Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008937.1 Hibiscus syriacus cultivar Beakdansim tig00112255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 635368
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 4 of 4
Found at i:540208 original size:2 final size:2
Alignment explanation
Indices: 540201--540260 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
540191 AATATACCAC
540201 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
540243 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
540261 TTCTATAAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:540552 original size:2 final size:2
Alignment explanation
Indices: 540545--540570 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
540535 GACCATGAAC
540545 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
540571 TTTGTTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:541041 original size:3 final size:3
Alignment explanation
Indices: 541033--541123 Score: 182
Period size: 3 Copynumber: 30.3 Consensus size: 3
541023 CCAGAAACTC
541033 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
541081 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
541124 CAACTGAGTT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 88 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:546212 original size:15 final size:15
Alignment explanation
Indices: 546180--546215 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
546170 ATAATAATAC
546180 ATTTAATATTTTATA
1 ATTTAATATTTTATA
546195 ATTT-ATATTTTATA
1 ATTTAATATTTTATA
*
546209 AATTAAT
1 ATTTAAT
546216 TTAATGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTAATATTTTATA
Found at i:546251 original size:79 final size:79
Alignment explanation
Indices: 546161--546315 Score: 256
Period size: 79 Copynumber: 2.0 Consensus size: 79
546151 TTTAATTTTT
* *
546161 AACTAAGTTATAATAATACATTTAATATTTTATAATTTATATTTTATAAATTAATTTAATGGTAT
1 AACTAAGTTATAATAATACATTTAATATTTTATAATTTATATTTTATAAATTAATTTAATGATAA
546226 TCGTTATTAATGGA
66 TCGTTATTAATGGA
* * * *
546240 AACTAATTTATAATTATACGTTTAATATTTTATAATTTATGTTTTATAAATTAATTTAATGATAA
1 AACTAAGTTATAATAATACATTTAATATTTTATAATTTATATTTTATAAATTAATTTAATGATAA
546305 TCGTTATTAAT
66 TCGTTATTAAT
546316 ATTACTCATC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 70 1.00
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (79 bp):
AACTAAGTTATAATAATACATTTAATATTTTATAATTTATATTTTATAAATTAATTTAATGATAA
TCGTTATTAATGGA
Found at i:546337 original size:23 final size:23
Alignment explanation
Indices: 546308--546353 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
546298 ATGATAATCG
546308 TTATTAATATTACTCATCCGACA
1 TTATTAATATTACTCATCCGACA
546331 TTATTAATATTACTCATCCGACA
1 TTATTAATATTACTCATCCGACA
546354 GCATCATCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (23 bp):
TTATTAATATTACTCATCCGACA
Found at i:549004 original size:12 final size:12
Alignment explanation
Indices: 548983--549022 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
548973 ATTAGATTTC
548983 TTATTT-TTTTA
1 TTATTTATTTTA
548994 TTATTTATTTTA
1 TTATTTATTTTA
549006 -TATTATATTTT-
1 TTATT-TATTTTA
549017 TTATTT
1 TTATTT
549023 CTAATTCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 11 0.42
12 15 0.58
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TTATTTATTTTA
Found at i:549009 original size:14 final size:14
Alignment explanation
Indices: 548984--549020 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
548974 TTAGATTTCT
548984 TATTTTTT-TATTA
1 TATTTTTTATATTA
548997 T-TTATTTTATATTA
1 TATT-TTTTATATTA
549011 TATTTTTTAT
1 TATTTTTTAT
549021 TTCTAATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 2 0.10
13 5 0.24
14 12 0.57
15 2 0.10
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (14 bp):
TATTTTTTATATTA
Found at i:551092 original size:2 final size:2
Alignment explanation
Indices: 551085--551112 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
551075 TCTGAATTCA
551085 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
551113 TTAAAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:551260 original size:20 final size:20
Alignment explanation
Indices: 551235--551272 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
551225 TTTAGTTAAT
* *
551235 ATTAAACCGAAATTTAAAAG
1 ATTAAACCAAAAATTAAAAG
551255 ATTAAACCAAAAATTAAA
1 ATTAAACCAAAAATTAAA
551273 CCCCGACAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.11, G:0.05, T:0.24
Consensus pattern (20 bp):
ATTAAACCAAAAATTAAAAG
Found at i:560266 original size:77 final size:77
Alignment explanation
Indices: 560138--560386 Score: 471
Period size: 77 Copynumber: 3.2 Consensus size: 77
560128 ACATTAACTT
*
560138 CAATCGAGCAATGGACAGCCTGTGATGGTAGAAGATAAAAGAAGGGGGAGAGAATGATGGAAGGG
1 CAATCGAGCAATGGACAGCCTGTGATGGTAGAAGATAAAAGAAGGGAGAGAGAATGATGGAAGGG
560203 CCAATCGACATC
66 CCAATCGACATC
560215 CAATCGAGCAATGGACAGCCTGTGATGGTAGAAGATAAAAGAAGGGAGAGAGAATGATGGAAGGG
1 CAATCGAGCAATGGACAGCCTGTGATGGTAGAAGATAAAAGAAGGGAGAGAGAATGATGGAAGGG
560280 CCAATCGACATC
66 CCAATCGACATC
* *
560292 CAATCGAGCAATGGACAGCATGTGATGGTAGAAGATAAAAGAAGGGAGACAGAATGATGGAAGGG
1 CAATCGAGCAATGGACAGCCTGTGATGGTAGAAGATAAAAGAAGGGAGAGAGAATGATGGAAGGG
560357 CCAATCGACATC
66 CCAATCGACATC
560369 CAATCGAGCAATGGACAG
1 CAATCGAGCAATGGACAG
560387 AGTGTTGTTT
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
77 169 1.00
ACGTcount: A:0.39, C:0.15, G:0.32, T:0.14
Consensus pattern (77 bp):
CAATCGAGCAATGGACAGCCTGTGATGGTAGAAGATAAAAGAAGGGAGAGAGAATGATGGAAGGG
CCAATCGACATC
Found at i:561255 original size:227 final size:226
Alignment explanation
Indices: 560969--561419 Score: 893
Period size: 227 Copynumber: 2.0 Consensus size: 226
560959 ACCGGTTCCA
560969 GGCGTAACCGATGCAGGGTTAACATCCGTAGTCAAATACTCGGCGGCTTCAGGCGTCACACTGGA
1 GGCGTAACCGATGCAGGGTTAACATCCGTAGTCAAATACTCGGCGGCTTCAGGCGTCACACTGGA
561034 GGAAGAAGATCGAGAGCGCTTGGAAGCCTTTCGGGTGCCACCACCAACAGGAACGTTACGCAGAG
66 GGAAGAAGATCGAGAGCGCTTGGAAGCCTTTCGGGTGCCACCACCAACAGGAACGTTACGCAGAG
561099 TTCCAACTTGAGTCCAGTATCGACGGCACGACTTTGCAAAAGTAGCGAGGCTGAGAGAGGTTGTA
131 TTCCAACTTGAGTCCAGTATCGACGGCACGAC-TTGCAAAAGTAGCGAGGCTGAGAGAGGTTGTA
561164 GTTGTTGTAGTAGCAGAACTTGGTGTTATTTG
195 GTTGTTGTAGTAGCAGAACTTGGTGTTATTTG
561196 GGCGTAACCGATGCAGGGTTAACATCCGTAGTCAAATACTCGGCGGCTTCAGGCGTCACACTGGA
1 GGCGTAACCGATGCAGGGTTAACATCCGTAGTCAAATACTCGGCGGCTTCAGGCGTCACACTGGA
561261 GGAAGAAGATCGAGAGCGCTTGGAAGCCTTTCGGGTGCCACCACCAACAGGAACGTTACGCAGAG
66 GGAAGAAGATCGAGAGCGCTTGGAAGCCTTTCGGGTGCCACCACCAACAGGAACGTTACGCAGAG
561326 TTCCAACTTGAGTCCAGTATCGACGGCACGACTTGCAAAAGTAGCGAGGCTGAGAGAGGTTGTAG
131 TTCCAACTTGAGTCCAGTATCGACGGCACGACTTGCAAAAGTAGCGAGGCTGAGAGAGGTTGTAG
561391 TTGTTGTAGTAGCAGAACTTGGTGTTATT
196 TTGTTGTAGTAGCAGAACTTGGTGTTATT
561420 GAGTCAAACC
Statistics
Matches: 224, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
226 62 0.28
227 162 0.72
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (226 bp):
GGCGTAACCGATGCAGGGTTAACATCCGTAGTCAAATACTCGGCGGCTTCAGGCGTCACACTGGA
GGAAGAAGATCGAGAGCGCTTGGAAGCCTTTCGGGTGCCACCACCAACAGGAACGTTACGCAGAG
TTCCAACTTGAGTCCAGTATCGACGGCACGACTTGCAAAAGTAGCGAGGCTGAGAGAGGTTGTAG
TTGTTGTAGTAGCAGAACTTGGTGTTATTTG
Found at i:565783 original size:34 final size:34
Alignment explanation
Indices: 565745--565829 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
565735 GTAATAAACA
* *
565745 AAATTAACCAAAATACATTAACAAA-AAGTCCAA-C
1 AAATTAA-CAAAATAAATTAA-AAATAAATCCAATC
565779 AAATTTAACAAAATAAATTAAAAATAAATCCAATC
1 AAA-TTAACAAAATAAATTAAAAATAAATCCAATC
**
565814 AAATTAATGAAATAAA
1 AAATTAACAAAATAAA
565830 GTAAGTATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
33 3 0.07
34 33 0.75
35 8 0.18
ACGTcount: A:0.62, C:0.13, G:0.02, T:0.22
Consensus pattern (34 bp):
AAATTAACAAAATAAATTAAAAATAAATCCAATC
Found at i:568134 original size:24 final size:23
Alignment explanation
Indices: 568096--568155 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
568086 TAATTAAATA
* *
568096 AAATATTAA-AAAAATTATATACTT
1 AAATA-TAATAAAAATAAAATA-TT
568120 AAATA-AATTAAAAATAAAATATT
1 AAATATAA-TAAAAATAAAATATT
568143 AAATATAATAAAA
1 AAATATAATAAAA
568156 TATACCTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
22 2 0.06
23 12 0.39
24 17 0.55
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATAATAAAAATAAAATATT
Found at i:568738 original size:33 final size:34
Alignment explanation
Indices: 568699--568764 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 34
568689 AATATTATTA
568699 TTTACGTAAAACATTAATATTTTTTAA-ATTTAT
1 TTTACGTAAAACATTAATATTTTTTAACATTTAT
568732 TTTACGTAAAACATTAATATTTTTTAACATTTA
1 TTTACGTAAAACATTAATATTTTTTAACATTTA
568765 CGGTAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.50
Consensus pattern (34 bp):
TTTACGTAAAACATTAATATTTTTTAACATTTAT
Found at i:581101 original size:23 final size:25
Alignment explanation
Indices: 581045--581107 Score: 80
Period size: 23 Copynumber: 2.6 Consensus size: 25
581035 CAACAAAGAG
581045 AGAAAG-AAGAAAAAGATATAGCAAA
1 AGAAAGAAAGAAAAAGA-ATAGCAAA
581070 A-AAATGAAAGAAAAAG-ATAG-AAA
1 AGAAA-GAAAGAAAAAGAATAGCAAA
581093 AGAAAGAAAGAAAAA
1 AGAAAGAAAGAAAAA
581108 AAAATAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
23 14 0.40
24 10 0.29
25 2 0.06
26 9 0.26
ACGTcount: A:0.73, C:0.02, G:0.19, T:0.06
Consensus pattern (25 bp):
AGAAAGAAAGAAAAAGAATAGCAAA
Found at i:583242 original size:42 final size:40
Alignment explanation
Indices: 583190--583287 Score: 106
Period size: 42 Copynumber: 2.4 Consensus size: 40
583180 TCCAAAATTT
* *
583190 ATAAGTCCTTCGGGCAATCAGTAAGTCTTCCAAGCATGATG
1 ATAAATCCTTCGGGC-ATCAGTAAGTCTTCCAAGCAAGATG
* * * *
583231 CTTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATG
1 -ATAAATCCTTCGGG-CATCAGTAAGTCTTCCAAGCAAGATG
*
583273 ATAAGTCCTTCGGGC
1 ATAAATCCTTCGGGC
583288 CATCCATAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
40 1 0.02
41 12 0.26
42 33 0.70
43 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (40 bp):
ATAAATCCTTCGGGCATCAGTAAGTCTTCCAAGCAAGATG
Found at i:583298 original size:41 final size:42
Alignment explanation
Indices: 583190--583313 Score: 126
Period size: 41 Copynumber: 3.0 Consensus size: 42
583180 TCCAAAATTT
* * * *
583190 ATAAGTCCTTCGGGCAAT-CAGTAAGTCTTCCAAGCATGATGC
1 ATAAGTCCTTCGGGCCATCCA-TAAGTCTTTCGAGCAAGATGC
* * * **
583232 TTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATG-
1 ATAAGTCCTTCGGGCCATCCATAAGTCTTTCGAGCAAGATGC
* *
583273 ATAAGTCCTTCGGGCCATCCATAAGTCCTTCGGGCAAGATG
1 ATAAGTCCTTCGGGCCATCCATAAGTCTTTCGAGCAAGATG
583314 TTTTTCAAAT
Statistics
Matches: 65, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
41 34 0.52
42 31 0.48
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (42 bp):
ATAAGTCCTTCGGGCCATCCATAAGTCTTTCGAGCAAGATGC
Found at i:583547 original size:231 final size:231
Alignment explanation
Indices: 583102--583724 Score: 973
Period size: 231 Copynumber: 2.7 Consensus size: 231
583092 AAAGAATGAC
*
583102 ATGAGAAAGGTTTCTCA-TTACAATATGAAAATTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTA
1 ATGAGAAAGGTTTCTCATTTA-AATCTG-AAATTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTA
* * * *
583166 CTTAGTAAAATATTTCCAAAATTTATAAGTCCTTCGGGCAATCAGTAAGTCTTCCAAGCATGATG
64 CCTAGTAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTCCGAG-ATGATG
*
583231 CTTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATA
128 CTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATA
* *
583296 AGTCCTTCGGGCAAGATGTTTTTCAAATGTCTATTAAAAT
193 AGACCTTCGGGCAAGATG-TTTTCAAATGTCTATCAAAAT
*
583336 ATGAGAAAGGTTTCTCATTTAAATCTGAAATTAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACC
1 ATGAGAAAGGTTTCTCATTTAAATCTGAAATTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACC
* * * *
583401 CAATAAACTATTTCCAAAATTTATAAGTCTTTCGGGCCATCAGTAAGTCTTCCGAG-GGATGCTT
66 TAGTAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTCCGAGATGATGCTT
* *
583465 AAATCCTTTGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCTGGCCATCCATAAGA
131 AAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGA
* *
583530 CCTTCGGGCAGGATGTTTTCACATGTCTATCAAAAT
196 CCTTCGGGCAAGATGTTTTCAAATGTCTATCAAAAT
*
583566 ATGAGAAAGGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTTC
1 ATGAGAAAGGTTTCTCATTTAAATCTGAAA-TTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTAC
* *
583631 CTAGTAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTCAGAGTATGATGA
65 CTAGTAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTCCGAG-ATGATGC
* *
583696 TTAAGTCCTTCGGGCCATCT-TAAGCCTTT
129 TTAAATCCTTCGGGTCATCTGTAAGCCTTT
583725 ACCAAAGAGT
Statistics
Matches: 357, Mismatches: 28, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
230 49 0.14
231 167 0.47
232 9 0.03
233 107 0.30
234 22 0.06
235 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (231 bp):
ATGAGAAAGGTTTCTCATTTAAATCTGAAATTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACC
TAGTAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTCCGAGATGATGCTT
AAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGA
CCTTCGGGCAAGATGTTTTCAAATGTCTATCAAAAT
Found at i:583770 original size:37 final size:37
Alignment explanation
Indices: 583710--584350 Score: 397
Period size: 37 Copynumber: 17.2 Consensus size: 37
583700 GTCCTTCGGG
* *
583710 CCATCTTAAGCCTTTACCAAAGAGTAGTGAAGCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* *
583747 CAATCTAAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
*
583784 CCATCTTAAGCTTTCACCGAAGAGTAGTGAAGCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* * *
583821 CAATATTAAGCCTTCACTGAAGAGTAGTGAAGCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* ** * * * * *** ****
583858 TCATCAACAAGCATTCCGAGCATGATGATTAAGT-CCTCCGGG
1 CCATC-TTAAGCCTT-C-A-C-CGAAGAGT-AGTGAAGCAAAT
* *
583900 CCATCTTAAGCCTTCACCAAAGAGTAGTGAAACAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* * *
583937 CAATCTTAAGCATTCACTGAAGAGTAGTGAAGCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* * * * * * *** ****
583974 TCACCAGTAAGCCTTTCGAGCATGATGATTAAGT-CCTCCGGG
1 CCATC-TTAAGCC-TTC-A-C-CGAAGAGT-AGTGAAGCAAAT
* * *
584016 CCATCTTAAGTCTTCACCAAAGAGTAGTGAAACAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* *
584053 CAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
** * * * * **** ***
584090 TTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTTCGGGT
1 CCATC-TTAAGCCTT-C-A-C-CGAAGAGT-AGTGAAGCAAAT
* *
584133 -CATCATAAGCCTTCACC---------TGAAACAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* *
584160 CAATCTTAAGCCTTCACCGAAGAGTAATGAAGCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* *
584197 CCATTTTAAGCCTTCACCGAAGAGTAGTGAATCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* *
584234 CCATTTTAAGCCTTCACCGAAGAGTAGTGAATCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
*
584271 CCATTTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* * *
584308 CCATCTTTAGCCTTCATCGAAGAGTGGTGAAGCAAAT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
*
584345 CAATCT
1 CCATCT
584351 CGAGTATGAT
Statistics
Matches: 459, Mismatches: 115, Indels: 60
0.72 0.18 0.09
Matches are distributed among these distances:
27 3 0.01
28 15 0.03
36 6 0.01
37 334 0.73
38 22 0.05
39 8 0.02
40 8 0.02
41 22 0.05
42 30 0.07
43 11 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (37 bp):
CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
Found at i:583928 original size:116 final size:116
Alignment explanation
Indices: 583784--584312 Score: 620
Period size: 116 Copynumber: 4.7 Consensus size: 116
583774 TGAAGCAAAT
* * * *
583784 CCATCTTAAGCTTTCACCGAAGAGTAGTGAAGCAAATCAATATTAAGCCTTCACTGAAGAGTAGT
1 CCATCTTAAGCCTTCACCAAAGAGTAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGT
** *
583849 GAAGCAAATTCATCAACAAGCATTCCGAGCATGATGATTAAGTCCTCCGGG
66 GAAGCAAATTCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGG
*
583900 CCATCTTAAGCCTTCACCAAAGAGTAGTGAAACAAATCAATCTTAAGCATTCACTGAAGAGTAGT
1 CCATCTTAAGCCTTCACCAAAGAGTAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGT
* *
583965 GAAGCAAATTCACCAGTAAGCCTTTCGAGCATGATGATTAAGTCCTCCGGG
66 GAAGCAAATTCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGG
*
584016 CCATCTTAAGTCTTCACCAAAGAGTAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGT
1 CCATCTTAAGCCTTCACCAAAGAGTAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGT
* *
584081 GAAGCAAATTTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTTCGGG
66 GAAGCAAATTCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGG
* * * *
584132 TCATCATAAGCCTTCACC---------TGAAACAAATCAATCTTAAGCCTTCACCGAAGAGTAAT
1 CCATCTTAAGCCTTCACCAAAGAGTAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGT
* ** * * * ** ****
584188 GAAGCAAATCCAT-TTTAAGCCTT-C-A-C-CGAAGAGT-AGTGAATCAAAT
66 GAAGCAAATTCATCAGTAAGCCTTCCGAGCATGATGATTAAGT-CCTCCGGG
* * * * * *
584234 CCATTTTAAGCCTTCACCGAAGAGTAGTGAATCAAATCCATTTTAAGCCTTCACCGAAGAGTAGT
1 CCATCTTAAGCCTTCACCAAAGAGTAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGT
*
584299 GAAGCAAATCCATC
66 GAAGCAAATTCATC
584313 TTTAGCCTTC
Statistics
Matches: 360, Mismatches: 42, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
101 3 0.01
102 21 0.06
103 1 0.00
104 1 0.00
105 1 0.00
106 8 0.02
107 47 0.13
111 47 0.13
116 231 0.64
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (116 bp):
CCATCTTAAGCCTTCACCAAAGAGTAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGT
GAAGCAAATTCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGG
Found at i:603031 original size:16 final size:16
Alignment explanation
Indices: 602988--603032 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
602978 TTAATTTAAA
*
602988 TAAAAAGTTTAAAGTTT
1 TAAAAAG-TCAAAGTTT
*
603005 TCAATAAGTCAAAGTTT
1 T-AAAAAGTCAAAGTTT
603022 TAAAAAGTCAA
1 TAAAAAGTCAA
603033 TGTGACACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 9 0.38
17 10 0.42
18 5 0.21
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.33
Consensus pattern (16 bp):
TAAAAAGTCAAAGTTT
Found at i:605641 original size:16 final size:17
Alignment explanation
Indices: 605608--605642 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
605598 TAAAAAGTTT
605608 AAAGTTTTCAATAAGTC
1 AAAGTTTTCAATAAGTC
*
605625 AAAGTTTTGAA-AAGTC
1 AAAGTTTTCAATAAGTC
605641 AA
1 AA
605643 TGTGACACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.46, C:0.09, G:0.14, T:0.31
Consensus pattern (17 bp):
AAAGTTTTCAATAAGTC
Found at i:608953 original size:64 final size:63
Alignment explanation
Indices: 608815--608953 Score: 142
Period size: 63 Copynumber: 2.2 Consensus size: 63
608805 TCCGGGCAAG
* *
608815 GTGCATCGATGCATAAGTAGTTCATCGATGCACACCTAAATAAATAAGCATCGAATGCACTGA
1 GTGCATCGATGCACAAATAGTTCATCGATGCACACCTAAATAAATAAGCATCGAATGCACTGA
** * *
608878 GTTTATCGATGCACAAATAGTGT-ATCGATGCACTCCCTTAAGATGAA-AA-CATCGAATGCA-T
1 GTGCATCGATGCACAAATAGT-TCATCGATGCAC-ACC-TAA-ATAAATAAGCATCGAATGCACT
*
608939 ATA
62 -GA
608942 GTGCATCGATGC
1 GTGCATCGATGC
608954 GTAGGCTGTG
Statistics
Matches: 62, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
63 28 0.45
64 25 0.40
65 5 0.08
66 4 0.06
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCACAAATAGTTCATCGATGCACACCTAAATAAATAAGCATCGAATGCACTGA
Found at i:609521 original size:117 final size:117
Alignment explanation
Indices: 609315--609590 Score: 385
Period size: 117 Copynumber: 2.4 Consensus size: 117
609305 TGGCACTTTG
* * * ** * *
609315 TGTGCTAGAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTGAGTGTGCT
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
* *
609380 AAATGATAAGGAAATCATATTGAAATTATGGATTTCCATATAGGGCATATTA
66 AAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATATTA
* * *
609432 TGTGCTAAAATGGTAAGGGAATCATATTGAGTGTATGGGTTTCCAGATAAAGCACTAAGGGTGCT
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
*
609497 AAATGATAAGGAAATCATATTGAAAATATGGATTTCTAGATAGGGCATATTA
66 AAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATATTA
* *
609549 TGTGCTAAAATGGTAA-CAAACTCATACT-AATGGTATGGATTT
1 TGTGCTAAAATGGTAAGGAAA-TCATACTGAGT-GTATGGATTT
609591 TCGAATAGGG
Statistics
Matches: 139, Mismatches: 18, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
116 4 0.03
117 135 0.97
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (117 bp):
TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
AAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATATTA
Found at i:609554 original size:58 final size:59
Alignment explanation
Indices: 609314--609557 Score: 248
Period size: 58 Copynumber: 4.2 Consensus size: 59
609304 ATGGCACTTT
* ** * * *
609314 GTGTGCTAGAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATAT-GGAGCA-CTGA
1 GTGTGCTA-AATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAGG-GCATATTA
* *
609373 GTGTGCTAAATGATAAGGAAATCATATTGAAATTATGGATTTCCATATAGGGCATATTA
1 GTGTGCTAAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAGGGCATATTA
* * ** * **
609432 -TGTGCTAAAATGGTAAGGGAATCATATTGAGTGTATGGGTTTCCAGATAAAGCACTA--A
1 GTGTGCT-AAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAGGGCA-TATTA
* * *
609490 GGGTGCTAAATGATAAGGAAATCATATTGAAAATATGGATTTCTAGATAGGGCATATTA
1 GTGTGCTAAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAGGGCATATTA
609549 -TGTGCTAAA
1 GTGTGCTAAA
609558 ATGGTAACAA
Statistics
Matches: 152, Mismatches: 26, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
57 2 0.01
58 92 0.61
59 56 0.37
60 2 0.01
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (59 bp):
GTGTGCTAAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAGGGCATATTA
Found at i:610149 original size:21 final size:21
Alignment explanation
Indices: 610123--610166 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
610113 TGCAGAAATT
*
610123 ACTGTAGCAATGTATCGATAC
1 ACTGTAGCAATGCATCGATAC
*
610144 ACTGTAGCAGTGCATCGATAC
1 ACTGTAGCAATGCATCGATAC
610165 AC
1 AC
610167 ATTTTTATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (21 bp):
ACTGTAGCAATGCATCGATAC
Found at i:616615 original size:117 final size:117
Alignment explanation
Indices: 616409--616684 Score: 360
Period size: 117 Copynumber: 2.4 Consensus size: 117
616399 TGGCACTTTG
* * ** ** * * *
616409 TGTGCTAGAATGATAAG-GAAATCATACTGAGTGTATGGATTTCCATTTGGAGCACTGAGTGTGC
1 TGTGCTAAAATGGTAAGAG-AATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTAC
* *
616473 TAAATGATAAGGAAATCATATTGAAATTATGGATTTCCATATAGGG-ATTATTA
65 TAAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCA-TATTA
* *
616526 TGTGCTAAAATGGTAAGAGAATCATATTGAGTGTATGGGTTTCCAGATAAAGCACTAAGGGTACT
1 TGTGCTAAAATGGTAAGAGAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTACT
616591 AAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATATTA
66 AAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATATTA
* * *
616643 TGTGCTAAAATGGTAACAAAATCATACT-AATGGTATGGATTT
1 TGTGCTAAAATGGTAAGAGAATCATACTGAGT-GTATGGATTT
616685 TCGAATAGGG
Statistics
Matches: 138, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
116 2 0.01
117 134 0.97
118 2 0.01
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (117 bp):
TGTGCTAAAATGGTAAGAGAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTACT
AAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATATTA
Found at i:616629 original size:58 final size:58
Alignment explanation
Indices: 616408--616632 Score: 204
Period size: 58 Copynumber: 3.8 Consensus size: 58
616398 ATGGCACTTT
* ** ** ** *
616408 GTGTGCTAGAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATTTGGAGCACTGA
1 GTGTGCTA-AATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAAAGCACTAA
* * * * *
616467 GTGTGCTAAATGATAAGGAAATCATATTGAAATTATGGATTTCCATAT-AGGGATTATTA
1 GTGTGCTAAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAAAGCACTA--A
* ** *
616526 -TGTGCTAAAATGGTAA-GAGAATCATATTGAGTGTATGGGTTTCCAGATAAAGCACTAA
1 GTGTGCT-AAATGATAAGGA-AATCATATTGAAAGTATGGATTTCCAGATAAAGCACTAA
* * *
616584 GGGTACTAAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATA
1 GTGTGCTAAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATA
616633 GGGCATATTA
Statistics
Matches: 133, Mismatches: 26, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
57 3 0.02
58 78 0.59
59 47 0.35
60 5 0.04
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.31
Consensus pattern (58 bp):
GTGTGCTAAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAAAGCACTAA
Found at i:616651 original size:58 final size:60
Alignment explanation
Indices: 616400--616719 Score: 231
Period size: 59 Copynumber: 5.5 Consensus size: 60
616390 ATTACCGAAT
* ** * *
616400 GGCACT-TT-GTGTGCTAGAATGATAAGGAAATCATACTGAGTGTATGGATTTCCA-TTTG
1 GGCACTATTAGTGTGCTA-AATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAG
* * *
616458 GAGCAC--TGAGTGTGCTAAATGATAAGGAAATCATATTGAAATTATGGATTTCCATATAG
1 G-GCACTATTAGTGTGCTAAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAG
* * ** * *
616517 GG-ATTATTA-TGTGCTAAAATGGTAA-GAGAATCATATTGAGTGTATGGGTTTCCAGATAA
1 GGCACTATTAGTGTGCT-AAATGATAAGGA-AATCATATTGAAAGTATGGATTTCCAGATAG
* * * *
616576 AGCACTA--AGGGTACTAAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAG
1 GGCACTATTAGTGTGCTAAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAG
* ** * * *
616634 GGCA-TATTA-TGTGCTAAAATGGTAACAAAATCATACT-AATGGTATGGATTTTC-GAATAG
1 GGCACTATTAGTGTGCT-AAATGATAAGGAAATCATATTGAA-AGTATGGATTTCCAG-ATAG
*
616693 GGCACT-TT-GTGTGCTAAAATGAAAAGG
1 GGCACTATTAGTGTGCT-AAATGATAAGG
616720 GAAGCATACT
Statistics
Matches: 205, Mismatches: 40, Indels: 33
0.74 0.14 0.12
Matches are distributed among these distances:
57 3 0.01
58 89 0.43
59 109 0.53
60 4 0.02
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (60 bp):
GGCACTATTAGTGTGCTAAATGATAAGGAAATCATATTGAAAGTATGGATTTCCAGATAG
Found at i:616680 original size:59 final size:59
Alignment explanation
Indices: 616400--616757 Score: 193
Period size: 59 Copynumber: 6.1 Consensus size: 59
616390 ATTACCGAAT
* * * * * * * *
616400 GGCACT-TTGTGTGCTAGAATGATAAGGAAATCATACTGAGTGTATGGATTTCCA-TTTG
1 GGCACTATTATGTGCTAAAATGGTAAGAAAATCATATTAAG-GTATGGATTTCCAGATAG
* * * ** *
616458 GAGCACTGA--GTGTGCT-AAATGATAAGGAAATCATATTGAAATTATGGATTTCCATATAG
1 G-GCACT-ATTATGTGCTAAAATGGTAAGAAAATCATATT-AAGGTATGGATTTCCAGATAG
* * * * *
616517 GG-ATTATTATGTGCTAAAATGGTAAGAGAATCATATTGAGTGTATGGGTTTCCAGATAA
1 GGCACTATTATGTGCTAAAATGGTAAGAAAATCATATTAAG-GTATGGATTTCCAGATAG
* * * * * **
616576 AGCACTA--AGGGTACT-AAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAG
1 GGCACTATTA-TGTGCTAAAATGGTAAGAAAATCATATT-AAGGTATGGATTTCCAGATAG
* * *
616634 GGCA-TATTATGTGCTAAAATGGTAACAAAATCATACTAATGGTATGGATTTTC-GAATAG
1 GGCACTATTATGTGCTAAAATGGTAAGAAAATCATATTAA-GGTATGGATTTCCAG-ATAG
* ** ** * *
616693 GGCACT-TTGTGTGCTAAAATGAAAAGGGAAGCATACTAAGTGTAT-GATTTTCCAGATAG
1 GGCACTATTATGTGCTAAAATGGTAAGAAAATCATATTAAG-GTATGGA-TTTCCAGATAG
*
616752 AGCACT
1 GGCACT
616758 GATAATGCTA
Statistics
Matches: 230, Mismatches: 49, Indels: 41
0.72 0.15 0.13
Matches are distributed among these distances:
56 1 0.00
57 4 0.02
58 87 0.38
59 133 0.58
60 5 0.02
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (59 bp):
GGCACTATTATGTGCTAAAATGGTAAGAAAATCATATTAAGGTATGGATTTCCAGATAG
Found at i:617342 original size:14 final size:14
Alignment explanation
Indices: 617325--617351 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
617315 TACTGTACAT
617325 TGTTCACTATTCAC
1 TGTTCACTATTCAC
617339 TGTTCACTATTCA
1 TGTTCACTATTCA
617352 TTTTAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.26, G:0.07, T:0.44
Consensus pattern (14 bp):
TGTTCACTATTCAC
Found at i:617930 original size:23 final size:23
Alignment explanation
Indices: 617904--617982 Score: 94
Period size: 23 Copynumber: 3.6 Consensus size: 23
617894 AAAACAAAAT
*
617904 TAAAATAAACAGGCATATAGGAC
1 TAAAATAAACATGCATATAGGAC
* * *
617927 TAAAATAAA-ATGCA-AGA-AAA
1 TAAAATAAACATGCATATAGGAC
617947 TAAAATAAACATGCATATAGGAC
1 TAAAATAAACATGCATATAGGAC
617970 TAAAATAAA-ATGC
1 TAAAATAAACATGC
617983 TTAAAAATAA
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
20 10 0.22
21 7 0.15
22 10 0.22
23 19 0.41
ACGTcount: A:0.58, C:0.10, G:0.13, T:0.19
Consensus pattern (23 bp):
TAAAATAAACATGCATATAGGAC
Found at i:617963 original size:43 final size:44
Alignment explanation
Indices: 617899--617982 Score: 152
Period size: 43 Copynumber: 1.9 Consensus size: 44
617889 AGAAAAAAAC
617899 AAAATTAAAATAAACAGGCATATAGGACTAAAATAAAATGCAAG
1 AAAATTAAAATAAACAGGCATATAGGACTAAAATAAAATGCAAG
*
617943 AAAA-TAAAATAAACATGCATATAGGACTAAAATAAAATGC
1 AAAATTAAAATAAACAGGCATATAGGACTAAAATAAAATGC
617983 TTAAAAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 35 0.90
44 4 0.10
ACGTcount: A:0.60, C:0.10, G:0.12, T:0.19
Consensus pattern (44 bp):
AAAATTAAAATAAACAGGCATATAGGACTAAAATAAAATGCAAG
Found at i:617990 original size:43 final size:42
Alignment explanation
Indices: 617899--617994 Score: 147
Period size: 43 Copynumber: 2.2 Consensus size: 42
617889 AGAAAAAAAC
*
617899 AAAATTAAAATAAACAGGCATATAGGACTAAAATAAAATGCA
1 AAAAATAAAATAAACAGGCATATAGGACTAAAATAAAATGCA
* *
617941 AGAAAATAAAATAAACATGCATATAGGACTAAAATAAAATGCTT
1 A-AAAATAAAATAAACAGGCATATAGGACTAAAATAAAATGC-A
617985 AAAAATAAAA
1 AAAAATAAAA
617995 GCACATTAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
42 1 0.02
43 47 0.96
44 1 0.02
ACGTcount: A:0.61, C:0.08, G:0.10, T:0.20
Consensus pattern (42 bp):
AAAAATAAAATAAACAGGCATATAGGACTAAAATAAAATGCA
Found at i:618061 original size:28 final size:29
Alignment explanation
Indices: 618030--618090 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
618020 TTTAAATTTT
618030 GAAATTAAA-GGCAAAAAT-TAAAATAATA
1 GAAATTAAAGGGCAAAAATGT-AAATAATA
*
618058 GAAATTAAAGGGCAGAAATGTAAATAATA
1 GAAATTAAAGGGCAAAAATGTAAATAATA
618087 GAAA
1 GAAA
618091 CATAAAATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 9 0.30
29 20 0.67
30 1 0.03
ACGTcount: A:0.61, C:0.03, G:0.16, T:0.20
Consensus pattern (29 bp):
GAAATTAAAGGGCAAAAATGTAAATAATA
Found at i:618252 original size:29 final size:30
Alignment explanation
Indices: 618217--618275 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
618207 AAGGGTTAGT
* *
618217 AATTAGAAGTTAGT-AAGTTAGTGGTTAAA
1 AATTAGAAATTAGTAAAGTTAGTAGTTAAA
618246 AATTAGAAATTAGTAAAGTTAGTAGTTAAA
1 AATTAGAAATTAGTAAAGTTAGTAGTTAAA
618276 TTATAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.46, C:0.00, G:0.20, T:0.34
Consensus pattern (30 bp):
AATTAGAAATTAGTAAAGTTAGTAGTTAAA
Found at i:621047 original size:22 final size:24
Alignment explanation
Indices: 621015--621066 Score: 72
Period size: 22 Copynumber: 2.2 Consensus size: 24
621005 CTGAAACATC
621015 ATCAAAATCTGAGTATTGA-C-AG
1 ATCAAAATCTGAGTATTGACCAAG
* *
621037 ATCAAAGTCTGGGTATTGACCAAG
1 ATCAAAATCTGAGTATTGACCAAG
621061 ATCAAA
1 ATCAAA
621067 TTTCGAATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 17 0.65
23 1 0.04
24 8 0.31
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.25
Consensus pattern (24 bp):
ATCAAAATCTGAGTATTGACCAAG
Found at i:621827 original size:14 final size:15
Alignment explanation
Indices: 621791--621828 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
621781 GAAATCATTG
621791 AAAAATTATATAGAA
1 AAAAATTATATAGAA
*
621806 ATAAAATTATGTA-AA
1 A-AAAATTATATAGAA
621821 AAAAATTA
1 AAAAATTA
621829 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAAATTATATAGAA
Found at i:622009 original size:20 final size:18
Alignment explanation
Indices: 621965--622012 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
621955 CAAAACATTT
621965 GTGTTGCGAAAATAAAAC
1 GTGTTGCGAAAATAAAAC
* *
621983 ATGTTGCGAAATTAAAATTC
1 GTGTTGCGAAAATAAAA--C
622003 GTGTTGCGAA
1 GTGTTGCGAA
622013 TTCGAAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.60
20 10 0.40
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (18 bp):
GTGTTGCGAAAATAAAAC
Found at i:622092 original size:20 final size:20
Alignment explanation
Indices: 622005--622117 Score: 86
Period size: 20 Copynumber: 5.6 Consensus size: 20
621995 TAAAATTCGT
* *
622005 GTTGCGAATTCGAAAATCGA-
1 GTTGCGAATTTGTAAATC-AC
* *
622025 GTTACGAATTTG-AAATTCAGT
1 GTTGCGAATTTGTAAA-TCA-C
* *
622046 GTTGTGAATTTGTAAATCGC
1 GTTGCGAATTTGTAAATCAC
***
622066 AACGCGAATTTGTAAATCAC
1 GTTGCGAATTTGTAAATCAC
*
622086 GTTGCGAATTTGGAAATCAC
1 GTTGCGAATTTGTAAATCAC
*
622106 ATTGCGAATTTG
1 GTTGCGAATTTG
622118 ACTTATGTGT
Statistics
Matches: 73, Mismatches: 16, Indels: 8
0.75 0.16 0.08
Matches are distributed among these distances:
19 4 0.05
20 54 0.74
21 12 0.16
22 3 0.04
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (20 bp):
GTTGCGAATTTGTAAATCAC
Found at i:622113 original size:40 final size:41
Alignment explanation
Indices: 622029--622118 Score: 103
Period size: 40 Copynumber: 2.2 Consensus size: 41
622019 AATCGAGTTA
* * * *
622029 CGAATTTGAAATTCAGTGTTGTGAATTTGTAAATCGCAACG
1 CGAATTTGAAATTCAGCGTTGCGAATTTGGAAATCACAACG
**
622070 CGAATTTGTAAA-TCA-CGTTGCGAATTTGGAAATCACATTG
1 CGAATTTG-AAATTCAGCGTTGCGAATTTGGAAATCACAACG
622110 CGAATTTGA
1 CGAATTTGA
622119 CTTATGTGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 1 0.02
40 27 0.64
41 11 0.26
42 3 0.07
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.33
Consensus pattern (41 bp):
CGAATTTGAAATTCAGCGTTGCGAATTTGGAAATCACAACG
Found at i:622149 original size:20 final size:20
Alignment explanation
Indices: 622126--622172 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
622116 TGACTTATGT
*
622126 GTTGCGATTTACAGATTCGC
1 GTTGCGATTTACAGATTCAC
* *
622146 GTTGCTATTTACATATTCAC
1 GTTGCGATTTACAGATTCAC
622166 GTTGCGA
1 GTTGCGA
622173 ATTTGGAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (20 bp):
GTTGCGATTTACAGATTCAC
Found at i:623114 original size:14 final size:14
Alignment explanation
Indices: 623081--623123 Score: 68
Period size: 14 Copynumber: 3.0 Consensus size: 14
623071 CCGCTAACAA
*
623081 CTTTTCACTTCTTC
1 CTTTTCACTTCATC
623095 CTTTTTCACTTCATC
1 C-TTTTCACTTCATC
623110 CTTTTCACTTCATC
1 CTTTTCACTTCATC
623124 GTACTATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 14 0.52
15 13 0.48
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.53
Consensus pattern (14 bp):
CTTTTCACTTCATC
Found at i:625679 original size:20 final size:20
Alignment explanation
Indices: 625650--625688 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
625640 AGTATTGTAC
*
625650 TGTATGAATAGTACCGATAT
1 TGTATAAATAGTACCGATAT
*
625670 TGTATAAATAGTATCGATA
1 TGTATAAATAGTACCGATA
625689 CTATGTGAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (20 bp):
TGTATAAATAGTACCGATAT
Found at i:625767 original size:20 final size:20
Alignment explanation
Indices: 625742--625781 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
625732 GAATGCATGG
625742 GTATCGATACTGCTACAGTA
1 GTATCGATACTGCTACAGTA
*
625762 GTATCGATATTGCTACAGTA
1 GTATCGATACTGCTACAGTA
625782 ATTTCAAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (20 bp):
GTATCGATACTGCTACAGTA
Found at i:632098 original size:21 final size:21
Alignment explanation
Indices: 632065--632122 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 21
632055 GTTATGTGGT
632065 CCTTCGG-GACAAATATGTAGC
1 CCTTCGGTG-CAAATATGTAGC
*
632086 CCTTCGGTGCAAACCTATGTGGC
1 CCTTCGGTGCAAA--TATGTAGC
*
632109 ACTTCGGTGCAAAT
1 CCTTCGGTGCAAAT
632123 TATGAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 12 0.38
22 1 0.03
23 19 0.59
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (21 bp):
CCTTCGGTGCAAATATGTAGC
Found at i:632113 original size:23 final size:23
Alignment explanation
Indices: 632078--632121 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
632068 TCGGGACAAA
*
632078 TATGTAGCCCTTCGGTGCAAACC
1 TATGTAGCACTTCGGTGCAAACC
*
632101 TATGTGGCACTTCGGTGCAAA
1 TATGTAGCACTTCGGTGCAAA
632122 TTATGAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (23 bp):
TATGTAGCACTTCGGTGCAAACC
Found at i:635280 original size:856 final size:865
Alignment explanation
Indices: 633074--635368 Score: 3842
Period size: 856 Copynumber: 2.7 Consensus size: 865
633064 AACCTCTAAA
*
633074 ATGAATGTCCCTAAAGAGCTAAAAAGTCTTGGAGGATTGAATTTAGAGGTGAAGATGAAG-AGGT
1 ATGAATGTCCCTAAAGAGCTAAAAAGTCTTGGAGGATTGAATTTAGAGGTGAAGCTGAAGAAGGT
*
633138 CC-GTTGTCGCCGATATGTGGCTCAATGACTTGAAGGTTATGCTAGAGAATCTCCATTGTTCTGA
66 CCGGTTGTCGCCGATATGTGGCTCAATGACTTGAAGGTTATGCTAGAGAATCTCCATTGTTATG-
633202 AATGGAGAATTGGATGGTGCAGTTTCGTTATTAAGAGGTCAAGCCAGAATTTGGTGGTCGAATGT
130 AATGGAGAATTGGATGGTGCAGTTTCGTTATTAAGAGGTCAAGCCAGAATTTGGTGGTCGAATGT
* * *
633267 GATGATGAGAGCTTCAA-GGATCAGGTGACTTGGCCCTTA-TTCTGGAGGAGTTT-AGAATAAAT
195 GACGATGAGAGCTTCAAGGGATCAGGTGACTTGGCCCTTATTTCTGGAGGAGTTTAATAATAAGT
* * *
633329 ATATAGGGGATCCGTTCATCAGGAAAATAAAACAAAAATTTATGAGTTTAAAAC-AGGGAATCGC
260 ATATAGGGGATCAGTTCATCAGAAAAATAAAA-TAAAATTTATGAGTTTAAAACAAGGGAATCGC
* *
633393 ACGGTGTATGAGTTTGAGTGTGAATTC-ACAAGTT-GAGTCAATTTGCTGTCGAGTTGGTTCCTA
324 ACGGTGTATGAGTTCGAG-GTGAATTCAACAA-TTAGAGTCAATTTGCTGCCGAGTTGGTTCCTA
*
633456 CAGAGAATGACTCTTGTGATTGATTTGTGGAGGGTTTACGCCCCAGATTGAAAGAGTTATTGTTG
387 CAGAGAATGACTCTTGTGATTGGTTTGTGGAGGGTTTACGCCCCAGATTGAAAGAGTTATTGTTG
633521 GTACTCAACCTCTCTTCCTTCCAAGAGGTAGTGAATTGAGCTAAATCTTTGGAGCGAGCTCAAAA
452 GTACTCAACCTCTCTTCCTTCCAAGAGGTAGTGAATTGAGCTAAATCTTTGGAGCGAGCTCAAAA
* * *
633586 TGAAAGATTTACGGAACAAAGGATGCAATGGAATAAGACATCTGGTGCGTCATCCGGTTCTTCTC
517 TGAAAGATTTACGGAACAAATGATGCAATGGAATAAGACATCTGGTGCGTCGTTCGGTTCTTCTC
*
633651 AATCAAAGAAGAGTAGAGGGTTCGAGTTCTGGACCTCAGACTAGAGTAGAATCTACAGCATCCTC
582 AATCAAAGAAGAGTAGAGGGTTCGAGTTCTCGACCTCAGACTAGAGTAGAATCTACAGCATCCTC
* * *
633716 CGGTAGATGATCAAATCAGGGAAGAGAAAACAAACATATTCGGTGTAATCGGAGTGGATAAGCCG
647 CGGTAGAGGATCAAATCAGGGAAAAGAAAACAAACATATTCGGTGGAATCGGAGTGGATAAGCCG
633781 AAATTATGCCAACACTGTGGGAAAAACCATAGTGGAGTTTATACAAAGGGTCTCCGGAGCTTGCA
712 AAATTATGCCAACACTGTGGGAAAAACCATAGTGGAGTTTATACAAAGGGTCTCCGGAGCTTGCA
*
633846 TTAAGTGTGGAGAGGCAAGGCATTTTATTCGAGATTGTCCATTGATGACGGGAGAACCTTCCCAG
777 TTAAGTGTGGAGAGGCAAGGCATTTTATTCGAGATTGTCCATTGATGACGAGAGAACCTTCCCAG
*
633911 ACAGAAAGATCCGCGGCTGCTCAT
842 ACAGAAAGATCCACGGCTGCTCAT
* * *
633935 ATGAATGTCCCAAAAGAGCTAAAAAGTCTAGGAGGATTGAATTTAGA-GTAAAGCTGAAGAAGGT
1 ATGAATGTCCCTAAAGAGCTAAAAAGTCTTGGAGGATTGAATTTAGAGGTGAAGCTGAAGAAGGT
* *
633999 CTGGTTGTCGCCGATATGT-GCTCAATGACTTGAAGGTTATGCTAGAGAATCTCCATTGTTATAA
66 CCGGTTGTCGCCGATATGTGGCTCAATGACTTGAAGGTTATGCTAGAGAATCTCCATTGTTATGA
* * *
634063 ATGGAGAATTGGATGGTGCCGTTTTGTTATTAAGAGGTCAAGCCATAATTTGGTGGTCGAATGTG
131 ATGGAGAATTGGATGGTGCAGTTTCGTTATTAAGAGGTCAAGCCAGAATTTGGTGGTCGAATGTG
*
634128 ACGATGAGAGCTTTAAGGGATCAGGTGACTTGGCCCTTATTTCTGGAGGAGTTTAATAATAAGT-
196 ACGATGAGAGCTTCAAGGGATCAGGTGACTTGGCCCTTATTTCTGGAGGAGTTTAATAATAAGTA
*
634192 TATAGGGGATCAGTTCATCA-AGAAAT-AAAT-AAATTTATGA-TTTAAAACAAGGGAATCGCAC
261 TATAGGGGATCAGTTCATCAGAAAAATAAAATAAAATTTATGAGTTTAAAACAAGGGAATCGCAC
* *
634253 GGTGTATGAGTTCGAGTGTGAATTCAACAAGTAGAGTCAATTTGCTGCTGAGTTGGTTCCTACAG
326 GGTGTATGAGTTCGAG-GTGAATTCAACAATTAGAGTCAATTTGCTGCCGAGTTGGTTCCTACAG
634318 AGAATGACTCTTGTGATTGGTTTGTGGAGGGTTTACGCCCCAGATTGAAAGAGTTATTGTTGGTA
390 AGAATGACTCTTGTGATTGGTTTGTGGAGGGTTTACGCCCCAGATTGAAAGAGTTATTGTTGGTA
*
634383 CTCAACCTCTCTTCCTTCCAAGAGGTAGTGAATTAAGCTAAATCTTTGGAGCGAGCTCAAAATGA
455 CTCAACCTCTCTTCCTTCCAAGAGGTAGTGAATTGAGCTAAATCTTTGGAGCGAGCTCAAAATGA
*
634448 AAGATTTACGGAACAAATGATGCAATAGAATAAGACATCTGGTGCGTCGTTCGGTTCTTCTCAAT
520 AAGATTTACGGAACAAATGATGCAATGGAATAAGACATCTGGTGCGTCGTTCGGTTCTTCTCAAT
* *
634513 CAAAGAAGAGTGGA-GGTTCGAGTTCTCGACCTCAGACTAGAGTAGAATCTACAGTATCCTCC-G
585 CAAAGAAGAGTAGAGGGTTCGAGTTCTCGACCTCAGACTAGAGTAGAATCTACAGCATCCTCCGG
*
634576 TAGAGGATCAAATCAGGGAAAAGGAAAA-AAACATATTCGGTGGAATTTGGAGTGGAT-AGCCGA
650 TAGAGGATCAAATCAGGGAAAA-GAAAACAAACATATTCGGTGGAA-TCGGAGTGGATAAGCCGA
634639 AATTATGCCAACACTGT-GGAAAAACCATAGTGGAGTTTATA-AAA-GGTCTCCGGAGCTTGCAT
713 AATTATGCCAACACTGTGGGAAAAACCATAGTGGAGTTTATACAAAGGGTCTCCGGAGCTTGCAT
634701 TAAGTGT-GAGAGGCAAGGCATTTTATTCGAGATTGTCCATTGATGACGAGAGAACCTTCCCAGA
778 TAAGTGTGGAGAGGCAAGGCATTTTATTCGAGATTGTCCATTGATGACGAGAGAACCTTCCCAGA
*
634765 CAGAAAGATCCACGGCTGCTCCT
843 CAGAAAGATCCACGGCTGCTCAT
634788 ATGAATGTCCCTAAAGAGCTAAAAAGTCTTGGAGGGATTGAATTTAGAGGTGAAGCTGAAGAAGG
1 ATGAATGTCCCTAAAGAGCTAAAAAGTCTTGGA-GGATTGAATTTAGAGGTGAAGCTGAAGAAGG
*
634853 TCCGGTTGTCGCCGATATGTGGCTCAATGACTTGAAGTTTATGCTAGAGAATCTCCATTGTT-TG
65 TCCGGTTGTCGCCGATATGTGGCTCAATGACTTGAAGGTTATGCTAGAGAATCTCCATTGTTATG
634917 AATGGAGAAATTGGATGGTGCAGTTTCGTTATTAAGAGGTCAAGCCAGAATTTGGTGGTCGAATG
130 AATGGAG-AATTGGATGGTGCAGTTTCGTTATTAAGAGGTCAAGCCAGAATTTGGTGGTCGAATG
*
634982 TGACGATGAGAGCTTCAAGGGATCAGGTGATTTGGCCCTTATTTCTGGAGGAGTTTAATAATAAG
194 TGACGATGAGAGCTTCAAGGGATCAGGTGACTTGGCCCTTATTTCTGGAGGAGTTTAATAATAAG
635047 TATATAGGGGATCAGTTCATCAGAAAAATAAAATAAGAATTTATGAGTTTAAAACAAGGGAATCG
259 TATATAGGGGATCAGTTCATCAGAAAAATAAAATAA-AATTTATGAGTTTAAAACAAGGGAATCG
*
635112 CACGGTGTATGAGTTCGA-GTGAATTCAACAATTAGAGTTAATTTGCTGCCGAGTTGGTTCCTAC
323 CACGGTGTATGAGTTCGAGGTGAATTCAACAATTAGAGTCAATTTGCTGCCGAGTTGGTTCCTAC
* *
635176 A-AGAATGACTCTT-TGATTGGTTTGTGGAGGGTTTATGCCCC-TATTGAAAGAGTTATTGTTGG
388 AGAGAATGACTCTTGTGATTGGTTTGTGGAGGGTTTACGCCCCAGATTGAAAGAGTTATTGTTGG
* *
635238 TACTTAACCTCTCTTCCTTCCAAGA-GTAGCGAATTGAGCTAAATCTTTGGAGCGAGCTCAAAAT
453 TACTCAACCTCTCTTCCTTCCAAGAGGTAGTGAATTGAGCTAAATCTTTGGAGCGAGCTCAAAAT
* * * *
635302 GAAAGATTTATGGAACAAATGATGCAATGGAATAAGACATCTAGTAC-TCG-TCCGTTCTTCTCA
518 GAAAGATTTACGGAACAAATGATGCAATGGAATAAGACATCTGGTGCGTCGTTCGGTTCTTCTCA
635365 ATCA
583 ATCA
Statistics
Matches: 1351, Mismatches: 63, Indels: 47
0.92 0.04 0.03
Matches are distributed among these distances:
853 108 0.08
854 55 0.04
855 48 0.04
856 262 0.19
857 132 0.10
858 140 0.10
859 252 0.19
860 135 0.10
861 127 0.09
862 85 0.06
863 7 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (865 bp):
ATGAATGTCCCTAAAGAGCTAAAAAGTCTTGGAGGATTGAATTTAGAGGTGAAGCTGAAGAAGGT
CCGGTTGTCGCCGATATGTGGCTCAATGACTTGAAGGTTATGCTAGAGAATCTCCATTGTTATGA
ATGGAGAATTGGATGGTGCAGTTTCGTTATTAAGAGGTCAAGCCAGAATTTGGTGGTCGAATGTG
ACGATGAGAGCTTCAAGGGATCAGGTGACTTGGCCCTTATTTCTGGAGGAGTTTAATAATAAGTA
TATAGGGGATCAGTTCATCAGAAAAATAAAATAAAATTTATGAGTTTAAAACAAGGGAATCGCAC
GGTGTATGAGTTCGAGGTGAATTCAACAATTAGAGTCAATTTGCTGCCGAGTTGGTTCCTACAGA
GAATGACTCTTGTGATTGGTTTGTGGAGGGTTTACGCCCCAGATTGAAAGAGTTATTGTTGGTAC
TCAACCTCTCTTCCTTCCAAGAGGTAGTGAATTGAGCTAAATCTTTGGAGCGAGCTCAAAATGAA
AGATTTACGGAACAAATGATGCAATGGAATAAGACATCTGGTGCGTCGTTCGGTTCTTCTCAATC
AAAGAAGAGTAGAGGGTTCGAGTTCTCGACCTCAGACTAGAGTAGAATCTACAGCATCCTCCGGT
AGAGGATCAAATCAGGGAAAAGAAAACAAACATATTCGGTGGAATCGGAGTGGATAAGCCGAAAT
TATGCCAACACTGTGGGAAAAACCATAGTGGAGTTTATACAAAGGGTCTCCGGAGCTTGCATTAA
GTGTGGAGAGGCAAGGCATTTTATTCGAGATTGTCCATTGATGACGAGAGAACCTTCCCAGACAG
AAAGATCCACGGCTGCTCAT
Done.