTTTCA
40768 ATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGAAGATT
* * *
40820 ATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGAAGATT
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGAAGATT
* *
40872 ATCGTTCGAGTTCTACTCCCT
1 ATTGTTCGAGTTCTAGTCCCT
40893 AGAGAAAGAG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (52 bp):
ATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGAAGATT
Found at i:40952 original size:54 final size:52
Alignment explanation
Indices: 40876--41022 Score: 174
Period size: 54 Copynumber: 2.8 Consensus size: 52
40866 AAGATTATCG
*
40876 TTCGAGTT-C-TACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAATATT-
1 TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCG--T-AAGAAGATTA
* *
40928 TTCGAGTTCCATACTTCCTAGAGAAAGAGGGAGTGAACCCCGTAAGAAGATTA
1 TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAA-CCCGTAAGAAGATTA
* * *
40981 TTCGAGTTCTATACTGCCTGAAAGAAAGAGGGAGCGAACCCG
1 TTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCG
41023 ATTGTTGAAG
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
52 16 0.19
53 23 0.28
54 40 0.48
55 4 0.05
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (52 bp):
TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGATTA
Found at i:41142 original size:55 final size:55
Alignment explanation
Indices: 40973--41419 Score: 400
Period size: 55 Copynumber: 8.2 Consensus size: 55
40963 AACCCCGTAA
* * *
40973 GAAGATTATTCGAGT-TCTATACTGC-CTGAAAGAAAGAGGGAGC-GAACCCGATTGTT
1 GAAGATTGTTCGAGTCT-TATACT-CTCTG-AAGAAATAGGGAGCAG-ACACGATTGTT
* *
41029 GAAGATTGTTCGAGTCTTATACTCTCTATGAAGAAATAGGGAGTAGACACGACTGTT
1 GAAGATTGTTCGAGTCTTATACTCTC--TGAAGAAATAGGGAGCAGACACGATTGTT
*
41086 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
* *
41141 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGTTTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
* * * * *
41196 GAAGGTTGTTCAAGTCATATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTG-TT
* * * *
41252 GAAGA---TT-GAGTCCTATACTCTCTGAAGGAATGGGGAGCGGACAC-ATTTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGA-TTGTT
* * * * * ** *
41303 GAAGA-T-TT--AGTCCTATACTCTCTGAAGGAATAGAGAACGGACTTG-TTTTAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGT-T
* * * * * * * * *
41354 GAAGATTGTTTGAGTTTTATACTCCCTGAA-ACAAAAGGGAGCAAACCCAATGGTC
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGA-AATAGGGAGCAGACACGATTGTT
41409 GAAGATTGTTC
1 GAAGATTGTTC
41420 AAAGAAGAGG
Statistics
Matches: 331, Mismatches: 44, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
50 3 0.01
51 44 0.13
52 39 0.12
53 4 0.01
55 161 0.49
56 29 0.09
57 48 0.15
58 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
Found at i:41395 original size:158 final size:161
Alignment explanation
Indices: 41024--41395 Score: 371
Period size: 158 Copynumber: 2.3 Consensus size: 161
41014 GCGAACCCGA
* * * * ** **
41024 TTGTTGAAGATTGTTCGAGTCTTATACTCTCTATGAAGAAATAGGGAGTAGACACGACTG-TTGA
1 TTGTTGAAGATTGTTCAAGTCATATACTC-C-CTGAAGAAAAAGGGAGCGGACACGTTTGATTGA
*
41088 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTCG
64 AGA---TT-GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTC-
* * *
41153 AGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGT
124 AGTCCTATACTCTCTGAAGGAATAGAGAACAGACACGT
* * *
41191 TTGTTGAAGGTTGTTCAAGTCATATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGATTGAAG
1 TTGTTGAAGATTGTTCAAGTCATATACTCCCTGAAGAAAAAGGGAGCGGACACGTTTGATTGAAG
* * * *
41256 ATTGAGTCCTATACTCTCTGAAGGAATGGGGAGCGGACAC-ATTTGTTGAAGA-T-TT-AGTCCT
66 ATTGAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGA-TCGTTGAAGATTGTTCAGTCCT
* **
41317 ATACTCTCTGAAGGAATAGAGAACGGACTTGT
130 ATACTCTCTGAAGGAATAGAGAACAGACACGT
** **
41349 TT-TATGAAGATTGTTTGAGTTTTATACTCCCTGAA-ACAAAAGGGAGC
1 TTGT-TGAAGATTGTTCAAGTCATATACTCCCTGAAGA-AAAAGGGAGC
41396 AAACCCAATG
Statistics
Matches: 174, Mismatches: 27, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
157 2 0.01
158 68 0.39
160 2 0.01
161 2 0.01
162 42 0.24
163 2 0.01
165 23 0.13
166 7 0.04
167 26 0.15
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (161 bp):
TTGTTGAAGATTGTTCAAGTCATATACTCCCTGAAGAAAAAGGGAGCGGACACGTTTGATTGAAG
ATTGAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTCAGTCCTA
TACTCTCTGAAGGAATAGAGAACAGACACGT
Found at i:41615 original size:3 final size:3
Alignment explanation
Indices: 41586--41638 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
41576 ATATTATAAA
* * *
41586 TAT TAAT TA- TAT TGT TAT TAT TGT TAT TAT TAT TAT TAT TAA TATT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
41632 TAT TAT T
1 TAT TAT T
41639 TTACATTGGC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
2 2 0.05
3 34 0.83
4 5 0.12
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:50274 original size:8 final size:8
Alignment explanation
Indices: 50255--50331 Score: 74
Period size: 9 Copynumber: 9.8 Consensus size: 8
50245 TTAAAGATAA
50255 AAAAAATG
1 AAAAAATG
50263 -AAAAATG
1 AAAAAATG
50270 AAAAAAATG
1 -AAAAAATG
50279 AAAAAAATG
1 -AAAAAATG
50288 AAAAAATG
1 AAAAAATG
*
50296 -AAATA-G
1 AAAAAATG
50302 -AAAAATAG
1 AAAAAAT-G
50310 AAAAAATGG
1 AAAAAAT-G
50319 AAAAAAT-
1 AAAAAATG
50326 AAAAAA
1 AAAAAA
50332 AAGAAGAAGA
Statistics
Matches: 61, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
6 5 0.08
7 17 0.28
8 9 0.15
9 30 0.49
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.12
Consensus pattern (8 bp):
AAAAAATG
Found at i:50275 original size:17 final size:17
Alignment explanation
Indices: 50253--50365 Score: 67
Period size: 18 Copynumber: 6.5 Consensus size: 17
50243 GCTTAAAGAT
50253 AAAAAAAATGAAAAATG
1 AAAAAAAATGAAAAATG
50270 -AAAAAAATGAAAAAAATG
1 AAAAAAAATG--AAAAATG
50288 AAAAAATGAAATAGAAAAAT-
1 -AAAAA--AAAT-GAAAAATG
*
50308 AGAAAAAATGGAAAAAAT-
1 AAAAAAAAT-G-AAAAATG
*
50326 AAAAAAAA-GAAGAA-G
1 AAAAAAAATGAAAAATG
* *
50341 AAAAAAAGAAGAAGAA-G
1 AAAAAAA-ATGAAAAATG
50358 AAAAAAAA
1 AAAAAAAA
50366 CAAAAAAAAT
Statistics
Matches: 81, Mismatches: 4, Indels: 23
0.75 0.04 0.21
Matches are distributed among these distances:
15 11 0.14
16 12 0.15
17 19 0.23
18 20 0.25
19 4 0.05
20 4 0.05
21 6 0.07
22 4 0.05
23 1 0.01
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (17 bp):
AAAAAAAATGAAAAATG
Found at i:50299 original size:22 final size:22
Alignment explanation
Indices: 50274--50317 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
50264 AAAATGAAAA
50274 AAATGAAAAAAAT-GAAAAAATG
1 AAAT-AAAAAAATAGAAAAAATG
*
50296 AAATAGAAAAATAGAAAAAATG
1 AAATAAAAAAATAGAAAAAATG
50318 GAAAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.14
Consensus pattern (22 bp):
AAATAAAAAAATAGAAAAAATG
Found at i:50344 original size:14 final size:14
Alignment explanation
Indices: 50327--50362 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
50317 GGAAAAAATA
50327 AAAAAAAGAAGAAG
1 AAAAAAAGAAGAAG
50341 AAAAAAAGAAGAAG
1 AAAAAAAGAAGAAG
50355 AAGAAAAA
1 AA-AAAAA
50363 AAACAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAGAAG
Found at i:51740 original size:55 final size:55
Alignment explanation
Indices: 51656--51935 Score: 474
Period size: 55 Copynumber: 5.1 Consensus size: 55
51646 TGAAGCAAAA
51656 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
51711 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
51766 GAAGATTG-TGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* **
51819 GAAGATTGTTCGAGTCTTATACTCTCTGAATAAATAGGGGGCAGACGCGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
51874 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
51929 GGAGATT
1 GAAGATT
51936 ATTGTTCGAG
Statistics
Matches: 208, Mismatches: 15, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
53 47 0.23
54 6 0.03
55 155 0.75
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
Found at i:51859 original size:108 final size:110
Alignment explanation
Indices: 51656--51938 Score: 500
Period size: 108 Copynumber: 2.6 Consensus size: 110
51646 TGAAGCAAAA
51656 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
51721 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA-T
66 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATT-ATT
* *
51766 GAAGATTG-TGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
*
51829 CGAGTCTTATACTCTCTGAATAAATAGGGGGCAGACGCGATTATT
66 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATT
*
51874 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGGAGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
51939 GTTCGAGTTC
Statistics
Matches: 164, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
107 1 0.01
108 100 0.61
109 6 0.04
110 57 0.35
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (110 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATT
Found at i:52065 original size:28 final size:28
Alignment explanation
Indices: 51981--52065 Score: 79
Period size: 28 Copynumber: 3.2 Consensus size: 28
51971 AGACCCGTAG
51981 GAAGATTATTGTTCGAGTTCTAGTCCCT
1 GAAGATTATTGTTCGAGTTCTAGTCCCT
** ** * **
52009 GAAGAAAATTGGGC-A-TTCTCGT--AG
1 GAAGATTATTGTTCGAGTTCTAGTCCCT
52033 GAAGATTATTGTTCGAGTTCTAGTCCCT
1 GAAGATTATTGTTCGAGTTCTAGTCCCT
52061 GAAGA
1 GAAGA
52066 AAATTGGGCA
Statistics
Matches: 39, Mismatches: 14, Indels: 8
0.64 0.23 0.13
Matches are distributed among these distances:
24 10 0.26
25 1 0.03
26 12 0.31
27 1 0.03
28 15 0.38
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (28 bp):
GAAGATTATTGTTCGAGTTCTAGTCCCT
Found at i:52071 original size:28 final size:28
Alignment explanation
Indices: 51936--52071 Score: 78
Period size: 28 Copynumber: 5.1 Consensus size: 28
51926 GTTGGAGATT
51936 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
* **
51964 ATTG---G-G--C-AGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTAGTCCC-T--GAAGAAA
51988 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
** * ** **
52016 ATTGGGC-A-TTCTCGT--AGGAAGATT
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
52040 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
52068 ATTG
1 ATTG
52072 GGCAGACCCG
Statistics
Matches: 74, Mismatches: 20, Indels: 28
0.61 0.16 0.23
Matches are distributed among these distances:
21 5 0.07
22 2 0.03
24 20 0.27
25 2 0.03
26 12 0.16
27 2 0.03
28 24 0.32
30 2 0.03
31 5 0.07
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (28 bp):
ATTGTTCGAGTTCTAGTCCCTGAAGAAA
Found at i:52847 original size:52 final size:52
Alignment explanation
Indices: 51931--52840 Score: 1577
Period size: 52 Copynumber: 17.5 Consensus size: 52
51921 CGATCGTTGG
51931 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
** *
51983 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCATTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
52035 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTTGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
52087 AGATTATTGTTCGAGTTCTAGTCCTTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
52139 AGATTATTTTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
52191 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
52243 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
52295 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
52347 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
52399 AGATTATTGTTCGAGTTCTAGTCCGTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
52451 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
52503 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
52555 AGATTATTGTTCGAGTTCTAGTCCTTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* * * *
52607 AGATTATTTTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
52659 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
52711 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
52763 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
52815 AGATTATCGTTCGAGTTCTACTCCCT
1 AGATTATTGTTCGAGTTCTAGTCCCT
52841 AGAGAAAGAG
Statistics
Matches: 812, Mismatches: 46, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 812 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (52 bp):
AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
Found at i:52900 original size:54 final size:53
Alignment explanation
Indices: 52824--52970 Score: 174
Period size: 54 Copynumber: 2.8 Consensus size: 53
52814 AAGATTATCG
**
52824 TTCGAGTT-C-TACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAATATT
1 TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAATA-T
* * *
52876 TTCGAGTTCCATACTTCCTAGAGAAAGAGGGAGTGAACCCCGTAAGAAGATTAT
1 TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAA-CCCGTAAGAAGAATAT
* * *
52930 TT-GAGTTCTATACTGCCTGAAAGAAAGAGGGAGCGAACCCG
1 TTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCG
52971 ATTGTTGAAG
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
52 8 0.10
53 19 0.23
54 43 0.52
55 12 0.15
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (53 bp):
TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAATAT
Found at i:53090 original size:55 final size:55
Alignment explanation
Indices: 52950--53367 Score: 383
Period size: 55 Copynumber: 7.7 Consensus size: 55
52940 TACTGCCTGA
* *
52950 AAGAAAGAGGGAGC-GAACCCGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTATG
1 AAGAAATAGGGAGCAG-ACACGATTGTTGAAGATTGTTCGAGTCTTATACTCTC--TG
* *
53007 AAGAAATAGGGAGTAGACACGACTGTTGAAGATTGTTCGAGTCTTATACTCTCTG
1 AAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTG
*
53062 AAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTG
1 AAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTG
* * * * * *
53117 AAGGAATAGGGAGCAGACACGTTTATTGAAGGTTGTTCAAGTCATATACTCTCTG
1 AAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTG
* * *
53172 AAGAAATAGGGAGCGGACACGTTTGATTGAAGA---TT-GAGTCCTATACTCTCTG
1 AAGAAATAGGGAGCAGACACGATTG-TTGAAGATTGTTCGAGTCTTATACTCTCTG
* * * *
53224 AAGGAATGGGGAGCGGACAC-ATTTGTTGAAGA-T-TT--AGTCCTATACTCTCTG
1 AAGAAATAGGGAGCAGACACGA-TTGTTGAAGATTGTTCGAGTCTTATACTCTCTG
* * * * ** * * * *
53275 AAGGAATAGAGAACGGACTTG-TTTTATGAAGATTGTTTGAGTTTTATACTCCCTG
1 AAGAAATAGGGAGCAGACACGATTGT-TGAAGATTGTTCGAGTCTTATACTCTCTG
* * * * * *
53330 AA-ACAAAAGGGAGCAAACCCAATGGTCGAAGATTGTTC
1 AAGA-AATAGGGAGCAGACACGATTGTTGAAGATTGTTC
53368 AAAGAAGAGG
Statistics
Matches: 304, Mismatches: 45, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
50 3 0.01
51 44 0.14
52 39 0.13
53 4 0.01
55 158 0.52
56 8 0.03
57 47 0.15
58 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (55 bp):
AAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTG
Found at i:53343 original size:158 final size:161
Alignment explanation
Indices: 52975--53343 Score: 365
Period size: 158 Copynumber: 2.3 Consensus size: 161
52965 AACCCGATTG
* * * * ** **
52975 TTGAAGATTGTTCGAGTCTTATACTCTCTATGAAGAAATAGGGAGTAGACACGACTG-TTGAAGA
1 TTGAAGATTGTTCAAGTCATATACTC-C-CTGAAGAAAAAGGGAGCGGACACGTTTGATTGAAGA
*
53039 TTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTCGAGT
64 ---TT-GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTC-AGT
* * *
53104 CTTATACTCTCTGAAGGAATAGGGAGCAGACACGTTTA
124 CCTATACTCTCTGAAGGAATAGAGAACAGACACGTTTA
* * *
53142 TTGAAGGTTGTTCAAGTCATATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGATTGAAGATT
1 TTGAAGATTGTTCAAGTCATATACTCCCTGAAGAAAAAGGGAGCGGACACGTTTGATTGAAGATT
* * * *
53207 GAGTCCTATACTCTCTGAAGGAATGGGGAGCGGACAC-ATTTGTTGAAGA-T-TT-AGTCCTATA
66 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGA-TCGTTGAAGATTGTTCAGTCCTATA
* **
53268 CTCTCTGAAGGAATAGAGAACGGACTTGTTT-
130 CTCTCTGAAGGAATAGAGAACAGACACGTTTA
** **
53299 TATGAAGATTGTTTGAGTTTTATACTCCCTGAA-ACAAAAGGGAGC
1 T-TGAAGATTGTTCAAGTCATATACTCCCTGAAGA-AAAAGGGAGC
53344 AAACCCAATG
Statistics
Matches: 171, Mismatches: 27, Indels: 17
0.80 0.13 0.08
Matches are distributed among these distances:
157 2 0.01
158 68 0.40
160 2 0.01
161 2 0.01
162 42 0.25
163 2 0.01
165 23 0.13
166 7 0.04
167 23 0.13
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (161 bp):
TTGAAGATTGTTCAAGTCATATACTCCCTGAAGAAAAAGGGAGCGGACACGTTTGATTGAAGATT
GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTCAGTCCTATAC
TCTCTGAAGGAATAGAGAACAGACACGTTTA
Found at i:57727 original size:19 final size:19
Alignment explanation
Indices: 57703--57752 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
57693 ACACCTTTTG
*
57703 CATTTGCATTTGGCATCCA
1 CATTTGCATTCGGCATCCA
57722 CATTTGCATTCGGCATCCA
1 CATTTGCATTCGGCATCCA
57741 CATTTGCATTCG
1 CATTTGCATTCG
57753 CATTGCTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (19 bp):
CATTTGCATTCGGCATCCA
Found at i:62131 original size:8 final size:8
Alignment explanation
Indices: 62112--62179 Score: 65
Period size: 9 Copynumber: 8.8 Consensus size: 8
62102 CTTAAAGATA
62112 AAAAAATG
1 AAAAAATG
62120 -AAAAATG
1 AAAAAATG
62127 AAAAAAATG
1 -AAAAAATG
62136 AAAAAATG
1 AAAAAATG
*
62144 -AAATA-G
1 AAAAAATG
62150 -AAAAATAG
1 AAAAAAT-G
62158 AAAAAATGG
1 AAAAAAT-G
62167 AAAAAAT-
1 AAAAAATG
62174 AAAAAA
1 AAAAAA
62180 AAGAAGAAGA
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
6 5 0.10
7 17 0.33
8 9 0.17
9 21 0.40
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (8 bp):
AAAAAATG
Found at i:62133 original size:17 final size:17
Alignment explanation
Indices: 62111--62179 Score: 70
Period size: 16 Copynumber: 3.9 Consensus size: 17
62101 GCTTAAAGAT
62111 AAAAAAATG-AAAAATG
1 AAAAAAATGAAAAAATG
62127 AAAAAAATGAAAAAATG
1 AAAAAAATGAAAAAATG
62144 AAATAGAAAAATAGAAAAAATG
1 --A-A-AAAAAT-GAAAAAATG
*
62166 GAAAAAAT-AAAAAA
1 AAAAAAATGAAAAAA
62180 AAGAAGAAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
16 15 0.33
17 7 0.15
18 6 0.13
19 2 0.04
20 1 0.02
21 6 0.13
22 9 0.20
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.12
Consensus pattern (17 bp):
AAAAAAATGAAAAAATG
Found at i:62147 original size:22 final size:23
Alignment explanation
Indices: 62112--62184 Score: 71
Period size: 22 Copynumber: 3.1 Consensus size: 23
62102 CTTAAAGATA
62112 AAAAAATGAAAAATGAAAAAAAT-G
1 AAAAAATG-AAAAT-AAAAAAATAG
*
62136 AAAAAATG-AAATAGAAAAATAG
1 AAAAAATGAAAATAAAAAAATAG
62158 AAAAAATGGAAAAAATAAAAAAA-AG
1 AAAAAAT-G--AAAATAAAAAAATAG
62183 AA
1 AA
62185 GAAGAAAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
21 7 0.17
22 12 0.29
23 1 0.02
24 8 0.19
25 4 0.10
26 10 0.24
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.11
Consensus pattern (23 bp):
AAAAAATGAAAATAAAAAAATAG
Found at i:62155 original size:30 final size:30
Alignment explanation
Indices: 62115--62173 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
62105 AAAGATAAAA
62115 AAATGAAAAAT-GAAAAAAAT-GAAAAAATG
1 AAATGAAAAATAG-AAAAAATGGAAAAAATG
62144 AAATAGAAAAATAGAAAAAATGGAAAAAAT
1 AAAT-GAAAAATAGAAAAAATGGAAAAAAT
62174 AAAAAAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 4 0.15
30 14 0.52
31 9 0.33
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.14
Consensus pattern (30 bp):
AAATGAAAAATAGAAAAAATGGAAAAAATG
Found at i:62164 original size:9 final size:9
Alignment explanation
Indices: 62144--62184 Score: 52
Period size: 8 Copynumber: 4.9 Consensus size: 9
62134 TGAAAAAATG
62144 AAATAG-AA
1 AAATAGAAA
62152 AAATAGAAA
1 AAATAGAAA
*
62161 AAATGGAAA
1 AAATAGAAA
62170 AAATA-AAA
1 AAATAGAAA
62178 AAA-AGAA
1 AAATAGAA
62185 GAAGAAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 1 0.03
8 14 0.48
9 14 0.48
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (9 bp):
AAATAGAAA
Found at i:62191 original size:39 final size:37
Alignment explanation
Indices: 62113--62192 Score: 99
Period size: 39 Copynumber: 2.1 Consensus size: 37
62103 TTAAAGATAA
* *
62113 AAAAATGAAAAATGAAAAAAATGAAAAAATGAAATAG
1 AAAAATGAAAAATGAAAAAAATAAAAAAAAGAAATAG
*
62150 AAAAATAGAAAAAATGGAAAAAATAAAAAAAAGAAGA-AG
1 AAAAAT-G-AAAAATGAAAAAAATAAAAAAAAGAA-ATAG
62189 AAAA
1 AAAA
62193 CAAGAAGAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 6 0.16
38 1 0.03
39 29 0.78
40 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (37 bp):
AAAAATGAAAAATGAAAAAAATAAAAAAAAGAAATAG
Found at i:62192 original size:14 final size:14
Alignment explanation
Indices: 62175--62208 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
62165 GGAAAAAATA
62175 AAAAAAAGAAGAAG
1 AAAAAAAGAAGAAG
*
62189 AAAACAAGAAGAAG
1 AAAAAAAGAAGAAG
62203 AAAAAA
1 AAAAAA
62209 CAAAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAGAAG
Found at i:62202 original size:17 final size:16
Alignment explanation
Indices: 62180--62211 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
62170 AAATAAAAAA
62180 AAGAAGAAGAAAACAAG
1 AAGAAGAA-AAAACAAG
62197 AAGAAGAAAAAACAA
1 AAGAAGAAAAAACAA
62212 AAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.75, C:0.06, G:0.19, T:0.00
Consensus pattern (16 bp):
AAGAAGAAAAAACAAG
Found at i:63584 original size:55 final size:55
Alignment explanation
Indices: 63500--63891 Score: 612
Period size: 55 Copynumber: 7.2 Consensus size: 55
63490 TGAAGCAAAA
*
63500 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* *
63555 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* *
63610 GAAGATT-GTGGA-TCTTATACTCTCTGAAGAAATAGGGGGGCAGACGCGATCGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATA-GGGGGCAGACGCGATCGTT
* *
63664 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* *
63719 GAAGATT-GTGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
63772 GAAGATTGTTCGAGTCTTATACTCTCTGAATAAATAGGGGGCAGACGCGATTGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* *
63827 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCATACGCGATCGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
63882 GGAGATTATT
1 GAAGATTATT
63892 GTTCGAGTTC
Statistics
Matches: 308, Mismatches: 24, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
53 68 0.22
54 33 0.11
55 185 0.60
56 22 0.07
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (55 bp):
GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
Found at i:63834 original size:108 final size:110
Alignment explanation
Indices: 63500--63891 Score: 684
Period size: 109 Copynumber: 3.6 Consensus size: 110
63490 TGAAGCAAAA
63500 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
63565 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
66 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
*
63610 GAAGATTG-TGGA-TCTTATACTCTCTGAAGAAATAGGGGGGCAGACGCGATCGTTGAAGATTAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGGCAGACGCGATCGTTGAAGATTAT
63673 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
65 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
* *
63719 GAAGATTG-TGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
* *
63782 CGAGTCTTATACTCTCTGAATAAATAGGGGGCAGACGCGATTGTT
66 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
* *
63827 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCATACGCGATCGTTGGAGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
63892 GTTCGAGTTC
Statistics
Matches: 271, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
108 101 0.37
109 114 0.42
110 56 0.21
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (110 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
Found at i:63944 original size:52 final size:52
Alignment explanation
Indices: 63884--64215 Score: 592
Period size: 52 Copynumber: 6.4 Consensus size: 52
63874 CGATCGTTGG
63884 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
** *
63936 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCATTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
63988 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
64040 AGATTATTGTTCGAGTTCTAGTCCTTGAAGAAAATTGGGTAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
64092 AGATTATTTTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
64144 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
64196 AGATTATTGTTCGAGTTCTA
1 AGATTATTGTTCGAGTTCTA
64216 TACTCCCTAA
Statistics
Matches: 266, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 266 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (52 bp):
AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
Found at i:64018 original size:28 final size:28
Alignment explanation
Indices: 63934--64018 Score: 79
Period size: 28 Copynumber: 3.2 Consensus size: 28
63924 AGACCCGTAG
63934 GAAGATTATTGTTCGAGTTCTAGTCCCT
1 GAAGATTATTGTTCGAGTTCTAGTCCCT
** ** * **
63962 GAAGAAAATTGGGC-A-TTCTCGT--AG
1 GAAGATTATTGTTCGAGTTCTAGTCCCT
63986 GAAGATTATTGTTCGAGTTCTAGTCCCT
1 GAAGATTATTGTTCGAGTTCTAGTCCCT
64014 GAAGA
1 GAAGA
64019 AAATTGGGCA
Statistics
Matches: 39, Mismatches: 14, Indels: 8
0.64 0.23 0.13
Matches are distributed among these distances:
24 10 0.26
25 1 0.03
26 12 0.31
27 1 0.03
28 15 0.38
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (28 bp):
GAAGATTATTGTTCGAGTTCTAGTCCCT
Found at i:64024 original size:28 final size:28
Alignment explanation
Indices: 63889--64024 Score: 78
Period size: 28 Copynumber: 5.1 Consensus size: 28
63879 GTTGGAGATT
63889 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
* **
63917 ATTG---G-G--C-AGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTAGTCCC-T--GAAGAAA
63941 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
** * ** **
63969 ATTGGGC-A-TTCTCGT--AGGAAGATT
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
63993 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
64021 ATTG
1 ATTG
64025 GGCAGACCCG
Statistics
Matches: 74, Mismatches: 20, Indels: 28
0.61 0.16 0.23
Matches are distributed among these distances:
21 5 0.07
22 2 0.03
24 20 0.27
25 2 0.03
26 12 0.16
27 2 0.03
28 24 0.32
30 2 0.03
31 5 0.07
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (28 bp):
ATTGTTCGAGTTCTAGTCCCTGAAGAAA
Found at i:64273 original size:104 final size:102
Alignment explanation
Indices: 63941--64677 Score: 346
Period size: 104 Copynumber: 7.0 Consensus size: 102
63931 TAGGAAGATT
* * *
63941 ATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCATTCTCGTAGGAAGATTATTGTTCGAGTTC
1 ATTGTTCGAGTTCTACTCCCTGAAGAAAATTGGGCAGTCCCGTAGGAAGATTATTGTTCGAGTTC
* * * * **
64006 --TAGTCCCTGAAGAAAATTGG-GCAGACCCGTAGGAAG
66 TATACTCCCTAAAG-AAA-GGGAGCAAACCCGTTTGAAG
* * * * *
64042 ATTATTGTTCGAGTTCTAGTCCTTGAAGAAAATTGGGTAGACCCGTAGGAAGATTATTTTTCGAG
1 ---ATTGTTCGAGTTCTACTCCCTGAAGAAAATTGGGCAGTCCCGTAGGAAGATTATTGTTCGAG
* * * * **
64107 TTC--TAGTCCCTGAAGAAAATTGG-GCAGACCCGTAGGAAG
63 TTCTATACTCCCTAAAG-AAA-GGGAGCAAACCCGTTTGAAG
* *
64146 ATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGAAGATTATTGTTCGAG
1 ---ATTGTTCGAGTTCTACTCCCTGAAGAAAATTGGGCAGTCCCGTAGGAAGATTATTGTTCGAG
*
64211 TTCTATACTCCCTAAAGAGAGGGAGCAAACCCGTTTGAAG
63 TTCTATACTCCCTAAAGAAAGGGAGCAAACCCGTTTGAAG
* * * * **** **
64251 ATTGTTTGAGTTCTATACTCCCTGAAGAAAGA-GGGAGC-GAACCCATTTTCAGAAGATTGTTCG
1 ATTGTTCGAGTTC--TACTCCCTGAAGAAA-ATTGG-GCAG-TCCCGTAGGAAGATTATTGTTCG
* *
64314 AGTTCTATACTCCCTGAAGAAAAAGGGAGCGAACCCGTTTTCAGAAG
61 AGTTCTATACTCCCT-AA-AGAAAGGGAGCAAACCCG-TTT--GAAG
* **** **
64361 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGA--GGG-AGTGAACCCATTTTCAGAAGATTGTTC
1 ATTGTTCGAGTTC--TACTCCCTGAAGAAA-ATTGGGCAGT---CCCGTAGGAAGATTATTGTTC
* * * *
64423 GAGTTTTATACTCCTTGAAGAAAGAAGGAGCGAACCCGTTTGAAG
60 GAGTTCTATACTCCCTAAAGAAAG--GGAGCAAACCCGTTTGAAG
* * ** ** *
64468 ATT-TTCGAGTTCTATACTCCCTGAAGAAAGA-GGGAGC-GAACCCGTTTGAAGAAGA-TGTCCG
1 ATTGTTCGAGTTC--TACTCCCTGAAGAAA-ATTGG-GCAG-TCCCGTAGGAAGATTATTGTTCG
* * * **
64529 AGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACTCGTAAGAAG
61 AGTTCTATACTCCCTAAAG-AA-AGGGAGCAAACCCGTTTGAAG
* * * * * **
64573 AAGATGTTCGAGTTCCATACTCCCTAAAGAGAGA--GAGC-GAACCCGTTTGAAG---ATTGTTC
1 -A-TTGTTCGAGTT-C-TACTCCCTGAAGA-AAATTGGGCAG-TCCCGTAGGAAGATTATTGTTC
*
64632 GAGTTCTATACTTCCTAAAGAAAGAGGAAGCAAACCCGTTTGAAG
60 GAGTTCTATACTCCCTAAAGAAAG-GG-AGCAAACCCGTTTGAAG
64677 A
1 A
64678 AGATGTCCGA
Statistics
Matches: 538, Mismatches: 62, Indels: 67
0.81 0.09 0.10
Matches are distributed among these distances:
102 14 0.03
103 6 0.01
104 212 0.39
105 83 0.15
106 71 0.13
107 28 0.05
108 34 0.06
109 8 0.01
110 82 0.15
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (102 bp):
ATTGTTCGAGTTCTACTCCCTGAAGAAAATTGGGCAGTCCCGTAGGAAGATTATTGTTCGAGTTC
TATACTCCCTAAAGAAAGGGAGCAAACCCGTTTGAAG
Found at i:64273 original size:156 final size:153
Alignment explanation
Indices: 63884--64280 Score: 492
Period size: 156 Copynumber: 2.5 Consensus size: 153
63874 CGATCGTTGG
* * * * *
63884 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCG
1 AGATTATTGTTCGAGTTCTACTCCCTAAAGAAAATGGGGCAAACCCGTAGGAAG---ATTGTTTG
** *
63949 AGTTCTAGTCCCTGAAGAAAATTGGGCATTCTCGTAGGAAGATTATTGTTCGAGTTCTAGTCCCT
63 AGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCGAGTTCTAGTCCCT
64014 GAAGAAAATTGGGCAGACCCGTAGGA
128 GAAGAAAATTGGGCAGACCCGTAGGA
* * * * * * *
64040 AGATTATTGTTCGAGTTCTAGTCCTTGAAGAAAATTGGGTAGACCCGTAGGAAGATTATTTTTCG
1 AGATTATTGTTCGAGTTCTACTCCCTAAAGAAAATGGGGCAAACCCGTAGGAAGA-T-TGTTT-G
64105 AGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCGAGTTCTAGTCCCT
63 AGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCGAGTTCTAGTCCCT
* *
64170 GAAGAAAATTGGGCAGTCTCGTAGGA
128 GAAGAAAATTGGGCAGACCCGTAGGA
* **
64196 AGATTATTGTTCGAGTTCTATACTCCCTAAAG-AGA-GGGAGCAAACCCGTTTGAAGATTGTTTG
1 AGATTATTGTTCGAGTTC--TACTCCCTAAAGAAAATGGG-GCAAACCCGTAGGAAGATTGTTTG
*
64259 AGTTCTATACTCCCTGAAGAAA
63 AGTTC--TAGTCCCTGAAGAAA
64281 GAGGGAGCGA
Statistics
Matches: 213, Mismatches: 20, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
153 1 0.00
154 7 0.03
155 7 0.03
156 174 0.82
157 15 0.07
158 9 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (153 bp):
AGATTATTGTTCGAGTTCTACTCCCTAAAGAAAATGGGGCAAACCCGTAGGAAGATTGTTTGAGT
TCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCGAGTTCTAGTCCCTGAA
GAAAATTGGGCAGACCCGTAGGA
Found at i:64550 original size:54 final size:54
Alignment explanation
Indices: 64203--64823 Score: 707
Period size: 55 Copynumber: 11.7 Consensus size: 54
64193 GGAAGATTAT
* * *
64203 TGTTCGAGTTCTATACTCCCT-AA-AGAGAGGGAGCAAACCCGTTTGAAG-A-T
1 TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * **
64253 TGTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCATTTTCAGAAGA
1 TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* **
64307 TTGTTCGAGTTCTATACTCCCTGAAGAAAAAGGGAGCGAACCCGTTTTCAGAAGA
1 -TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * **
64362 TTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGTGAACCCATTTTCAGAAGA
1 -TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * *
64417 TTGTTCGAGTTTTATACTCCTTGAAGAAAGAAGGAGCGAACCCGTTT---GAAGA
1 -TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
*
64469 TTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
1 TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * **
64523 TGTCCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACTCGTAAGAAGAAGA
1 TGTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * * *
64577 TGTTCGAGTTCCATACTCCCT-AA-AGAGAGAGAGCGAACCCGTTTGAAG-A-T
1 TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * * *
64627 TGTTCGAGTTCTATACTTCCTAAAGAAAGAGGAAGCAAACCCGTTTGAAGAAGA
1 TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * *
64681 TGTCCGAGTTTTATACTCCCT-AGAGAAAGAGGGAGCAAACCCG-TTGAA-AAGA
1 TGTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * **
64733 TATTCGAGTTCTATACTCTCTGAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGA
1 TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * *
64787 TTGTTCGAG-TCTCATACTCTCTGAAGGAATAGGGAGC
1 -TGTTCGAGTTCT-ATACTCCCTGAAGAAAGAGGGAGC
64824 AGAAATGATA
Statistics
Matches: 496, Mismatches: 56, Indels: 33
0.85 0.10 0.06
Matches are distributed among these distances:
50 39 0.08
51 47 0.09
52 106 0.21
53 14 0.03
54 116 0.23
55 174 0.35
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (54 bp):
TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
Found at i:64623 original size:106 final size:109
Alignment explanation
Indices: 64203--64823 Score: 699
Period size: 106 Copynumber: 5.8 Consensus size: 109
64193 GGAAGATTAT
* * *
64203 TGTTCGAGTTCTATACTCCCTA-AAG--AGAGGGAGCAAACCCGTTTGAAG-A-TTGTTTGAGTT
1 TGTTCGAGTTCTATACTCCCTAGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCGAGTT
* **
64263 CTATACTCCCTGAAGAAAGAGGGAGCGAACCCATTTTCAGAAGA
66 CTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* **
64307 TTGTTCGAGTTCTATACTCCCT-GAAGAAAAAGGGAGCGAACCCGTTTTCAGAAGATTGTTCGAG
1 -TGTTCGAGTTCTATACTCCCTAGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA-TGTTCGAG
* * **
64371 TTCTATACTCCCTGAAGAAAGAGGGAGTGAACCCATTTTCAGAAGA
64 TTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * * *
64417 TTGTTCGAGTTTTATACT-CCTTGAAGAAAGAAGGAGCGAACCCGTTT---GAAGATTTTCGAGT
1 -TGTTCGAGTTCTATACTCCCTAGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCGAGT
64478 TCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
65 TCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * **
64523 TGTCCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACTCGTAAGAAGAAGATGTTCGAGTT
1 TGTTCGAGTTCTATACTCCCTAGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCGAGTT
* * * *
64587 CCATACTCCCT-AA-AGAGAGAGAGCGAACCCGTTTGAAG-A-T
66 CTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * * *
64627 TGTTCGAGTTCTATACTTCCTA-AAGAAAGAGGAAGCAAACCCGTTTGAAGAAGATGTCCGAGTT
1 TGTTCGAGTTCTATACTCCCTAGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCGAGTT
* *
64691 TTATACTCCCT-AGAGAAAGAGGGAGCAAACCCG-TTGAA-AAGA
66 CTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
* * **
64733 TATTCGAGTTCTATACTCTCT-GAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTGTTCGAG-
1 TGTTCGAGTTCTATACTCCCTAGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA-TGTTCGAGT
* * *
64796 TCTCATACTCTCTGAAGGAATAGGGAGC
65 TCT-ATACTCCCTGAAGAAAGAGGGAGC
64824 AGAAATGATA
Statistics
Matches: 443, Mismatches: 53, Indels: 38
0.83 0.10 0.07
Matches are distributed among these distances:
104 65 0.15
105 66 0.15
106 139 0.31
107 52 0.12
108 26 0.06
109 3 0.01
110 92 0.21
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (109 bp):
TGTTCGAGTTCTATACTCCCTAGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCGAGTT
CTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA
Found at i:64986 original size:55 final size:53
Alignment explanation
Indices: 64201--64993 Score: 587
Period size: 55 Copynumber: 14.8 Consensus size: 53
64191 TAGGAAGATT
* *
64201 ATTGTTCGAGTTCTATACTCCCT-AA-AGAGAGGGAGCAAACCCG-T-TTGAAG
1 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAA-CCGATGTTGAAG
* * *
64251 ATTGTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCATTTTCAGAAG
1 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCGATGTT--GAAG
* *
64306 ATTGTTCGAGTTCTATACTCCCTGAAGAAAAAGGGAGCGAACCCG-TTTTCAGAAG
1 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAA-CCGATGTT--GAAG
* * *
64361 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGTGAACCCATTTTCAGAAG
1 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCGATGTT--GAAG
* * *
64416 ATTGTTCGAGTTTTATACTCCTTGAAGAAAGAAGGAGCGAACCCG-T-TTGAAG
1 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAA-CCGATGTTGAAG
64468 ATT-TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCG-T-TTGAAG
1 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAA-CCGATGTTGAAG
* * * **
64519 AAGATGTCCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACTCGTAAGAAGAAG
1 -A-TTGTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAAC-CG-ATGTTGAAG
* * *
64576 A-TGTTCGAGTTCCATACTCCCT-AA-AGAGAGAGAGCGAACCCG-T-TTGAAG
1 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAA-CCGATGTTGAAG
* * * *
64625 ATTGTTCGAGTTCTATACTTCCTAAAGAAAGAGGAAGCAAACCCG-T-TTGAAG
1 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAA-CCGATGTTGAAG
* * * * *
64677 AAGATGTCCGAGTTTTATACTCCCT-AGAGAAAGAGGGAGCAAACC--CGTTGAAAAG
1 -A-TTGTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCGATGTTG--AAG
* * * **
64732 A-TATTCGAGTTCTATACTCTCTGAAGAAAGAGGGAGCGAACCCGTAAGAAGAAG
1 ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAA-CCG-ATGTTGAAG
* * * **
64786 ATTGTTCGAG-TCTCATACTCTCTGAAGGAATAGGGAGCAGAAATGATAGTTGAAG
1 ATTGTTCGAGTTCT-ATACTCCCTGAAGAAAGAGGGAGC-GAACCGAT-GTTGAAG
* * * * ** *
64841 ATTGTTCGAG-TCTTATACTCTCTAAAGGAATAGGGA-AAAGACATGATTGTTGAAG
1 ATTGTTCGAGTTC-TATACTCCCTGAAGAAAGAGGGAGCGA-AC-CGA-TGTTGAAG
* * * * * *
64896 ATTGTTCAAG-TCTTATACTCTCTGAAGGAATAGGGAACAAACACGAGTGTTGAAG
1 ATTGTTCGAGTTC-TATACTCCCTGAAGAAAGAGGGAGCGAAC-CGA-TGTTGAAG
* *
64951 A-TGTTTGAGTTCTATACTCCCTGAAAGAAAGAGGGAACGAACC
1 ATTGTTCGAGTTCTATACTCCCTG-AAGAAAGAGGGAGCGAACC
64994 CATTGGCAGA
Statistics
Matches: 627, Mismatches: 73, Indels: 82
0.80 0.09 0.10
Matches are distributed among these distances:
49 5 0.01
50 41 0.07
51 51 0.08
52 88 0.14
53 18 0.03
54 120 0.19
55 286 0.46
56 14 0.02
57 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (53 bp):
ATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCGATGTTGAAG
Found at i:65318 original size:3 final size:3
Alignment explanation
Indices: 65267--65303 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
65257 GGATTATAAA
65267 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
65304 ATGTTACATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:70482 original size:15 final size:15
Alignment explanation
Indices: 70462--70491 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70452 GCTGGGTGGA
*
70462 CGGATGTGGGGCGGG
1 CGGATGCGGGGCGGG
70477 CGGATGCGGGGCGGG
1 CGGATGCGGGGCGGG
70492 TAATGTCTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.17, G:0.67, T:0.10
Consensus pattern (15 bp):
CGGATGCGGGGCGGG
Found at i:72729 original size:37 final size:35
Alignment explanation
Indices: 72688--72760 Score: 83
Period size: 37 Copynumber: 2.0 Consensus size: 35
72678 TATATTTTTT
* *
72688 ATAAAATTATCATAATTCAAAATAATTTAATAATTTA
1 ATAAAATTATAATAATTCAAAAT-A-TTAAAAATTTA
* * *
72725 ATAAATTTTTAATATTTCAAAATATTAAAAATTTA
1 ATAAAATTATAATAATTCAAAATATTAAAAATTTA
72760 A
1 A
72761 GAACAAAGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
35 11 0.35
36 1 0.03
37 19 0.61
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (35 bp):
ATAAAATTATAATAATTCAAAATATTAAAAATTTA
Found at i:73290 original size:15 final size:14
Alignment explanation
Indices: 73268--73314 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 14
73258 ATTTGAAAGC
73268 TAGAGTAATTAAAT
1 TAGAGTAATTAAAT
73282 TAGGAGTAATTTGAAAGT
1 TA-GAGTAA-TT-AAA-T
73300 TA-AGTAATTAAAT
1 TAGAGTAATTAAAT
73313 TA
1 TA
73315 AGGGTAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
13 3 0.10
14 5 0.17
15 8 0.28
16 7 0.24
17 3 0.10
18 3 0.10
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.36
Consensus pattern (14 bp):
TAGAGTAATTAAAT
Found at i:73307 original size:16 final size:17
Alignment explanation
Indices: 73257--73308 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
73247 ATAAAAAATA
*
73257 AATTTGAAAGCTAGAGT
1 AATTTGAAAGTTAGAGT
73274 AA-TT-AAA-TTAGGAGT
1 AATTTGAAAGTTA-GAGT
73289 AATTTGAAAGTTA-AGT
1 AATTTGAAAGTTAGAGT
73305 AATT
1 AATT
73309 AAATTAAGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
14 2 0.07
15 9 0.30
16 11 0.37
17 5 0.17
18 3 0.10
ACGTcount: A:0.44, C:0.02, G:0.19, T:0.35
Consensus pattern (17 bp):
AATTTGAAAGTTAGAGT
Found at i:79220 original size:69 final size:69
Alignment explanation
Indices: 79130--80138 Score: 1504
Period size: 69 Copynumber: 14.6 Consensus size: 69
79120 TTGGGATAGA
* * * * *
79130 TAATTGTATTGAGGACGGTTGGGGTTGAAATCATTGAGAAAAGCGTTTTTCATGGCCTCCTGGGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
79195 CAAG
66 CAAG
* *
79199 TAATTGTACTGAGGACGGTTGGCGTC-AAAGTCCTTGAGAAAAGAGTTCTTCATGGCCTCCTGAG
1 TAATTGTACTGAGGACGGTTGGGGTCGAAA-TCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAG
*
79263 ACAGG
65 ACAAG
* * *
79268 TAATTGTACTGGGGACGGTTAGGGTCGAAATCCTTGAGGAAAGCGTTCTTCATGGCCTCCTGAGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
79333 CAAG
66 CAAG
* *
79337 TAATTGTACTGGGGACGGTTGGGGTCGAAGTCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
79402 CAAG
66 CAAG
* * *
79406 TAATTGTACTGGGGACGGTTGGGGTCGAAGTCCTTGAGAAAAGCGTTCTTCATGGCCTCTTGAGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
79471 CAAG
66 CAAG
** * *
79475 TAATTGTACTGAGGACGGTTGGAATCGAAGTCCTTGAGAAAAGCGTTCTTCATGGCCTCTTGAGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
79540 CAAG
66 CAAG
* *
79544 TAATTGTACTGAGGACGGTTGGGGTCAAAATCCTTGAGGAAAGCGTTCTTCATGGCCTCCTGAGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
79609 CAAG
66 CAAG
*
79613 TAATTGTACTGAGGACGGTTGGGGTCGAAGTCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
*
79678 CAAA
66 CAAG
* *
79682 TAATTGTACTGAGGACGGTTGGGATCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCTTGAGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
79747 CAAG
66 CAAG
* *
79751 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTAAGGAAAGCGTTCTTCATGGCCTCCTGAGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
79816 C-AG
66 CAAG
* * *
79819 ATAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGGAATGCATTCTTCATGGCCTCCTGAG
1 -TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAG
79884 AC-AG
65 ACAAG
* * * * *
79888 ATAATTGTATTGAGGACGGTTGGGATCGAAATCCTTAAGGAAAGCGTTCTTCATTGCCTCCTGAG
1 -TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAG
79953 AC-AG
65 ACAAG
* * *
79957 ATAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAATGCATTCTTCATTGCCTCCTGAG
1 -TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAG
* *
80022 AGAGG
65 ACAAG
* * * * *
80027 TAATTGTATTGAGGACGGTTCGGGTCGAAATCCTTGAGAAAAGCGTTTTTCATGGCATCCTGCGA
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
*
80092 CAGG
66 CAAG
* * *
80096 TAATTATACTGAGGACGATTCGGGTCGAAATCCTTGAGAAAAG
1 TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAG
80139 ACTTAGCAGC
Statistics
Matches: 868, Mismatches: 68, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
68 5 0.01
69 859 0.99
70 4 0.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (69 bp):
TAATTGTACTGAGGACGGTTGGGGTCGAAATCCTTGAGAAAAGCGTTCTTCATGGCCTCCTGAGA
CAAG
Found at i:80698 original size:31 final size:31
Alignment explanation
Indices: 80652--80721 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
80642 AACATCAATT
* * * * *
80652 AACTCGAAATCAAAAATTAAATCTCGATTCG
1 AACTCAAAATAAAAAATCAAAGCTCGACTCG
*
80683 AACTCAAAATAAAAAATCGAAGCTCGACTCG
1 AACTCAAAATAAAAAATCAAAGCTCGACTCG
80714 -ACTCAAAA
1 AACTCAAAA
80722 GCTCTCGAGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 8 0.24
31 25 0.76
ACGTcount: A:0.49, C:0.21, G:0.10, T:0.20
Consensus pattern (31 bp):
AACTCAAAATAAAAAATCAAAGCTCGACTCG
Found at i:82292 original size:3 final size:3
Alignment explanation
Indices: 82284--82377 Score: 82
Period size: 3 Copynumber: 30.7 Consensus size: 3
82274 TCAACCATCC
* * * * *
82284 TAT TAT TAT CAT CAT TAT TTT TAT TA- TAT TAT AAAA TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
* * *
82329 TAT TAT TAT TAT TAT TAT TAT TAT TACA AAA TAT TAT TAT TATT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA-T TAT
82376 TA
1 TA
82378 CAAACTCATT
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
2 2 0.03
3 68 0.91
4 5 0.07
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:83505 original size:28 final size:28
Alignment explanation
Indices: 83453--83510 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
83443 TAACTTTATC
* **
83453 TTTTTGGTCAAAATAAGTATTTAAAATA
1 TTTTTGGACAAAATAAGTACCTAAAATA
* *
83481 TTTTTGGACAAAATAGGTACCTAAAGTA
1 TTTTTGGACAAAATAAGTACCTAAAATA
83509 TT
1 TT
83511 CAATCTTTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.40
Consensus pattern (28 bp):
TTTTTGGACAAAATAAGTACCTAAAATA
Found at i:84218 original size:19 final size:18
Alignment explanation
Indices: 84179--84227 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
84169 ATACTTATTG
*
84179 AAAATAAAAAAACAAATA
1 AAAATAAAGAAACAAATA
*
84197 AAAATAAAGATACAATATA
1 AAAATAAAGAAACAA-ATA
*
84216 AAAAAAAAGAAA
1 AAAATAAAGAAA
84228 ATAAAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (18 bp):
AAAATAAAGAAACAAATA
Found at i:84230 original size:17 final size:19
Alignment explanation
Indices: 84190--84225 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
84180 AAATAAAAAA
*
84190 ACAA-ATAAAAATAAAGAT
1 ACAATATAAAAAAAAAGAT
84208 ACAATATAAAAAAAAAGA
1 ACAATATAAAAAAAAAGA
84226 AAATAAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.14
Consensus pattern (19 bp):
ACAATATAAAAAAAAAGAT
Found at i:84608 original size:2 final size:2
Alignment explanation
Indices: 84601--84650 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
84591 ATCTTTGAAG
84601 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84643 AT AT -T AT A
1 AT AT AT AT A
84651 GTCGTGAATT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85273 original size:17 final size:18
Alignment explanation
Indices: 85251--85289 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
85241 ACTGCTATGG
*
85251 TTTATTTAAATTT-AATT
1 TTTATTCAAATTTAAATT
*
85268 TTTATTCGAATTTAAATT
1 TTTATTCAAATTTAAATT
85286 TTTA
1 TTTA
85290 ATCCACGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTATTCAAATTTAAATT
Found at i:88121 original size:20 final size:21
Alignment explanation
Indices: 88088--88127 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
88078 AATGAAAATA
*
88088 CTTTTTTTCTTTCCTTTATTG
1 CTTTTTATCTTTCCTTTATTG
88109 CTTTTTATC-TTCCTTTATT
1 CTTTTTATCTTTCCTTTATT
88128 TTTATTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.07, C:0.20, G:0.03, T:0.70
Consensus pattern (21 bp):
CTTTTTATCTTTCCTTTATTG
Found at i:89173 original size:27 final size:28
Alignment explanation
Indices: 89121--89174 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
89111 ATTCATTATG
89121 ATTTTAAATTTTAATGATTAATAATTAGA
1 ATTTTAAATTTT-ATGATTAATAATTAGA
*
89150 ATTTTACATTTT-TGATTTAA-AATTA
1 ATTTTAAATTTTATGA-TTAATAATTA
89175 AAATAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 8 0.35
28 4 0.17
29 11 0.48
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.52
Consensus pattern (28 bp):
ATTTTAAATTTTATGATTAATAATTAGA
Found at i:89491 original size:13 final size:13
Alignment explanation
Indices: 89473--89497 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89463 CAAAATAAAA
89473 TAAAATTAATAAT
1 TAAAATTAATAAT
89486 TAAAATTAATAA
1 TAAAATTAATAA
89498 AATATCATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAAATTAATAAT
Found at i:90676 original size:60 final size:60
Alignment explanation
Indices: 90583--90706 Score: 178
Period size: 60 Copynumber: 2.1 Consensus size: 60
90573 ATATTTGAAT
* * * *
90583 CGTGGTGTTTGAACCACACGGCAATTAACGAAAGATAAAAGCAGTGTTTTATTAATTTCA
1 CGTGGTGTATGAACCACACGGCAATTAACGAAAGATAAAAGCAGCGGTTTATTAACTTCA
* *
90643 CGTGGTGTATGACCCACACGG-ACATTAATGAAAGATAAAAGCAGCGGTTTATTAACTTCA
1 CGTGGTGTATGAACCACACGGCA-ATTAACGAAAGATAAAAGCAGCGGTTTATTAACTTCA
90703 CGTG
1 CGTG
90707 ACCCACACGA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
59 1 0.02
60 56 0.98
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (60 bp):
CGTGGTGTATGAACCACACGGCAATTAACGAAAGATAAAAGCAGCGGTTTATTAACTTCA
Found at i:93388 original size:13 final size:13
Alignment explanation
Indices: 93370--93394 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93360 ATATGATATT
93370 TTATTAATTTTAA
1 TTATTAATTTTAA
93383 TTATTAATTTTA
1 TTATTAATTTTA
93395 TTTTATTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTAATTTTAA
Found at i:94222 original size:10 final size:10
Alignment explanation
Indices: 94207--94236 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
94197 ATTTTTTAAT
94207 GATTAAATTA
1 GATTAAATTA
*
94217 GATTAAAGTA
1 GATTAAATTA
94227 GATTAAATTA
1 GATTAAATTA
94237 CAAGATAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (10 bp):
GATTAAATTA
Found at i:98364 original size:20 final size:20
Alignment explanation
Indices: 98341--98389 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
98331 GGTTTTTTTT
98341 AACCGGATATGATATTTTAA
1 AACCGGATATGATATTTTAA
98361 AACCGGATATGATATTTTAA
1 AACCGGATATGATATTTTAA
98381 AACCGGATA
1 AACCGGATA
98390 GTATAACCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (20 bp):
AACCGGATATGATATTTTAA
Found at i:98514 original size:20 final size:20
Alignment explanation
Indices: 98489--98533 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
98479 TTATTCGGAA
98489 AAAAATCCGGTATGGGGTTT
1 AAAAATCCGGTATGGGGTTT
* * *
98509 AAAAATCTGGTCTGGGTTTT
1 AAAAATCCGGTATGGGGTTT
98529 AAAAA
1 AAAAA
98534 ATTAGATGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (20 bp):
AAAAATCCGGTATGGGGTTT
Found at i:99553 original size:23 final size:24
Alignment explanation
Indices: 99526--99572 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
99516 AGATAGAGAT
99526 TATTTAAATTAAAAAAAT-TAAAA
1 TATTTAAATTAAAAAAATCTAAAA
* * *
99549 TATTTAGATTTAAAATATCTAAAA
1 TATTTAAATTAAAAAAATCTAAAA
99573 AAATTAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (24 bp):
TATTTAAATTAAAAAAATCTAAAA
Found at i:106937 original size:33 final size:33
Alignment explanation
Indices: 106895--106981 Score: 113
Period size: 33 Copynumber: 2.6 Consensus size: 33
106885 GTTTTATTTG
* **
106895 TTTAATAGGTAGTTAGTTTTTAGTGGGTTTTTA
1 TTTAATAGGTAGTTAGTTTTTAGTGGATGATTA
106928 TTTAATAGGTA-TTGAGTTTTTAGTGGATGATTA
1 TTTAATAGGTAGTT-AGTTTTTAGTGGATGATTA
* *
106961 TTTAATTGGTAGTGAGTTTTT
1 TTTAATAGGTAGTTAGTTTTT
106982 TAGATTATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.04
33 44 0.94
34 1 0.02
ACGTcount: A:0.23, C:0.00, G:0.24, T:0.53
Consensus pattern (33 bp):
TTTAATAGGTAGTTAGTTTTTAGTGGATGATTA
Found at i:107004 original size:3 final size:3
Alignment explanation
Indices: 106991--107075 Score: 134
Period size: 3 Copynumber: 27.7 Consensus size: 3
106981 TTAGATTATG
* *
106991 TAA TAA TTAA TAA TGA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
107037 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TA
107076 GTATTTTTCG
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
3 70 0.92
4 6 0.08
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:107638 original size:82 final size:84
Alignment explanation
Indices: 107483--107638 Score: 201
Period size: 82 Copynumber: 1.9 Consensus size: 84
107473 TTATTTATGT
* * *
107483 CACATGTTTAATTTATAAGAAAAAAATTGATTGTATTTTTCGTCTTTTTTCTATCATTGTTAATA
1 CACATGTTTAATTTATAAGAAAAAAATTGATTGTATTTTTCGTCTTTGTCCTATCATTGTTAACA
107548 CAAGAATGTTTGTTTATAC
66 CAAGAATGTTTGTTTATAC
* ** * *
107567 CACATGTTTCATTTATCGGACAAAAATT-AGTT-T-TTTTTCGTCTTTGTCCTATCCTTGTTAAC
1 CACATGTTTAATTTATAAGAAAAAAATTGA-TTGTATTTTTCGTCTTTGTCCTATCATTGTTAAC
*
107629 ACAATAATGT
65 ACAAGAATGT
107639 GCAAAGAGCG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
82 34 0.55
83 2 0.03
84 26 0.42
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.46
Consensus pattern (84 bp):
CACATGTTTAATTTATAAGAAAAAAATTGATTGTATTTTTCGTCTTTGTCCTATCATTGTTAACA
CAAGAATGTTTGTTTATAC
Found at i:107767 original size:33 final size:33
Alignment explanation
Indices: 107728--107794 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
107718 ACCTAATCTA
* * **
107728 AAAAACTCATTACCTATTAAATAATCATCCACT
1 AAAAACTCAATACATATTAAATAAAAATCCACT
*
107761 AAAAACTCAATATATATTAAATAAAAATCCACT
1 AAAAACTCAATACATATTAAATAAAAATCCACT
107794 A
1 A
107795 CCTACTAAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.28
Consensus pattern (33 bp):
AAAAACTCAATACATATTAAATAAAAATCCACT
Found at i:112228 original size:21 final size:21
Alignment explanation
Indices: 112204--112246 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
112194 TCAAGGTGTA
*
112204 ATGTTAGATACAGGTCATCTC
1 ATGTTAGATACAGGTAATCTC
*
112225 ATGTTAGATACATGTAATCTC
1 ATGTTAGATACAGGTAATCTC
112246 A
1 A
112247 GGTGAAGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (21 bp):
ATGTTAGATACAGGTAATCTC
Found at i:116835 original size:18 final size:19
Alignment explanation
Indices: 116798--116835 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
116788 CACGGAATGT
*
116798 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GAGAATAA
116818 AAGATTACCA-GAGAATAA
1 AAGATTACCAGGAGAATAA
116836 GATTACTGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.50, C:0.11, G:0.21, T:0.18
Consensus pattern (19 bp):
AAGATTACCAGGAGAATAA
Found at i:133735 original size:17 final size:19
Alignment explanation
Indices: 133699--133735 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
133689 TATGTGAAGG
133699 TATAAGAATAAGAAGAAAGA
1 TATAAGAATAAG-AGAAAGA
133719 TATAAGAA-AAG-GAAAGA
1 TATAAGAATAAGAGAAAGA
133736 ATTATTAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.35
19 3 0.18
20 8 0.47
ACGTcount: A:0.65, C:0.00, G:0.22, T:0.14
Consensus pattern (19 bp):
TATAAGAATAAGAGAAAGA
Found at i:152521 original size:58 final size:60
Alignment explanation
Indices: 152444--152575 Score: 153
Period size: 59 Copynumber: 2.2 Consensus size: 60
152434 TTTTTAGGTT
* * *
152444 AAAG-TATATAAATGGTCCTC-AAATATAAGATACTACTTTGTTGAGTC-CACGACTATTA
1 AAAGTTATA-AAATGATCCTCTAAATATAAGATACTACTTTGTTAAGTCTCACGAATATTA
* ** *
152502 AAAGTTATAAAATGATCCTCTAACTATAAGATGTTACTTTGTTAAGTCTCTCGAATATTA
1 AAAGTTATAAAATGATCCTCTAAATATAAGATACTACTTTGTTAAGTCTCACGAATATTA
* *
152562 CAAGTTACAAAATG
1 AAAGTTATAAAATG
152576 GCCACTCAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
58 14 0.23
59 27 0.44
60 21 0.34
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (60 bp):
AAAGTTATAAAATGATCCTCTAAATATAAGATACTACTTTGTTAAGTCTCACGAATATTA
Found at i:152920 original size:60 final size:60
Alignment explanation
Indices: 152793--152920 Score: 141
Period size: 60 Copynumber: 2.1 Consensus size: 60
152783 ATAGGCGAGT
* * * ** * * *
152793 GACCATTTTGTAACTTTTTATAATTAGAGGACACAACAAAGTAACATCCTATAGTCGAGG
1 GACCATTTTGTAACTGTTAATAATCAGAGGACACAACAAAACAACATCCTATAATCAAGA
* *
152853 GACCATTTTGTAACTGTTAATAGTCAGAGGACTCAACAAAACAAC-TCCTTATAATCAAGA
1 GACCATTTTGTAACTGTTAATAATCAGAGGACACAACAAAACAACATCC-TATAATCAAGA
*
152913 GATCATTT
1 GACCATTT
152921 GTATACTTTA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
59 3 0.05
60 53 0.95
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (60 bp):
GACCATTTTGTAACTGTTAATAATCAGAGGACACAACAAAACAACATCCTATAATCAAGA
Found at i:157026 original size:21 final size:21
Alignment explanation
Indices: 157002--157148 Score: 125
Period size: 21 Copynumber: 6.7 Consensus size: 21
156992 TGCCTGTCGC
*
157002 CTCTCCACCACCACCAGTTTA
1 CTCTCCACCACCACCAGTCTA
* *
157023 CTCTCCACCTCCTCCAGTCTA
1 CTCTCCACCACCACCAGTCTA
* * * *
157044 CTCACCACCTCCGCCTGTCTA
1 CTCTCCACCACCACCAGTCTA
* *
157065 CTCACCACCACCACCCGTCTA
1 CTCTCCACCACCACCAGTCTA
157086 CTCTCCACCCCCACCACCTCCAGTTCT-
1 CTCTCCA---CCACCA---CCAG-TCTA
* *
157113 CTCACCCCCACCACCAGTCTA
1 CTCTCCACCACCACCAGTCTA
157134 CTCTCCACCACCACC
1 CTCTCCACCACCACC
157149 TCCTCCAGTC
Statistics
Matches: 103, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
20 3 0.03
21 77 0.75
24 12 0.12
27 8 0.08
28 3 0.03
ACGTcount: A:0.19, C:0.56, G:0.05, T:0.20
Consensus pattern (21 bp):
CTCTCCACCACCACCAGTCTA
Found at i:157100 original size:48 final size:47
Alignment explanation
Indices: 157046--157241 Score: 221
Period size: 48 Copynumber: 4.1 Consensus size: 47
157036 CCAGTCTACT
*
157046 CACCACCTCCGCCTGTCTACTCACCACCACCACCCGTCTACTCTCCAC
1 CACCACCTCCGCCAGTCT-CTCACCACCACCACCCGTCTACTCTCCAC
* * * * *
157094 CCCCACCACCTCCAGTTCTCTCACCCCCACCACCAGTCTACTCTCCAC
1 CACCACCTCCGCCAG-TCTCTCACCACCACCACCCGTCTACTCTCCAC
* * *
157142 CACCACCTCCTCCAGTCCTCTCACCCCCACCACCCGTCTACTCACCAC
1 CACCACCTCCGCCAGT-CTCTCACCACCACCACCCGTCTACTCTCCAC
* * * * * *
157190 CACCACCCCCGCCAGTTCGCTCCCCACCACCACCCGTCCATTCTCCTC
1 CACCACCTCCGCCAG-TCTCTCACCACCACCACCCGTCTACTCTCCAC
157238 CACC
1 CACC
157242 CCCAGTTCTC
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
47 1 0.01
48 121 0.96
49 4 0.03
ACGTcount: A:0.18, C:0.59, G:0.06, T:0.17
Consensus pattern (47 bp):
CACCACCTCCGCCAGTCTCTCACCACCACCACCCGTCTACTCTCCAC
Found at i:157106 original size:69 final size:72
Alignment explanation
Indices: 157027--157196 Score: 201
Period size: 69 Copynumber: 2.4 Consensus size: 72
157017 AGTTTACTCT
* * * * * *
157027 CCACCTCCTCCAGTCTACTCACCACCTCCGCCTGTCTACTCACCACCACCACC-CGTCTACT-CT
1 CCACCACCTCCAGTCTACTCACCACCACCACCAGTCTACTCACCACCACCACCTCCTCCACTCCT
157090 C-CACCC
66 CTCACCC
* * *
157096 CCACCACCTCCAGTTCT-CTCACCCCCACCACCAGTCTACTCTCCACCACCACCTCCTCCAGTCC
1 CCACCACCTCCAG-TCTACTCACCACCACCACCAGTCTACTCACCACCACCACCTCCTCCACTCC
157160 TCTCACCC
65 TCTCACCC
157168 CCACCA-C-CC-GTCTACTCACCACCACCACC
1 CCACCACCTCCAGTCTACTCACCACCACCACC
157197 CCCGCCAGTT
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
68 3 0.03
69 58 0.67
70 10 0.12
71 4 0.05
72 11 0.13
ACGTcount: A:0.19, C:0.58, G:0.05, T:0.18
Consensus pattern (72 bp):
CCACCACCTCCAGTCTACTCACCACCACCACCAGTCTACTCACCACCACCACCTCCTCCACTCCT
CTCACCC
Found at i:157172 original size:96 final size:96
Alignment explanation
Indices: 157046--157241 Score: 252
Period size: 96 Copynumber: 2.0 Consensus size: 96
157036 CCAGTCTACT
* * * *
157046 CACCACCTCCGCCTGTCTACTCACCACCACCACCCGTCTACTCTCCACCCCCACCACCTCCAGTT
1 CACCACCTCCGCCAGTCTACTCACCACCACCACCCGTCTACTCACCACCACCACCACCGCCAGTT
* *
157111 CTCTCACCC-CCACCACCAGTCTACTCTCCAC
66 CGCTC-CCCACCACCACCAGTCCACTCTCCAC
* * *
157142 CACCACCTCCTCCAGTCCT-CTCACCCCCACCACCCGTCTACTCACCACCACCACCCCCGCCAGT
1 CACCACCTCCGCCAGT-CTACTCACCACCACCACCCGTCTACTCACCACCACCACCACCGCCAGT
* * *
157206 TCGCTCCCCACCACCACCCGTCCATTCTCCTC
65 TCGCTCCCCACCACCACCAGTCCACTCTCCAC
157238 CACC
1 CACC
157242 CCCAGTTCTC
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
95 3 0.03
96 81 0.94
97 2 0.02
ACGTcount: A:0.18, C:0.59, G:0.06, T:0.17
Consensus pattern (96 bp):
CACCACCTCCGCCAGTCTACTCACCACCACCACCCGTCTACTCACCACCACCACCACCGCCAGTT
CGCTCCCCACCACCACCAGTCCACTCTCCAC
Found at i:157194 original size:21 final size:21
Alignment explanation
Indices: 157006--157307 Score: 119
Period size: 21 Copynumber: 13.5 Consensus size: 21
156996 TGTCGCCTCT
* * *
157006 CCACCACCACCAGTTTACTCT
1 CCACCACCACCCGTCTACTCA
* * *
157027 CCACCTCCTCCAGTCTACTCA
1 CCACCACCACCCGTCTACTCA
* * *
157048 CCACCTCCGCCTGTCTACTCA
1 CCACCACCACCCGTCTACTCA
157069 CCACCACCACCCGTCTACTCTCCA
1 CCACCACCACCCGTCTA--CT-CA
*
157093 CCCCCACCACCTCCAGTTCT-CTCA
1 CCACCACCA-C-CC-G-TCTACTCA
* *
157117 CCCCCACCACCAGTCTACTCTCCA
1 CCACCACCACCCGTCTA--CT-CA
*
157141 CCACCACCTCCTCCAGTCCT-CTCA
1 CCACCACC-AC-CC-GT-CTACTCA
*
157165 CCCCCACCACCCGTCTACTCA
1 CCACCACCACCCGTCTACTCA
* * *
157186 CCACCACCACCCCCGCCAGTTCGCTCC
1 CCACCACCA--CCCGTC---T-ACTCA
* * *
157213 CCACCACCACCCGTCCATTCT
1 CCACCACCACCCGTCTACTCA
*
157234 CCTCCACC-CCCAGTTCT-CTCA
1 CCACCACCACCC-G-TCTACTCA
**
157255 CCACCACCACTGGT-TCACTCA
1 CCACCACCACCCGTCT-ACTCA
* * *
157276 CAACCGCCACCCGTCCACTCA
1 CCACCACCACCCGTCTACTCA
*
157297 CCACCTCCACC
1 CCACCACCACC
157308 TAAACCGGAC
Statistics
Matches: 214, Mismatches: 39, Indels: 56
0.69 0.13 0.18
Matches are distributed among these distances:
19 1 0.00
20 9 0.04
21 113 0.53
22 6 0.03
23 11 0.05
24 39 0.18
25 11 0.05
26 4 0.02
27 15 0.07
28 5 0.02
ACGTcount: A:0.19, C:0.57, G:0.06, T:0.18
Consensus pattern (21 bp):
CCACCACCACCCGTCTACTCA
Found at i:159730 original size:279 final size:279
Alignment explanation
Indices: 159332--159896 Score: 1040
Period size: 279 Copynumber: 2.0 Consensus size: 279
159322 AGCATTTAGT
*
159332 TTTAAATTTCTTTATAGTACATCGCCGTTAAAAACTTGACACATTTAATATCTAAACTATCAGTT
1 TTTAAATTTCTTTATAGTACATCGCCGTTAAAAACTTAACACATTTAATATCTAAACTATCAGTT
*
159397 TTGGTCCGTTTTAGTATCTAAACTTTCAATTTTTTTCCAAAACTTAATGTTAAATCTTGTAGGGG
66 TTGGTCCGTTTTAGTATCTAAACTTTCAATTTTTTTCCAAAACTTAACGTTAAATCTTGTAGGGG
*
159462 TACTAAAACGAAACAAAAACTGAAGTTTTTAACGGCAAGTACTAAAATGAAACAAAAACATAGGT
131 TACTAAAACAAAACAAAAACTGAAGTTTTTAACGGCAAGTACTAAAATGAAACAAAAACATAGGT
** *
159527 ATGATTTTGAAAAAATAGAAAGTTTAGGTACTAAAATGAAATAAAATTGATAGTTTAAGTATTAA
196 ATGATTTTGAAAAAATAGAAAGTTTAGGTACTAAAATGAAATAAAATTGATAGAGTAAGTACTAA
*
159592 ACGTGTCATTTACCCAAAA
261 ACGTGTCATTTAACCAAAA
*
159611 TTTAAATTTCTTTATAGTACATCGCCGTTAAAAACTTAACACATTTAGTATCTAAACTATCAGTT
1 TTTAAATTTCTTTATAGTACATCGCCGTTAAAAACTTAACACATTTAATATCTAAACTATCAGTT
* *
159676 TTGGTCCGTTTTAGTATCTAAACTTTCAATTTTTTTTCAAAAGTTAACGTTAAATCTTGTAGGGG
66 TTGGTCCGTTTTAGTATCTAAACTTTCAATTTTTTTCCAAAACTTAACGTTAAATCTTGTAGGGG
159741 TACTAAAACAAAACAAAAACTGAAGTTTTTAACGGCAAGTACTAAAATGAAACAAAAACATAGGT
131 TACTAAAACAAAACAAAAACTGAAGTTTTTAACGGCAAGTACTAAAATGAAACAAAAACATAGGT
159806 ATGATTTTGAAAAAATAGAAAGTTTAGGTACTAAAATGAAATAAAATTGATAGAGTAAGTACTAA
196 ATGATTTTGAAAAAATAGAAAGTTTAGGTACTAAAATGAAATAAAATTGATAGAGTAAGTACTAA
159871 ACGTGTCATTTAACCAAAA
261 ACGTGTCATTTAACCAAAA
159890 TTTAAAT
1 TTTAAAT
159897 ATCCGTTTGA
Statistics
Matches: 276, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
279 276 1.00
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (279 bp):
TTTAAATTTCTTTATAGTACATCGCCGTTAAAAACTTAACACATTTAATATCTAAACTATCAGTT
TTGGTCCGTTTTAGTATCTAAACTTTCAATTTTTTTCCAAAACTTAACGTTAAATCTTGTAGGGG
TACTAAAACAAAACAAAAACTGAAGTTTTTAACGGCAAGTACTAAAATGAAACAAAAACATAGGT
ATGATTTTGAAAAAATAGAAAGTTTAGGTACTAAAATGAAATAAAATTGATAGAGTAAGTACTAA
ACGTGTCATTTAACCAAAA
Found at i:162170 original size:2 final size:2
Alignment explanation
Indices: 162163--162196 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
162153 ATCTTAACTC
162163 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
162197 TGTTGATGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:177174 original size:11 final size:12
Alignment explanation
Indices: 177148--177181 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
177138 AAATATAGTA
177148 AAAATATAAAAT
1 AAAATATAAAAT
*
177160 ATAAAAATAAAAT
1 A-AAATATAAAAT
177173 AAAATATAA
1 AAAATATAA
177182 TTATAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATATAAAAT
Found at i:177207 original size:17 final size:17
Alignment explanation
Indices: 177150--177197 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
177140 ATATAGTAAA
**
177150 AATATAAAATATAAAAAT
1 AATA-AAAATATAATTAT
*
177168 AAAATAAAATATAATTAT
1 AATA-AAAATATAATTAT
177186 AATAAAAATATA
1 AATAAAAATATA
177198 TTTTATATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAAAATATAATTAT
Found at i:178746 original size:15 final size:15
Alignment explanation
Indices: 178728--178760 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
178718 CTCTGACACA
178728 AAAACCTCGAATCCC
1 AAAACCTCGAATCCC
178743 AAAACCTCGAATCCC
1 AAAACCTCGAATCCC
178758 AAA
1 AAA
178761 TCCCCGACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.36, G:0.06, T:0.12
Consensus pattern (15 bp):
AAAACCTCGAATCCC
Found at i:186408 original size:29 final size:30
Alignment explanation
Indices: 186337--186442 Score: 178
Period size: 31 Copynumber: 3.5 Consensus size: 30
186327 CCATAAATAC
*
186337 AAACCGATTGTTTAGGTATTAAAATCGATTA
1 AAACCGATTGTTTAGGTATTAAAAT-GACTA
186368 AAACCGATTGTTTAGGTATTAAAAT-ACTA
1 AAACCGATTGTTTAGGTATTAAAATGACTA
186397 AAACCGATTGTTTAGGTATTAAAATAGACTA
1 AAACCGATTGTTTAGGTATTAAAAT-GACTA
186428 AAACCGATTGTTTAG
1 AAACCGATTGTTTAG
186443 ATGCAAAACG
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
29 28 0.39
31 44 0.61
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (30 bp):
AAACCGATTGTTTAGGTATTAAAATGACTA
Found at i:187052 original size:18 final size:18
Alignment explanation
Indices: 187028--187073 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 18
187018 GAGGATGTCA
187028 ACAATATGGTTCTTGAAT
1 ACAATATGGTTCTTGAAT
*
187046 TCAATATAATGGTTCTTGAAT
1 AC-A-AT-ATGGTTCTTGAAT
187067 ACAATAT
1 ACAATAT
187074 TCAATTGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
18 3 0.13
19 3 0.13
20 3 0.13
21 14 0.61
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (18 bp):
ACAATATGGTTCTTGAAT
Found at i:187057 original size:21 final size:21
Alignment explanation
Indices: 187033--187073 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
187023 TGTCAACAAT
*
187033 ATGGTTCTTGAATTCAATATA
1 ATGGTTCTTGAATACAATATA
187054 ATGGTTCTTGAATACAATAT
1 ATGGTTCTTGAATACAATAT
187074 TCAATTGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (21 bp):
ATGGTTCTTGAATACAATATA
Found at i:194293 original size:29 final size:29
Alignment explanation
Indices: 194251--194327 Score: 120
Period size: 29 Copynumber: 2.7 Consensus size: 29
194241 AGCCGTAGGT
*
194251 CGCCATGGC-ATCCGGGTGAGCTTGGAGGA
1 CGCCAT-GCAATCCGGGCGAGCTTGGAGGA
*
194280 CGCCATGCAATCCGGGCGAGCTTGTAGGA
1 CGCCATGCAATCCGGGCGAGCTTGGAGGA
194309 CGCCATGCAATCCGGGCGA
1 CGCCATGCAATCCGGGCGA
194328 CATACGGGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
28 2 0.04
29 43 0.96
ACGTcount: A:0.19, C:0.29, G:0.36, T:0.16
Consensus pattern (29 bp):
CGCCATGCAATCCGGGCGAGCTTGGAGGA
Found at i:194375 original size:9 final size:9
Alignment explanation
Indices: 194340--194379 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
194330 TACGGGGTGA
*
194340 CATACGAAC
1 CATACGAGC
194349 CATACGAGC
1 CATACGAGC
194358 CATACACGAGC
1 CAT--ACGAGC
194369 CATACGAGC
1 CATACGAGC
194378 CA
1 CA
194380 ATGGAGAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 19 0.68
11 9 0.32
ACGTcount: A:0.38, C:0.35, G:0.17, T:0.10
Consensus pattern (9 bp):
CATACGAGC
Found at i:194445 original size:29 final size:29
Alignment explanation
Indices: 194386--194445 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
194376 GCCAATGGAG
**
194386 AGGTCGCCATGCAGTCCCGGCGACCTTGT
1 AGGTCGCCATGCAGTCCCGGCGACCAAGT
*
194415 AGGTCGCCATGTAGTCCCGGCGACCAAGT
1 AGGTCGCCATGCAGTCCCGGCGACCAAGT
194444 AG
1 AG
194446 TTGATCCCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (29 bp):
AGGTCGCCATGCAGTCCCGGCGACCAAGT
Found at i:195150 original size:45 final size:48
Alignment explanation
Indices: 195101--195191 Score: 125
Period size: 45 Copynumber: 2.0 Consensus size: 48
195091 TTATATAGTT
* *
195101 AAAAAATAATTAATTAGTTTGT-TTTGTT-AATCGTT-AGTTATATAA
1 AAAAAATAATTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATATAA
* *
195146 AAAAATTATTTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATAT
1 AAAAAATAATTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATAT
195192 TTGTTTGTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
45 20 0.51
46 5 0.13
47 6 0.15
48 8 0.21
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.47
Consensus pattern (48 bp):
AAAAAATAATTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATATAA
Found at i:195385 original size:16 final size:16
Alignment explanation
Indices: 195353--195399 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
195343 TTTAAAAAGT
*
195353 TTAGTTTGTTAGT-TTA
1 TTAGTTTATTA-TATTA
195369 TTAGTTTATTATATTA
1 TTAGTTTATTATATTA
*
195385 TAAG-TTATTATATTA
1 TTAGTTTATTATATTA
195400 AAGTTTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.60
Consensus pattern (16 bp):
TTAGTTTATTATATTA
Found at i:195394 original size:15 final size:14
Alignment explanation
Indices: 195374--195404 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
195364 GTTTATTAGT
195374 TTATTATATTATAAG
1 TTATTATATTA-AAG
195389 TTATTATATTAAAG
1 TTATTATATTAAAG
195403 TT
1 TT
195405 TAGTGTTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TTATTATATTAAAG
Found at i:197576 original size:17 final size:17
Alignment explanation
Indices: 197554--197586 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
197544 CAATGATTTT
*
197554 TAGTATCAAATCATTAC
1 TAGTATCAAATAATTAC
197571 TAGTATCAAATAATTA
1 TAGTATCAAATAATTA
197587 AATATTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (17 bp):
TAGTATCAAATAATTAC
Found at i:197859 original size:35 final size:37
Alignment explanation
Indices: 197778--197864 Score: 99
Period size: 38 Copynumber: 2.4 Consensus size: 37
197768 TTAGTATTCT
* * *
197778 ATAATTATTAGT-AATAATTATTAAATCATTAGTATTAA
1 ATAATTATTA-TAAATAATTACTAAATCAATAG-ACTAA
*
197816 ATCATTATTATAAATAATTACTAAAT-AATA-ACTAA
1 ATAATTATTATAAATAATTACTAAATCAATAGACTAA
197851 ATAATTATTATAAA
1 ATAATTATTATAAA
197865 ATCATTATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
35 17 0.40
37 4 0.09
38 22 0.51
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (37 bp):
ATAATTATTATAAATAATTACTAAATCAATAGACTAA
Found at i:197885 original size:12 final size:13
Alignment explanation
Indices: 197794--198037 Score: 116
Period size: 14 Copynumber: 18.1 Consensus size: 13
197784 ATTAGTAATA
197794 ATTATTAAATCATT
1 ATTA-TAAATCATT
*
197808 AGTATTAAATCATT
1 ATTA-TAAATCATT
197822 ATTATAAAT-A--
1 ATTATAAATCATT
197832 ATTACTAAAT-A--
1 ATTA-TAAATCATT
* *
197843 ATAACTAAATAATT
1 ATTA-TAAATCATT
197857 ATTATAAAATCATT
1 ATTAT-AAATCATT
*
197871 ATTAT-AATGATT
1 ATTATAAATCATT
197883 ATTATCAAATCATT
1 ATTAT-AAATCATT
197897 ACTAAATCATCAAATCATT
1 A-T---T-AT-AAATCATT
*
197916 AAATATTTAAATCATT
1 --AT-TATAAATCATT
197932 A-T-TAAATCATT
1 ATTATAAATCATT
* *
197943 TTTAT-AATGATT
1 ATTATAAATCATT
197955 ATTACTAAATCATT
1 ATTA-TAAATCATT
*
197969 ATTAT-AATGATT
1 ATTATAAATCATT
197981 ATTATCAAATCATT
1 ATTAT-AAATCATT
* *
197995 ACTAT-AATGATT
1 ATTATAAATCATT
*
198007 ATTATATATAATGATT
1 A-T-TATA-AATCATT
198023 ATTATCAAATCATT
1 ATTAT-AAATCATT
198037 A
1 A
198038 CTAAATCATC
Statistics
Matches: 187, Mismatches: 18, Indels: 50
0.73 0.07 0.20
Matches are distributed among these distances:
10 4 0.02
11 24 0.13
12 42 0.22
13 9 0.05
14 72 0.39
15 3 0.02
16 16 0.09
17 1 0.01
18 3 0.02
19 11 0.06
20 1 0.01
21 1 0.01
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.43
Consensus pattern (13 bp):
ATTATAAATCATT
Found at i:198018 original size:16 final size:16
Alignment explanation
Indices: 197997--198027 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
197987 AAATCATTAC
197997 TATAATGATTATTATA
1 TATAATGATTATTATA
198013 TATAATGATTATTAT
1 TATAATGATTATTAT
198028 CAAATCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
TATAATGATTATTATA
Found at i:198078 original size:35 final size:34
Alignment explanation
Indices: 197889--198081 Score: 103
Period size: 35 Copynumber: 5.5 Consensus size: 34
197879 GATTATTATC
*
197889 AAATCATTACTAAATCATCAAATCATTAAATATTT
1 AAATCATTATTAAATCAT-AAATCATTAAATATTT
* * *
197924 AAATCATTATTAAATCATTTTTATAATGATT-ATTA-CT
1 AAATCATTATTAAATCA----TA-AATCATTAAATATTT
* * * *
197961 AAATCATTATTATAATGAT-TATTATCAAATCATTACT
1 AAATCATTATTA-AATCATAAATCATTAAAT-ATT--T
* * * * *
197998 ATAATGATTATTATAT-AT-AATGATT-ATTA-TC
1 A-AATCATTATTAAATCATAAATCATTAAATATTT
*
198029 AAATCATTACTAAATCATCAAATCATTAAATATTT
1 AAATCATTATTAAATCAT-AAATCATTAAATATTT
198064 AAATCATTATTAAATCAT
1 AAATCATTATTAAATCAT
198082 TATTAAATCA
Statistics
Matches: 117, Mismatches: 24, Indels: 34
0.67 0.14 0.19
Matches are distributed among these distances:
30 11 0.09
31 3 0.03
32 4 0.03
33 9 0.08
34 6 0.05
35 36 0.31
36 6 0.05
37 17 0.15
38 18 0.15
39 7 0.06
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.42
Consensus pattern (34 bp):
AAATCATTATTAAATCATAAATCATTAAATATTT
Found at i:198098 original size:14 final size:11
Alignment explanation
Indices: 197794--198112 Score: 89
Period size: 11 Copynumber: 26.9 Consensus size: 11
197784 ATTAGTAATA
197794 ATTATTAAATC
1 ATTATTAAATC
197805 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
197819 ATTATTATAAATA
1 ATTA-T-TAAATC
* *
197832 ATTACTAAATA
1 ATTATTAAATC
* * *
197843 ATAACTAAATA
1 ATTATTAAATC
197854 ATTATTATAAAATC
1 ATTA-T-T-AAATC
*
197868 ATTATTATAATG
1 ATTATTA-AATC
197880 ATTATTATCAAATC
1 ATTA-T-T-AAATC
*
197894 ATTACTAAATC
1 ATTATTAAATC
197905 ATCAAATCATTAAAT-
1 AT----T-ATTAAATC
197920 A-T-TTAAATC
1 ATTATTAAATC
197929 ATTATTAAATC
1 ATTATTAAATC
* *
197940 ATTTTTATAATG
1 ATTATTA-AATC
197952 ATTATTACTAAATC
1 ATTA-T--TAAATC
*
197966 ATTATTATAATG
1 ATTATTA-AATC
197978 ATTATTATCAAATC
1 ATTA-T-T-AAATC
* *
197992 ATTACTATAATG
1 ATTATTA-AATC
*
198004 ATTATTATAT-
1 ATTATTAAATC
* * *
198014 A-TAAT-GATT
1 ATTATTAAATC
*
198023 ATTATCAAATC
1 ATTATTAAATC
*
198034 ATTACTAAATC
1 ATTATTAAATC
198045 ATCAAATCATTAAAT-
1 AT----T-ATTAAATC
198060 A-T-TTAAATC
1 ATTATTAAATC
198069 ATTATTAAATC
1 ATTATTAAATC
198080 ATTATTAAATC
1 ATTATTAAATC
* *
198091 ATTTTTATAATG
1 ATTATTA-AATC
*
198103 ATTAATAAAT
1 ATTATTAAAT
198113 ACATAGAAAT
Statistics
Matches: 234, Mismatches: 33, Indels: 82
0.67 0.09 0.23
Matches are distributed among these distances:
8 14 0.06
9 6 0.03
10 7 0.03
11 88 0.38
12 42 0.18
13 16 0.07
14 41 0.18
15 8 0.03
16 12 0.05
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.43
Consensus pattern (11 bp):
ATTATTAAATC
Found at i:198106 original size:23 final size:25
Alignment explanation
Indices: 197781--198106 Score: 159
Period size: 26 Copynumber: 13.2 Consensus size: 25
197771 GTATTCTATA
* *
197781 ATTATTAGT-AATAATTATTA-AATC
1 ATTATTA-TAAATCATTATTATAATG
*
197805 ATTAGTATTAAATCATTATTATAA--
1 ATTATTA-TAAATCATTATTATAATG
* * * * *
197829 ATAATTACTAAATAATAACTA-AATA
1 ATTATTA-TAAATCATTATTATAATG
197854 ATTATTATAAAATCATTATTATAATG
1 ATTATTAT-AAATCATTATTATAATG
* *
197880 ATTATTATCAAATCATTACTA-AATC
1 ATTATTAT-AAATCATTATTATAATG
* * *
197905 ATCAAATCATTAAAT-A-T-TTA-AATC
1 AT--TATTA-TAAATCATTATTATAATG
*
197929 ATTA-T-TAAATCATTTTTATAATG
1 ATTATTATAAATCATTATTATAATG
197952 ATTATTACTAAATCATTATTATAATG
1 ATTATTA-TAAATCATTATTATAATG
*
197978 ATTATTATCAAATCATTACTATAATG
1 ATTATTAT-AAATCATTATTATAATG
*
198004 ATTATTATATATAATGATTATTATCAA--
1 ATTA-T-TATA-AATCATTATTAT-AATG
* * * * *
198031 ATCATTACTAAATCATCA-AATCATTA
1 ATTATTA-TAAATCATTATTAT-AATG
* *
198057 AATATT-TAAATCATTATTA-AATC
1 ATTATTATAAATCATTATTATAATG
*
198080 ATTA-T-TAAATCATTTTTATAATG
1 ATTATTATAAATCATTATTATAATG
198103 ATTA
1 ATTA
198107 ATAAATACAT
Statistics
Matches: 235, Mismatches: 41, Indels: 53
0.71 0.12 0.16
Matches are distributed among these distances:
19 5 0.02
20 1 0.00
21 1 0.00
22 17 0.07
23 21 0.09
24 45 0.19
25 41 0.17
26 76 0.32
27 12 0.05
28 14 0.06
29 2 0.01
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (25 bp):
ATTATTATAAATCATTATTATAATG
Found at i:198138 original size:140 final size:138
Alignment explanation
Indices: 197794--198093 Score: 398
Period size: 140 Copynumber: 2.2 Consensus size: 138
197784 ATTAGTAATA
* * * * *
197794 ATTATTAAATCATTAGTATTAAATCATTATTA-TAAAT-AAT-TACTAA--ATAATAACTAAATA
1 ATTATTAAATCATTATTA-T-AATCATTATTACTAAATCATTATAATAATGATAATATC-AAATC
* * *
197854 ATTATTATAA-AATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAA
63 ATTACTATAATGATTATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAA
197918 ATATTTAAATC
128 ATATTTAAATC
* * * *
197929 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1 ATTATTAAATCATTATTATAATCATTATTACTAAATCATTATAATAATGA-TAATATCAAATCAT
197994 TACTATAATGATTATTATATATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
65 TACTATAATGATTATTAT-TATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
198059 TATTTAAATC
129 TATTTAAATC
198069 ATTATTAAATCATTATTA-AATCATT
1 ATTATTAAATCATTATTATAATCATT
198094 TTTATAATGA
Statistics
Matches: 143, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
133 10 0.07
134 6 0.04
135 18 0.13
136 4 0.03
138 14 0.10
139 18 0.13
140 73 0.51
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.43
Consensus pattern (138 bp):
ATTATTAAATCATTATTATAATCATTATTACTAAATCATTATAATAATGATAATATCAAATCATT
ACTATAATGATTATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATA
TTTAAATC
Found at i:201850 original size:28 final size:30
Alignment explanation
Indices: 201810--201872 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
201800 ATTTTTTATA
*
201810 TAATATAATATATAACTTAAACTAATAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
201840 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
201868 TAATA
1 TAATA
201873 ATTTATACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 25 0.78
29 1 0.03
30 6 0.19
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:201879 original size:28 final size:28
Alignment explanation
Indices: 201814--201879 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
201804 TTTATATAAT
*
201814 ATAATATATAACTTAAACTAATAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
201842 AT-ATAATATAACTTAAACTAACAAACTA
1 ATAAT-ATATAACTTAAACTAACAAACTA
*
201870 ATAATTTATA
1 ATAATATATA
201880 CTAACAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.06
28 30 0.88
29 2 0.06
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:201882 original size:21 final size:21
Alignment explanation
Indices: 201849--201897 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
201839 CTAATATAAT
201849 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
201870 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
201891 ATTAACT
1 A-TAACT
201898 ATATTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:202290 original size:21 final size:21
Alignment explanation
Indices: 202265--202336 Score: 58
Period size: 21 Copynumber: 3.3 Consensus size: 21
202255 ACGCAACTAT
202265 GGATGCAACACATGCAGCTAC
1 GGATGCAACACATGCAGCTAC
* *
202286 GGATGCAGGA-ATC-TCCCAGCTAT
1 GGATGCA--ACA-CAT-GCAGCTAC
* *
202309 GGATGCAACGCATGTAGCTAC
1 GGATGCAACACATGCAGCTAC
202330 GGATGCA
1 GGATGCA
202337 GGAATCTCCC
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
21 21 0.54
22 3 0.08
23 15 0.38
ACGTcount: A:0.29, C:0.25, G:0.28, T:0.18
Consensus pattern (21 bp):
GGATGCAACACATGCAGCTAC
Found at i:202311 original size:44 final size:43
Alignment explanation
Indices: 202261--202380 Score: 195
Period size: 44 Copynumber: 2.7 Consensus size: 43
202251 AATAACGCAA
*
202261 CTATGGATGCAACACATGCAGCTACGGATGCAGGAATCTCCCAG
1 CTATGGATGCAACGCATG-AGCTACGGATGCAGGAATCTCCCAG
202305 CTATGGATGCAACGCATGTAGCTACGGATGCAGGAATCTCCCAG
1 CTATGGATGCAACGCATG-AGCTACGGATGCAGGAATCTCCCAG
*
202349 CTATGGATGCAACGCATGAGGCTATGGATGCA
1 CTATGGATGCAACGCATGA-GCTACGGATGCA
202381 ACGGAGCTTG
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
43 1 0.01
44 71 0.99
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.20
Consensus pattern (43 bp):
CTATGGATGCAACGCATGAGCTACGGATGCAGGAATCTCCCAG
Found at i:202312 original size:23 final size:23
Alignment explanation
Indices: 202279--202359 Score: 87
Period size: 23 Copynumber: 3.6 Consensus size: 23
202269 GCAACACATG
202279 CAGCTACGGATGCAGGAATCTCC
1 CAGCTACGGATGCAGGAATCTCC
* * * *
202302 CAGCTATGGATGCAACGCATGT--
1 CAGCTACGGATGC-AGGAATCTCC
202324 -AGCTACGGATGCAGGAATCTCC
1 CAGCTACGGATGCAGGAATCTCC
*
202346 CAGCTATGGATGCA
1 CAGCTACGGATGCA
202360 ACGCATGAGG
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
20 5 0.11
21 11 0.24
23 24 0.53
24 5 0.11
ACGTcount: A:0.27, C:0.26, G:0.27, T:0.20
Consensus pattern (23 bp):
CAGCTACGGATGCAGGAATCTCC
Found at i:202433 original size:30 final size:30
Alignment explanation
Indices: 202393--202452 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
202383 GGAGCTTGGT
202393 CGCCGAGACTCCATGGCGACCTACCTACCA
1 CGCCGAGACTCCATGGCGACCTACCTACCA
*
202423 CGCCGTGACTCCATGGCGACCTACCTACCA
1 CGCCGAGACTCCATGGCGACCTACCTACCA
202453 TGGCGACCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.22, C:0.43, G:0.20, T:0.15
Consensus pattern (30 bp):
CGCCGAGACTCCATGGCGACCTACCTACCA
Found at i:202455 original size:17 final size:17
Alignment explanation
Indices: 202433--202469 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
202423 CGCCGTGACT
202433 CCATGGCGACCTACCTA
1 CCATGGCGACCTACCTA
202450 CCATGGCGACCTACCTA
1 CCATGGCGACCTACCTA
202467 CCA
1 CCA
202470 CGCCGTGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.43, G:0.16, T:0.16
Consensus pattern (17 bp):
CCATGGCGACCTACCTA
Found at i:202472 original size:47 final size:47
Alignment explanation
Indices: 202403--202493 Score: 182
Period size: 47 Copynumber: 1.9 Consensus size: 47
202393 CGCCGAGACT
202403 CCATGGCGACCTACCTACCACGCCGTGACTCCATGGCGACCTACCTA
1 CCATGGCGACCTACCTACCACGCCGTGACTCCATGGCGACCTACCTA
202450 CCATGGCGACCTACCTACCACGCCGTGACTCCATGGCGACCTAC
1 CCATGGCGACCTACCTACCACGCCGTGACTCCATGGCGACCTAC
202494 ATCGTTCGAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.21, C:0.43, G:0.20, T:0.16
Consensus pattern (47 bp):
CCATGGCGACCTACCTACCACGCCGTGACTCCATGGCGACCTACCTA
Found at i:202537 original size:20 final size:20
Alignment explanation
Indices: 202512--202549 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
202502 ACGTGCATGG
*
202512 CCCATGCACAGTTCCCACGT
1 CCCATGCACAGCTCCCACGT
202532 CCCATGCACAGCTCCCAC
1 CCCATGCACAGCTCCCAC
202550 ATGCATCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.50, G:0.13, T:0.16
Consensus pattern (20 bp):
CCCATGCACAGCTCCCACGT
Done.