genome.fa.s8934.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008934.1 Hibiscus syriacus cultivar Beakdansim tig00112250_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151386

Tables:   1   2   

This is table  1  of  2  ( 121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8158--8275	60	2.0	60	100	0	236	47	5	20	27	1.71
9974--10003	6	5.0	6	91	0	51	66	0	13	20	1.24
11525--11583	22	2.8	21	84	7	66	25	18	25	30	1.98
11525--11585	21	2.9	20	85	7	68	26	18	26	29	1.98
14848--14988	70	2.0	70	97	0	264	31	7	19	41	1.79
16866--16911	22	2.1	22	87	0	65	30	19	19	30	1.97
19840--19906	33	2.0	33	100	0	134	34	23	11	29	1.91
20543--20606	33	1.9	33	100	0	128	34	25	10	29	1.90
19723--21797	698	3.0	699	92	3	3437	38	17	9	34	1.81
22836--22866	16	2.0	15	93	6	53	58	16	6	19	1.59
38632--38695	3	22.0	3	81	12	62	65	1	4	28	1.21
38895--39353	46	10.5	45	72	14	216	25	19	29	25	1.98
38844--39314	43	10.9	41	70	12	229	24	19	30	25	1.98
38893--39359	130	3.6	130	95	0	846	24	19	30	25	1.98
39471--39521	26	1.9	27	84	11	70	41	13	17	27	1.87
39545--39624	40	2.0	40	95	0	142	36	11	21	31	1.88
39637--39704	32	2.1	32	91	0	109	38	11	8	41	1.73
39674--39820	63	2.3	63	80	10	176	44	12	11	31	1.77
40009--40202	67	2.9	67	86	3	223	46	10	12	29	1.75
40060--40202	67	2.2	66	94	1	250	46	10	11	32	1.74
40102--40297	29	6.6	30	75	13	149	46	13	11	28	1.78
40563--40659	36	2.7	35	79	9	97	32	13	18	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40599--40831	105	2.3	101	85	6	290	37	12	19	30	1.89
40822--40998	96	1.9	95	79	5	205	40	11	15	32	1.83
41272--41317	4	12.2	4	82	13	62	26	0	21	52	1.47
41274--41309	18	2.1	17	94	5	63	25	0	22	52	1.47
42533--42569	11	3.4	11	84	0	56	5	8	13	72	1.24
42522--42572	22	2.3	22	89	0	84	5	5	9	78	1.08
42531--42570	12	3.5	12	86	13	66	7	7	12	72	1.27
42581--42628	14	3.9	12	74	15	53	2	14	8	75	1.13
42560--42604	21	2.2	22	88	11	69	2	20	8	68	1.27
43221--43311	46	2.0	45	82	8	112	39	10	25	24	1.88
45738--45799	32	2.0	32	96	3	117	61	9	14	14	1.57
48924--48964	18	2.3	18	80	20	50	0	12	7	80	0.90
49442--49505	3	22.0	3	81	12	62	65	1	4	28	1.21
52249--52302	22	2.5	22	100	0	108	37	14	9	38	1.79
52487--52514	12	2.3	12	100	0	56	25	17	25	32	1.97
52515--52602	12	7.2	12	71	5	68	32	11	14	40	1.82
52547--52598	26	2.0	26	100	0	104	26	11	19	42	1.85
52602--52686	10	8.5	10	86	0	107	0	10	49	40	1.37
52603--52686	8	10.8	8	88	5	118	0	10	50	39	1.37
52685--52739	16	3.4	16	82	0	56	29	9	20	41	1.82
52694--52739	8	5.8	8	78	0	56	26	10	19	43	1.84
52714--52767	16	3.4	16	86	0	72	33	11	16	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52714--52778	16	4.1	16	83	0	67	33	13	15	36	1.87
52801--52830	14	2.1	14	93	0	51	10	13	33	43	1.77
52825--52887	10	6.5	10	85	7	85	0	23	52	23	1.47
52827--52966	18	7.8	18	73	6	86	2	16	50	31	1.57
52857--52965	8	12.9	8	73	7	65	2	12	50	33	1.55
52823--52974	10	15.6	10	73	13	75	1	16	49	32	1.57
52883--52957	36	2.1	36	87	5	107	4	9	49	37	1.54
52935--52974	18	2.2	18	95	0	71	0	12	47	40	1.41
52919--52973	16	3.3	16	78	9	56	1	12	49	36	1.52
53657--53689	13	2.4	14	90	10	50	48	0	0	51	1.00
53911--54016	39	2.7	39	79	13	128	45	2	16	35	1.62
54027--54063	12	3.1	12	88	11	58	83	0	0	16	0.64
54027--54062	17	2.1	17	100	0	72	83	0	0	16	0.65
54398--54475	31	2.5	31	81	10	95	51	8	8	30	1.64
60393--60562	92	1.8	92	83	5	227	49	8	14	28	1.71
64455--64494	21	1.9	21	89	0	62	25	40	25	10	1.86
68799--68824	2	13.0	2	100	0	52	50	0	0	50	1.00
72045--72083	14	3.0	12	82	17	51	58	0	2	38	1.12
72049--72078	14	2.1	14	100	0	60	66	0	0	33	0.92
73814--73840	3	9.0	3	100	0	54	33	0	0	66	0.92
75052--75100	23	2.1	23	96	0	89	30	10	16	42	1.81
75408--75480	37	2.0	36	86	5	103	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75620--75671	16	2.9	17	86	13	70	34	19	0	46	1.50
75996--76022	2	13.5	2	100	0	54	48	0	0	51	1.00
77227--77506	30	9.5	30	76	7	234	27	38	10	23	1.87
77227--77506	87	3.2	87	88	4	377	27	38	10	23	1.87
77227--77506	57	4.8	58	78	9	248	27	38	10	23	1.87
77440--77577	72	1.9	71	91	1	222	25	36	13	23	1.92
77529--77712	45	4.1	44	76	6	138	24	36	12	26	1.91
77585--77724	45	3.1	45	76	8	167	23	38	11	26	1.89
77703--77736	15	2.3	15	89	0	50	8	35	23	32	1.86
78167--78280	20	5.5	20	75	6	84	33	50	15	0	1.44
78166--78525	12	29.5	12	77	6	204	33	49	16	1	1.53
78210--78524	18	17.2	18	76	9	242	33	48	16	1	1.54
78206--78474	6	45.5	6	79	5	244	32	49	16	1	1.55
88426--88469	17	2.6	17	77	0	52	59	0	0	40	0.98
93837--93870	2	17.0	2	100	0	68	50	0	0	50	1.00
94349--94440	39	2.4	39	85	3	123	38	15	2	44	1.58
94692--94741	18	2.5	20	84	12	68	44	4	0	52	1.20
94711--94768	24	2.2	28	77	22	72	37	3	0	58	1.15
94700--94762	24	2.6	25	81	18	80	42	4	0	52	1.22
99285--99354	35	2.0	35	91	0	113	31	15	15	37	1.89
103271--103352	42	2.0	42	87	0	119	30	21	21	25	1.99
103073--103917	215	4.0	215	93	1	1389	31	19	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111477--111516	17	2.2	19	86	8	57	55	2	0	42	1.13
116711--116758	21	2.3	21	96	0	87	27	14	8	50	1.71
117517--117680	67	2.4	67	92	2	267	31	26	17	25	1.97
118819--119387	281	2.0	282	97	1	1079	49	10	13	26	1.74
119629--119654	4	6.5	4	100	0	52	76	0	0	23	0.78
126628--126737	16	7.1	16	80	6	102	61	17	3	17	1.48
126639--126727	32	2.9	31	86	8	121	61	16	4	16	1.50
127419--127470	16	3.2	16	83	0	59	63	19	1	15	1.40
127565--127655	33	2.7	33	89	1	137	43	4	18	32	1.70
127588--127717	26	4.7	26	79	12	111	46	7	15	30	1.74
127631--127704	13	5.7	13	76	9	62	48	10	10	29	1.72
129554--129698	15	9.7	15	66	14	84	24	13	15	46	1.82
129555--129698	30	4.8	29	72	12	121	24	13	15	46	1.82
129543--129698	60	2.6	60	88	2	233	23	14	16	46	1.83
130410--130463	18	2.9	19	76	15	60	46	18	3	31	1.67
130424--130471	17	2.9	16	77	17	53	45	18	2	33	1.61
130503--130562	17	3.4	18	78	17	72	46	13	1	38	1.53
130883--130907	2	12.5	2	100	0	50	52	0	0	48	1.00
134480--134523	16	2.8	16	93	3	72	40	29	13	15	1.86
134495--134530	16	2.2	16	90	0	54	44	25	13	16	1.85
139048--139095	14	3.5	13	77	8	51	75	0	0	25	0.81
140365--140651	24	12.5	22	68	15	102	42	8	3	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140361--140661	91	3.3	91	86	7	369	42	8	3	45	1.51
141533--141638	56	1.9	55	92	1	176	29	20	19	30	1.97
141556--141642	27	3.1	27	63	11	68	26	20	22	29	1.99
142139--142262	61	2.0	61	93	3	214	25	10	21	42	1.84
148237--148301	29	2.2	29	97	0	121	36	20	15	27	1.92
149390--149446	21	2.7	21	91	2	96	38	15	15	29	1.89
150160--150204	23	2.0	21	83	8	54	46	0	24	28	1.53
150431--150504	18	4.1	18	86	6	87	24	17	28	29	1.97
150736--151085	6	58.8	6	97	1	598	35	0	30	33	1.58
151037--151108	12	6.2	12	88	6	58	44	0	23	31	1.54

Tables:   1   2