Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01008934.1 Hibiscus syriacus cultivar Beakdansim tig00112250_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 151386
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


File 2 of 2

Found at i:151105 original size:29 final size:29

Alignment explanation


    Indices: 151034--151105  Score: 83
    Period size: 29  Copynumber: 2.5  Consensus size: 29

     151024 ATGGTAATGG

                     *                *  
     151034 TAATGATAATGATAATGATAATGATATGA
          1 TAATGATAAGGATAATGATAATGATAGGA

                     *                    
     151063 TAATGATAATGATAATGATAATGATAAGGA
          1 TAATGATAAGGATAATGATAATGAT-AGGA

              *    *      
     151093 -AGTGATTAGGATA
          1 TAATGATAAGGATA

     151106 GTGTTGAGAT


Statistics
Matches: 38,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
  29   35  0.92
  30    3  0.08

ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32


Consensus pattern (29 bp):   
TAATGATAAGGATAATGATAATGATAGGA

Done.