Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01008941.1 Hibiscus syriacus cultivar Beakdansim tig00112260_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 348581
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 2 of 2

Found at i:336362 original size:21 final size:21

Alignment explanation


    Indices: 336337--336376  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

     336327 GTAACTTCGC

                                 
     336337 GACCAAGTTTAACAGTTTGGG
          1 GACCAAGTTTAACAGTTTGGG

                        *      
     336358 GACCAAGTTTAATAGTTTG
          1 GACCAAGTTTAACAGTTTG

     336377 AGGTCAACTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33


Consensus pattern (21 bp):   
GACCAAGTTTAACAGTTTGGG

Found at i:337370 original size:18 final size:18

Alignment explanation


    Indices: 337343--337381  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

     337333 TGCTTTTTTT

                 *      *     
     337343 TTTCTCTATTTCCTTTCA
          1 TTTCTATATTTCATTTCA

                       *      
     337361 TTTCTATATTTTATTTCA
          1 TTTCTATATTTCATTTCA

               
     337379 TTT
          1 TTT

     337382 TCCAACTTCA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67


Consensus pattern (18 bp):   
TTTCTATATTTCATTTCA

Done.