genome.fa.s8939.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008939.1 Hibiscus syriacus cultivar Beakdansim tig00112257_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68171

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2359--2385	13	2.1	13	100	0	54	55	0	0	44	0.99
4439--4473	19	1.9	19	88	11	56	28	0	2	68	1.04
8835--8885	9	5.4	9	88	2	57	11	5	0	82	0.83
8858--8885	5	5.6	5	100	0	56	17	0	0	82	0.68
8923--9159	39	6.5	36	69	21	138	46	2	7	43	1.44
8923--9041	38	3.2	36	77	13	107	48	0	6	43	1.35
8980--9122	67	2.2	64	86	6	189	45	2	7	44	1.47
9033--9081	24	2.0	24	84	11	64	44	4	8	42	1.53
9031--9081	26	2.0	25	92	3	84	45	3	7	43	1.51
8941--9145	105	1.9	106	82	8	258	47	2	7	42	1.46
9122--9167	22	2.0	22	83	12	56	47	2	4	45	1.34
9155--9266	2	58.5	2	91	8	189	50	0	0	49	1.00
9251--9335	39	2.2	39	85	6	109	47	1	8	43	1.41
9317--9409	37	2.5	38	82	6	111	40	2	10	46	1.51
9442--9504	11	5.2	12	78	14	51	34	1	0	63	1.04
9434--9504	18	3.8	18	79	17	81	32	1	0	66	1.01
10024--10065	22	1.9	22	85	9	59	57	26	9	7	1.56
12450--14123	835	2.0	835	99	0	3303	36	19	17	26	1.94
15449--15650	99	2.0	99	90	0	314	34	15	17	32	1.92
17091--17810	83	8.5	83	80	5	743	36	18	18	27	1.94
17091--17840	168	4.4	168	85	2	878	36	18	17	27	1.94
17693--18183	260	1.9	260	80	6	575	34	18	19	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18468--18569	48	2.1	48	96	0	186	33	20	16	29	1.95
18703--18737	14	2.3	16	90	9	56	17	0	0	82	0.66
18842--19033	36	5.4	34	75	15	158	43	3	6	45	1.47
18838--19354	39	13.8	35	77	14	282	44	2	7	44	1.47
18836--19297	39	12.1	38	81	10	398	45	3	6	44	1.46
19019--19050	2	16.5	2	93	6	57	53	0	0	46	1.00
18876--19297	77	5.5	74	78	12	314	45	3	6	44	1.46
19267--19370	37	2.9	34	77	14	95	39	0	12	47	1.48
19878--19905	14	2.0	14	100	0	56	42	28	14	14	1.84
20568--20595	3	9.3	3	100	0	56	35	0	0	64	0.94
20681--20712	9	3.6	9	100	0	64	12	0	0	87	0.54
20686--20816	59	2.3	56	80	17	137	19	7	2	70	1.23
21274--21316	2	21.5	2	100	0	86	48	0	0	51	1.00
21455--21511	25	2.3	25	96	0	105	24	7	5	63	1.41
27359--27449	31	2.9	31	79	9	105	34	21	18	25	1.96
32308--32381	31	2.4	31	81	0	94	37	20	16	25	1.93
32633--32669	2	18.0	2	88	5	56	51	2	0	45	1.15
34567--34745	24	7.2	24	72	15	71	47	5	6	41	1.50
34526--34811	151	1.9	152	80	10	343	45	4	8	41	1.54
34648--34763	40	2.9	40	84	6	130	46	6	6	41	1.53
34688--34827	20	6.8	21	67	23	59	46	3	7	42	1.50
34736--34794	18	3.1	18	72	18	57	44	3	6	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34673--34794	40	3.1	40	87	8	153	45	4	5	43	1.49
34767--34811	13	3.5	13	82	17	51	44	2	11	42	1.52
35128--35189	24	2.6	24	89	0	88	32	17	12	37	1.88
35335--35505	11	13.8	11	69	22	85	41	4	8	45	1.54
35335--35501	24	6.7	24	75	14	133	41	4	8	45	1.55
35508--35702	8	28.0	8	70	21	63	38	1	1	58	1.14
35511--35619	20	5.8	20	73	24	71	38	0	1	59	1.08
35511--35700	27	7.4	27	71	20	142	38	1	1	58	1.15
35532--35623	47	2.0	46	91	2	148	38	0	2	59	1.09
35622--35669	17	2.9	17	84	9	55	35	4	0	60	1.16
42039--42078	21	1.9	21	89	0	62	25	40	25	10	1.86
47401--47440	19	2.1	19	85	0	53	50	7	7	35	1.59
47541--47575	12	2.8	13	91	8	63	37	5	8	48	1.58
52616--52658	20	2.2	20	86	0	59	32	18	13	34	1.90
57570--57612	20	2.2	20	91	0	68	32	20	13	32	1.92
62080--62136	21	2.7	21	94	0	105	28	24	24	22	2.00
66265--66305	20	2.1	19	90	4	64	31	26	0	41	1.56
66267--66306	10	4.0	10	84	12	55	32	27	0	40	1.57
66426--66665	101	2.3	106	86	6	355	34	8	12	45	1.72

Tables:   1

The End!