genome.fa.s8941.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008941.1 Hibiscus syriacus cultivar Beakdansim tig00112260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  348581

Tables:   1   2   

This is table  1  of  2  ( 122 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4460--4575	59	2.0	58	83	5	144	31	16	5	46	1.69
5902--5952	28	1.9	27	84	11	70	58	5	5	29	1.45
7912--7953	21	2.0	21	86	4	59	21	0	0	78	0.75
10731--10765	15	2.4	15	90	4	54	82	2	5	8	0.91
10724--10769	25	2.0	23	83	12	58	82	2	6	8	0.91
13304--13419	59	2.0	58	84	5	153	32	16	5	45	1.69
26939--27107	60	2.8	60	79	9	175	38	6	24	30	1.81
27261--27318	29	2.0	29	89	0	89	13	36	25	24	1.92
27374--27458	33	2.6	33	90	0	125	27	28	36	8	1.85
27494--27526	14	2.4	14	94	0	57	6	30	39	24	1.79
31699--31792	39	2.4	39	98	0	179	21	17	35	26	1.95
69279--69309	16	1.9	16	100	0	62	41	0	0	58	0.98
74373--74721	67	5.2	66	91	2	522	20	21	20	37	1.95
79696--79901	106	1.9	106	96	0	376	29	19	16	34	1.94
94519--94575	21	2.9	21	80	17	77	75	0	0	24	0.80
94523--94575	13	4.2	12	75	17	54	73	0	0	26	0.83
94612--94650	12	3.1	12	85	7	51	53	5	0	41	1.23
94612--94651	14	3.1	13	85	7	55	55	5	0	40	1.22
96167--97361	105	11.4	104	96	0	2041	23	17	25	33	1.96
98134--98187	14	4.1	13	83	11	74	0	3	9	87	0.67
98136--98186	26	2.0	26	92	7	86	0	3	9	86	0.70
98136--98188	13	4.0	13	83	13	72	0	5	9	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105307--105353	12	3.5	13	75	18	51	70	8	6	14	1.32
107467--107500	10	3.4	10	87	0	50	73	0	5	20	1.04
108267--108374	55	2.0	53	92	3	180	30	13	15	39	1.87
108815--108863	18	2.8	18	81	15	66	73	0	0	26	0.83
108820--108866	9	5.4	9	80	14	55	70	0	0	29	0.88
117012--117083	19	3.7	19	78	10	76	76	0	5	18	0.97
117004--117083	11	6.7	11	70	24	56	75	1	5	18	1.06
118345--118374	12	2.5	12	94	0	51	13	26	26	33	1.93
118402--118427	5	5.2	5	100	0	52	80	0	0	19	0.71
118418--118457	19	2.2	18	86	4	53	60	2	2	35	1.24
118439--118748	38	8.5	38	73	15	183	47	7	3	40	1.50
118569--118748	74	2.4	72	84	7	227	47	7	3	42	1.47
118608--118786	74	2.4	74	86	4	234	45	6	3	44	1.48
118608--118814	74	2.8	73	83	8	213	44	7	3	43	1.51
119790--119814	10	2.5	10	100	0	50	28	0	0	72	0.86
119826--119865	20	2.0	20	85	0	53	35	15	5	45	1.68
123690--123774	34	2.5	34	96	0	152	15	24	24	35	1.94
123796--123853	22	2.6	22	80	0	71	34	17	32	15	1.91
123871--123920	23	2.2	23	85	0	64	18	22	36	24	1.95
124371--124729	172	2.1	173	90	1	560	39	5	18	37	1.72
126945--127038	42	2.2	42	86	3	127	51	4	4	40	1.41
126985--127281	14	20.9	14	72	16	118	50	5	3	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126991--127246	8	34.8	8	70	21	150	50	5	3	40	1.42
126965--127282	28	11.2	28	72	13	145	50	5	3	40	1.41
127109--127230	37	3.3	37	93	3	185	50	5	4	39	1.45
130629--130675	18	2.6	18	100	0	94	23	36	14	25	1.93
131078--131181	43	2.4	43	96	0	190	27	26	25	19	1.99
132181--132237	25	2.4	24	77	11	64	57	5	5	31	1.43
135939--136000	3	20.7	3	100	0	124	0	33	0	66	0.92
138002--138051	25	2.0	25	84	7	66	24	2	6	68	1.23
138007--138069	30	2.2	29	84	15	80	28	0	4	66	1.12
138100--138157	22	2.7	22	87	10	77	29	3	0	67	1.07
138119--138230	16	7.1	15	76	18	77	23	3	0	72	1.06
138162--138218	29	1.9	30	82	10	73	17	1	1	78	0.91
138115--138219	50	2.2	50	83	10	139	23	1	0	73	0.99
144362--144436	30	2.5	31	86	6	109	49	8	10	32	1.66
146938--147006	23	3.0	23	86	0	93	28	11	14	44	1.80
147209--147248	21	1.9	21	89	0	62	55	15	7	22	1.65
149997--150107	55	2.0	55	94	5	197	31	9	24	35	1.86
150384--150427	12	3.7	12	87	0	61	45	2	2	50	1.27
153042--153183	68	2.1	67	93	2	241	54	2	9	33	1.45
158947--159043	6	16.2	6	100	0	194	34	49	16	0	1.46
159041--159084	5	8.8	5	100	0	88	20	38	40	0	1.53
160910--160960	27	1.9	26	84	4	66	39	3	3	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161111--161203	29	3.1	29	78	6	96	39	10	8	40	1.71
165533--165588	4	14.2	4	86	5	55	28	0	0	71	0.86
165550--165593	21	2.1	21	86	0	61	25	0	0	75	0.81
165533--165593	25	2.4	26	84	10	74	27	0	0	72	0.85
165664--165727	33	1.9	33	87	0	92	45	15	12	26	1.82
165868--165923	21	2.7	21	81	10	62	37	0	0	62	0.95
168802--168865	12	5.0	13	80	16	71	76	4	17	1	1.03
168815--168866	27	2.0	25	92	7	86	75	3	17	3	1.11
168940--169077	69	2.0	69	90	2	215	37	21	14	26	1.92
169997--170091	32	2.9	32	88	1	145	30	10	22	36	1.88
169990--170105	32	3.6	32	84	2	135	29	12	23	35	1.91
170773--170871	43	2.3	43	98	0	189	37	24	18	20	1.94
171331--171540	37	5.9	36	80	8	207	27	21	13	37	1.91
171447--171497	15	3.3	15	71	28	52	23	11	17	47	1.81
171538--171594	29	2.0	29	92	0	96	36	15	12	35	1.85
171604--171861	83	3.1	83	86	4	335	31	26	17	23	1.97
172205--172278	8	8.9	8	82	10	69	25	0	0	74	0.82
172205--172278	12	5.9	12	80	12	69	25	0	0	74	0.82
172214--172270	28	2.1	27	80	9	62	26	0	0	73	0.83
172331--172396	33	2.0	33	96	0	123	40	21	10	27	1.86
172550--172596	8	5.5	8	81	18	51	44	0	0	55	0.99
172974--172999	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176299--176366	31	2.2	31	97	0	127	57	14	2	25	1.52
179464--179502	6	6.5	6	100	0	78	33	48	17	0	1.48
189992--190027	3	12.0	3	93	0	63	0	30	0	69	0.89
196981--197018	2	19.0	2	100	0	76	50	0	0	50	1.00
205623--205652	3	10.0	3	92	0	51	0	36	0	63	0.95
207306--207355	21	2.4	21	93	0	82	40	30	6	24	1.79
212524--212551	4	7.0	4	100	0	56	25	0	25	50	1.50
228079--228106	2	14.0	2	100	0	56	50	0	0	50	1.00
230733--230876	19	7.2	20	72	9	116	20	21	21	36	1.96
230736--230876	40	3.5	40	97	0	255	20	21	21	36	1.96
231227--231283	19	2.7	22	81	15	84	36	28	3	31	1.74
231285--231338	20	2.6	21	85	11	76	20	18	25	35	1.95
233346--233375	7	4.3	7	91	0	51	56	0	0	43	0.99
259050--259083	6	5.7	6	86	13	52	50	17	14	17	1.79
259265--259295	14	2.3	14	94	5	55	35	3	25	35	1.72
262010--263518	377	4.0	377	97	0	2804	39	17	9	32	1.83
270558--270622	22	3.1	22	78	12	75	46	1	0	52	1.10
270588--270634	22	2.0	22	88	8	67	48	0	0	51	1.00
272465--272515	21	2.4	21	83	6	59	37	7	7	47	1.62
272918--272954	14	2.6	14	95	0	65	24	13	35	27	1.93
273271--273354	44	1.9	44	95	0	150	46	9	14	29	1.76
276563--276604	15	2.7	15	92	3	66	4	4	23	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291927--291958	16	2.0	16	100	0	64	18	18	12	50	1.78
295028--295085	2	29.0	2	87	6	82	48	0	3	48	1.18
297130--297173	17	2.5	18	81	7	54	50	2	0	47	1.13
299872--299924	26	2.1	24	83	13	63	45	3	5	45	1.45
308339--308401	21	2.9	21	83	4	81	20	33	25	20	1.97
315504--315567	28	2.3	29	86	10	89	37	4	17	40	1.70
318567--318606	20	2.1	19	86	13	55	2	7	22	67	1.28
325439--325748	159	2.0	157	88	3	444	17	25	12	44	1.83
332329--332491	82	2.0	81	86	1	227	42	15	12	29	1.84
332451--332522	35	2.0	36	89	2	110	40	22	9	27	1.85

Tables:   1   2