Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008936.1 Hibiscus syriacus cultivar Beakdansim tig00112254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 973811
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 5
Found at i:854056 original size:97 final size:98
Alignment explanation
Indices: 853941--854139 Score: 274
Period size: 97 Copynumber: 2.0 Consensus size: 98
853931 CGGTAAAATA
* * * *
853941 AAATAGGTGTTACCTATTACGTTAAAATATCGACTGGTTTGTTTAAAGGCTACTAATAATGTAAA
1 AAATAAGTGTTACATATTACGTTAAAATAGCGACTGGTTTGTTTAAAGGCTAATAATAATGTAAA
* *
854006 CGATAAAA-AAAATAGGTGCTACCTATTAAGTT
66 CGATAAAATAAAATAGGCGCTACCTACTAAGTT
* * * * *
854038 AAATAAGTGTTACATATTATGTTAAACTAGCTACTTGTTTGTTTAAATGCTAATAATAATGTAAA
1 AAATAAGTGTTACATATTACGTTAAAATAGCGACTGGTTTGTTTAAAGGCTAATAATAATGTAAA
* *
854103 CGGTAAAATAAAATAGGCGCTACCTACTATGTT
66 CGATAAAATAAAATAGGCGCTACCTACTAAGTT
854136 AAAT
1 AAAT
854140 TACCTACCGG
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
97 63 0.72
98 25 0.28
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (98 bp):
AAATAAGTGTTACATATTACGTTAAAATAGCGACTGGTTTGTTTAAAGGCTAATAATAATGTAAA
CGATAAAATAAAATAGGCGCTACCTACTAAGTT
Found at i:854174 original size:75 final size:75
Alignment explanation
Indices: 854048--854214 Score: 217
Period size: 75 Copynumber: 2.2 Consensus size: 75
854038 AAATAAGTGT
* * * ** * * *
854048 TACATATTATGTTAAACTAGCTACTTGTTTGTTTAAATGCTAATAATAATGTAAACGGTAAAATA
1 TACATACTATGTTAAATTACCTACCGGTTTGTTTAAAGGCTAATAACAATGTAAACGATAAAATA
*
854113 AAATAGGCGC
66 AAATAGACGC
* * *
854123 TACCTACTATGTTAAATTACCTACCGGTTTGTTTAAAGGTTATTAACAATGTAAACGATAAAATA
1 TACATACTATGTTAAATTACCTACCGGTTTGTTTAAAGGCTAATAACAATGTAAACGATAAAATA
854188 AAATAGACGC
66 AAATAGACGC
*
854198 TACATATTATGTTAAAT
1 TACATACTATGTTAAAT
854215 AAGCGCTACC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
75 78 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (75 bp):
TACATACTATGTTAAATTACCTACCGGTTTGTTTAAAGGCTAATAACAATGTAAACGATAAAATA
AAATAGACGC
Found at i:854176 original size:172 final size:173
Alignment explanation
Indices: 853866--854236 Score: 465
Period size: 172 Copynumber: 2.2 Consensus size: 173
853856 GGTTAAAATA
* * * * * *
853866 AAATAGGCGCTACCTATTATGTTAAATTACCTACCGGTTTATTTGAATGTTACTAACAATGTAAA
1 AAATAAGCGCTACATATTATGTTAAACTACCTACCGGTTTATTTAAATGCTAATAACAATGTAAA
* * * * *
853931 CGGTAAAATAAAATAGGTGTTACCTATTACGTTAAAATATCGACTGGTTTGTTTAAAGGCTACTA
66 CGGTAAAATAAAATAGGCGCTACCTACTACGTTAAAATACCGACCGGTTTGTTTAAAGGCTACTA
* ** *
853996 ATAATGTAAACGATAAAA-AAAATAGGTGCTACCTATTAAGTT
131 ACAATGTAAACGATAAAATAAAATAGACGCTACATATTAAGTT
* * * ** * *
854038 AAATAAGTGTTACATATTATGTTAAACTAGCTACTTGTTTGTTTAAATGCTAATAATAATGTAAA
1 AAATAAGCGCTACATATTATGTTAAACTACCTACCGGTTTATTTAAATGCTAATAACAATGTAAA
* * * * *
854103 CGGTAAAATAAAATAGGCGCTACCTACTATGTTAAATTACCTACCGGTTTGTTTAAAGGTTATTA
66 CGGTAAAATAAAATAGGCGCTACCTACTACGTTAAAATACCGACCGGTTTGTTTAAAGGCTACTA
*
854168 ACAATGTAAACGATAAAATAAAATAGACGCTACATATTATGTT
131 ACAATGTAAACGATAAAATAAAATAGACGCTACATATTAAGTT
* *
854211 AAATAAGCGCTACCTATTACGTTAAA
1 AAATAAGCGCTACATATTATGTTAAA
854237 TAAGCGTTAC
Statistics
Matches: 166, Mismatches: 32, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
172 124 0.75
173 42 0.25
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (173 bp):
AAATAAGCGCTACATATTATGTTAAACTACCTACCGGTTTATTTAAATGCTAATAACAATGTAAA
CGGTAAAATAAAATAGGCGCTACCTACTACGTTAAAATACCGACCGGTTTGTTTAAAGGCTACTA
ACAATGTAAACGATAAAATAAAATAGACGCTACATATTAAGTT
Found at i:854221 original size:23 final size:23
Alignment explanation
Indices: 854195--854259 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
854185 ATAAAATAGA
* *
854195 CGCTACATATTATGTTAAATAAG
1 CGCTACCTATTACGTTAAATAAG
854218 CGCTACCTATTACGTTAAATAAG
1 CGCTACCTATTACGTTAAATAAG
*
854241 CGTTACCTATTACGTTAAA
1 CGCTACCTATTACGTTAAA
854260 CTAACTATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (23 bp):
CGCTACCTATTACGTTAAATAAG
Found at i:854533 original size:153 final size:150
Alignment explanation
Indices: 854290--854575 Score: 421
Period size: 153 Copynumber: 1.9 Consensus size: 150
854280 AGGTTAATAA
* ** *
854290 TAATGTAAACGGTAAAATATATACAACTTAATTGTTTGATTTTTTTTTAAATTCGAAAGTATGAA
1 TAATATAAACGGTAAAATATATACAACTTAACCGTTTGATTTTTTTTAAAATTCGAAAGTATGAA
* *
854355 TACTTACACGAAAAGTATGGATACTCTAAGGGTAAATAATAATGTATCCATACTTACTCTAAAAG
66 TACTTACACGAAAAATATGGATACTCTAAAGGTAAATAATAATGTATCCATACTTACTCTAAAAG
854420 TATGGGTACTGTTTCGACAG
131 TATGGGTACTGTTTCGACAG
*
854440 TAATATAAACGGTAAAATATATACAACTTAACCGTTTGAAATATTTTTTTAAAATTTGAAAGTAT
1 TAATATAAACGGTAAAATATATACAACTTAACCGTTTG--AT-TTTTTTTAAAATTCGAAAGTAT
* ** * *
854505 GGATACTTATTCTAAAAATAT-GAGTACTCTAAAGGTTAATAATAATGTATCCATACTTACTCTA
63 GAATACTTACACGAAAAATATGGA-TACTCTAAAGGTAAATAATAATGTATCCATACTTACTCTA
854569 AAAGTAT
127 AAAGTAT
854576 TGATATTTCT
Statistics
Matches: 120, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
150 35 0.29
152 4 0.03
153 81 0.68
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (150 bp):
TAATATAAACGGTAAAATATATACAACTTAACCGTTTGATTTTTTTTAAAATTCGAAAGTATGAA
TACTTACACGAAAAATATGGATACTCTAAAGGTAAATAATAATGTATCCATACTTACTCTAAAAG
TATGGGTACTGTTTCGACAG
Found at i:855891 original size:23 final size:24
Alignment explanation
Indices: 855865--855913 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
855855 AATAACATAT
*
855865 TAGGTAGCGCTTATATAAT-GTAA
1 TAGGTAGAGCTTATATAATAGTAA
855888 TAGGTAGAGCTTATATAATAGTAA
1 TAGGTAGAGCTTATATAATAGTAA
855912 TA
1 TA
855914 TTATCAAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35
Consensus pattern (24 bp):
TAGGTAGAGCTTATATAATAGTAA
Found at i:856336 original size:198 final size:199
Alignment explanation
Indices: 855987--856468 Score: 532
Period size: 198 Copynumber: 2.4 Consensus size: 199
855977 AAATTTAAAA
* * * * *
855987 CGGTTACATTATACATTGACCTATTACATTAT-GTATATCGGTTTCGATGTTTTCG-GGATCGAT
1 CGGTTACATTGTAAATTTACCTATTACATTATAAT-TATCGGTTTCGATGATTTCGAGGATCGAT
* * * * *
856050 ACAATTTT-AAATGTATCGACACTTTATGCGTGCAACTCGTTTGTGCTTTATTTTGGAAAAAAGT
65 AC-TTTTTAAAATGTATCGACACTTTAAGCGTACAACTCGTTTGTCCTTCATTTTGGAAAAAAGT
* * * *
856114 ATAGACACATATTTAAAGAGTGTCGATACATAATGTAAACCTATT-TGCTAATTAA-CCGATATA
129 ATAGACACAAATTAAAAAAGTGTCGATACATAATGTAAACCTATTCT-CTAATGAACCCGATATA
856177 TTT-TAAC
193 TTTCT-AC
* * *
856184 CGGTTACATTGTAAATTTACCTGTTACATAATAATTATCGATTTCGATG-TTTCGAGGATCGATA
1 CGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGATTTCGAGGATCGATA
* *
856248 CTTTTTACAAATGTATCGACACTTTAAGCGTACACCTCGTTT-TCCATTCATTTTGGAAAAATGT
66 CTTTTTA-AAATGTATCGACACTTTAAGCGTACAACTCGTTTGTCC-TTCATTTTGGAAAAAAGT
* * * ** * * *
856312 ATCGACACAAATTAAAAAAGTGTCGATACTTTATGTTGACTTATTCTCTCATGAACCCGGTATAT
129 ATAGACACAAATTAAAAAAGTGTCGATACATAATGTAAACCTATTCTCTAATGAACCCGATATAT
856377 TTCTAC
194 TTCTAC
* * * ** *
856383 CGGTTACATTGGAAATTTACCTATTACATTATAATTATTGGTCTCTTTGATTTTGA-GATCGATA
1 CGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGATTTCGAGGATCGATA
*
856447 CTTGTTATAAATGTATCGACAC
66 CTTTTTA-AAATGTATCGACAC
856469 AAAATCTAAT
Statistics
Matches: 239, Mismatches: 37, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
196 9 0.04
197 52 0.22
198 90 0.38
199 82 0.34
200 6 0.03
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (199 bp):
CGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGATTTCGAGGATCGATA
CTTTTTAAAATGTATCGACACTTTAAGCGTACAACTCGTTTGTCCTTCATTTTGGAAAAAAGTAT
AGACACAAATTAAAAAAGTGTCGATACATAATGTAAACCTATTCTCTAATGAACCCGATATATTT
CTAC
Found at i:860042 original size:198 final size:198
Alignment explanation
Indices: 859612--860636 Score: 1125
Period size: 200 Copynumber: 5.1 Consensus size: 198
859602 GTAATTTTAA
* * * * * * * * *
859612 AAAGTATCGATATAAATTTA-AAAGTGTCGATGCATTATGTAGACCTATTTTCTCATGAAACCGG
1 AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTTTTTTAAT--AACCGG
* * * * * * * *
859676 -AAAATTAAACCGATTACATTGTAAAGTGACCTATTACATTATAATTACGGGTTTCGATGTTTTT
64 TATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGGGTTTCGATGTTTTT
* * * * **
859740 AGGATCGACACTTTTTCTAAATGTATCGACACTTTTTCATGAACTTGTTTGGAAAATTTATTATG
129 GGGATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATACATTATG
859805 GACAT
194 GACAT
*
859810 AAAGTGTCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTTTTTTAATAACCGGTA
1 AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTTTTTTAATAACCGGTA
* * * * *
859875 TGTTTAGACCGGTTATATTTTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTTTTTTG
66 TATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGG
**
859940 GATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTATGGA
131 GATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATACATTATGGA
860005 CAT
196 CAT
* *
860008 AAAGTGTCGACACAAATGTATAAAGTATCGATACATTATGTAAACCTTTCTTTTTTAATAACCGG
1 AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACC-TT-TTTTTTAATAACCGG
* *
860073 TATATTTAGACCGGTTACATTGTTATGTTATCTATTACATTATAATTATGTGTTTCGATGTTTTT
64 TATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGGGTTTCGATGTTTTT
* * *
860138 GGGATCGACACTTGTTATAAATGTATCGACACTTTTTTGTGCACTTGGTTTGG-AAATACATTCT
129 GGGATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTT-GTTTGGAAAATACATTAT
*
860202 TG--AT
193 GGACAT
* * * *
860206 AACATGTATCGACACAAATGAATAAAGTGTCGATACA-TATTGTAGACCTATTTTCTCATAA-AA
1 AA-A-GTATCGACACAAATGTATAAAGTATCGATACATTA-TGTATACCT-TTTT-T-TTAATAA
* * * * * * * * * * *
860269 CTGATAAATTTAAACTGGTTACATTGTAAAGTGACCTATTACATTATAGTTACGGGTTTCAATGT
60 CCGGTATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGGGTTTCGATGT
* * *
860334 TTTTTGGATCGACACTTGATATAAATGTGTCGACACTTATTT-GTGAACTTGTTTTGGTTGGAAA
125 TTTTGGGATCGACACTTGTTATAAATGTATCGACACTT-TTTCGTGAACTTG---T--TTGGAAA
*
860398 ATACATTATGGACAC
184 ATACATTATGGACAT
* * * * * * *
860413 AAAGTATCGACACAAATCTATAAAGTGTCGATACTTTATGTATATCTCTTTTCTCATAAACCGGT
1 AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTTTTTTAAT-AACCGGT
* * *
860478 ATATTTAGACTGGTTACATTGTTATTTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTG
65 ATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTG
* * *
860543 GGATCGATACTTTTTATAAATGTATCGACACTTTGTTCGTGCACTTGGTTTGG-AAATACATTAT
130 GGATCGACACTTGTTATAAATGTATCGACACTTT-TTCGTGAACTT-GTTTGGAAAATACATTAT
860607 GGACA-
193 GGACAT
* * *
860612 ACATGTATCGACACGAATGAATAAA
1 A-AAGTATCGACACAAATGTATAAA
860637 ACAAATTCAT
Statistics
Matches: 707, Mismatches: 93, Indels: 52
0.83 0.11 0.06
Matches are distributed among these distances:
197 6 0.01
198 183 0.26
199 41 0.06
200 297 0.42
201 16 0.02
202 3 0.00
203 3 0.00
204 97 0.14
205 54 0.08
206 4 0.01
207 3 0.00
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (198 bp):
AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTTTTTTAATAACCGGTA
TATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGG
GATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATACATTATGGA
CAT
Found at i:862384 original size:3 final size:3
Alignment explanation
Indices: 862376--862419 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
862366 ACTTGTTTGG
* * * *
862376 ATC ATC ATC ATC ATC ATC ATC TTC ATT TTC ATC ATC ATC TTC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
862420 TGACCGCTTG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (3 bp):
ATC
Found at i:862407 original size:18 final size:18
Alignment explanation
Indices: 862386--862420 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
862376 ATCATCATCA
862386 TCATCATCATCTTCATTT
1 TCATCATCATCTTCATTT
862404 TCATCATCATCTTCATT
1 TCATCATCATCTTCATT
862421 GACCGCTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.49
Consensus pattern (18 bp):
TCATCATCATCTTCATTT
Found at i:863563 original size:15 final size:15
Alignment explanation
Indices: 863543--863595 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
863533 TGATTTCCTC
863543 AGAAGAGCTGGGTTG
1 AGAAGAGCTGGGTTG
* *
863558 AGAAGAGGTGAGTTG
1 AGAAGAGCTGGGTTG
*
863573 AGAAGAGATGGGTTG
1 AGAAGAGCTGGGTTG
863588 AGAAGAGC
1 AGAAGAGC
863596 CCCGATTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.34, C:0.04, G:0.45, T:0.17
Consensus pattern (15 bp):
AGAAGAGCTGGGTTG
Found at i:864236 original size:198 final size:198
Alignment explanation
Indices: 863987--864895 Score: 1412
Period size: 198 Copynumber: 4.6 Consensus size: 198
863977 TTACAAAATG
*
863987 ACCTATTACATTATAATTATGGGTCTCGATGTTTTTTGGATCGAAACTTTTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTCTCGATGTTTTTTGGATCGATACTTTTTATAAATGTATCGA
* * * *
864052 CACATTGTGGTGACCTTGGTAAGGAAATCATTCTGAATACAAAGTATCGACACAAATTCTAAAAG
66 CACATTATGGTGACCTTGGTAAGGAAATCATTCTGGACACAAAGTATCGACACAAATTCAAAAAG
* *
864117 TGTCGATACTTCATGTACACCTGTTTTCTCATAAACCAGTTTATTTAGACCGGTGAGATTGATAA
131 TGTCGATACTTCATGTACACCTGTTTTCTCATAAACCAGTGTATTTAGACCGGTTAGATTGATAA
864182 TTT
196 TTT
* *
864185 ACCTATTACATTATAATTATGAGTCTCGTTGTTTTTTGGATCGATACTTTTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTCTCGATGTTTTTTGGATCGATACTTTTTATAAATGTATCGA
* * *
864250 CACATTGTGGTGATCTTGGTAAGGAAATCATTCTGGACACAAAGTATCGACACAAATTCAAAACG
66 CACATTATGGTGACCTTGGTAAGGAAATCATTCTGGACACAAAGTATCGACACAAATTCAAAAAG
* *
864315 TGTCGATACTTCATGTACACCTGTTTTCTCATAAACCAGTGTATTTATACCGGTTACATTGCA-A
131 TGTCGATACTTCATGTACACCTGTTTTCTCATAAACCAGTGTATTTAGACCGGTTAGATTG-ATA
* *
864379 AATG
195 ATTT
* *
864383 ACCTATTACATTATAATTATGGGTCTCGATGTTTTTGGGATCGATACTTTTTATAAAGGTATCGA
1 ACCTATTACATTATAATTATGGGTCTCGATGTTTTTTGGATCGATACTTTTTATAAATGTATCGA
* *
864448 GACATTATGGTGACCTTGGTAAGGAAATCATTCTGGACACAAAGTATAGACACAAATTCAAAAAG
66 CACATTATGGTGACCTTGGTAAGGAAATCATTCTGGACACAAAGTATCGACACAAATTCAAAAAG
* *
864513 TGTCGATACTTCATGTACACCTGTTTTCTCATAAACCGGTGTATTTAGACCGGTTAAATTGATAA
131 TGTCGATACTTCATGTACACCTGTTTTCTCATAAACCAGTGTATTTAGACCGGTTAGATTGATAA
864578 TTT
196 TTT
* *
864581 ACCTATTACATTATAATTATGGGTCTCGATGTTTTTGGGATCGATACTTTTTATAAAGGTATCGA
1 ACCTATTACATTATAATTATGGGTCTCGATGTTTTTTGGATCGATACTTTTTATAAATGTATCGA
* *
864646 CATATTATGGTGACCTTGGTAAGGAAATCATTCTGGACACAAAGTATGGGATCAACACAAATT-A
66 CACATTATGGTGACCTTGGTAAGGAAATCATTCTGGACACAAAG--T---ATCGACACAAATTCA
* * *
864710 AACAAGTGTCGATACTTTATGTACACCTGTTTTCTCATAAACCGGTATATTTAGACCGGTTAGAT
126 AA-AAGTGTCGATACTTCATGTACACCTGTTTTCTCATAAACCAGTGTATTTAGACCGGTTAGAT
864775 TGATAATTT
190 TGATAATTT
*
864784 ACCTATTATATTATAATTATGGGTCTCGATGTTTTTTGGATCGATACTTTTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTCTCGATGTTTTTTGGATCGATACTTTTTATAAATGTATCGA
** *
864849 CACATT-TCCAT-ACACTTGGTAAGGAAATCATTTTGGACACAAAGTAT
66 CACATTAT-GGTGAC-CTTGGTAAGGAAATCATTCTGGACACAAAGTAT
864896 ACTTGGAATG
Statistics
Matches: 659, Mismatches: 42, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
197 1 0.00
198 473 0.72
199 1 0.00
200 1 0.00
201 1 0.00
202 6 0.01
203 176 0.27
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (198 bp):
ACCTATTACATTATAATTATGGGTCTCGATGTTTTTTGGATCGATACTTTTTATAAATGTATCGA
CACATTATGGTGACCTTGGTAAGGAAATCATTCTGGACACAAAGTATCGACACAAATTCAAAAAG
TGTCGATACTTCATGTACACCTGTTTTCTCATAAACCAGTGTATTTAGACCGGTTAGATTGATAA
TTT
Found at i:865080 original size:20 final size:20
Alignment explanation
Indices: 865037--865087 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
865027 TTACATTCAC
* *
865037 ATACAAAATT-ATAAATCGT
1 ATACAAAATTAAAAAAACGT
*
865056 ATACAAAATTAAAAAAACTT
1 ATACAAAATTAAAAAAACGT
865076 ATACAAAATTAA
1 ATACAAAATTAA
865088 CCCTACATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (20 bp):
ATACAAAATTAAAAAAACGT
Found at i:866258 original size:17 final size:17
Alignment explanation
Indices: 866236--866271 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
866226 GAATCATTAG
866236 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
866253 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
866270 GA
1 GA
866272 AATATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (17 bp):
GATTAATATCTTTTCAT
Found at i:867291 original size:22 final size:24
Alignment explanation
Indices: 867263--867318 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
867253 AACCTGCATT
867263 TATAATAAAAT-TA-ATCATTTTA
1 TATAATAAAATATACATCATTTTA
*
867285 TATAAT-AACTATACCATCATTTTA
1 TATAATAAAATATA-CATCATTTTA
*
867309 TATAAAAAAA
1 TATAATAAAA
867319 CAAAAACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 3 0.11
22 8 0.30
24 14 0.52
25 2 0.07
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (24 bp):
TATAATAAAATATACATCATTTTA
Found at i:869474 original size:182 final size:182
Alignment explanation
Indices: 869168--870535 Score: 2087
Period size: 182 Copynumber: 7.6 Consensus size: 182
869158 TATTAAAGTA
* * ** * *
869168 CGACACTTTCAACATAACCGGTAGCGCTTTACCGGTTTTGTCATTT-GATACC-GATTTTGTCAT
1 CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTG-TTTTGTCAT
* * * * *
869231 ATTTTTACCTATTATATTGTTATGGATCGATACCTTT-TCATAAAGTATCAACACTTTTTAGGCG
65 ATTATTACCTGTTATATTGCTATGGATCGATACATTTGT-ATAAAGTATCGACACTTTTTAGGCG
* *
869295 CTATAATTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTAT
129 CTATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
*
869349 CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTATCATA
1 CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
* *
869414 TTATTACCTGTTATATTTCTATGGATCGATACATTTGTATAAAATATCGACACTTTTTAGGCGCT
66 TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
*
869479 ATAACTTCTTCTCTTTTAAATATA-AAAAGTGTCGATAATTATATTAATTTAT
131 ATAACTTCTTCTCTTTTAAAT-TACAAAAGTGTCGATACTTATATTAATTTAT
*
869531 CGACACTTTCAATATATCCGGTAGCTTTTTACCGATTTTATCATTTCGAGACCTGTTTTGTCATA
1 CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
* *
869596 TTATTACCTGTTATATTGCTATGGATTGATACATTTGTATAAAGTATCGACACTTTTTACGCGCT
66 TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
869661 ATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAA--T-T
131 ATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
* * * *
869710 -GACACTTTCAATATATCCGGTATCTTTTTGCCGGTTTTATCATTTCGAGACATATTTTGTCATA
1 CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
*
869774 TTATTACCTGTTATATTACTATGGATCGATACATTTGT-TAAAGTATCGACACTTTTTAGGCGCT
66 TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
*
869838 ATAACTTCTTCTCTTTTAAATTACAAAAGCGTCGATACTTATATTAATTTAT
131 ATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
* *
869890 CGACACTTTCAATATAT-CGATATCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
1 CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
* * *
869954 TTATTACCTGTTATATTGATATGGATCGATACATTTGTATAAAGTATCGACACTTTTTACGCACT
66 TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
*
870019 ATAACTTCTTCTCTTTTAAATTACAAAAGTTTCGATACTTATATTAATTTAT
131 ATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
* * * *
870071 CGACACTTTCAATATATCCGGTATCTTTTTGCAGGTTTTATCATTTCGAGACATGTTTTGTCATA
1 CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
* *
870136 TTATTACCTGTTATATTGCTATGGATTGATACATTTGTATAAAGTATCGACACTTTGTAGGCGCT
66 TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
870201 ATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
131 ATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
* ** * * *
870253 CGACACTTTCAATATATCCAGTAGCGGTTTACCGGTTTTATCATAAT-GACACCGGTTTTGTCAT
1 CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCAT-TTCGAGACCTGTTTTGTCAT
* * *
870317 ATTATTACATGTTATATTTCTATGGATCGATACATTTGTATAAAGTATCGACACTTTATAGGCGC
65 ATTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGC
*
870382 TATAACTTCTTCTCTTTTAAATTACAAAAGTATCGATACTTATATTAATTTAT
130 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
* * * * * *
870435 CGACACTTTCAATATATCCGGTAG-TGGTTTACCGGTTTTATCATAAT-GACAACAGTTTTATCA
1 CGACACTTTCAATATATCCGGTAGCT-TTTTACCGGTTTTATCAT-TTCGAGACCTGTTTTGTCA
* *
870498 TATTTTTACCTGTTTTATTGCTATGGATCGATACATTT
64 TATTATTACCTGTTATATTGCTATGGATCGATACATTT
870536 TGCATTTGTA
Statistics
Matches: 1097, Mismatches: 77, Indels: 25
0.91 0.06 0.02
Matches are distributed among these distances:
177 71 0.06
178 95 0.09
179 2 0.00
180 81 0.07
181 150 0.14
182 693 0.63
183 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (182 bp):
CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
ATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
Found at i:875657 original size:40 final size:40
Alignment explanation
Indices: 875532--875641 Score: 193
Period size: 40 Copynumber: 2.8 Consensus size: 40
875522 ACCGTAGTGC
875532 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
* *
875572 TACACATAAGGTCGTGCCCACCATATACATCGAAATGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
875612 TACACATAAGGTCATGCCCACCATATACAC
1 TACACATAAGGTCGTGCCCACCATATACAC
875642 TTAGTTTCCT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:888241 original size:2 final size:2
Alignment explanation
Indices: 888234--888278 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
888224 TATTCTGAAT
888234 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
888276 TA T
1 TA T
888279 TAGATATCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:889575 original size:151 final size:150
Alignment explanation
Indices: 889364--889768 Score: 593
Period size: 151 Copynumber: 2.7 Consensus size: 150
889354 ATGTCTATCA
* * *
889364 AAATATGAGAAAGGTTTCTCAT-TCAAATTTGAAATTTTGAAATTTTTGAAAAGTAAGAAAGGTT
1 AAATATAAGAAAGGTTTCTCATATTAAATCTGAAA-TTT-AAATTTTTGAAAAGTAAGAAAGGTT
*
889428 TCTTACATAGTAAAATATTTCCAAAATTTATAAGTCCTTCGGGTCATCCATAAGACCTTCAGGCA
64 TCTTACCTAGTAAAATATTTCCAAAATTTATAAGTCCTTCGGGTCATCCATAAGACCTTCAGGCA
*
889493 -GTATGTTTTCATATATCTTTTG
129 TG-ATATTTTCATATATCTTTTG
* *
889515 AAATATAAGAAATGTTTATCATATTAAATCTGAAATTTAAATTTTTTGAAAAGTAAGAAAGGTTT
1 AAATATAAGAAAGGTTTCTCATATTAAATCTGAAATTTAAA-TTTTTGAAAAGTAAGAAAGGTTT
* * * *
889580 CTTACCTAGTAAAATATTTACAAATTTTATAAATCCTTCGGGTCATCCATAAGACCTTCAGGTAT
65 CTTACCTAGTAAAATATTTCCAAAATTTATAAGTCCTTCGGGTCATCCATAAGACCTTCAGGCAT
*
889645 GATATTTTCATATGTCTTTTG
130 GATATTTTCATATATCTTTTG
*
889666 AAATATGAA-AAAGGTTTCTCATATTAAATCTGAAATTGAAA-TTTTGAAAAGTAAGAAAGGTTT
1 AAATAT-AAGAAAGGTTTCTCATATTAAATCTGAAATTTAAATTTTTGAAAAGTAAGAAAGGTTT
* * *
889729 CTTACCCAGTAAACTATTTCTAAAATTTATAAGTCCTTCG
65 CTTACCTAGTAAAATATTTCCAAAATTTATAAGTCCTTCG
889769 TGCCATCAGT
Statistics
Matches: 229, Mismatches: 21, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
149 56 0.24
150 3 0.01
151 157 0.69
152 13 0.06
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (150 bp):
AAATATAAGAAAGGTTTCTCATATTAAATCTGAAATTTAAATTTTTGAAAAGTAAGAAAGGTTTC
TTACCTAGTAAAATATTTCCAAAATTTATAAGTCCTTCGGGTCATCCATAAGACCTTCAGGCATG
ATATTTTCATATATCTTTTG
Found at i:890111 original size:115 final size:115
Alignment explanation
Indices: 889908--890314 Score: 532
Period size: 115 Copynumber: 3.5 Consensus size: 115
889898 ATTTTGAAAA
* * * * * * *
889908 ATCTGATATTCCCTTCAGAAGAAGCGGAACAGATCCCTCTTTTCCAAGGTTTGATATTCCCTTAG
1 ATCTGATATTCCCTTCAGAAGAAGCGAAACAGATTCATATCTTCCAAGATTTGATATTCCCTGAG
* * * * *
889973 TGACAGCTGAACAAATCTGCCCTAATTCAATAGATCATATCTCTTTCTAG
66 TGAAAGCAGAACAAATCTTCCCTAATTCAATGGATCATATCTCTTTCCAG
* * *
890023 ATCTGATATTCCCTTCAGAATAAGTGAAACAGATTCATATCTTCCAAGGTTTGATATTCCCTGAG
1 ATCTGATATTCCCTTCAGAAGAAGCGAAACAGATTCATATCTTCCAAGATTTGATATTCCCTGAG
* *
890088 TGAAAGCGGAACAAATCTTCCCTAATTCAATGGATCACATCTCTTTCCAG
66 TGAAAGCAGAACAAATCTTCCCTAATTCAATGGATCATATCTCTTTCCAG
*
890138 ATCTGATATTCCCTTCAGAAGAAGC-ATAACAGATTTC-TATCTTCCAAGATTTCATATTCCCTG
1 ATCTGATATTCCCTTCAGAAGAAGCGA-AACAGA-TTCATATCTTCCAAGATTTGATATTCCCTG
* * * *
890201 AGTGACAA-TAGAACAAATATTCTCTAATTCAATGGATCATGTCTCTTTCCAG
64 AGTGA-AAGCAGAACAAATCTTCCCTAATTCAATGGATCATATCTCTTTCCAG
* * * *
890253 ATCTGATATTCCCTTCAGAAGAAGCGGAACATATTTATATCTTCTAAGATTTGATATTCCCT
1 ATCTGATATTCCCTTCAGAAGAAGCGAAACAGATTCATATCTTCCAAGATTTGATATTCCCT
890315 TCAGAGACAA
Statistics
Matches: 258, Mismatches: 29, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
114 3 0.01
115 250 0.97
116 5 0.02
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (115 bp):
ATCTGATATTCCCTTCAGAAGAAGCGAAACAGATTCATATCTTCCAAGATTTGATATTCCCTGAG
TGAAAGCAGAACAAATCTTCCCTAATTCAATGGATCATATCTCTTTCCAG
Found at i:892569 original size:31 final size:33
Alignment explanation
Indices: 892506--892579 Score: 98
Period size: 31 Copynumber: 2.3 Consensus size: 33
892496 AATCTTAAAA
*
892506 TTTTAAAAAATTTAGAAGTTTAAATTAAATTTT
1 TTTTAAAAAATTAAGAAGTTTAAATTAAATTTT
* *
892539 TTTTAAAAAA-TAAGAA-TTTAATTTACATTTT
1 TTTTAAAAAATTAAGAAGTTTAAATTAAATTTT
*
892570 TTGTAAAAAA
1 TTTTAAAAAA
892580 GAATGGGTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
31 22 0.59
32 5 0.14
33 10 0.27
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.46
Consensus pattern (33 bp):
TTTTAAAAAATTAAGAAGTTTAAATTAAATTTT
Found at i:894205 original size:6 final size:6
Alignment explanation
Indices: 894195--894226 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
894185 AATATTTGAT
*
894195 CACATT CACATG CACATG CACATG CACATG CA
1 CACATG CACATG CACATG CACATG CACATG CA
894227 GCAGTTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.34, C:0.34, G:0.12, T:0.19
Consensus pattern (6 bp):
CACATG
Found at i:894680 original size:20 final size:20
Alignment explanation
Indices: 894651--894689 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
894641 CCTCAAACTC
*
894651 CAATGGAATAAAGAAAGAAA
1 CAATGAAATAAAGAAAGAAA
894671 CAATGAAATAAAGAAAGAA
1 CAATGAAATAAAGAAAGAA
894690 GCATTCTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.67, C:0.05, G:0.18, T:0.10
Consensus pattern (20 bp):
CAATGAAATAAAGAAAGAAA
Found at i:898616 original size:48 final size:48
Alignment explanation
Indices: 898526--898624 Score: 126
Period size: 48 Copynumber: 2.1 Consensus size: 48
898516 CTCAAATTTA
* * * *
898526 TTTATTTTTGCAAAAAGTATGCGAACTAGAGATCATGTGGTTAGGTTT
1 TTTATTTTCGCAAAAAGCATGCGAACTAGAGACCATGCGGTTAGGTTT
* * * *
898574 TTTATTTTCGCACAAAGCATGTGAATTAGATACCATGCGGTTAGGTTT
1 TTTATTTTCGCAAAAAGCATGCGAACTAGAGACCATGCGGTTAGGTTT
898622 TTT
1 TTT
898625 GTGAATGACA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.40
Consensus pattern (48 bp):
TTTATTTTCGCAAAAAGCATGCGAACTAGAGACCATGCGGTTAGGTTT
Found at i:905531 original size:41 final size:42
Alignment explanation
Indices: 905435--905557 Score: 117
Period size: 42 Copynumber: 3.0 Consensus size: 42
905425 TCACGATTTG
* * * * * *
905435 TAAGTCCTTCGGGCCA-TCAGTAAGTCTTTCGAGCATGATGCT
1 TAAGTCCTTCGGGTCATTC-GTAAGCCTTTAGAGTAGGATGCA
*
905477 TAAATCCTTCGGGTCATTCGTAAGCCTTTAGAGTAGGATG-A
1 TAAGTCCTTCGGGTCATTCGTAAGCCTTTAGAGTAGGATGCA
* * *
905518 TAAGTCCTTCGGGTCATCCATAAGACCTTCAG-GTAGGATG
1 TAAGTCCTTCGGGTCATTCGTAAG-CCTTTAGAGTAGGATG
905558 TTTTCAAATG
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 29 0.43
42 37 0.54
43 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (42 bp):
TAAGTCCTTCGGGTCATTCGTAAGCCTTTAGAGTAGGATGCA
Found at i:905752 original size:41 final size:42
Alignment explanation
Indices: 905649--905760 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 42
905639 TCATGATTTG
* * *
905649 TAAGTCCTTCGGGCCAT-CAGTAAGCCTTTCGAGCATGATGCT
1 TAAGTCCTTCGGGCCATCCA-TAAGCCTTTAGAGCAAGATGCA
* * *
905691 TAAATTCTTCGGGTCATCCATAAGCCTTTAGAGCAAGATG-A
1 TAAGTCCTTCGGGCCATCCATAAGCCTTTAGAGCAAGATGCA
*
905732 TAAGCCCTTCGGGCCATCCATAAGACCTT
1 TAAGTCCTTCGGGCCATCCATAAG-CCTT
905761 CGGGTAGGAT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
41 20 0.34
42 36 0.62
43 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (42 bp):
TAAGTCCTTCGGGCCATCCATAAGCCTTTAGAGCAAGATGCA
Found at i:905939 original size:42 final size:41
Alignment explanation
Indices: 905862--905963 Score: 114
Period size: 42 Copynumber: 2.5 Consensus size: 41
905852 TTCATAATTT
* * * *
905862 ATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATG
1 ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG
* * **
905903 CTTAAATCCTTCGGGTCATCTTTAAGCCTTTAGAGCAAGATG
1 -ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG
*
905945 ATAAGTCCTTCGGGCCATC
1 ATAAATCCTTCGGGCCATC
905964 CATAAAACCT
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 16 0.33
42 33 0.67
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.30
Consensus pattern (41 bp):
ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG
Found at i:906359 original size:42 final size:40
Alignment explanation
Indices: 906293--906405 Score: 100
Period size: 42 Copynumber: 2.7 Consensus size: 40
906283 TTCACGATTT
* * * * *
906293 ATAAGTCCTTCGGGCAATCAGTAAGTCTTTCGAGCATGATG
1 ATAAATCCTTCGGGC-ATCCGTAAGCCTTTAGAGCAGGATG
* *
906334 CTTAAATCCTTCGGGTCATCCGTAAGCCTTTAGAGTAGGATG
1 -ATAAATCCTTCGGG-CATCCGTAAGCCTTTAGAGCAGGATG
* *
906376 ATAAGTCCTTCGGGCCATCCATAAGACCTT
1 ATAAATCCTTCGGG-CATCCGTAAG-CCTT
906406 CGGGTAGGAT
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
41 21 0.36
42 36 0.62
43 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (40 bp):
ATAAATCCTTCGGGCATCCGTAAGCCTTTAGAGCAGGATG
Found at i:906593 original size:215 final size:215
Alignment explanation
Indices: 905326--907670 Score: 3585
Period size: 214 Copynumber: 10.9 Consensus size: 215
905316 GTGAAGCAAA
*
905326 CCATCCATAAAACCTTCAGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAATGATG---T-
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAATGATGTTTTA
* * *
905387 ------TGGAATTTTTTAAAACGAAGAATGCGATTTTCAAAATTTCACGATTTGTAAGTCCTTCG
66 AGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTCG
905446 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCAT-TCGTAAGCCTTTAGAG
131 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCT-GTAAGCCTTTAGAG
* *
905510 TAGGATGATAAGTCCTTCGGG
195 CAAGATGATAAGTCCTTCGGG
* * * *
905531 TCATCCATAAGACCTTCAGGTAGGATGTTTTCA-AATGAATTTAAAAATG-AAAAATGATGTTTT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAA-GAATTTGAAAATGAAAAAATGATGTTTT
* ** *
905594 AAGAAGATGGAATTTTTGAAAACAAAGAATGCGATTTTCAAAATTTCATGATTTGTAAGTCCTTC
65 AAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTC
* * **
905659 GGGCCATCAGTAAGCCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCCATAAGCCTTTAGAG
130 GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAG
*
905724 CAAGATGATAAGCCCTTCGGG
195 CAAGATGATAAGTCCTTCGGG
* **
905745 CCATCCATAAGACCTTCGGGTAGGATGTTTTCACATTAATTTGAAAATG-AAAAATGATGTTTTA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAATGATGTTTTA
*
905809 AGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCATAATTTATAAGTCCTTCG
66 AGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTCG
*
905874 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTTTAAGCCTTTAGAGC
131 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
905939 AAGATGATAAGTCCTTCGGG
196 AAGATGATAAGTCCTTCGGG
**
905959 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATTAATTTGAAAATG-AAAAATGATGTTTTA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAATGATGTTTTA
* * * * * * *
906023 AGAAGATGAAAATTTTGAAAACAAAGAATGGGTTTTTCAAAATTTCACGATTTGTAAGTCCTTCG
66 AGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTCG
* *
906088 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCCGTAAGCCTTTAGAGT
131 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
*
906153 AGGATGATAAGTCCTTCGGG
196 AAGATGATAAGTCCTTCGGG
* *
906173 CCGTCCATAAGACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAAAATGATGTTT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATG--AAAAAATGATGTTT
* * *
906238 TAAGAAGATGAAATTTTTGAAAACAAAGAATGCGATTTTCAAAATTTCACGATTTATAAGTCCTT
64 TAAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTT
* *
906303 CGGGCAATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCCGTAAGCCTTTAGA
129 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGA
* *
906368 GTAGGATGATAAGTCCTTCGGG
194 GCAAGATGATAAGTCCTTCGGG
*
906390 CCATCCATAAGACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAATGATGTTTTA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAATGATGTTTTA
* * * * *
906455 AGAAGATGAAATTTTTGAAAACAAAGAATGCGGTTTTCAAAATTTCACAATTTATAAGTTCTTTG
66 AGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTCG
906520 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
131 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
*
906585 AAGATGATAAGCCCTTCGGG
196 AAGATGATAAGTCCTTCGGG
* *
906605 CCATCTATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAATGATGTTTTA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAATGATGTTTTA
* *
906670 AAAAGATGGAATTTTTGGAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTCG
66 AGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTCG
906735 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
131 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
*
906800 AAGATGATAAGCCCTTCGGG
196 AAGATGATAAGTCCTTCGGG
* * * *
906820 CTATCCATAAGACCTTGGGCTATCCATAAGACCTTCAGGTAGGACGTTTTCACATGAATTTGGAA
1 ----CCAT-----C-----C-AT--A-AA-ACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAA
*
906885 ATGAAAAAATGATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAGTGCGATTTTCAAAATTTC
47 ATGAAAAAATGATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTC
*
906950 ACAATTTATAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTC
112 ACAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTC
*
907015 ATCTGTAAGCCGTTAGAGCAAGATGATAAGTCCTTCGGG
177 ATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGG
* * *
907054 CCATCCATAAAACCTTCGGGTAGGATATTTTCA-AATGAATTTGAAAATG-GAAAATGATGTCTT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAA-GAATTTGAAAATGAAAAAATGATGTTTT
907117 AAG-AGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTC
65 AAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTC
*
907181 GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAAAG
130 GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAG
907246 CAAGATGATAAGTCCTTCGGG
195 CAAGATGATAAGTCCTTCGGG
* * *
907267 TCATCCATAAAACCTTCGGGTAGGATTTTTTCACATGAATTTGAAAATGAAAAAAATGATGTTTT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATG-AAAAAATGATGTTTT
* *
907332 AAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATATGTCCTTC
65 AAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTC
* *
907397 GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTTATCTGTGAGCCTTTAGAG
130 GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAG
907462 CAAGATGATAAGTCCTTCGGG
195 CAAGATGATAAGTCCTTCGGG
907483 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATG-AAAAATGATGTTTTA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAATGATGTTTTA
** *
907547 AGAAGATGGAATTTTTGAAAACGAAGAATATGCTTTTCAAAATTTCACAATTTATAAGTCCTTCG
66 AGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTCG
* * * * *
907612 GGCCATCAGTAAGTCTTTCGAGCATGGTGTTTAAATCCTTCGGGTAATTTTTAAGCCTT
131 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTT
907671 CAGAAGAGAA
Statistics
Matches: 1987, Mismatches: 113, Indels: 71
0.92 0.05 0.03
Matches are distributed among these distances:
204 12 0.01
205 43 0.02
207 1 0.00
213 187 0.09
214 723 0.36
215 409 0.21
216 190 0.10
217 209 0.11
219 6 0.00
220 1 0.00
224 1 0.00
225 1 0.00
230 6 0.00
232 1 0.00
233 2 0.00
234 195 0.10
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (215 bp):
CCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATGAAAAAATGATGTTTTA
AGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTCG
GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
AAGATGATAAGTCCTTCGGG
Found at i:906610 original size:41 final size:42
Alignment explanation
Indices: 906519--906610 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
906509 TAAGTTCTTT
* * * * * *
906519 GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTC
1 GGGCCATCTGTAAGCCTTTAGAGCAAGATGCATAAACCCTTC
* *
906561 GGGTCATCTGTAAGCCTTTAGAGCAAGATG-ATAAGCCCTTC
1 GGGCCATCTGTAAGCCTTTAGAGCAAGATGCATAAACCCTTC
906602 GGGCCATCT
1 GGGCCATCT
906611 ATAAAACCTT
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 16 0.39
42 25 0.61
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (42 bp):
GGGCCATCTGTAAGCCTTTAGAGCAAGATGCATAAACCCTTC
Found at i:906841 original size:19 final size:20
Alignment explanation
Indices: 906806--906855 Score: 84
Period size: 19 Copynumber: 2.5 Consensus size: 20
906796 GAGCAAGATG
*
906806 ATAAGCCCTTCGGGCTATCC
1 ATAAGACCTTCGGGCTATCC
906826 ATAAGACCTT-GGGCTATCC
1 ATAAGACCTTCGGGCTATCC
906845 ATAAGACCTTC
1 ATAAGACCTTC
906856 AGGTAGGACG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 19 0.68
20 9 0.32
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (20 bp):
ATAAGACCTTCGGGCTATCC
Found at i:907023 original size:42 final size:41
Alignment explanation
Indices: 906957--907058 Score: 105
Period size: 42 Copynumber: 2.5 Consensus size: 41
906947 TTCACAATTT
* * * * * *
906957 ATAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATG
1 ATAAATCCTTCGGGCCATCAGTAAGCCGTTAGAGCAAGATG
* * *
906998 CTTAAATCCTTCGGGTCATCTGTAAGCCGTTAGAGCAAGATG
1 -ATAAATCCTTCGGGCCATCAGTAAGCCGTTAGAGCAAGATG
*
907040 ATAAGTCCTTCGGGCCATC
1 ATAAATCCTTCGGGCCATC
907059 CATAAAACCT
Statistics
Matches: 48, Mismatches: 12, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
41 16 0.33
42 32 0.67
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (41 bp):
ATAAATCCTTCGGGCCATCAGTAAGCCGTTAGAGCAAGATG
Found at i:907033 original size:234 final size:215
Alignment explanation
Indices: 906826--907670 Score: 1392
Period size: 213 Copynumber: 3.9 Consensus size: 215
906816 CGGGCTATCC
* * * * * *
906826 ATAAGACCTT-GGGCTATCCATAAGACCTTCAGGTAGGACGTTTTCACATGAATTTGGAAATGAA
1 ATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAA
*
906890 AAAATGATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAGTGCGATTTTCAAAATTTCACAAT
66 AAAATGATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAAT
*
906955 TTATAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
131 TTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
*
907020 TAAGCCGTTAGAGCAAGATG
196 TAAGCCTTTAGAGCAAGATG
* * *
907040 ATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATATTTTCAAATGAATTTGAAAATG-G
1 ATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAA
*
907104 AAAATGATGTCTTAAG-AGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAAT
66 AAAATGATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAAT
907168 TTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
131 TTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
*
907233 TAAGCCTTTAAAGCAAGATG
196 TAAGCCTTTAGAGCAAGATG
* *
907253 ATAAGTCCTTCGGGTCATCCATAAAACCTTCGGGTAGGATTTTTTCACATGAATTTGAAAATGAA
1 ATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATG-A
*
907318 AAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAA
65 AAAAATGATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAA
* *
907383 TTTATATGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTTATCT
130 TTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCT
*
907448 GTGAGCCTTTAGAGCAAGATG
195 GTAAGCCTTTAGAGCAAGATG
*
907469 ATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACAAGAATTTGAAAATG-A
1 ATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAA
** *
907533 AAAATGATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAATATGCTTTTCAAAATTTCACAAT
66 AAAATGATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAAT
* * * * *
907598 TTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGGTGTTTAAATCCTTCGGGTAATTTT
131 TTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
907663 TAAGCCTT
196 TAAGCCTT
907671 CAGAAGAGAA
Statistics
Matches: 589, Mismatches: 38, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
213 189 0.32
214 152 0.26
215 60 0.10
216 188 0.32
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32
Consensus pattern (215 bp):
ATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAA
AAAATGATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAAT
TTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
TAAGCCTTTAGAGCAAGATG
Found at i:907267 original size:41 final size:42
Alignment explanation
Indices: 907170--907271 Score: 125
Period size: 42 Copynumber: 2.5 Consensus size: 42
907160 TTCACAATTT
* * ** *
907170 ATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
1 ATAAGTCCTTCGGGTCATCAGTAAGCCTTTAAAGCAAGATGC
* * *
907212 TTAAATCCTTCGGGTCATCTGTAAGCCTTTAAAGCAAGATG-
1 ATAAGTCCTTCGGGTCATCAGTAAGCCTTTAAAGCAAGATGC
907253 ATAAGTCCTTCGGGTCATC
1 ATAAGTCCTTCGGGTCATC
907272 CATAAAACCT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 17 0.34
42 33 0.66
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (42 bp):
ATAAGTCCTTCGGGTCATCAGTAAGCCTTTAAAGCAAGATGC
Found at i:911349 original size:32 final size:30
Alignment explanation
Indices: 911282--911339 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
911272 TAACTAATCA
* *
911282 TAAAAAATGAGGGGATAAAGCATAATTAACC
1 TAAAAAATGAGGGAATAAA-CATAATAAACC
911313 TAAAAAATGAGGGAATAAA-ATAATAAA
1 TAAAAAATGAGGGAATAAACATAATAAA
911340 TCAACTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 7 0.28
31 18 0.72
ACGTcount: A:0.59, C:0.05, G:0.17, T:0.19
Consensus pattern (30 bp):
TAAAAAATGAGGGAATAAACATAATAAACC
Found at i:912553 original size:13 final size:12
Alignment explanation
Indices: 912535--912584 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
912525 TTATATAATC
912535 TAAAAATAAAATT
1 TAAAAATAAAA-T
*
912548 TAAAAATACAA-
1 TAAAAATAAAAT
912559 -AAAAATAAAAT
1 TAAAAATAAAAT
*
912570 AAAATAATAAAAT
1 TAAA-AATAAAAT
912583 TA
1 TA
912585 CAACTAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
10 9 0.29
12 3 0.10
13 19 0.61
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (12 bp):
TAAAAATAAAAT
Found at i:920867 original size:20 final size:19
Alignment explanation
Indices: 920844--920890 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
920834 CGATATACCA
920844 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
920864 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
920884 GGTAAAA
1 GGTAAAA
920891 CGTTACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:921047 original size:20 final size:18
Alignment explanation
Indices: 921024--921070 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 18
921014 CGATATAACA
921024 GGTAAAAATATGATAAAACC
1 GGTAAAAATA--ATAAAACC
921044 GGTATCAAAATAATAAAACC
1 GGTA--AAAATAATAAAACC
921064 GGTAAAA
1 GGTAAAA
921071 CGATACCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
20 16 0.64
22 6 0.24
ACGTcount: A:0.55, C:0.11, G:0.15, T:0.19
Consensus pattern (18 bp):
GGTAAAAATAATAAAACC
Found at i:921051 original size:180 final size:182
Alignment explanation
Indices: 920632--921103 Score: 700
Period size: 180 Copynumber: 2.6 Consensus size: 182
920622 GATCCAAATT
* * * * **
920632 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATTGAAATGATA
1 AAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * *
920697 AAACCGGTAAAGCGCTACTGGATACATTTAAAGTGTC-AGTACTTTAATATAAGGATCGACACTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGA-TACTTTAATATAAGGATCGACACTT
*
920761 CGTGAATTTAAAAGAGAAGCAATTTTAAATCCTATAAAGTGTCGATACTTTTA
130 CGTGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTTA
*
920814 AAAAATGTATCGATCC-CAAACGATATACCAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
1 AAAAATGTATCGATCCAC-AACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
*
920878 AAAACCGGTAAAACGTTACCGGATATATTAAAAGTGTCGATACTTT-ATATAAGGATCGACACTT
65 AAAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* * ** *
920942 TGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATAC-TTTA
130 CGTGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTTA
* *
920994 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATAATA
1 AAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
*
921059 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTT
921104 CGTAAGTACG
Statistics
Matches: 264, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
180 107 0.41
181 61 0.23
182 95 0.36
183 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (182 bp):
AAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
GTGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTTA
Found at i:923256 original size:21 final size:21
Alignment explanation
Indices: 923230--923294 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
923220 AAGACAATCA
*
923230 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
*
923251 AGAGTCGAAGAGAAACTTTAG
1 AGAGTCGAAGAGAAACTTGAG
* *
923272 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
923293 AG
1 AG
923295 GCATAAGGGG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.42, C:0.11, G:0.29, T:0.18
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:923370 original size:33 final size:33
Alignment explanation
Indices: 923328--923393 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
923318 AAATAGATGG
*
923328 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
*
923361 AGTGGTGAAAGAAGTTGAGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
923394 TATTAAGATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.00, G:0.47, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:924598 original size:4 final size:4
Alignment explanation
Indices: 924589--924613 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
924579 TAAGAGATTG
924589 GTAT GTAT GTAT GTAT GTAT GTAT G
1 GTAT GTAT GTAT GTAT GTAT GTAT G
924614 AAAGGACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (4 bp):
GTAT
Found at i:925217 original size:19 final size:19
Alignment explanation
Indices: 925193--925241 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
925183 AATGTATGGT
925193 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
925212 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
925231 TAATTTTGTAT
1 TAATTTTGTAT
925242 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:926026 original size:181 final size:179
Alignment explanation
Indices: 925518--926069 Score: 960
Period size: 179 Copynumber: 3.1 Consensus size: 179
925508 CCATATATAA
*
925518 AAAGTGTCGATCCCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAA
1 AAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAA
*
925583 TCAGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTT
66 CCAGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTT
* *
925648 TGTGTCGATATTTTTGGTCCATAATGAATGGCAAACAGGGTGCAATAAT
131 TGTGTCGATATTTTTGGTCCAAAATGAATGGCAAACAGGGTGCAACAAT
** *
925697 AAAGTGTCGATCTGATAAACATCGAAACCCATAAGTATAATGTAATAGGTGATTTTTCAATCTAA
1 AAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAA
*
925762 CCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTT
66 CCAGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTT
*
925827 TGTGTCGATATTTTTGGTCCAGAATGAATGGCAAACAGGGTGCAACAAT
131 TGTGTCGATATTTTTGGTCCAAAATGAATGGCAAACAGGGTGCAACAAT
925876 AAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTTTCAATCT
1 AAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAA--TTTTTCAATCT
* * *
925941 AACCAGTACAAGTATATCGGTTTTATGAGAGAATAGGTATAAATAATGTGTCGACACTTTTGTAG
64 AACCAGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAG
* *
926006 TTTGTGTTGATATTTTTGGTCCAAAATGAATGGCAAACAGGGTGCAACCAT
129 TTTGTGTCGATATTTTTGGTCCAAAATGAATGGCAAACAGGGTGCAACAAT
926057 AAAGTGTCGATCC
1 AAAGTGTCGATCC
926070 ATATATAAAA
Statistics
Matches: 353, Mismatches: 18, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
179 220 0.62
181 133 0.38
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (179 bp):
AAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAA
CCAGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTT
TGTGTCGATATTTTTGGTCCAAAATGAATGGCAAACAGGGTGCAACAAT
Found at i:928867 original size:23 final size:23
Alignment explanation
Indices: 928838--928885 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
928828 AAATAGGTCA
*
928838 ATATAAGCGCTACCTATTATATT
1 ATATAAGCGCTACCTAATATATT
*
928861 ATATAAGCGCTACCTAATATGTT
1 ATATAAGCGCTACCTAATATATT
928884 AT
1 AT
928886 TGTACTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (23 bp):
ATATAAGCGCTACCTAATATATT
Found at i:928936 original size:87 final size:87
Alignment explanation
Indices: 928838--929091 Score: 438
Period size: 87 Copynumber: 2.9 Consensus size: 87
928828 AAATAGGTCA
* * *
928838 ATATAAGCGCTACCTATTATATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
*
928903 CCCGTTAAATACCTATTTTATT
66 CCCGTTAAATACATATTTTATT
928925 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
928990 CCCGTTAAATACATATTTTATT
66 CCCGTTAAATACATATTTTATT
*
929012 ATATAAGCGCAATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
**
929077 CTGGTTAAATA-ATAT
66 CCCGTTAAATACATAT
929092 AACATAACCG
Statistics
Matches: 160, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
86 4 0.03
87 156 0.98
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.43
Consensus pattern (87 bp):
ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
CCCGTTAAATACATATTTTATT
Found at i:928972 original size:23 final size:23
Alignment explanation
Indices: 928922--928966 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
928912 TACCTATTTT
* *
928922 ATTATATAAGCGCTATCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
928945 ATTATATAAGCGTTACCTAATA
1 ATTATATAAGCGCTACCTAATA
928967 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:930802 original size:91 final size:92
Alignment explanation
Indices: 930639--930810 Score: 292
Period size: 91 Copynumber: 1.9 Consensus size: 92
930629 CGAGTGATAG
* *
930639 GTTGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTTGGATGAGTTCTTCTCATTATGA
1 GTTGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTTGGACGAGTTCGTCTCATTATGA
930704 ACTCTCCATTGGAAATGTTAATGCGGA
66 ACTCTCCATTGGAAATGTTAATGCGGA
* * *
930731 GTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCT-TGTTGGACGAGTTCGTCTCATTATGA
1 GTTGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTTGGACGAGTTCGTCTCATTATGA
930795 ACTCTCCATTGGAAAT
66 ACTCTCCATTGGAAAT
930811 ATTGATCCAT
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 40 0.53
92 35 0.47
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.40
Consensus pattern (92 bp):
GTTGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTTGGACGAGTTCGTCTCATTATGA
ACTCTCCATTGGAAATGTTAATGCGGA
Found at i:931512 original size:37 final size:37
Alignment explanation
Indices: 931409--931517 Score: 116
Period size: 37 Copynumber: 3.0 Consensus size: 37
931399 ATTCAATTTC
** * *
931409 TTGTTTCAAGAGAAGGCTGTCTCAAGCGAGAC-GAAT
1 TTGTTTCAAGAGAAACCTGTCTCAAGGGAGACAAAAT
* * *
931445 TTGGTTTTAAGAGAAACC-ATCTTAAGGGAGACAAAACT
1 TT-GTTTCAAGAGAAACCTGTCTCAAGGGAGACAAAA-T
931483 TTGTTTCAAGA-AAACCTGTCTCAAGGGAGACAAAA
1 TTGTTTCAAGAGAAACCTGTCTCAAGGGAGACAAAA
931518 AAATTTCAAG
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
36 18 0.31
37 38 0.64
38 3 0.05
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
TTGTTTCAAGAGAAACCTGTCTCAAGGGAGACAAAAT
Found at i:931595 original size:20 final size:21
Alignment explanation
Indices: 931570--931616 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
931560 AAACTATCTA
931570 AAGGGACACAAAATTT-TTTC
1 AAGGGACACAAAATTTGTTTC
* *
931590 AAGGGATATAAAATTTGTTTC
1 AAGGGACACAAAATTTGTTTC
931611 AAGGGA
1 AAGGGA
931617 AACTGTCTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (21 bp):
AAGGGACACAAAATTTGTTTC
Found at i:931693 original size:38 final size:38
Alignment explanation
Indices: 931599--931730 Score: 129
Period size: 39 Copynumber: 3.4 Consensus size: 38
931589 CAAGGGATAT
*
931599 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 AAAATTTGTTTCGAGGGAAACTGTCTCAAGAGAGACAA
**** * *
931637 TTTTTTTTGTTTCGAGGGAAATTGTCTCAAGAGAGAGAA
1 -AAAATTTGTTTCGAGGGAAACTGTCTCAAGAGAGACAA
* * * *
931676 AAAATTTGTTTTGAGGGAAACTATCTCAAGCGAGATAA
1 AAAATTTGTTTCGAGGGAAACTGTCTCAAGAGAGACAA
**
931714 AATCTTTTGTTTCGAGG
1 AA-AATTTGTTTCGAGG
931731 AAAAACAATC
Statistics
Matches: 73, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
38 31 0.42
39 42 0.58
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.33
Consensus pattern (38 bp):
AAAATTTGTTTCGAGGGAAACTGTCTCAAGAGAGACAA
Found at i:931744 original size:40 final size:40
Alignment explanation
Indices: 931704--932039 Score: 512
Period size: 40 Copynumber: 8.4 Consensus size: 40
931694 AACTATCTCA
* * **
931704 AGCGAGATAAAATCTTTTGTTTCGAGGAAAAACAATCTCA
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
* * * **
931744 AGCGAGATAAAATATTCTATTTCGAGGAAAAACAATCTCA
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
*
931784 AGCAAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
*
931824 AGTGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
931864 AGCGAGATAAAATCTTCTGTTTCAAGG-AAAACAATCTTG
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
*
931903 AGCGAGATAAAATCTTCGGTTTCAAGGAAAAACAATCTTG
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
* *
931943 AACGAGATAAAATCTTATGTTTCAAGGAAAAACAATCTTG
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
* *
931983 AGTGAGATAAAATCTTCTATTTCAAGGAAAAACAATCTTG
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
*
932023 AGTGAGATAAAATCTTC
1 AGCGAGATAAAATCTTC
932040 CGTATTAAAT
Statistics
Matches: 275, Mismatches: 20, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
39 38 0.14
40 237 0.86
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (40 bp):
AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTG
Found at i:931749 original size:20 final size:20
Alignment explanation
Indices: 931726--931786 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
931716 TCTTTTGTTT
931726 CGAGGAAAAACAATCTCAAG
1 CGAGGAAAAACAATCTCAAG
* * **
931746 CGA-GATAAAATATTCT-ATTT
1 CGAGGA-AAAACAATCTCA-AG
931766 CGAGGAAAAACAATCTCAAG
1 CGAGGAAAAACAATCTCAAG
931786 C
1 C
931787 AAGATAAAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
19 3 0.10
20 23 0.79
21 3 0.10
ACGTcount: A:0.46, C:0.18, G:0.16, T:0.20
Consensus pattern (20 bp):
CGAGGAAAAACAATCTCAAG
Found at i:931860 original size:23 final size:23
Alignment explanation
Indices: 931794--931862 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 23
931784 AGCAAGATAA
931794 AATCTTCTGTTTCAAGGAAAAAC
1 AATCTTCTGTTTCAAGGAAAAAC
** * *
931817 AATC-T-TGAGT-GA-G-ATAA-
1 AATCTTCTGTTTCAAGGAAAAAC
931834 AATCTTCTGTTTCAAGGAAAAAC
1 AATCTTCTGTTTCAAGGAAAAAC
931857 AATCTT
1 AATCTT
931863 GAGCGAGATA
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
17 4 0.12
18 4 0.12
19 4 0.12
20 2 0.06
21 4 0.12
22 4 0.12
23 10 0.31
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (23 bp):
AATCTTCTGTTTCAAGGAAAAAC
Found at i:931910 original size:159 final size:160
Alignment explanation
Indices: 931704--932039 Score: 532
Period size: 159 Copynumber: 2.1 Consensus size: 160
931694 AACTATCTCA
* * * *
931704 AGCGAGATAAAATCTTTTGTTTCGAGGAAAAACAATCTCAAGCGAGATAAAATATTCTATTTCGA
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTCAAGCGAGATAAAATATTCGATTTCAA
*
931769 GGAAAAACAATC-TCAAGCAAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGTGAGATA
66 GGAAAAACAATCTTCAA-CAAGATAAAATCTTATGTTTCAAGGAAAAACAATCTTGAGTGAGATA
*
931833 AAATCTTCTGTTTCAAGGAAAAACAATCTTG
130 AAATCTTCTATTTCAAGGAAAAACAATCTTG
** * *
931864 AGCGAGATAAAATCTTCTGTTTCAAGG-AAAACAATCTTGAGCGAGATAAAATCTTCGGTTTCAA
1 AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTCAAGCGAGATAAAATATTCGATTTCAA
* *
931928 GGAAAAACAATCTTGAACGAGATAAAATCTTATGTTTCAAGGAAAAACAATCTTGAGTGAGATAA
66 GGAAAAACAATCTTCAACAAGATAAAATCTTATGTTTCAAGGAAAAACAATCTTGAGTGAGATAA
931993 AATCTTCTATTTCAAGGAAAAACAATCTTG
131 AATCTTCTATTTCAAGGAAAAACAATCTTG
*
932023 AGTGAGATAAAATCTTC
1 AGCGAGATAAAATCTTC
932040 CGTATTAAAT
Statistics
Matches: 162, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
159 134 0.83
160 28 0.17
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (160 bp):
AGCGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTCAAGCGAGATAAAATATTCGATTTCAA
GGAAAAACAATCTTCAACAAGATAAAATCTTATGTTTCAAGGAAAAACAATCTTGAGTGAGATAA
AATCTTCTATTTCAAGGAAAAACAATCTTG
Found at i:933513 original size:50 final size:50
Alignment explanation
Indices: 933447--933594 Score: 190
Period size: 52 Copynumber: 2.9 Consensus size: 50
933437 TATCCCAACC
* * *
933447 TTTTCATGTTGGTGTGAGA-CTTCAAGATGCCCCACATGGATAATATGTTT
1 TTTTCATGCTGATGTGA-ACCTTCAAGATGCCCCACATGGATAATATGTCT
* * *
933497 TTTTCATGCTGATGTGAACCTTCAAGATGCCTCACATGGATTACTTCTGTCT
1 TTTTCATGCTGATGTGAACCTTCAAGATGCCCCACATGGA-TA-ATATGTCT
* *
933549 TTTTCATACTGATGTGAACCTTCAAGATGCCCCACATAGATAATAT
1 TTTTCATGCTGATGTGAACCTTCAAGATGCCCCACATGGATAATAT
933595 AGACCTTCAA
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
49 1 0.01
50 37 0.44
51 4 0.05
52 42 0.50
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (50 bp):
TTTTCATGCTGATGTGAACCTTCAAGATGCCCCACATGGATAATATGTCT
Found at i:935039 original size:9 final size:9
Alignment explanation
Indices: 935025--935088 Score: 74
Period size: 9 Copynumber: 6.8 Consensus size: 9
935015 ATTCAATTTC
935025 TTTTTTCTT
1 TTTTTTCTT
935034 TTTTTTCTTT
1 TTTTTTC-TT
935044 TTTTTTCTT
1 TTTTTTCTT
*
935053 TTCTTTCTTT
1 TTTTTTC-TT
*
935063 CTTTTTTCCT
1 -TTTTTTCTT
*
935073 TTTTTTCTC
1 TTTTTTCTT
935082 TTTTTTC
1 TTTTTTC
935089 CCCTGATGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
9 29 0.62
10 12 0.26
11 6 0.13
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:935058 original size:31 final size:31
Alignment explanation
Indices: 935021--935085 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
935011 CTTGATTCAA
* *
935021 TTTCTTT-TTTCTTTTTTTTCTTTTTTTTTCT
1 TTTCTTTCTTTC-TTTTTTCCTTTTTTTCTCT
935052 TTTCTTTCTTTCTTTTTTCCTTTTTTTCTCT
1 TTTCTTTCTTTCTTTTTTCCTTTTTTTCTCT
935083 TTT
1 TTT
935086 TTCCCCTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 27 0.87
32 4 0.13
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (31 bp):
TTTCTTTCTTTCTTTTTTCCTTTTTTTCTCT
Found at i:940022 original size:20 final size:20
Alignment explanation
Indices: 939958--940022 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
939948 AATAAATGAT
* *
939958 ATAAAGA-ATATAAAAATAA
1 ATAAAGATATATTAAAATTA
* *
939977 ATACAAGTATACATCTAATA-TA
1 ATA-AAG-ATATAT-TAAAATTA
939999 ATAAAGATATATTAAAATTA
1 ATAAAGATATATTAAAATTA
940019 ATAA
1 ATAA
940023 TGTTTGGGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
19 7 0.20
20 14 0.40
21 4 0.11
22 7 0.20
23 3 0.09
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (20 bp):
ATAAAGATATATTAAAATTA
Found at i:942703 original size:17 final size:17
Alignment explanation
Indices: 942683--942715 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
942673 ATAAATACCT
*
942683 AAAATAAAGATAAAATA
1 AAAATAAAAATAAAATA
942700 AAAATAAAAATAAAAT
1 AAAATAAAAATAAAAT
942716 CCTAAATCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:942858 original size:21 final size:20
Alignment explanation
Indices: 942833--942872 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
942823 AATTATGTTT
942833 TATAATCTATCAAAATTTATA
1 TATAAT-TATCAAAATTTATA
* *
942854 TATAATTTTTAAAATTTAT
1 TATAATTATCAAAATTTAT
942873 TTGAAAATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
TATAATTATCAAAATTTATA
Found at i:943175 original size:31 final size:31
Alignment explanation
Indices: 943140--943210 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
943130 AAATTTTAAA
943140 ATAAT-AAATTAATCATTAATATTATCAATTT
1 ATAATAAAATT-ATCATTAATATTATCAATTT
*
943171 ATAATAAAATTATCATTAATATTATCGATTT
1 ATAATAAAATTATCATTAATATTATCAATTT
*
943202 ATAAAAAAA
1 ATAATAAAA
943211 ATCACTCCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 32 0.86
32 5 0.14
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.41
Consensus pattern (31 bp):
ATAATAAAATTATCATTAATATTATCAATTT
Found at i:943433 original size:15 final size:16
Alignment explanation
Indices: 943400--943439 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
943390 GAATAAATTT
943400 TAAAAAATAAAAATCTA
1 TAAAAAATAAAAA-CTA
*
943417 TAAAAAATAGAAA-TA
1 TAAAAAATAAAAACTA
943432 TAAAAAAT
1 TAAAAAAT
943440 TAAAGTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.45
17 12 0.55
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (16 bp):
TAAAAAATAAAAACTA
Found at i:943664 original size:24 final size:23
Alignment explanation
Indices: 943637--943701 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 23
943627 TAAACTTGTC
*
943637 AATTTTATATTTTTTAGATCTTTT
1 AATTTTATATTTTTTACAT-TTTT
*
943661 AATTTTA-ATTTTTTTCATTTTT
1 AATTTTATATTTTTTACATTTTT
943683 AATGTGTTATATATTTTTA
1 AAT-T-TTATAT-TTTTTA
943702 TTTGAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 7 0.21
23 10 0.29
24 10 0.29
25 2 0.06
26 5 0.15
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (23 bp):
AATTTTATATTTTTTACATTTTT
Found at i:945132 original size:22 final size:20
Alignment explanation
Indices: 945071--945130 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 20
945061 CAAAATGCAA
*
945071 AAATTAAAATAATAATAGTT
1 AAATTAAAATAATAATAATT
* *
945091 AAATCTGAAATTAACAATAATT
1 AAAT-T-AAAATAATAATAATT
945113 AAATTAAAATAA-AATAAT
1 AAATTAAAATAATAATAAT
945131 AACAGCATGC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
19 6 0.18
20 10 0.29
21 2 0.06
22 16 0.47
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (20 bp):
AAATTAAAATAATAATAATT
Found at i:951494 original size:23 final size:18
Alignment explanation
Indices: 951435--951482 Score: 96
Period size: 18 Copynumber: 2.7 Consensus size: 18
951425 AAACCGGGTG
951435 ATTTTAATAAAACATTTT
1 ATTTTAATAAAACATTTT
951453 ATTTTAATAAAACATTTT
1 ATTTTAATAAAACATTTT
951471 ATTTTAATAAAA
1 ATTTTAATAAAA
951483 TACTGAGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTTTAATAAAACATTTT
Found at i:953743 original size:29 final size:29
Alignment explanation
Indices: 953694--953775 Score: 107
Period size: 28 Copynumber: 2.9 Consensus size: 29
953684 CAGGGAACAA
*
953694 GGGATGATGGG-GTTGGTGTTGAAAAAAT
1 GGGATGGTGGGTGTTGGTGTTGAAAAAAT
953722 GGGATGGTGGGTGTTGGTGTTG-AAAAAT
1 GGGATGGTGGGTGTTGGTGTTGAAAAAAT
* * *
953750 GAG-TGGTAGGTGTTAGTGTTGAAAAA
1 GGGATGGTGGGTGTTGGTGTTGAAAAA
953776 TGGTGTTTAC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 16 0.33
28 22 0.46
29 10 0.21
ACGTcount: A:0.27, C:0.00, G:0.43, T:0.30
Consensus pattern (29 bp):
GGGATGGTGGGTGTTGGTGTTGAAAAAAT
Found at i:953747 original size:28 final size:28
Alignment explanation
Indices: 953694--953778 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 28
953684 CAGGGAACAA
*
953694 GGGATGATGGG-GTTGGTGTTGAAAAAAT
1 GGGATGGTGGGTGTTGGTGTTG-AAAAAT
953722 GGGATGGTGGGTGTTGGTGTTGAAAAAT
1 GGGATGGTGGGTGTTGGTGTTGAAAAAT
* * *
953750 GAG-TGGTAGGTGTTAGTGTTGAAAAAT
1 GGGATGGTGGGTGTTGGTGTTGAAAAAT
953777 GG
1 GG
953779 TGTTTACAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
27 23 0.45
28 18 0.35
29 10 0.20
ACGTcount: A:0.26, C:0.00, G:0.44, T:0.31
Consensus pattern (28 bp):
GGGATGGTGGGTGTTGGTGTTGAAAAAT
Found at i:957431 original size:31 final size:31
Alignment explanation
Indices: 957382--957455 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
957372 AGTTAACTCT
* * *
957382 AAGTGATCATATCCTAATTAAATAAAAACAA
1 AAGTGACCAAATCTTAATTAAATAAAAACAA
* *
957413 AAGTGACTAAATCTTAATTAAATGAAAACAA
1 AAGTGACCAAATCTTAATTAAATAAAAACAA
957444 AAGTGACCAAAT
1 AAGTGACCAAAT
957456 ATTATTTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.54, C:0.12, G:0.09, T:0.24
Consensus pattern (31 bp):
AAGTGACCAAATCTTAATTAAATAAAAACAA
Found at i:958272 original size:33 final size:32
Alignment explanation
Indices: 958214--958296 Score: 139
Period size: 33 Copynumber: 2.6 Consensus size: 32
958204 CTTTATTTTG
958214 TTCGGGTCGGGTCGGGTTTTTTAAGTGTGATA
1 TTCGGGTCGGGTCGGGTTTTTTAAGTGTGATA
* *
958246 TTCGGGTCGAGTCGAGTTTTTTTAAGTGTGATA
1 TTCGGGTCGGGTCG-GGTTTTTTAAGTGTGATA
958279 TTCGGGTCGGGTCGGGTT
1 TTCGGGTCGGGTCGGGTT
958297 CGGGTTTAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
32 16 0.35
33 30 0.65
ACGTcount: A:0.12, C:0.11, G:0.37, T:0.40
Consensus pattern (32 bp):
TTCGGGTCGGGTCGGGTTTTTTAAGTGTGATA
Found at i:961090 original size:28 final size:29
Alignment explanation
Indices: 961049--961107 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
961039 AAGTTATATC
*
961049 TTTTTTAATTAAAATATG-TACCTAAA-TA
1 TTTTTTAATCAAAAT-TGATACCTAAAGTA
*
961077 TTTTTTACTCAAAATTGATACCTAAAGTA
1 TTTTTTAATCAAAATTGATACCTAAAGTA
961106 TT
1 TT
961108 CAATTTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 2 0.07
28 21 0.78
29 4 0.15
ACGTcount: A:0.39, C:0.10, G:0.05, T:0.46
Consensus pattern (29 bp):
TTTTTTAATCAAAATTGATACCTAAAGTA
Found at i:962018 original size:23 final size:23
Alignment explanation
Indices: 961947--962011 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
961937 AACAAAGATC
961947 AAACGAACATGTTCATGAACGCT
1 AAACGAACATGTTCATGAACGCT
* *
961970 AAACGAACATGTTCACGAACGTT
1 AAACGAACATGTTCATGAACGCT
*
961993 AAACGAACGTGTTCATGAA
1 AAACGAACATGTTCATGAA
962012 TACTAAATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (23 bp):
AAACGAACATGTTCATGAACGCT
Found at i:967929 original size:61 final size:61
Alignment explanation
Indices: 967821--968131 Score: 389
Period size: 61 Copynumber: 5.1 Consensus size: 61
967811 TAGCTTAATC
* * *
967821 AAAAAAAAATATTTTATTCTTATCTTAACTTTAAAAAAATTATTTTATTCTTATCTCAACTTT
1 AAAAAAACATATTTTATTCTTATATTAACTTT-AAAAAA-TATTTTATTCTTATCTTAACTTT
* *
967884 AAAAAAACATATTTTATTCTTATCTTAACTTTAAAAAATATTTTATTCTTATCTAAACTTT
1 AAAAAAACATATTTTATTCTTATATTAACTTTAAAAAATATTTTATTCTTATCTTAACTTT
** *
967945 AAAAAAACATATTTTATTCTTATATTAACTTTAAAATGTATTTTATT-TTCATTTTAACTTT
1 AAAAAAACATATTTTATTCTTATATTAACTTTAAAAAATATTTTATTCTT-ATCTTAACTTT
* * * *
968006 AAAAATATATATTTTATTATTATATTAAC-TTAAAAAATATCTTCTATTCTTATTTTAAC-TT
1 AAAAAAACATATTTTATTCTTATATTAACTTTAAAAAATAT-TT-TATTCTTATCTTAACTTT
* * * *
968067 CAAAAAATATATCTTATTCTTATATTAA-ATTAAAAATATATTTTATTCTTATCTTAA-TTT
1 AAAAAAACATATTTTATTCTTATATTAACTTTAAAAA-ATATTTTATTCTTATCTTAACTTT
968127 AAAAA
1 AAAAA
968132 TATATTTTAC
Statistics
Matches: 223, Mismatches: 18, Indels: 17
0.86 0.07 0.07
Matches are distributed among these distances:
60 30 0.13
61 138 0.62
62 22 0.10
63 33 0.15
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.49
Consensus pattern (61 bp):
AAAAAAACATATTTTATTCTTATATTAACTTTAAAAAATATTTTATTCTTATCTTAACTTT
Found at i:968147 original size:29 final size:30
Alignment explanation
Indices: 967823--968140 Score: 349
Period size: 29 Copynumber: 10.5 Consensus size: 30
967813 GCTTAATCAA
*
967823 AAAAAAATATTTTATTCTTATCTTAACTTT
1 AAAAATATATTTTATTCTTATCTTAACTTT
* *
967853 AAAAAAATTATTTTATTCTTATCTCAACTTT
1 AAAAATA-TATTTTATTCTTATCTTAACTTT
*
967884 AAAAAAACATATTTTATTCTTATCTTAACTTT
1 --AAAAATATATTTTATTCTTATCTTAACTTT
*
967916 AAAAA-ATATTTTATTCTTATCTAAACTTT
1 AAAAATATATTTTATTCTTATCTTAACTTT
* *
967945 AAAAAAACATATTTTATTCTTATATTAACTTT
1 --AAAAATATATTTTATTCTTATCTTAACTTT
* *
967977 -AAAATGTATTTTATT-TTCATTTTAACTTT
1 AAAAATATATTTTATTCTT-ATCTTAACTTT
* * *
968006 AAAAATATATATTTTATTATTATATTAACTTA
1 -AAAA-ATATATTTTATTCTTATCTTAACTTT
* * * *
968038 AAAAATATCTTCTATTCTTATTTTAACTTCA
1 AAAAATATATTTTATTCTTATCTTAACTT-T
* * *
968069 AAAAATATATCTTATTCTTATATTAA-ATT
1 AAAAATATATTTTATTCTTATCTTAACTTT
968098 AAAAATATATTTTATTCTTATCTTAA-TTT
1 AAAAATATATTTTATTCTTATCTTAACTTT
968127 AAAAATATATTTTA
1 AAAAATATATTTTA
968141 CTTTTATTTG
Statistics
Matches: 251, Mismatches: 25, Indels: 25
0.83 0.08 0.08
Matches are distributed among these distances:
28 2 0.01
29 86 0.34
30 34 0.14
31 57 0.23
32 64 0.25
33 8 0.03
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (30 bp):
AAAAATATATTTTATTCTTATCTTAACTTT
Found at i:968369 original size:15 final size:16
Alignment explanation
Indices: 968349--968381 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
968339 TTAAATCAAG
*
968349 ATAAG-AATAAAGTAT
1 ATAAGAAATAAAATAT
968364 ATAAGAAATAAAATAT
1 ATAAGAAATAAAATAT
968380 AT
1 AT
968382 TCTTTGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (16 bp):
ATAAGAAATAAAATAT
Found at i:968516 original size:30 final size:30
Alignment explanation
Indices: 968364--968517 Score: 152
Period size: 30 Copynumber: 5.1 Consensus size: 30
968354 AATAAAGTAT
*
968364 ATAAGAAATAAAATATATTCTTTGAAA-TTAAG
1 ATAAG-AATAAAATATATT-TTT-AAAGTTAAA
* * * * *
968396 ATAATAACAAAACACATTTTTTAAGTTAATA
1 ATAAGAATAAAATATATTTTTAAAGTTAA-A
* * **
968427 A-AAGAATAAAATAGAATTTTAAAGTTAGG
1 ATAAGAATAAAATATATTTTTAAAGTTAAA
968456 ATAAGAATAAAATATATTTTTAAA-TTAAA
1 ATAAGAATAAAATATATTTTTAAAGTTAAA
*
968485 ATAAGAATACAATATATTTTTAAAGTTAAA
1 ATAAGAATAAAATATATTTTTAAAGTTAAA
968515 ATA
1 ATA
968518 TATAAAATGT
Statistics
Matches: 99, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
29 29 0.29
30 55 0.56
31 11 0.11
32 4 0.04
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (30 bp):
ATAAGAATAAAATATATTTTTAAAGTTAAA
Found at i:969382 original size:12 final size:12
Alignment explanation
Indices: 969365--969397 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
969355 TTAGTCAAAT
969365 TATTTAAATTTA
1 TATTTAAATTTA
969377 TATTTAAATTTA
1 TATTTAAATTTA
969389 -ATTATAAAT
1 TATT-TAAAT
969398 ATTTATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 3 0.15
12 17 0.85
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TATTTAAATTTA
Found at i:969487 original size:27 final size:28
Alignment explanation
Indices: 969436--969490 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
969426 GTTTAAAGGG
*
969436 TTTTTTTAATAATTTTATACAATATATA
1 TTTTTTTAATAATTATATACAATATATA
969464 TTTTTTT-ATATATTATATAC-ATATATA
1 TTTTTTTAATA-ATTATATACAATATATA
969491 ATACAAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 10 0.40
28 15 0.60
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (28 bp):
TTTTTTTAATAATTATATACAATATATA
Found at i:972640 original size:2 final size:2
Alignment explanation
Indices: 972633--972658 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
972623 ATTTGAAATT
972633 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
972659 GTTTAGTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.