Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008935.1 Hibiscus syriacus cultivar Beakdansim tig00112253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1775090
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 9
Found at i:305399 original size:21 final size:21
Alignment explanation
Indices: 305371--305422 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
305361 GTCTTTCGGG
305371 ACATATATGTAATTCAGTGGA
1 ACATATATGTAATTCAGTGGA
*
305392 ATATATATGTAATTCAGTGGA
1 ACATATATGTAATTCAGTGGA
305413 ACATATATGT
1 ACATATATGT
305423 GGTACTTCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (21 bp):
ACATATATGTAATTCAGTGGA
Found at i:305518 original size:21 final size:20
Alignment explanation
Indices: 305492--305553 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 20
305482 CCTTCGGGAG
*
305492 ATAGTGGTCTTTTGGGACAA
1 ATAGTGGTCCTTTGGGACAA
*
305512 ATCAGTGGTCCTTAGGGAC--
1 AT-AGTGGTCCTTTGGGACAA
*
305531 ATAGTGGTCCTTTGGGAAAA
1 ATAGTGGTCCTTTGGGACAA
305551 ATA
1 ATA
305554 TGCAGTGCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 14 0.40
19 2 0.06
20 5 0.14
21 14 0.40
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (20 bp):
ATAGTGGTCCTTTGGGACAA
Found at i:305538 original size:18 final size:18
Alignment explanation
Indices: 305480--305547 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
305470 TTAAGGAGTA
* *
305480 GTCCTTCGGGAGATAGTG
1 GTCCTTTGGGACATAGTG
*
305498 GTCTTTTGGGACAAATCAGTG
1 GTCCTTTGGGAC--AT-AGTG
*
305519 GTCCTTAGGGACATAGTG
1 GTCCTTTGGGACATAGTG
305537 GTCCTTTGGGA
1 GTCCTTTGGGA
305548 AAAATATGCA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
18 23 0.56
19 2 0.05
20 2 0.05
21 14 0.34
ACGTcount: A:0.19, C:0.16, G:0.34, T:0.31
Consensus pattern (18 bp):
GTCCTTTGGGACATAGTG
Found at i:305862 original size:2 final size:2
Alignment explanation
Indices: 305855--305882 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
305845 TAGTGAACGC
305855 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
305883 CGCACATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:310900 original size:21 final size:21
Alignment explanation
Indices: 310876--310915 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
310866 TAATTAAAGG
310876 AAAA-GATATATAGATAAGTAT
1 AAAAGGATAT-TAGATAAGTAT
310897 AAAAGGATATTAGATAAGT
1 AAAAGGATATTAGATAAGT
310916 GGTGCATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.28
Consensus pattern (21 bp):
AAAAGGATATTAGATAAGTAT
Found at i:312553 original size:6 final size:6
Alignment explanation
Indices: 312542--312619 Score: 111
Period size: 6 Copynumber: 13.0 Consensus size: 6
312532 AAGCTTCATG
*
312542 TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA GGAAGA
1 TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA
* * * *
312590 GGAAGA GGAAGA GGAAGA TGAAGA GGAAGA
1 TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA
312620 AGAGAAAAGC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 69 1.00
ACGTcount: A:0.50, C:0.00, G:0.40, T:0.10
Consensus pattern (6 bp):
TGAAGA
Found at i:313163 original size:14 final size:14
Alignment explanation
Indices: 313144--313172 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
313134 AATTAGGTGC
313144 TTATTTAACTTAAT
1 TTATTTAACTTAAT
313158 TTATTTAACTTAAT
1 TTATTTAACTTAAT
313172 T
1 T
313173 AAGTTTAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTTAACTTAAT
Found at i:319595 original size:27 final size:26
Alignment explanation
Indices: 319565--319629 Score: 89
Period size: 24 Copynumber: 2.5 Consensus size: 26
319555 GATATTTGTG
*
319565 AATGAAGAGAGAGAAGAGGAAGCATAA
1 AATGAAGAGA-AGAAGAAGAAGCATAA
319592 AATG-A-AGAAGAAGAAGAAGCATAA
1 AATGAAGAGAAGAAGAAGAAGCATAA
319616 AATGAAGAAGAAGA
1 AATGAAG-AGAAGA
319630 GGAAATGAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
24 19 0.56
25 4 0.12
26 1 0.03
27 10 0.29
ACGTcount: A:0.60, C:0.03, G:0.29, T:0.08
Consensus pattern (26 bp):
AATGAAGAGAAGAAGAAGAAGCATAA
Found at i:319610 original size:24 final size:24
Alignment explanation
Indices: 319576--319629 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
319566 ATGAAGAGAG
*
319576 AGAAGAGGAAGCATAAAATGAAGA
1 AGAAGAAGAAGCATAAAATGAAGA
319600 AGAAGAAGAAGCATAAAATGAAGA
1 AGAAGAAGAAGCATAAAATGAAGA
319624 AGAAGA
1 AGAAGA
319630 GGAAATGAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.61, C:0.04, G:0.28, T:0.07
Consensus pattern (24 bp):
AGAAGAAGAAGCATAAAATGAAGA
Found at i:323608 original size:42 final size:42
Alignment explanation
Indices: 323538--323617 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
323528 ATTGCAAGAA
* *
323538 ATGGATCGATCCTTTAAGGGAAGGGATTGATCCTTTTCATAG
1 ATGGATCAATCCTTTAAGGGAAGAGATTGATCCTTTTCATAG
* *
323580 ATGGATCAATCCTTT-TGGTGAAGAGATTGATCTTTTTC
1 ATGGATCAATCCTTTAAGG-GAAGAGATTGATCCTTTTC
323618 CTCGAGGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 2 0.06
42 31 0.94
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.38
Consensus pattern (42 bp):
ATGGATCAATCCTTTAAGGGAAGAGATTGATCCTTTTCATAG
Found at i:323628 original size:42 final size:42
Alignment explanation
Indices: 323540--323628 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 42
323530 TGCAAGAAAT
* * *
323540 GGATCGATCCTTTAAGGGAAGGGATTGATCCTTTTCATAGAT
1 GGATCAATCCTTTAAGGGAAGAGATTGATCCTTTTCATAGAG
* * * *
323582 GGATCAATCCTTT-TGGTGAAGAGATTGATCTTTTTCCTCGAG
1 GGATCAATCCTTTAAGG-GAAGAGATTGATCCTTTTCATAGAG
323624 GGATC
1 GGATC
323629 GAACCCAAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.05
42 37 0.95
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.35
Consensus pattern (42 bp):
GGATCAATCCTTTAAGGGAAGAGATTGATCCTTTTCATAGAG
Found at i:325096 original size:20 final size:20
Alignment explanation
Indices: 325067--325117 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
325057 CTTGTTCTTC
325067 GTTT-TGGGCAAATTCGTGA
1 GTTTCTGGGCAAATTCGTGA
325086 GTTTCTGGGCAAATTCGTGA
1 GTTTCTGGGCAAATTCGTGA
325106 GTTTCTGGGCAA
1 GTTTCTGGGCAA
325118 TAGTATCGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 4 0.13
20 27 0.87
ACGTcount: A:0.20, C:0.14, G:0.31, T:0.35
Consensus pattern (20 bp):
GTTTCTGGGCAAATTCGTGA
Found at i:335889 original size:23 final size:23
Alignment explanation
Indices: 335838--335883 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
335828 CGATTCCCCT
335838 AAGGGGGAATCGGTTCCCATTCA
1 AAGGGGGAATCGGTTCCCATTCA
*
335861 AAGGGGGAATCGGTTCCCCTTCA
1 AAGGGGGAATCGGTTCCCATTCA
335884 TGGGGGTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (23 bp):
AAGGGGGAATCGGTTCCCATTCA
Found at i:343516 original size:42 final size:41
Alignment explanation
Indices: 343470--343553 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 41
343460 TATCAAGCTT
*
343470 AATTTTCAAA-TCAAAATTTCTTTTTAAAAATTTTCATTTTTC
1 AATTTTCAAACTCAAAA-TCCTTTTTAAAAA-TTTCATTTTTC
* * *
343512 AATTTTGAAAGCTCCAAATCCTTTTTCAAAATTTCATTTTTC
1 AATTTTCAAA-CTCAAAATCCTTTTTAAAAATTTCATTTTTC
343554 TTTCAAAATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 20 0.56
43 11 0.31
44 5 0.14
ACGTcount: A:0.33, C:0.15, G:0.02, T:0.49
Consensus pattern (41 bp):
AATTTTCAAACTCAAAATCCTTTTTAAAAATTTCATTTTTC
Found at i:345522 original size:25 final size:21
Alignment explanation
Indices: 345469--345527 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
345459 CCTTTAAAGA
345469 AAGGGATCAATCATTTTCCTC
1 AAGGGATCAATCATTTTCCTC
*
345490 AAGGGATCAATCATTTTCCTT
1 AAGGGATCAATCATTTTCCTC
* *
345511 AAGGGATCGATCTTTTT
1 AAGGGATCAATCATTTT
345528 TGTAAAACGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (21 bp):
AAGGGATCAATCATTTTCCTC
Found at i:349671 original size:37 final size:37
Alignment explanation
Indices: 349614--349708 Score: 156
Period size: 36 Copynumber: 2.6 Consensus size: 37
349604 TCCATATATT
*
349614 CTGACACCGAATCGTGTTATTTTTTTTTAATAAATCA
1 CTGATACCGAATCGTGTTATTTTTTTTTAATAAATCA
*
349651 CTGATATCGAATCGTGTTA-TTTTTTTTAATAAATCA
1 CTGATACCGAATCGTGTTATTTTTTTTTAATAAATCA
*
349687 CTTATACCGAATCGTGTTATTT
1 CTGATACCGAATCGTGTTATTT
349709 ACTACTACTA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 34 0.64
37 19 0.36
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (37 bp):
CTGATACCGAATCGTGTTATTTTTTTTTAATAAATCA
Found at i:351383 original size:9 final size:8
Alignment explanation
Indices: 351349--351410 Score: 52
Period size: 9 Copynumber: 7.1 Consensus size: 8
351339 TAAATAAATC
351349 AAAAATAAA
1 AAAAAT-AA
351358 AGAAAATAA
1 A-AAAATAA
*
351367 TAATAATAA
1 -AAAAATAA
351376 AAACAATAA
1 AAA-AATAA
*
351385 ACAAATAA
1 AAAAATAA
*
351393 AGAAATAA
1 AAAAATAA
351401 AGAAAATAA
1 A-AAAATAA
351410 A
1 A
351411 TTGAAAGTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
8 15 0.34
9 23 0.52
10 6 0.14
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (8 bp):
AAAAATAA
Found at i:351473 original size:10 final size:10
Alignment explanation
Indices: 351440--351482 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
351430 AACAAATATT
*
351440 AAATAAATCA
1 AAATAAATAA
*
351450 AAATAAAGAGA
1 AAATAAATA-A
*
351461 AAATATATAA
1 AAATAAATAA
351471 AAATAAATAA
1 AAATAAATAA
351481 AA
1 AA
351483 GGACAAATCA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.19
Consensus pattern (10 bp):
AAATAAATAA
Found at i:351522 original size:14 final size:14
Alignment explanation
Indices: 351503--351529 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
351493 AAATGGAAAA
351503 AAATAGAAAATAAC
1 AAATAGAAAATAAC
351517 AAATAGAAAATAA
1 AAATAGAAAATAA
351530 ATCAAAGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.04, G:0.07, T:0.15
Consensus pattern (14 bp):
AAATAGAAAATAAC
Found at i:351588 original size:19 final size:19
Alignment explanation
Indices: 351549--351587 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
351539 ATAAAGTAAG
351549 AATAAAAGATGCTTTAAAA
1 AATAAAAGATGCTTTAAAA
351568 AATAAAAGATG-TTTAAAA
1 AATAAAAGATGCTTTAAAA
351586 AA
1 AA
351588 AAAGAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.26
Consensus pattern (19 bp):
AATAAAAGATGCTTTAAAA
Found at i:352337 original size:15 final size:15
Alignment explanation
Indices: 352307--352339 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
352297 GTATTTGATG
352307 TGGTTTGTGATGGTT
1 TGGTTTGTGATGGTT
352322 TGGTGTTGTGAT-GTT
1 TGGT-TTGTGATGGTT
352337 TGG
1 TGG
352340 CTCGATCTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.06, C:0.00, G:0.42, T:0.52
Consensus pattern (15 bp):
TGGTTTGTGATGGTT
Found at i:352733 original size:26 final size:26
Alignment explanation
Indices: 352704--352758 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
352694 TTGTTTGACT
352704 TGTGCATTGGACTGGATTCTTAGACC
1 TGTGCATTGGACTGGATTCTTAGACC
352730 TGTGCATTGGACTGGATTCTTAGACC
1 TGTGCATTGGACTGGATTCTTAGACC
352756 TGT
1 TGT
352759 ACAAACACCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.36
Consensus pattern (26 bp):
TGTGCATTGGACTGGATTCTTAGACC
Found at i:352804 original size:19 final size:19
Alignment explanation
Indices: 352780--352842 Score: 108
Period size: 19 Copynumber: 3.2 Consensus size: 19
352770 AAAAAATGAT
352780 AAAATAAATAATAAAACAA
1 AAAATAAATAATAAAACAA
352799 AAAATAAATAATAAAACAA
1 AAAATAAATAATAAAACAA
352818 AAAATAAATAAATAAAAACAA
1 AAAATAAAT-AAT-AAAACAA
352839 AAAA
1 AAAA
352843 AGAATAAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 28 0.67
20 3 0.07
21 11 0.26
ACGTcount: A:0.81, C:0.05, G:0.00, T:0.14
Consensus pattern (19 bp):
AAAATAAATAATAAAACAA
Found at i:353023 original size:35 final size:35
Alignment explanation
Indices: 352866--353193 Score: 241
Period size: 36 Copynumber: 9.3 Consensus size: 35
352856 ATATGATATA
* *
352866 AAAAATG-TTTTAAAACTTTATATAATAT-ATATTTC
1 AAAAATGTTTTTAAAAC-ATATATTATATAAT-TTTC
* * * *
352901 AAAGATATTTTCAAAACCATATATTATATAATTTTA
1 AAAAATGTTTTTAAAA-CATATATTATATAATTTTC
* *
352937 AAAAATG-TTTTCAAAC-TATATGT-TATAGTTTTC
1 AAAAATGTTTTTAAAACATATAT-TATATAATTTTC
* *
352970 AAAAACG-TTTTAAAAC-TATATTATAT-GTTTTC
1 AAAAATGTTTTTAAAACATATATTATATAATTTTC
*
353002 AAAAATGTTTTTTTAAAACTATATATTATATAAATTTC
1 AAAAATG--TTTTTAAAAC-ATATATTATATAATTTTC
* *
353040 -AAAATGATTTTAAAACTATATATTATATAAATTATC
1 AAAAATGTTTTTAAAAC-ATATATTATAT-AATTTTC
*
353076 -AAAATGGTTTTAAAACTATATATTATAT-ATTTTC
1 AAAAATGTTTTTAAAAC-ATATATTATATAATTTTC
* * **
353110 TAAAAACGTTTTAAAAACTATATATTATATTGTTTTC
1 -AAAAATGTTTTTAAAAC-ATATATTATATAATTTTC
*
353147 AAAGGTAT-TTTTTAAAAACTATATATTATATACATTTTC
1 AAA--AATGTTTTT-AAAAC-ATATATTATATA-ATTTTC
353186 -AAAATGTT
1 AAAAATGTT
353194 ATTTTTTAAA
Statistics
Matches: 241, Mismatches: 32, Indels: 38
0.77 0.10 0.12
Matches are distributed among these distances:
32 13 0.05
33 35 0.15
34 7 0.03
35 41 0.17
36 86 0.36
37 30 0.12
38 24 0.10
39 5 0.02
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (35 bp):
AAAAATGTTTTTAAAACATATATTATATAATTTTC
Found at i:354275 original size:38 final size:37
Alignment explanation
Indices: 354216--354314 Score: 99
Period size: 37 Copynumber: 2.6 Consensus size: 37
354206 TTATATGCAA
* * * * *
354216 GCCATTTTGGATTATCTCAACCTTTGCATCTAATAGAC
1 GCCATTTTGAATTGTCACAACCTTT-CATATAATACAC
* *
354254 GCCATTTTGAATTGTCACAACCATTCCTATAATACAC
1 GCCATTTTGAATTGTCACAACCTTTCATATAATACAC
* * *
354291 ACCATTTTAAATGGTCACAACCTT
1 GCCATTTTGAATTGTCACAACCTT
354315 GTATGTATCC
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
37 29 0.58
38 21 0.42
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.34
Consensus pattern (37 bp):
GCCATTTTGAATTGTCACAACCTTTCATATAATACAC
Found at i:354787 original size:26 final size:25
Alignment explanation
Indices: 354734--354789 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
354724 TAACGTTGTT
*
354734 TTTTAATTTATAAAAAAAATTATCA
1 TTTTAATTTATAAAAAAAATTATAA
* * *
354759 TTTTAATTTATTAAACAATATTTTAA
1 TTTTAATTTA-TAAAAAAAATTATAA
354785 TTTTA
1 TTTTA
354790 TAAACCATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (25 bp):
TTTTAATTTATAAAAAAAATTATAA
Found at i:366640 original size:31 final size:31
Alignment explanation
Indices: 366567--366693 Score: 148
Period size: 31 Copynumber: 4.1 Consensus size: 31
366557 AGAGTCGAGG
**
366567 GTATACCTATGTTCTACGGAACATATGGACA
1 GTATACCTATGTTCTTTGGAACATATGGACA
* *
366598 GAATTACCTATG-TCTTTCGAGACATATGGACA
1 GTA-TACCTATGTTCTTTGGA-ACATATGGACA
**
366630 GTATACCTATGTTCTAAGGAACATATGGACA
1 GTATACCTATGTTCTTTGGAACATATGGACA
* * *
366661 GTTTACCTAGGTTCTTTGGAACCTATGGACA
1 GTATACCTATGTTCTTTGGAACATATGGACA
366692 GT
1 GT
366694 TGCCAAGGAT
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
31 54 0.68
32 26 0.32
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31
Consensus pattern (31 bp):
GTATACCTATGTTCTTTGGAACATATGGACA
Found at i:366645 original size:63 final size:62
Alignment explanation
Indices: 366567--366693 Score: 184
Period size: 63 Copynumber: 2.0 Consensus size: 62
366557 AGAGTCGAGG
* *
366567 GTATACCTATGTTCTACGGAACATATGGACAGAATTACCTATG-TCTTTCGAGACATATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACAG-ATTACCTAGGTTCTTTCGA-ACATATGGACA
* * *
366630 GTATACCTATGTTCTAAGGAACATATGGACAGTTTACCTAGGTTCTTTGGAACCTATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACAGATTACCTAGGTTCTTTCGAACATATGGACA
366692 GT
1 GT
366694 TGCCAAGGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
62 20 0.34
63 38 0.66
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31
Consensus pattern (62 bp):
GTATACCTATGTTCTAAGGAACATATGGACAGATTACCTAGGTTCTTTCGAACATATGGACA
Found at i:371546 original size:31 final size:31
Alignment explanation
Indices: 371422--371546 Score: 137
Period size: 31 Copynumber: 4.0 Consensus size: 31
371412 GTCAAGGGTA
* *
371422 TACCTATGTTCTACAGAACATATGGACAGAAT
1 TACCTATGTTCTACGGAACATATGGACAG-TT
* *
371454 TACCTATG-TCTTTC-GAGACATATGGACAGTA
1 TACCTATGTTC-TACGGA-ACATATGGACAGTT
*
371485 TACCTATGTTCTAAGGAACATATGGACAGTT
1 TACCTATGTTCTACGGAACATATGGACAGTT
* * *
371516 TACCTAGGTTCTTCGGAACCTATGGACAGTT
1 TACCTATGTTCTACGGAACATATGGACAGTT
371547 GCCAAGGATC
Statistics
Matches: 79, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
31 53 0.67
32 26 0.33
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (31 bp):
TACCTATGTTCTACGGAACATATGGACAGTT
Found at i:372770 original size:18 final size:18
Alignment explanation
Indices: 372738--372773 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
372728 AATTGTTTCT
**
372738 AACTAATTAGTAACAGAA
1 AACTAATTACAAACAGAA
372756 AACTAATTACAAACAGAA
1 AACTAATTACAAACAGAA
372774 CATAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.58, C:0.14, G:0.08, T:0.19
Consensus pattern (18 bp):
AACTAATTACAAACAGAA
Found at i:379647 original size:16 final size:16
Alignment explanation
Indices: 379626--379665 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
379616 TTTGTCATTT
379626 TTACTAAAACTTTTAG
1 TTACTAAAACTTTTAG
379642 TTACTAAAACTTTTAG
1 TTACTAAAACTTTTAG
379658 TTAC-AAAA
1 TTACTAAAA
379666 GTTGTCACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.40
Consensus pattern (16 bp):
TTACTAAAACTTTTAG
Found at i:380647 original size:35 final size:35
Alignment explanation
Indices: 380591--380714 Score: 160
Period size: 35 Copynumber: 3.5 Consensus size: 35
380581 CTCAAAAAAA
**
380591 TCGATT-AAAGTAGAATAGAAGGAAGCATCGCACTT
1 TCGATTCAAA-TAGAACGGAAGGAAGCATCGCACTT
* *
380626 TCGATTCAAGTCGAACGGAAGGAAGCATCGCACTT
1 TCGATTCAAATAGAACGGAAGGAAGCATCGCACTT
* * *
380661 TTGATTTAAATAGAACGGAAGGAAGCATCGCATTT
1 TCGATTCAAATAGAACGGAAGGAAGCATCGCACTT
*
380696 TCGATTCAACTAGAACGGA
1 TCGATTCAAATAGAACGGA
380715 TGGTTTACTA
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
35 74 0.97
36 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (35 bp):
TCGATTCAAATAGAACGGAAGGAAGCATCGCACTT
Found at i:381404 original size:39 final size:39
Alignment explanation
Indices: 381350--381467 Score: 133
Period size: 39 Copynumber: 3.1 Consensus size: 39
381340 ATTTTCAAAT
381350 TATTTCAC-TCTAACATTCTAAATTCCTAATTTCTTAAAA
1 TATTTCACAT-TAACATTCTAAATTCCTAATTTCTTAAAA
** *
381389 T-TTTCTATCA-TAACATTCTAAATTTTTAATTTCTTAAAT
1 TATTTC-A-CATTAACATTCTAAATTCCTAATTTCTTAAAA
381428 TATTTCACATTAACATTCTAAA-T--TAATTT-TTAAAA
1 TATTTCACATTAACATTCTAAATTCCTAATTTCTTAAAA
381463 TATTT
1 TATTT
381468 TTACTTTCAA
Statistics
Matches: 70, Mismatches: 4, Indels: 14
0.80 0.05 0.16
Matches are distributed among these distances:
35 10 0.14
36 6 0.09
38 7 0.10
39 42 0.60
40 5 0.07
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.49
Consensus pattern (39 bp):
TATTTCACATTAACATTCTAAATTCCTAATTTCTTAAAA
Found at i:381684 original size:23 final size:23
Alignment explanation
Indices: 381654--381705 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
381644 ATGAACCAAA
*
381654 TACCCGTGATCCGAAAATACAGG
1 TACCCGTGATCCGAAAATACAAG
381677 TACCCGTGATCCGAAAATACAAG
1 TACCCGTGATCCGAAAATACAAG
381700 TACCCG
1 TACCCG
381706 GGATGTCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.35, C:0.29, G:0.19, T:0.17
Consensus pattern (23 bp):
TACCCGTGATCCGAAAATACAAG
Found at i:382981 original size:2 final size:2
Alignment explanation
Indices: 382974--382999 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
382964 TGGTAATTTA
382974 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
383000 TAAAAGAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:384456 original size:33 final size:33
Alignment explanation
Indices: 384408--384507 Score: 141
Period size: 33 Copynumber: 3.1 Consensus size: 33
384398 GTTTGGAAAG
*
384408 ATTGGAAATTTAATCTTGGTTGGTGGCCAACTT
1 ATTGGAAAATTAATCTTGGTTGGTGGCCAACTT
* *
384441 ATTGAAAAATTAATCTTGGTTGGTGGCCAACTC
1 ATTGGAAAATTAATCTTGGTTGGTGGCCAACTT
* *
384474 ATTGGAAAATT-CT-TTGGTAGGTGGCCAACTT
1 ATTGGAAAATTAATCTTGGTTGGTGGCCAACTT
384505 ATT
1 ATT
384508 TTTCTTGTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
31 19 0.32
32 1 0.02
33 40 0.67
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (33 bp):
ATTGGAAAATTAATCTTGGTTGGTGGCCAACTT
Found at i:396568 original size:33 final size:33
Alignment explanation
Indices: 396520--396619 Score: 123
Period size: 33 Copynumber: 3.1 Consensus size: 33
396510 GTTTGGCAAG
*
396520 ATTGGAAATTTAATCTTGGTTGGTGGCCAACTT
1 ATTGGAAAATTAATCTTGGTTGGTGGCCAACTT
* * *
396553 ATTGAAAAATTAATCTTGGTTAGTGGCCAACTC
1 ATTGGAAAATTAATCTTGGTTGGTGGCCAACTT
* * *
396586 ATTGGAAAATT-CT-TTGGTAGGTGGCTAACTT
1 ATTGGAAAATTAATCTTGGTTGGTGGCCAACTT
396617 ATT
1 ATT
396620 TTTCATGTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
31 17 0.30
32 1 0.02
33 39 0.68
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (33 bp):
ATTGGAAAATTAATCTTGGTTGGTGGCCAACTT
Found at i:406275 original size:45 final size:43
Alignment explanation
Indices: 406200--406559 Score: 406
Period size: 43 Copynumber: 8.2 Consensus size: 43
406190 AAGGAAATTA
*
406200 GCGGCGTTTGTAT-AAAAAAACGCCGCTATAGATCTGACCTTTT
1 GCGGCGTTTGT-TCCAAAAAACGCCGCTATAGATCTGACCTTTT
*
406243 GCGGCGTTTGTTCCAAAAAAAACGTCGCTATAGATCTGACCTTTT
1 GCGGCGTTTGTTCC--AAAAAACGCCGCTATAGATCTGACCTTTT
* *
406288 GCGGCGTTTGTTCCAAAAAAAAAACGCCGCTATATATTTGACCTTTT
1 GCGGCGTTTGTTCC----AAAAAACGCCGCTATAGATCTGACCTTTT
* * *
406335 GCAGCGTTTGTAT-CAAAAAATGCCACTATAGATCTGACCTTTT
1 GCGGCGTTTGT-TCCAAAAAACGCCGCTATAGATCTGACCTTTT
** * *
406378 GCGATGTTTGTTCCAAAAAAACGCCGCTATATATCTGACCTATT
1 GCGGCGTTTGTTCC-AAAAAACGCCGCTATAGATCTGACCTTTT
* * *
406422 GCGGCGTTTGTTTC-AAAAACGCCGCTATAGATATCAGCCTTTT
1 GCGGCGTTTGTTCCAAAAAACGCCGCTATAGATCTGA-CCTTTT
* *
406465 ACGGCGTTTGTTCC-AAAAACGCCACTATAGATCTTGACCTTTT
1 GCGGCGTTTGTTCCAAAAAACGCCGCTATAGATC-TGACCTTTT
* * *
406508 GCGGCGTTTGTTCC-AAAAATGCCGCTATAGATCTTATCCTATT
1 GCGGCGTTTGTTCCAAAAAACGCCGCTATAGATCTGA-CCTTTT
406551 GCGGCGTTT
1 GCGGCGTTT
406560 TTGGTTCTCA
Statistics
Matches: 272, Mismatches: 34, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
42 23 0.08
43 129 0.47
44 38 0.14
45 42 0.15
47 39 0.14
48 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (43 bp):
GCGGCGTTTGTTCCAAAAAACGCCGCTATAGATCTGACCTTTT
Found at i:420128 original size:26 final size:26
Alignment explanation
Indices: 420070--420130 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
420060 AATAAATACT
420070 AAAATAAATAAAAGAGGAAAAAGGAAA
1 AAAATAAATAAAAGA-GAAAAAGGAAA
**
420097 TTAATAAATCAAAAGA-AAAAAGGAAA
1 AAAATAAAT-AAAAGAGAAAAAGGAAA
420123 AAAATAAA
1 AAAATAAA
420131 AATTAAATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 16 0.55
27 7 0.24
28 6 0.21
ACGTcount: A:0.74, C:0.02, G:0.13, T:0.11
Consensus pattern (26 bp):
AAAATAAATAAAAGAGAAAAAGGAAA
Found at i:421604 original size:7 final size:7
Alignment explanation
Indices: 421580--421628 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
421570 AGAAAAACAA
421580 AAATAAT
1 AAATAAT
*
421587 AAGTAAT
1 AAATAAT
*
421594 AAATAAC
1 AAATAAT
421601 AAATAA-
1 AAATAAT
421607 ATAATAAAT
1 A-AAT-AAT
421616 AAATAAT
1 AAATAAT
421623 AAATAA
1 AAATAA
421629 AATAGAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
6 1 0.03
7 29 0.81
8 5 0.14
9 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (7 bp):
AAATAAT
Found at i:421605 original size:11 final size:11
Alignment explanation
Indices: 421591--421629 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
421581 AATAATAAGT
*
421591 AATAAATAACA
1 AATAAATAATA
421602 AATAAATAATA
1 AATAAATAATA
421613 AATAAATAATA
1 AATAAATAATA
421624 AATAAA
1 AATAAA
421630 ATAGAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (11 bp):
AATAAATAATA
Found at i:421611 original size:18 final size:18
Alignment explanation
Indices: 421580--421628 Score: 73
Period size: 18 Copynumber: 2.7 Consensus size: 18
421570 AGAAAAACAA
*
421580 AAATAATAAGTAATAAAT
1 AAATAATAAATAATAAAT
421598 AACA-AATAAATAATAAAT
1 AA-ATAATAAATAATAAAT
421616 AAATAATAAATAA
1 AAATAATAAATAA
421629 AATAGAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 1 0.04
18 26 0.93
19 1 0.04
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (18 bp):
AAATAATAAATAATAAAT
Found at i:421641 original size:22 final size:20
Alignment explanation
Indices: 421591--421652 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
421581 AATAATAAGT
*
421591 AATAAATAACAAATAAATAATA
1 AATAAATAATAAAT-AA-AATA
421613 AATAAATAATAAATAAAATA
1 AATAAATAATAAATAAAATA
421633 GAATAAA-ATATAAA-AAAATA
1 -AATAAATA-ATAAATAAAATA
421653 TAAAAAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
20 11 0.30
21 13 0.35
22 13 0.35
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (20 bp):
AATAAATAATAAATAAAATA
Found at i:421645 original size:17 final size:16
Alignment explanation
Indices: 421580--421663 Score: 59
Period size: 18 Copynumber: 5.1 Consensus size: 16
421570 AGAAAAACAA
*
421580 AAATAATAAGTAATAAAT
1 AAATAATAAAT-A-AAAT
421598 AACA-AATAAATAATAAAT
1 AA-ATAATAAAT-A-AAAT
421616 AAATAATAAATAAAAT
1 AAATAATAAATAAAAT
421632 AGAATAA-AATATAAAA-
1 A-AATAATAA-ATAAAAT
*
421648 AAAT-ATAAAAAAAAT
1 AAATAATAAATAAAAT
421663 A
1 A
421664 TTTTTTAAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
14 6 0.10
15 6 0.10
16 8 0.14
17 13 0.22
18 24 0.41
19 1 0.02
ACGTcount: A:0.74, C:0.01, G:0.02, T:0.23
Consensus pattern (16 bp):
AAATAATAAATAAAAT
Found at i:421664 original size:11 final size:10
Alignment explanation
Indices: 421605--421660 Score: 58
Period size: 10 Copynumber: 5.3 Consensus size: 10
421595 AATAACAAAT
*
421605 AAATAATAAAT
1 AAAT-ATAAAA
421616 AAATAATAAATA
1 AAAT-ATAAA-A
* *
421628 AAATAGAATA
1 AAATATAAAA
421638 AAATATAAAA
1 AAATATAAAA
421648 AAATATAAAA
1 AAATATAAAA
421658 AAA
1 AAA
421661 ATATTTTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
10 22 0.56
11 13 0.33
12 4 0.10
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (10 bp):
AAATATAAAA
Found at i:421849 original size:79 final size:72
Alignment explanation
Indices: 421698--421919 Score: 243
Period size: 79 Copynumber: 2.9 Consensus size: 72
421688 TGATTTTTAA
* *
421698 AAAATGTTTTTCAAAACCATATAATGTAATATATTTTCAAAAAATATTTT--AAAACTAT-ATAA
1 AAAATG-TTTTAAAAACCATAT-A--T-ATATATTTTC--AAAATGTTTTAAAAAACTATAAT-A
* *
421760 CATATATATGTTTTT
58 TATATATATGTTTTC
*
421775 AAAATGTTTTAAAAACCATATATTATATATTTATTTTCAAATTGTTTTTAAAAAAACTATAATAT
1 AAAATGTTTTAAAAACC--ATA-TATATA--TATTTTCAAAATG-TTTT-AAAAAACTATAATAT
421840 ATATATATGTTTTC
59 ATATATATGTTTTC
421854 AAAATGTTTTAAAAACCATATATATATATTTTCAAAATGTTTTAAAAAACTATAATATATATATA
1 AAAATGTTTTAAAAACCATATATATATATTTTCAAAATGTTTTAAAAAACTATAATATATATATA
421919 T
66 T
421920 ATATATATAT
Statistics
Matches: 129, Mismatches: 6, Indels: 25
0.81 0.04 0.16
Matches are distributed among these distances:
72 23 0.18
73 4 0.03
74 12 0.09
75 7 0.05
76 21 0.16
77 16 0.12
78 4 0.03
79 40 0.31
80 2 0.02
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.44
Consensus pattern (72 bp):
AAAATGTTTTAAAAACCATATATATATATTTTCAAAATGTTTTAAAAAACTATAATATATATATA
TGTTTTC
Found at i:421880 original size:33 final size:33
Alignment explanation
Indices: 421838--422024 Score: 141
Period size: 33 Copynumber: 5.6 Consensus size: 33
421828 AAACTATAAT
*
421838 ATATATATATGTTTTCAAAATGTTTTAAAAACC
1 ATATATATATATTTTCAAAATGTTTTAAAAACC
*
421871 ATATATATATATTTTCAAAATGTTTTAAAAAAC
1 ATATATATATATTTTCAAAATGTTTTAAAAACC
* * * * * * *
421904 -TATAATATATATATAT-ATATAT-ATATATATA-T
1 ATAT-ATATATAT-TTTCA-AAATGTTTTAAAAACC
* * *
421936 ATATATATATGTTTTCAACATGTTTTAAAAATC
1 ATATATATATATTTTCAAAATGTTTTAAAAACC
* * *
421969 ATATATTATATATTTTCAAAATGATTT-CAAACT
1 ATATA-TATATATTTTCAAAATGTTTTAAAAACC
422002 ATATAATATATACATTTTCAAAA
1 ATAT-ATATAT--ATTTTCAAAA
422025 AATCATTTTT
Statistics
Matches: 120, Mismatches: 23, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
31 5 0.04
32 16 0.13
33 65 0.54
34 24 0.20
35 10 0.08
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.44
Consensus pattern (33 bp):
ATATATATATATTTTCAAAATGTTTTAAAAACC
Found at i:421913 original size:2 final size:2
Alignment explanation
Indices: 421904--421945 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
421894 TTTAAAAAAC
421904 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
421945 T
1 T
421946 GTTTTCAACA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:421920 original size:39 final size:37
Alignment explanation
Indices: 421698--422093 Score: 226
Period size: 38 Copynumber: 10.9 Consensus size: 37
421688 TGATTTTTAA
* * *
421698 AAAATGTTTTTCAAAACCATATA-ATGTAATATATTTTC
1 AAAATG-TTTTAAAAACTATATATATAT-ATATATTTTC
* * * *
421736 AAAAAATATTTT-AAAACTATATAACATATATATGTTTTT
1 --AAAATGTTTTAAAAACTATAT-ATATATATATATTTTC
* *
421775 AAAATGTTTTAAAAACCATATATTATATATTTATTTTC
1 AAAATGTTTTAAAAACTATATA-TATATATATATTTTC
* *
421813 AAATTGTTTTTAAAAAAACTATAATATATATATATGTTTTC
1 AAAATG-TTTT--AAAAACTAT-ATATATATATATATTTTC
*
421854 AAAATGTTTTAAAAAC----CATATATATATATTTTC
1 AAAATGTTTTAAAAACTATATATATATATATATTTTC
421887 AAAATGTTTTAAAAAACTATA-ATATATATATA---T-
1 AAAATGTTTT-AAAAACTATATATATATATATATTTTC
* * * * *
421920 ---AT-ATATATATA-TATATATATATATATGTTTTC
1 AAAATGTTTTAAAAACTATATATATATATATATTTTC
* *
421952 AACATGTTTTAAAAA-T-CATATAT-TATATATTTTC
1 AAAATGTTTTAAAAACTATATATATATATATATTTTC
* * *
421986 AAAATGATTT-CAAACTATATA-ATATATACATTTTC
1 AAAATGTTTTAAAAACTATATATATATATATATTTTC
* *
422021 AAAAAATCATTTTTCAAAACTATATATAT-TATATA-TTTC
1 --AAAAT--GTTTTAAAAACTATATATATATATATATTTTC
* ** **
422060 CAAATCATTTGCAAACTATAATATATATATATAT
1 AAAATGTTTTAAAAACTAT-ATATATATATATAT
422094 ATATAAATAA
Statistics
Matches: 279, Mismatches: 43, Indels: 70
0.71 0.11 0.18
Matches are distributed among these distances:
27 4 0.01
28 13 0.05
29 2 0.01
30 2 0.01
31 1 0.00
33 28 0.10
34 28 0.10
35 31 0.11
36 12 0.04
37 36 0.13
38 40 0.14
39 24 0.09
40 27 0.10
41 28 0.10
42 3 0.01
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (37 bp):
AAAATGTTTTAAAAACTATATATATATATATATTTTC
Found at i:422076 original size:35 final size:36
Alignment explanation
Indices: 421931--422093 Score: 140
Period size: 35 Copynumber: 4.5 Consensus size: 36
421921 TATATATATA
* * * *
421931 TATATATATATATATGTTTTCAACAT-GTTTTAAA-
1 TATATATATATATATATTTTCAAAATCATTTCAAAC
* *
421965 AATCATATAT-TATATATTTTCAAAATGATTTCAAAC
1 TAT-ATATATATATATATTTTCAAAATCATTTCAAAC
*
422001 TATATA-ATATATACATTTTCAAAAAATCATTTTTCAAAAC
1 TATATATATATATATATTTTC--AAAATCA--TTTC-AAAC
*
422041 TATATATAT-TATATA-TTTCCAAATCATTTGCAAAC
1 TATATATATATATATATTTTCAAAATCATTT-CAAAC
422076 TATAATATATATATATAT
1 TAT-ATATATATATATAT
422094 ATATAAATAA
Statistics
Matches: 105, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
34 18 0.17
35 35 0.33
36 9 0.09
37 18 0.17
39 8 0.08
40 15 0.14
41 2 0.02
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (36 bp):
TATATATATATATATATTTTCAAAATCATTTCAAAC
Found at i:423081 original size:84 final size:84
Alignment explanation
Indices: 422718--424162 Score: 1673
Period size: 84 Copynumber: 17.3 Consensus size: 84
422708 AAGATCTTTA
* * * **
422718 GCAGATAACCCTTCTGGCCTTGAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGCGTAGTTAA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
*
422783 ACTCTAAGGTC---T-TTG
66 ACTCGAAGGTCTTTTGTTG
* *** * * * * *
422798 GAAGATAGTTCTTCTTGCCTTGAGCTATGTTACAAATGATAGTGCCTTTGAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGAT-GTGCCTTTGAGCTGAGCGTAGTCG
*
422863 AACTCAAAGGTC---T-TTG
65 AACTCGAAGGTCTTTTGTTG
* * * * * * * * *
422879 GCAAATAGCCCTTCTTGCCTTGAGCTATGCTGCAAATGATGGTGCCTTTGAGCTGAGTGGAATTG
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGAT-GTGCCTTTGAGCTGAGCGTAGTCG
*
422944 AACTTGAAGGTC---T-TTG
65 AACTCGAAGGTCTTTTGTTG
* * * * * * * *
422960 GCAAATAACCCTTCTTGCCTTGAGCTATGCTGCAAATGATGATGCCTTTAAGCTAAGTGTAATCG
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATG-TGCCTTTGAGCTGAGCGTAGTCG
423025 AACTCGAAGGTC-TTTGTTG
65 AACTCGAAGGTCTTTTGTTG
* * * * * * *
423044 ACAGATAACCCTTCTAGCATTGAGTTATATTGTAAATGATGTGCCTTTGAGGTGAGTGTAATCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
423109 ACTCGAAGGTC-TTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * * *
423127 ACATATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
423192 ACTCGAAGGTCTTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * * *
423211 GCAGATAACCCTTCTAGCCTTGAGTTATGTAGCAAATGATGTGCATTAGAGCTGAGCATAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
423276 ACTCGAAGGT-TTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * * * * * * *
423294 GCAAATAGCCCTTCTTGCCTTGAGTTATGCTGCAATTGATGTGCCTTGGAGTTAAGCGTAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
*
423359 ACTCGAAGATCTTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* ** * * * * *
423378 GCAGATAACCCTTCTCGCCTTGAGTTATACTGCAAACGTTGTGCCTTTGAGCTGAGTGTAATCAA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
423443 ACTCGAAGGTCTTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * * *
423462 GCAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCTTGGAGATGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
423527 ACTCGAAGGTCTTTT-TTG
66 ACTCGAAGGTCTTTTGTTG
** * * *
423545 ATAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCAA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
*
423610 ACTCAAAGGTCTTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * * * *
423629 GCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATTATGTTCCTTGGAGTTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
423694 ACTCGAAGGTCTTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * * * * *
423713 GCAAATAGCCCTTCTTGCCTTGAGTTATGTTGTAAATGATGTGCCTTGGAGTTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
423778 ACTCGAAGGTCTTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * * * * * ** *
423797 GCAGATAGCCCTTCTCGCCTTGAGATATGCTGCAAATGGTGTGCCTTTAAGCTGAATGTAATCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
* * *
423862 ACTCTAAGATATTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * *
423881 GCAGATAACCCTTCTAGCCTTGAGTTATGTTACAAATGATATGCCTTGGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
423946 ACTCGAAGGTCTTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * * * * *
423965 GTAAATAGCCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
424030 ACTCGAAGGTCTTTTGGTTG
66 ACTCGAAGGTCTTTT-GTTG
* * * * * * * **
424050 GCAGATAGCCCTTCTCGACTTAAGCTATATTGCAAATGATCTGCCTTTGAGCTGAGTATCA-TCG
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGT-AGTCG
424114 AACTCGAAGGTCTTTTGTTG
65 AACTCGAAGGTCTTTTGTTG
424134 GCAGATAACCCTTCTAGCCTTGAGTTATG
1 GCAGATAACCCTTCTAGCCTTGAGTTATG
424163 CTGCCAACAG
Statistics
Matches: 1186, Mismatches: 169, Indels: 16
0.87 0.12 0.01
Matches are distributed among these distances:
80 33 0.03
81 173 0.15
83 255 0.22
84 652 0.55
85 72 0.06
86 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (84 bp):
GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
ACTCGAAGGTCTTTTGTTG
Found at i:423210 original size:167 final size:168
Alignment explanation
Indices: 422718--424166 Score: 1717
Period size: 167 Copynumber: 8.7 Consensus size: 168
422708 AAGATCTTTA
* * * **
422718 GCAGATAACCCTTCTGGCCTTGAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGCGTAGTTAA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
* * *** * * * *
422783 ACTCTAAGGTC---T-TTGGAAGATAGTTCTTCTTGCCTTGAGCTATGTTACAAATGATAGTGCC
66 ACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGAT-GTGCC
* * * *
422844 TTTGAGCTGAGTGTAATCGAACTCAAAGGTC---T-TTG
130 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
* * * * * * * * *
422879 GCAAATAGCCCTTCTTGCCTTGAGCTATGCTGCAAATGATGGTGCCTTTGAGCTGAGTGGAATTG
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGAT-GTGCCTTTGAGCTGAGCGTAGTCG
* * * *
422944 AACTTGAAGGTC---T-TTGGCAAATAACCCTTCTTGCCTTGAGCTATGCTGCAAATGATGATGC
65 AACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATG-TGC
** * * *
423005 CTTTAAGCTAAGTGTAATCGAACTCGAAGGTC-TTTGTTG
129 CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
* * * * * * *
423044 ACAGATAACCCTTCTAGCATTGAGTTATATTGTAAATGATGTGCCTTTGAGGTGAGTGTAATCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
* * * *
423109 ACTCGAAGGTC-TTTGTTGACATATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCT
66 ACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCT
423173 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
131 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
* * * *
423211 GCAGATAACCCTTCTAGCCTTGAGTTATGTAGCAAATGATGTGCATTAGAGCTGAGCATAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
* * * *
423276 ACTCGAAGGT-TTTTGTTGGCAAATAGCCCTTCTTGCCTTGAGTTATGCTGCAATTGATGTGCCT
66 ACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCT
* * *
423340 TGGAGTTAAGCGTAGTCGAACTCGAAGATCTTTTGTTG
131 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
* ** * * * * *
423378 GCAGATAACCCTTCTCGCCTTGAGTTATACTGCAAACGTTGTGCCTTTGAGCTGAGTGTAATCAA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
*
423443 ACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCT
66 ACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCT
*
423508 TGGAGATGAGCGTAGTCGAACTCGAAGGTCTTTT-TTG
131 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
** * * *
423545 ATAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCAA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
* * *
423610 ACTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATTATGTTCCT
66 ACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCT
*
423675 TGGAGTTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
131 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
* * * * * *
423713 GCAAATAGCCCTTCTTGCCTTGAGTTATGTTGTAAATGATGTGCCTTGGAGTTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
* * * *
423778 ACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGATATGCTGCAAATGGTGTGCCT
66 ACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCT
** ** * * * *
423843 TTAAGCTGAATGTAATCGAACTCTAAGATATTTTGTTG
131 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
* * *
423881 GCAGATAACCCTTCTAGCCTTGAGTTATGTTACAAATGATATGCCTTGGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
* * * * * *
423946 ACTCGAAGGTCTTTTGTTGGTAAATAGCCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCT
66 ACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCT
424011 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTTG
131 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTT-GTTG
* * * * * * * **
424050 GCAGATAGCCCTTCTCGACTTAAGCTATATTGCAAATGATCTGCCTTTGAGCTGAGTATCA-TCG
1 GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGT-AGTCG
424114 AACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGC
65 AACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGC
424167 CAACAGTTTC
Statistics
Matches: 1111, Mismatches: 163, Indels: 20
0.86 0.13 0.02
Matches are distributed among these distances:
161 37 0.03
162 98 0.09
164 33 0.03
165 34 0.03
166 31 0.03
167 404 0.36
168 371 0.33
169 102 0.09
170 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (168 bp):
GCAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
ACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCT
TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTG
Found at i:423423 original size:251 final size:252
Alignment explanation
Indices: 422722--424166 Score: 1756
Period size: 251 Copynumber: 5.8 Consensus size: 252
422712 TCTTTAGCAG
* * **
422722 ATAACCCTTCTGGCCTTGAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGCGTAGTTAAACTC
1 ATAACCCTTCTTGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
* * ** * * *
422787 TAAGGTC---T-TTGGAAGATAGTTCTTCTTGCCTTGAGCTATGTTACAAATGATAGTGCCTTTG
66 GAAGGTCTTTTGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGTTGCAAATGAT-GTGCCTTTG
* * * * *
422848 AGCTGAGTGTAATCGAACTCAAAGGTC---T-TTGGCAAATAGCCCTTCTTGCCTTGAGCTATGC
130 AGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGC
* * * * * * *
422909 TGCAAATGATGGTGCCTTTGAGCTGAGTGGAATTGAACTTGAAGGTC---T-TTGGCAA
195 TGCAAATG-TTGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAA
* ** * * *
422964 ATAACCCTTCTTGCCTTGAGCTATGCTGCAAATGATGATGCCTTTAAGCTAAGTGTAATCGAACT
1 ATAACCCTTCTTGCCTTGAGTTATGCTGCAAATGATG-TGCCTTGGAGCTGAGCGTAGTCGAACT
* * * * *
423029 CGAAGGTC-TTTGTTGACAGATAACCCTTCTAGCATTGAGTTATATTGTAAATGATGTGCCTTTG
65 CGAAGGTCTTTTGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTG
* * * *
423093 AGGTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGACATATAACCCTTCTAGCCTTGAGTTATGT
130 AGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGC
* * *
423157 TGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAG
195 TGCAAATGTTGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAA
* * * *
423215 ATAACCCTTCTAGCCTTGAGTTATG-TAGCAAATGATGTGCATTAGAGCTGAGCATAGTCGAACT
1 ATAACCCTTCTTGCCTTGAGTTATGCT-GCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACT
* * * * *
423279 CGAAGGT-TTTTGTTGGCAAATAGCCCTTCTTGCCTTGAGTTATGCTGCAATTGATGTGCCTTGG
65 CGAAGGTCTTTTGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTG
* * * * * * *
423343 AGTTAAGCGTAGTCGAACTCGAAGATCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGTTATAC
130 AGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGC
* * * * * *
423408 TGCAAACGTTGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAG
195 TGCAAATGTTGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAA
* * *
423466 ATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCTTGGAGATGAGCGTAGTCGAACTC
1 ATAACCCTTCTTGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
** * * *
423531 GAAGGTCTTTT-TTGATAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCTTGGA
66 GAAGGTCTTTTGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGA
* * * *
423595 GCTGAGCGTAGTCAAACTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCT
131 GCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCT
* *
423660 GCAAAT-TATGTTCCTTGGAGTTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAA
196 GCAAATGT-TGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAA
* * * *
423717 ATAGCCCTTCTTGCCTTGAGTTATGTTGTAAATGATGTGCCTTGGAGTTGAGCGTAGTCGAACTC
1 ATAACCCTTCTTGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
* * * * *
423782 GAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGATATGCTGCAAATGGTGTGCCTTTAA
66 GAAGGTCTTTTGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGA
* * * * *
423847 GCTGAATGTAATCGAACTCTAAGATATTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGTT
131 GCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCT
* * * *
423912 ACAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGTAA
196 GCAAATGTTGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAA
* * *
423969 ATAGCCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTTGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
* * * * * *
424034 GAAGGTCTTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGCTATATTGCAAATGATCTGCCTTTG
66 GAAGGTCTTTT-GTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTG
* *
424099 AGCTGAGTATCATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGC
130 AGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGC
424164 TGC
195 TGC
424167 CAACAGTTTC
Statistics
Matches: 1031, Mismatches: 152, Indels: 29
0.85 0.13 0.02
Matches are distributed among these distances:
242 35 0.03
243 27 0.03
245 35 0.03
246 32 0.03
247 31 0.03
248 34 0.03
250 98 0.10
251 406 0.39
252 228 0.22
253 105 0.10
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (252 bp):
ATAACCCTTCTTGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
GAAGGTCTTTTGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTTGA
GCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCT
GCAAATGTTGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAA
Found at i:427041 original size:3 final size:3
Alignment explanation
Indices: 427035--427068 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
427025 ACATTATTAT
427035 TAA TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
427069 TCCCGGACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:428038 original size:95 final size:96
Alignment explanation
Indices: 427836--428096 Score: 332
Period size: 95 Copynumber: 2.7 Consensus size: 96
427826 AGCTAGCTGA
* * *
427836 ATCCATAAAGCC-GGGGAGTTTAACCAATTACTCTAGAGGGACAGCTCAA--TATCATTGTATAT
1 ATCCATAAAGCCAGGGCA-TTTAACCAATTACTATAGAGGGACAGCTCAAGCT-TTATTGTATAT
* *
427898 ATATTACAATCACCTTTATCATGCTAGCTGAATATT
64 ATA-T--AATCAACTTTATCAAGCTAGCTGAATATT
*
427934 ATCCATAAAGCCAGGGCATTTAACCAATTACTATAGAGGGACAACTCAAGCTTTATTGTATAT-T
1 ATCCATAAAGCCAGGGCATTTAACCAATTACTATAGAGGGACAGCTCAAGCTTTATTGTATATAT
* *
427998 ATAATCAACTTTATCAAGTTAGCTGAATCTT
66 ATAATCAACTTTATCAAGCTAGCTGAATATT
* * * * *
428029 ATCCATAAAGCCAGGGCGTTTAACCAATTGCTTTATAAGGACAGCTCAAGCTTTATTGTATATAT
1 ATCCATAAAGCCAGGGCATTTAACCAATTACTATAGAGGGACAGCTCAAGCTTTATTGTATATAT
428094 ATA
66 ATA
428097 TATATATAAT
Statistics
Matches: 145, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
95 82 0.57
96 4 0.03
97 1 0.01
98 43 0.30
99 14 0.10
100 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32
Consensus pattern (96 bp):
ATCCATAAAGCCAGGGCATTTAACCAATTACTATAGAGGGACAGCTCAAGCTTTATTGTATATAT
ATAATCAACTTTATCAAGCTAGCTGAATATT
Found at i:431491 original size:10 final size:10
Alignment explanation
Indices: 431478--431527 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
431468 ATCTACAAAA
431478 ATATTTTATT
1 ATATTTTATT
*
431488 ATATTATATT
1 ATATTTTATT
*
431498 ATATTATATT
1 ATATTTTATT
*
431508 ATATTATTTTT
1 ATATT-TTATT
431519 AT-TTTTATT
1 ATATTTTATT
431528 TTTTATTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
9 4 0.11
10 26 0.74
11 5 0.14
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATATTTTATT
Found at i:431529 original size:5 final size:5
Alignment explanation
Indices: 431478--431514 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
431468 ATCTACAAAA
*
431478 ATATT TTATT ATATT ATATT ATATT ATATT ATATT AT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT AT
431515 TTTTATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
ATATT
Found at i:433879 original size:12 final size:12
Alignment explanation
Indices: 433864--433888 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
433854 AGAAAAAGAC
433864 AAGAAAGAAAAA
1 AAGAAAGAAAAA
433876 AAGAAAGAAAAA
1 AAGAAAGAAAAA
433888 A
1 A
433889 TATGTTGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAGAAAGAAAAA
Found at i:436724 original size:31 final size:31
Alignment explanation
Indices: 436689--436761 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
436679 AAATTTAAAA
436689 TTTGGTCACTTACGTTATCA-TTTTATTAAGT
1 TTTGGTCACTTACGTTAT-AGTTTTATTAAGT
*
436720 TTTGGTAACTTACGTTATAGTTTTATTAAGT
1 TTTGGTCACTTACGTTATAGTTTTATTAAGT
*
436751 TTTGGACACTT
1 TTTGGTCACTT
436762 GGATATTGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 1 0.03
31 37 0.97
ACGTcount: A:0.23, C:0.11, G:0.15, T:0.51
Consensus pattern (31 bp):
TTTGGTCACTTACGTTATAGTTTTATTAAGT
Found at i:438420 original size:50 final size:52
Alignment explanation
Indices: 438309--438423 Score: 155
Period size: 50 Copynumber: 2.2 Consensus size: 52
438299 AGGATTAAAT
* * * * *
438309 TTATTATTCTATTAGGAATTAAGATAGAGTTAAAATATAATTTTTTAGTTTA
1 TTATTATTTTATTAAGAATTAAGATAGAATCAAAATATAATTCTTTAGTTTA
438361 TTATTATTTTATTAAGAATT-AGATAGAATC-AAA-ATAATATCTTTAGTTTA
1 TTATTATTTTATTAAGAATTAAGATAGAATCAAAATATAAT-TCTTTAGTTTA
438411 TTATTATTTTATT
1 TTATTATTTTATT
438424 TAGTACATAC
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
49 5 0.09
50 26 0.46
51 8 0.14
52 18 0.32
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (52 bp):
TTATTATTTTATTAAGAATTAAGATAGAATCAAAATATAATTCTTTAGTTTA
Found at i:439997 original size:20 final size:20
Alignment explanation
Indices: 439972--440011 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
439962 ATTTTGATAA
439972 AAATATAATAATAAGTTAAG
1 AAATATAATAATAAGTTAAG
439992 AAATATAATAATAAGTTAAG
1 AAATATAATAATAAGTTAAG
440012 GGAATTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (20 bp):
AAATATAATAATAAGTTAAG
Found at i:442890 original size:15 final size:15
Alignment explanation
Indices: 442864--442919 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
442854 TTAATGGGGT
* *
442864 AAGAAGACAACGTCT
1 AAGAAGAAAACGTCA
*
442879 AGGAAGAAAACGTCA
1 AAGAAGAAAACGTCA
442894 AAGAAGAAAACGTCA
1 AAGAAGAAAACGTCA
442909 AAGAAGGAAAA
1 AAGAA-GAAAA
442920 AGAAAGCATC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
15 31 0.86
16 5 0.14
ACGTcount: A:0.57, C:0.12, G:0.23, T:0.07
Consensus pattern (15 bp):
AAGAAGAAAACGTCA
Found at i:447759 original size:2 final size:2
Alignment explanation
Indices: 447752--447810 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
447742 TCAATCTACA
447752 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
447794 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
447811 CGAAATACAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:448045 original size:83 final size:84
Alignment explanation
Indices: 447862--448073 Score: 279
Period size: 83 Copynumber: 2.5 Consensus size: 84
447852 AATGACATGT
* * *
447862 GCTTCAATGACACACAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACAAATGTGTGT
1 GCTTCAATGACGCTCAATGTAAGTCATACATGCGAGTCATAAATTTATGA-ACACAAATGTGTGT
447927 CAAGCAGATTTATGACGGGG
65 CAAGCAGATTTATGACGGGG
*
447947 GCTTCAATGAAGCTCAATGTAAGTCATACATGCGAGTCATAAATTTATG-ACACAAATGTGTGTC
1 GCTTCAATGACGCTCAATGTAAGTCATACATGCGAGTCATAAATTTATGAACACAAATGTGTGTC
*
448011 -ATCTTA-ATTTATGACGGGG
66 AAGC--AGATTTATGACGGGG
* * * *
448030 GCTTCAATGACGCTCAGTG-AACGTCATAAATGCGCGACATAAAT
1 GCTTCAATGACGCTCAATGTAA-GTCATACATGCGAGTCATAAAT
448074 GAGTGTCATA
Statistics
Matches: 114, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
82 4 0.04
83 64 0.56
84 1 0.01
85 45 0.39
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (84 bp):
GCTTCAATGACGCTCAATGTAAGTCATACATGCGAGTCATAAATTTATGAACACAAATGTGTGTC
AAGCAGATTTATGACGGGG
Found at i:448072 original size:13 final size:13
Alignment explanation
Indices: 448054--448096 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
448044 CAGTGAACGT
448054 CATAAATGCGCGA
1 CATAAATGCGCGA
* * *
448067 CATAAATGAGTGT
1 CATAAATGCGCGA
448080 CATAAATGCGCGA
1 CATAAATGCGCGA
448093 CATA
1 CATA
448097 GATTTATGAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (13 bp):
CATAAATGCGCGA
Found at i:450330 original size:16 final size:17
Alignment explanation
Indices: 450293--450348 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 17
450283 TACTCTTTCA
* *
450293 TTTATTGTATTGTATCT
1 TTTATTGTAGTATATCT
450310 TTTATTGTAGTATAT-T
1 TTTATTGTAGTATATCT
*
450326 TTTATTGTAGTATTTCT
1 TTTATTGTAGTATATCT
450343 TTTATT
1 TTTATT
450349 TACATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
16 15 0.43
17 20 0.57
ACGTcount: A:0.20, C:0.04, G:0.11, T:0.66
Consensus pattern (17 bp):
TTTATTGTAGTATATCT
Found at i:450974 original size:31 final size:32
Alignment explanation
Indices: 450914--450977 Score: 80
Period size: 31 Copynumber: 2.0 Consensus size: 32
450904 AATTATTAAA
450914 TTTTATTGATTGATAATTTTTATAATATAATAT
1 TTTTATTGATTGATAATTTTTAT-ATATAATAT
450947 TTTTATTG-TT-ATAATTATATTAT-TATAATAT
1 TTTTATTGATTGATAATT-T-TTATATATAATAT
450978 ATAATATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
31 14 0.48
32 3 0.10
33 12 0.41
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (32 bp):
TTTTATTGATTGATAATTTTTATATATAATAT
Found at i:450996 original size:29 final size:29
Alignment explanation
Indices: 450955--451012 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
450945 ATTTTTATTG
450955 TTATAATTATATTATT-ATAATATATAATA
1 TTATAATTATATT-TTAATAATATATAATA
450984 TTATACATT-TATTTTAATAATATATAATA
1 TTATA-ATTATATTTTAATAATATATAATA
451013 ACTTATTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 2 0.07
29 22 0.81
30 3 0.11
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (29 bp):
TTATAATTATATTTTAATAATATATAATA
Found at i:451860 original size:20 final size:20
Alignment explanation
Indices: 451822--451861 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
451812 TGTATCTATG
* * *
451822 ATTTTTAAATTATATTTAAA
1 ATTTTTAAATAAAAGTTAAA
451842 ATTTTTAAATAAAAGTTAAA
1 ATTTTTAAATAAAAGTTAAA
451862 TGCTTAAATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
ATTTTTAAATAAAAGTTAAA
Found at i:458551 original size:21 final size:21
Alignment explanation
Indices: 458521--458560 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
458511 CCAATAGACG
* *
458521 TTAATTATTTTTTAATTTTTA
1 TTAATCATTTTTAAATTTTTA
458542 TTAATCATTTTTAAATTTT
1 TTAATCATTTTTAAATTTT
458561 ACCTTTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (21 bp):
TTAATCATTTTTAAATTTTTA
Found at i:458734 original size:27 final size:26
Alignment explanation
Indices: 458681--458743 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 26
458671 AATTTTTTGA
* *
458681 AATTTATTATAACTATTTATTTTTTTT
1 AATTT-TTATAACCATTTATTTATTTT
458708 CAATTTTTATAACCATTT-TTTAATTTT
1 -AATTTTTATAACCATTTATTT-ATTTT
458735 ACATTTTTA
1 A-ATTTTTA
458744 AATTTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 4 0.13
27 22 0.71
28 5 0.16
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (26 bp):
AATTTTTATAACCATTTATTTATTTT
Found at i:458954 original size:21 final size:22
Alignment explanation
Indices: 458930--458979 Score: 73
Period size: 24 Copynumber: 2.2 Consensus size: 22
458920 AATGAAAGTG
458930 TTTTTCTAAGTTAAAGATTATT
1 TTTTTCTAAGTTAAAGATTATT
*
458952 TTTTCTCATAAGTTAGAGATTATT
1 TTTT-TC-TAAGTTAAAGATTATT
458976 TTTT
1 TTTT
458980 CTCATAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 4 0.16
23 2 0.08
24 19 0.76
ACGTcount: A:0.28, C:0.06, G:0.10, T:0.56
Consensus pattern (22 bp):
TTTTTCTAAGTTAAAGATTATT
Found at i:458966 original size:24 final size:24
Alignment explanation
Indices: 458936--458986 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
458926 AGTGTTTTTC
458936 TAAGTTAAAGATTATTTTTTCTCA
1 TAAGTTAAAGATTATTTTTTCTCA
*
458960 TAAGTTAGAGATTATTTTTTCTCA
1 TAAGTTAAAGATTATTTTTTCTCA
458984 TAA
1 TAA
458987 TAAATTAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (24 bp):
TAAGTTAAAGATTATTTTTTCTCA
Found at i:459424 original size:16 final size:17
Alignment explanation
Indices: 459403--459434 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
459393 TCCCCCCTCT
459403 ATTTG-TTTTTTACTTC
1 ATTTGTTTTTTTACTTC
459419 ATTTGTTTTTTTACTT
1 ATTTGTTTTTTTACTT
459435 TAAAATGTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.72
Consensus pattern (17 bp):
ATTTGTTTTTTTACTTC
Found at i:460525 original size:2 final size:2
Alignment explanation
Indices: 460520--460544 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
460510 TTCAAAAAAT
460520 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
460545 GAGTATGGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:461972 original size:20 final size:20
Alignment explanation
Indices: 461949--461986 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
461939 CGATATACCA
461949 GGTA-AAAATATGATAAAATC
1 GGTATAAAA-ATGATAAAATC
*
461969 GGTATCAAAATGATAAAA
1 GGTATAAAAATGATAAAA
461987 CCGTAAAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.55, C:0.05, G:0.16, T:0.24
Consensus pattern (20 bp):
GGTATAAAAATGATAAAATC
Found at i:462132 original size:179 final size:182
Alignment explanation
Indices: 461738--462208 Score: 684
Period size: 180 Copynumber: 2.6 Consensus size: 182
461728 CGATCCAAAT
* * * **
461738 AAAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGA-CAAACCGGTATTGAAATGAT
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
* * * * *
461802 -AAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTT
66 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* * *
461866 CGTGAATTTAAAAGAGAAACAGTTTTAAATCCTATAAAGTGTCGATACTTTT
131 CGTGAATTTAAAAGAGAAACAGTTTTAAAGCCTATAAAGTGTCAATACTTTA
* *
461918 AAAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAATCGGTATCAAAATGAT
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
*
461983 AAAACC-GTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTT
66 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* * ** *
462046 TGTGAATTTAAAAG-GAAGCAGTTTTAGCGCCTATAATGTGTCAATACTTTA
131 CGTGAATTTAAAAGAGAAACAGTTTTAAAGCCTATAAAGTGTCAATACTTTA
*
462097 AAAAAATATATCGAT-CAACAACGATATAACAGGTAAAAATATGATAAAAACCGGTATCAAAATG
1 AAAAAATGTATCGATCCAA-AACGATATAACAGGTAAAAATATGAT-AAAACCGGTATCAAAATG
462161 ATAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
64 ATAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
462209 CGTAAGTACG
Statistics
Matches: 262, Mismatches: 24, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
178 3 0.01
179 69 0.26
180 97 0.37
181 88 0.34
182 5 0.02
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (182 bp):
AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
CGTGAATTTAAAAGAGAAACAGTTTTAAAGCCTATAAAGTGTCAATACTTTA
Found at i:462152 original size:21 final size:19
Alignment explanation
Indices: 462128--462175 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
462118 CGATATAACA
462128 GGTAAAAATATGATAAAAACC
1 GGTAAAAA-ATGAT-AAAACC
*
462149 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
462169 GGTAAAA
1 GGTAAAA
462176 CGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 10 0.42
21 9 0.38
22 3 0.12
ACGTcount: A:0.54, C:0.10, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:464453 original size:21 final size:21
Alignment explanation
Indices: 464394--464446 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
464384 AAGACAATCA
* *
464394 AGAGTGGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
464415 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
464436 AGAGTCGAAGA
1 AGAGTCGAAGA
464447 TACACTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.43, C:0.08, G:0.34, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:464458 original size:21 final size:21
Alignment explanation
Indices: 464394--464458 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
464384 AAGACAATCA
* * *
464394 AGAGTGGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTAAG
*
464415 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTAAG
* *
464436 AGAGTCGAAGATACACTTAAG
1 AGAGTCGAAGAGAAACTTAAG
464457 AG
1 AG
464459 GCATAAGGGG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.43, C:0.09, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTAAG
Found at i:464534 original size:33 final size:33
Alignment explanation
Indices: 464492--464557 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
464482 AAATAGATGG
*
464492 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
464525 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
464558 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:466374 original size:19 final size:19
Alignment explanation
Indices: 466350--466398 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
466340 AATGTAGGGT
466350 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
466369 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
466388 TAATTTTGTAT
1 TAATTTTGTAT
466399 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:467409 original size:200 final size:200
Alignment explanation
Indices: 466632--467390 Score: 1296
Period size: 200 Copynumber: 3.8 Consensus size: 200
466622 AATTTACAAT
*
466632 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
466697 CGAAACCCAAAAGTATAATATAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATATAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * * *
466762 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTATGTCGATATTGTTGGCCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCAACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
466827 AATGA
196 AATGA
*
466832 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
466897 CGAAACCCATAAGTATAATGTAATAGGTATTTTTTCAATCTAA-C----CAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATATAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
466957 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCAACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
467022 AATGA
196 AATGA
467027 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
467092 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATATAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
467157 ATGATAGAATAGGTCTAAATAATGTATCAACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCAACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
467222 AATGA
196 AATGA
*
467227 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
467292 CGAAACCCAAAAGTATAATATATTAGGTAATTTTTCAATCTAACCGGTATAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATATAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* *
467357 ATGAGAGAATTGGTATATAAT-ATGTATCAACACT
131 ATGAGAGAATAGGTCTA-AATAATGTATCAACACT
467391 GTTTAATGTT
Statistics
Matches: 533, Mismatches: 20, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
195 189 0.35
196 1 0.00
199 1 0.00
200 339 0.64
201 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCAAAAGTATAATATAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCAACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:468851 original size:6 final size:6
Alignment explanation
Indices: 468840--468879 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
468830 CAAGCGGTCA
* * *
468840 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGAAG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
468880 CGATTATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.42, C:0.07, G:0.33, T:0.17
Consensus pattern (6 bp):
ATGAAG
Found at i:468903 original size:12 final size:12
Alignment explanation
Indices: 468840--468883 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
468830 CAAGCGGTCA
*
468840 ATGAAGATGAAG
1 ATGACGATGAAG
*
468852 CTGACGATGAAG
1 ATGACGATGAAG
468864 ATGACGATGAAG
1 ATGACGATGAAG
468876 ATGACGAT
1 ATGACGAT
468884 TATTATGATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.41, C:0.09, G:0.32, T:0.18
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:470458 original size:183 final size:183
Alignment explanation
Indices: 470116--470685 Score: 973
Period size: 183 Copynumber: 3.1 Consensus size: 183
470106 CAAAGTTTTT
* ** *
470116 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAGAAATGTGTCGATAATTTTT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
* * *
470181 CAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAA
66 CAAAAAGTGTCGACATT---TACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAA
* **
470244 TATAATCGGTATAAATATACCGGTTTTATGAGATAATAGGTCTACAACCTATATCG
128 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
470300 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
470365 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
470430 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
470483 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
470548 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
** * *
470613 AACAAGTATAAATATACCGGTTTTATCAGCGAATTGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
470666 ACACTTTTTAATATTGTGTC
1 ACACTTTTTAATATTGTGTC
470686 ACTAATTTTA
Statistics
Matches: 370, Mismatches: 14, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
183 294 0.79
184 73 0.20
186 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:474143 original size:87 final size:87
Alignment explanation
Indices: 474038--474291 Score: 447
Period size: 87 Copynumber: 2.9 Consensus size: 87
474028 AAATAGGTCA
* *
474038 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
*
474103 CCCGTTAAATACCTATTTTATT
66 CCCGTTAAATACATATTTTATT
* *
474125 ATATAAGCGTTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTTATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
474190 CCCGTTAAATACATATTTTATT
66 CCCGTTAAATACATATTTTATT
474212 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
*
474277 CCGGTTAAATA-ATAT
66 CCCGTTAAATACATAT
474292 AACATAACCG
Statistics
Matches: 159, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
86 4 0.03
87 155 0.97
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.43
Consensus pattern (87 bp):
ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
CCCGTTAAATACATATTTTATT
Found at i:474172 original size:23 final size:23
Alignment explanation
Indices: 474122--474166 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
474112 TACCTATTTT
* *
474122 ATTATATAAGCGTTATCTATTAC
1 ATTATATAAGCGTTACCTAATAC
474145 ATTATATAAGCGTTACCTAATA
1 ATTATATAAGCGTTACCTAATA
474167 TGTTATTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (23 bp):
ATTATATAAGCGTTACCTAATAC
Found at i:474259 original size:23 final size:23
Alignment explanation
Indices: 474209--474253 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
474199 TACATATTTT
* *
474209 ATTATATAAGCGCTATCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
474232 ATTATATAAGCGTTACCTAATA
1 ATTATATAAGCGCTACCTAATA
474254 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:478867 original size:31 final size:29
Alignment explanation
Indices: 478832--478907 Score: 73
Period size: 31 Copynumber: 2.4 Consensus size: 29
478822 ATACGTTTTA
*
478832 TGAACAGTAAAATACG-ATATGAATAGTACCG
1 TGAACAGTAAAATA-GTA-ATGAACAGT-CCG
*
478863 TGAACAATAATGAATAGTAATGAACAGTCCG
1 TGAACAGTAA--AATAGTAATGAACAGTCCG
478894 TGAACAGTGAAAAT
1 TGAACAGT-AAAAT
478908 TTCAAATATC
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
30 3 0.08
31 19 0.50
32 11 0.29
33 5 0.13
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.22
Consensus pattern (29 bp):
TGAACAGTAAAATAGTAATGAACAGTCCG
Found at i:479608 original size:31 final size:31
Alignment explanation
Indices: 479584--479724 Score: 264
Period size: 31 Copynumber: 4.5 Consensus size: 31
479574 CATAGATTCT
* *
479584 GAAGAACCTAGGTAAATAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
479615 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
479646 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
479677 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
479708 GAAGAACATAGGTAAAC
1 GAAGAACATAGGTAAAC
479725 CCTCGACCCT
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.19
Consensus pattern (31 bp):
GAAGAACATAGGTAAACAGTCCATATGTCCC
Found at i:482407 original size:25 final size:25
Alignment explanation
Indices: 482352--482400 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
482342 TGATCTAACT
*
482352 GTTGACTTTGACCTGACCATTGATC
1 GTTGACTTTGACATGACCATTGATC
*
482377 GTTGACTTTGACATAGACCGTTGA
1 GTTGACTTTGACAT-GACCATTGA
482401 CTTTGACCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (25 bp):
GTTGACTTTGACATGACCATTGATC
Found at i:487203 original size:27 final size:27
Alignment explanation
Indices: 487163--487232 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
487153 AGACAGAAGG
487163 AAAAT-ACTGAAATACCCTTAAACTAT
1 AAAATAACTGAAATACCCTTAAACTAT
* * * *
487189 AAAATAACCGAAATACCCTTGAAGTGT
1 AAAATAACTGAAATACCCTTAAACTAT
*
487216 AAAATAACTAAAATACC
1 AAAATAACTGAAATACC
487233 TCAAGCCCTG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 5 0.14
27 32 0.86
ACGTcount: A:0.51, C:0.19, G:0.07, T:0.23
Consensus pattern (27 bp):
AAAATAACTGAAATACCCTTAAACTAT
Found at i:487273 original size:26 final size:26
Alignment explanation
Indices: 487163--487280 Score: 82
Period size: 26 Copynumber: 4.5 Consensus size: 26
487153 AGACAGAAGG
* *
487163 AAAAT-ACTGAAATACCCTTAAACTAT
1 AAAATAACT-AAATACCCTTAAGCTCT
* *
487189 AAAATAACCGAAATACCCTTGAAG-TGT
1 AAAATAA-CTAAATACCCTT-AAGCTCT
* *
487216 AAAATAACTAAAATA-CCTCAAGCCCT
1 AAAATAACT-AAATACCCTTAAGCTCT
** *
487242 GGAATGACTAAATACCCTTAAGCTCT
1 AAAATAACTAAATACCCTTAAGCTCT
487268 AAAATGAA-TAAAT
1 AAAAT-AACTAAAT
487281 CTACCTCGAA
Statistics
Matches: 70, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
25 8 0.11
26 33 0.47
27 26 0.37
28 3 0.04
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.24
Consensus pattern (26 bp):
AAAATAACTAAATACCCTTAAGCTCT
Found at i:490601 original size:64 final size:64
Alignment explanation
Indices: 490533--490688 Score: 174
Period size: 64 Copynumber: 2.4 Consensus size: 64
490523 TTGAAGGTGT
* * **
490533 ATCGATGCACGGGTAGTGAATCGATGCACTCTTTTAA-AATATAAACATCGAATGCA-ATTAGTG
1 ATCGATGCACAGGTAGTGCATCGATGCACTCCATTAATAATA-AAACATCGAATGCATATTA-TG
490596 C
64 C
* * * *
490597 ATCGATGCATAAGGCA-TGCATCGATGCATTCCATTAATAATAAAACATCGAATGCATTTTATGC
1 ATCGATGCA-CAGGTAGTGCATCGATGCACTCCATTAATAATAAAACATCGAATGCATATTATGC
* *
490661 ACCGATGCACAAGTAGTGCATCGATGCA
1 ATCGATGCACAGGTAGTGCATCGATGCA
490689 TACCTTCATT
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
63 3 0.04
64 63 0.83
65 10 0.13
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (64 bp):
ATCGATGCACAGGTAGTGCATCGATGCACTCCATTAATAATAAAACATCGAATGCATATTATGC
Found at i:491109 original size:29 final size:29
Alignment explanation
Indices: 491066--491146 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
491056 TATGTGATAT
491066 GAGAACATGACATGAGCTACATGATCACAA
1 GAGAA-ATGACATGAGCTACATGATCACAA
* *
491096 GAGAAATGAGATGATCTACATGATCACAA
1 GAGAAATGACATGAGCTACATGATCACAA
491125 GAGAAATGACATGAG-TACATGA
1 GAGAAATGACATGAGCTACATGA
491147 ACATATGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
28 7 0.15
29 35 0.74
30 5 0.11
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (29 bp):
GAGAAATGACATGAGCTACATGATCACAA
Found at i:491249 original size:15 final size:15
Alignment explanation
Indices: 491231--491264 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
491221 GAGGGTATAA
491231 TAGTCCTTCGGGACG
1 TAGTCCTTCGGGACG
491246 TAGTCCTTCGGGACG
1 TAGTCCTTCGGGACG
491261 TAGT
1 TAGT
491265 GGTCCTACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.15, C:0.24, G:0.32, T:0.29
Consensus pattern (15 bp):
TAGTCCTTCGGGACG
Found at i:497608 original size:63 final size:64
Alignment explanation
Indices: 497460--497609 Score: 180
Period size: 64 Copynumber: 2.4 Consensus size: 64
497450 AAGGTGTATT
* ** * *
497460 GATGCACAGGTAGTGCATCGATGTACTCTTTTAAAATATAAACATCGAATGTAATTAGTGCATC
1 GATGCACAAGTAGTGCATCGATGTACTCCATTAAAATATAAACATCGAATGCAATTAGTGCACC
* * * *
497524 GATGCATAAG-ACATGCATCGATGTATTCCATTAATAATA-AAACATCGAATGCATTTA-TGCAC
1 GATGCACAAGTA-GTGCATCGATGTACTCCATTAA-AATATAAACATCGAATGCAATTAGTGCAC
497586 C
64 C
497587 GATGCACAAGTAGTGCATCGATG
1 GATGCACAAGTAGTGCATCGATG
497610 CATACCTTCA
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
63 25 0.35
64 43 0.60
65 4 0.06
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (64 bp):
GATGCACAAGTAGTGCATCGATGTACTCCATTAAAATATAAACATCGAATGCAATTAGTGCACC
Found at i:498041 original size:29 final size:29
Alignment explanation
Indices: 497998--498078 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
497988 ATGAGAACAT
497998 GAGAACATGACATGAGCTACATGATCACAA
1 GAGAA-ATGACATGAGCTACATGATCACAA
* *
498028 GAGAAATGACATGATCTACATAATCACAA
1 GAGAAATGACATGAGCTACATGATCACAA
498057 GAGAAATGACATGAG-TACATGA
1 GAGAAATGACATGAGCTACATGA
498079 ACATATGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
28 6 0.13
29 36 0.77
30 5 0.11
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.19
Consensus pattern (29 bp):
GAGAAATGACATGAGCTACATGATCACAA
Found at i:502795 original size:21 final size:20
Alignment explanation
Indices: 502747--502799 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
502737 AAACTATTCG
** *
502747 TCAGTATCGATATTGGTCTC
1 TCAGTATCGATATTGACCCC
*
502767 TTAGTATCGATATTGAACCCC
1 TCAGTATCGATATTG-ACCCC
502788 TCAGTATCGATA
1 TCAGTATCGATA
502800 CACACCTGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (20 bp):
TCAGTATCGATATTGACCCC
Found at i:507455 original size:13 final size:13
Alignment explanation
Indices: 507437--507483 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
507427 AATGATAAAT
*
507437 AATAAAAAATTAC
1 AATAAAAAACTAC
*
507450 AAT-AAAAAGT-C
1 AATAAAAAACTAC
507461 TAATAAAAAACTAC
1 -AATAAAAAACTAC
507475 AATAAAAAA
1 AATAAAAAA
507484 GTACTAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 1 0.03
12 9 0.31
13 18 0.62
14 1 0.03
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.19
Consensus pattern (13 bp):
AATAAAAAACTAC
Found at i:509739 original size:29 final size:29
Alignment explanation
Indices: 509678--509751 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
509668 ATATCTACAA
* *
509678 AAAATTAATTAAATAAAATATTAAACAATT
1 AAAA-TAATTAAATAAAATACTAAACAACT
*
509708 AAAATAATTAAATAAATTACTAAA-ATACT
1 AAAATAATTAAATAAAATACTAAACA-ACT
*
509737 AAATATAATAAAATA
1 AAA-ATAATTAAATA
509752 TATCTTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 23 0.61
30 14 0.37
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (29 bp):
AAAATAATTAAATAAAATACTAAACAACT
Found at i:510835 original size:2 final size:2
Alignment explanation
Indices: 510828--510883 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
510818 AAAGAAAGTA
510828 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
510870 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
510884 TAAATGAGTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:511200 original size:2 final size:2
Alignment explanation
Indices: 511195--511220 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
511185 ATATATGCAC
511195 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
511221 GAGTAATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:511289 original size:329 final size:332
Alignment explanation
Indices: 510862--511488 Score: 767
Period size: 329 Copynumber: 1.9 Consensus size: 332
510852 ATATATATAT
* * *
510862 ATATATATATATATATATATATTAAATGAGTATTGGATTTTATTTAATGGATATTTATTATTTAT
1 ATATATATATATATATATATATTAAATGAGTAATGGATTTGATTTAATGGACA-TTATTATTTAT
* *
510927 TTATATATTCTCACATATAAGCAAGCTGGATCCTAAC-AGGATCCTACGGTAACAAAAGCAAGTC
65 TTATATAGTCTCACATATAAGCAAGCTGGATCCTAACGA-GATCCTACGATAACAAAAGCAAGTC
* * * * * * *
510991 GAACCATCATAATGATAT-AGTAAAAGCAAGGGTCCTGCCCCATTTTCCTTCTCCCAAATCGGGT
129 AAACAAT-AGAATGATATGA-TAAAAGCAAGGGACCTGCCCCATTTTCCATCTCCCAAATCCGGC
* * *
511055 GGAAACATAGAA-TCGTTGGGGGA-TT-TTTTTTTACTTTTAAAATTTAAAAGTATATT-GAGTT
192 AGAAACATAGAATTC--T-GGGGATTTATTTTTTTACTTTTAAAATTCAAAAGTATATTGGAGGT
* *
511116 ATGAATG-GATTTTATGAA-TGTTTTTTACATGGATTCTAATTTATAAAAATGGGCTTTATTATT
254 ATGAATGAG-TTTTAAGAACT-TTTTTTACATGAATTCTAATTTATAAAAATGGGCTTTATTATT
511179 AAAAAAATATATGCAC
317 AAAAAAATATATGCAC
*
511195 ATATATATATATATATATATA-TATATGAGTAATGGATTTGATTTAATGGACA-TA-TATTTATT
1 ATATATATATATATATATATATTAAATGAGTAATGGATTTGATTTAATGGACATTATTATTTATT
* ** * *
511257 TACT-TAGTCTTAGTTATAAGCAA-ATCGGATCCTAACGAGATCCTACGATAACAAAAGTAAGTC
66 TA-TATAGTCTCACATATAAGCAAGCT-GGATCCTAACGAGATCCTACGATAACAAAAGCAAGTC
* ** * *
511320 AAACAATAGAGTGATATGATAAAAGCAAGGGACCTGCTTCATTTTTCATCTCCTAAATCCGGCAG
129 AAACAATAGAATGATATGATAAAAGCAAGGGACCTGCCCCATTTTCCATCTCCCAAATCCGGCAG
* * *
511385 CAACATAGAATTCTGGTGATTTATTTTTTTACTTTTAAAATTCAAAAGTATATTGGGGGTATGAA
194 AAACATAGAATTCTGGGGATTTATTTTTTTACTTTTAAAATTCAAAAGTATATTGGAGGTATGAA
* *
511450 TGAGTTTTAAGAACTTTTTTTACTTGAATTCTACTTTAT
259 TGAGTTTTAAGAACTTTTTTTACATGAATTCTAATTTAT
511489 TATTAAAAAA
Statistics
Matches: 251, Mismatches: 33, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
326 4 0.02
327 3 0.01
328 85 0.34
329 105 0.42
330 6 0.02
332 27 0.11
333 21 0.08
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (332 bp):
ATATATATATATATATATATATTAAATGAGTAATGGATTTGATTTAATGGACATTATTATTTATT
TATATAGTCTCACATATAAGCAAGCTGGATCCTAACGAGATCCTACGATAACAAAAGCAAGTCAA
ACAATAGAATGATATGATAAAAGCAAGGGACCTGCCCCATTTTCCATCTCCCAAATCCGGCAGAA
ACATAGAATTCTGGGGATTTATTTTTTTACTTTTAAAATTCAAAAGTATATTGGAGGTATGAATG
AGTTTTAAGAACTTTTTTTACATGAATTCTAATTTATAAAAATGGGCTTTATTATTAAAAAAATA
TATGCAC
Found at i:511760 original size:2 final size:2
Alignment explanation
Indices: 511726--511750 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
511716 AAAAAAAAAG
511726 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
511751 GGACATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:512089 original size:80 final size:80
Alignment explanation
Indices: 511984--512140 Score: 215
Period size: 80 Copynumber: 2.0 Consensus size: 80
511974 CTTTATTATT
* * * *
511984 TAACAGGTTTGGTAATATCAATTATTTAACAGGTTAATCTCATGTTCGGGTTAATAACAATCGGA
1 TAACAGGTCTGGTAATACCAATTATTTAACAGGTTAATCTCAGGTTCGAGTTAATAACAATCGGA
*
512049 TGTAGGTCAGGTCTA
66 TGCAGGTCAGGTCTA
* * * ** *
512064 TAACAGGTCTGGTAATACCAGTTATTTAACATGTTAATCTTAGGTTCGAGTTCGTAACAGTCGGA
1 TAACAGGTCTGGTAATACCAATTATTTAACAGGTTAATCTCAGGTTCGAGTTAATAACAATCGGA
512129 TGCAGGTCAGGT
66 TGCAGGTCAGGT
512141 TTGTGTTATC
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (80 bp):
TAACAGGTCTGGTAATACCAATTATTTAACAGGTTAATCTCAGGTTCGAGTTAATAACAATCGGA
TGCAGGTCAGGTCTA
Found at i:512345 original size:51 final size:51
Alignment explanation
Indices: 512288--512392 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
512278 TGTTTTAACT
512288 CAAATCGATTTCAATAAGATTTGCAAGTAAAATCAACTTTTTACATCCTAC
1 CAAATCGATTTCAATAAGATTTGCAAGTAAAATCAACTTTTTACATCCTAC
512339 CAAATCGATTTCAATAAGATTTGCAAGTAAAATCAACTTTTTACATCCTAC
1 CAAATCGATTTCAATAAGATTTGCAAGTAAAATCAACTTTTTACATCCTAC
512390 CAA
1 CAA
512393 TTGTATAATA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (51 bp):
CAAATCGATTTCAATAAGATTTGCAAGTAAAATCAACTTTTTACATCCTAC
Found at i:517298 original size:20 final size:19
Alignment explanation
Indices: 517263--517306 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
517253 CAGGTACAAC
517263 AAAAAACTAAAAAAAAATT
1 AAAAAACTAAAAAAAAATT
*
517282 AAAAAA-TAAAGATAAAACTT
1 AAAAAACTAAA-A-AAAAATT
517302 AAAAA
1 AAAAA
517307 GTGTTGTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 7 0.32
20 11 0.50
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (19 bp):
AAAAAACTAAAAAAAAATT
Found at i:518128 original size:21 final size:21
Alignment explanation
Indices: 518102--518151 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
518092 ATTTGGGTAC
518102 TAAACAATCAAA-CGATTGCTA
1 TAAACAAT-AAACCGATTGCTA
518123 TAAACAA-AAACCGATTGCTA
1 TAAACAATAAACCGATTGCTA
518143 TAAAACAAT
1 T-AAACAAT
518152 GCACCAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 3 0.12
20 10 0.38
21 13 0.50
ACGTcount: A:0.52, C:0.18, G:0.08, T:0.22
Consensus pattern (21 bp):
TAAACAATAAACCGATTGCTA
Found at i:519430 original size:31 final size:31
Alignment explanation
Indices: 519388--519464 Score: 145
Period size: 31 Copynumber: 2.5 Consensus size: 31
519378 AAAAATTAAA
*
519388 AATTTAAGTACTAAAACGGACCAAAACTGAT
1 AATTTATGTACTAAAACGGACCAAAACTGAT
519419 AATTTATGTACTAAAACGGACCAAAACTGAT
1 AATTTATGTACTAAAACGGACCAAAACTGAT
519450 AATTTATGTACTAAA
1 AATTTATGTACTAAA
519465 CGAATAACTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (31 bp):
AATTTATGTACTAAAACGGACCAAAACTGAT
Found at i:519540 original size:2 final size:2
Alignment explanation
Indices: 519535--519564 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
519525 TATAACGTAA
519535 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
519565 GTGTGTGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:523529 original size:2 final size:2
Alignment explanation
Indices: 523522--523564 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
523512 CGGATGGGGG
523522 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
523564 T
1 T
523565 GTTTTAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:524801 original size:25 final size:25
Alignment explanation
Indices: 524773--524827 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
524763 GTTCATTGGA
524773 TTATTGATACATGTCAACATTTTAG
1 TTATTGATACATGTCAACATTTTAG
524798 TTATTGATACATGTCAACATTTTAG
1 TTATTGATACATGTCAACATTTTAG
524823 TTATT
1 TTATT
524828 AATCTTATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (25 bp):
TTATTGATACATGTCAACATTTTAG
Found at i:525905 original size:2 final size:2
Alignment explanation
Indices: 525900--525930 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
525890 ATTTGATTTA
525900 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
525931 ATTTTGATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:525982 original size:21 final size:21
Alignment explanation
Indices: 525940--525982 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
525930 AATTTTGATA
*
525940 TTATGTTTGATATTTATAAAT
1 TTATGTTTGATATATATAAAT
* *
525961 TTATGTTTGGTATATATTAAT
1 TTATGTTTGATATATATAAAT
525982 T
1 T
525983 AATTCAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (21 bp):
TTATGTTTGATATATATAAAT
Found at i:527044 original size:26 final size:25
Alignment explanation
Indices: 527005--527053 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
526995 AAGTTGAGTG
*
527005 ATAAAATATATAATTTTTTATTATTT
1 ATAAAATATATAA-TTATTATTATTT
* *
527031 ATAAATTATTTAATTATTATTAT
1 ATAAAATATATAATTATTATTAT
527054 AAAAAATGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
ATAAAATATATAATTATTATTATTT
Found at i:527046 original size:19 final size:19
Alignment explanation
Indices: 527011--527048 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
527001 AGTGATAAAA
*
527011 TATATAATTTTTTATTATT
1 TATATAATTTTTAATTATT
527030 TATA-AATTATTTAATTATT
1 TATATAATT-TTTAATTATT
527049 ATTATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TATATAATTTTTAATTATT
Found at i:528176 original size:3 final size:3
Alignment explanation
Indices: 528161--528229 Score: 104
Period size: 3 Copynumber: 23.0 Consensus size: 3
528151 CCTTCTCGGG
*
528161 TTC TTC CTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTTC TT-
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC
*
528206 TTC TTC TTC TTC TTC GTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC
528230 AGGGGGATCA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.03
3 55 0.92
4 3 0.05
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:529400 original size:6 final size:6
Alignment explanation
Indices: 529389--529414 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
529379 TCTCCGAATG
529389 GTGCTC GTGCTC GTGCTC GTGCTC GT
1 GTGCTC GTGCTC GTGCTC GTGCTC GT
529415 CTGGGACGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.31, G:0.35, T:0.35
Consensus pattern (6 bp):
GTGCTC
Done.