genome.fa.s894.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000894.1 Hibiscus syriacus cultivar Beakdansim tig00001756_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126325

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3354--3388	7	5.0	7	92	0	52	31	25	25	17	1.97
4547--4588	2	22.0	2	90	9	70	47	0	0	52	1.00
5052--5123	22	3.2	22	98	2	135	45	4	13	36	1.63
5978--6002	12	2.1	12	100	0	50	64	0	0	36	0.94
7183--7236	2	28.0	2	92	7	94	48	0	0	51	1.00
12733--12774	19	2.3	19	80	8	52	57	4	0	38	1.20
16428--16866	171	2.6	171	91	2	704	34	16	22	25	1.95
20354--20414	24	2.4	25	76	15	72	49	0	6	44	1.28
20361--20401	19	2.2	19	95	0	73	48	0	7	43	1.30
27683--27739	28	2.0	28	89	0	87	28	22	19	29	1.98
36915--36961	23	2.0	23	100	0	94	29	31	29	8	1.87
37855--37984	60	2.2	61	80	5	149	38	6	23	32	1.79
37868--38011	60	2.4	59	79	10	139	40	5	20	32	1.76
38598--38656	30	2.0	30	96	0	109	37	0	0	62	0.95
54050--54079	16	1.9	16	93	6	53	50	6	3	40	1.45
54207--54279	31	2.3	32	85	2	94	27	34	23	15	1.94
56726--56770	23	1.9	24	86	4	65	35	20	22	22	1.96
58526--58598	23	3.2	23	78	0	74	41	16	17	24	1.90
58593--58650	30	2.0	30	81	15	70	63	13	6	15	1.49
63135--63177	16	2.6	18	79	20	58	2	30	0	67	1.03
64902--64929	13	2.2	13	100	0	56	57	0	0	42	0.99
65279--65326	2	24.0	2	91	0	78	0	50	4	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69419--69475	21	2.7	21	97	0	105	31	0	8	59	1.28
69581--69618	2	19.0	2	100	0	76	50	0	0	50	1.00
73111--73225	2	57.5	2	100	0	230	50	0	0	49	1.00
84300--84339	21	1.9	21	89	0	62	25	40	25	10	1.86
91703--91762	28	2.1	29	87	3	86	35	20	15	30	1.93
92052--92076	13	1.9	13	100	0	50	48	0	0	52	1.00
92788--92833	23	2.0	23	95	0	83	34	19	4	41	1.71
96469--96572	53	2.0	53	88	0	154	25	17	25	32	1.97
97024--97089	29	2.3	29	87	10	91	50	0	0	50	1.00
97063--97117	21	2.5	22	88	5	85	47	0	0	52	1.00
97062--97117	19	2.8	20	84	10	69	46	0	0	53	1.00
100165--100214	18	2.8	18	75	0	55	12	40	8	40	1.72
101234--101290	27	2.1	27	96	0	105	21	7	10	61	1.52
102123--102317	49	4.0	49	93	1	320	26	18	11	43	1.85
102123--102317	97	2.0	98	91	1	320	26	18	11	43	1.85
104858--104891	2	17.0	2	87	0	50	0	47	2	50	1.16
107930--108002	19	3.8	19	100	0	146	26	16	35	21	1.94
107822--107960	64	2.2	64	84	1	170	30	13	23	32	1.93
108030--108067	20	1.9	20	88	0	58	18	13	34	34	1.89
110671--110713	21	2.0	21	81	9	50	25	23	23	27	2.00
116285--116322	20	1.9	20	94	0	67	18	15	34	31	1.92
121470--121539	3	23.3	3	88	5	52	47	0	52	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122636--122669	16	2.1	16	88	0	50	14	0	20	64	1.28
122732--122775	22	2.0	22	86	0	61	22	11	25	40	1.87

Tables:   1

The End!