Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008942.1 Hibiscus syriacus cultivar Beakdansim tig00112261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2383254
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 11
Found at i:4429 original size:19 final size:17
Alignment explanation
Indices: 4387--4435 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
4377 TATTTTCTCT
4387 AAATTCAATTTA-TTTG
1 AAATTCAATTTATTTTG
*
4403 AGATTCAATTTATTTTCG
1 AAATTCAATTTATTTT-G
*
4421 AAAATTCAACTTATT
1 -AAATTCAATTTATT
4436 CTTTTATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 11 0.41
17 3 0.11
18 1 0.04
19 12 0.44
ACGTcount: A:0.37, C:0.10, G:0.06, T:0.47
Consensus pattern (17 bp):
AAATTCAATTTATTTTG
Found at i:5619 original size:12 final size:12
Alignment explanation
Indices: 5602--5632 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
5592 TATCCATGTT
*
5602 GAATTTTGACAG
1 GAATTTCGACAG
5614 GAATTTCGACAG
1 GAATTTCGACAG
5626 GAATTTC
1 GAATTTC
5633 AAAGATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (12 bp):
GAATTTCGACAG
Found at i:5850 original size:24 final size:23
Alignment explanation
Indices: 5813--5857 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
5803 GTTCATAATG
5813 AGAAGAATTCATAATAAGAAGGA
1 AGAAGAATTCATAATAAGAAGGA
*
5836 AGAAGAAGTTCATAATGAGAAG
1 AGAAGAA-TTCATAATAAGAAG
5858 AATTTGTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.53, C:0.04, G:0.24, T:0.18
Consensus pattern (23 bp):
AGAAGAATTCATAATAAGAAGGA
Found at i:6100 original size:116 final size:113
Alignment explanation
Indices: 5658--6329 Score: 879
Period size: 113 Copynumber: 5.9 Consensus size: 113
5648 GATTAAAATC
* * * * * *
5658 CATCATTCGGTGGATCAGCAGTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGGAGAAGGA
1 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * * *
5723 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATT
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
*** * * * * *
5771 CATCACCCGGTGGATCAGCAGTGCCAGGTAGAGTTCATAATGAGAAGAATTCATAAT-AAGAAGG
1 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCAT-CTGAAGAAGG
* ** *
5835 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATC
65 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
* * * * * *
5884 CATCACTTGATGGATCAGCTTTTCCAGAG-AAAATTCATAATGAGAAGAACTCATCTGAAGAAGG
1 CATCATTTGATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
*
5948 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTTTGAATT
65 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
* *
5997 CATCATTTGATGGATCAACATTACGAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
1 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAA--C-TCATCTGAAGAA
*
6062 GGAAGAAGAAGTTCATAATGAGAAAAATTTGTTCAACCTTTTGTTTGAATT
63 GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
*
6113 CATCATTTGATGGATCAACATTGCCATGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
1 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAA--C-TCATCTGAAGAA
*
6178 GGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTGAATT
63 GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
*
6229 CATCATTTGATGGATCAACATTGCTAGGTAGAGTTCATAATGAGAAGAACTCATCT---GAA-GA
1 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * **
6290 AGAAGAAGTTAACAATGAGAAGAGCTTGTTCAACCTTTTG
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
6330 CATAATTCTA
Statistics
Matches: 506, Mismatches: 46, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
109 37 0.07
110 3 0.01
112 2 0.00
113 241 0.48
114 3 0.01
115 1 0.00
116 219 0.43
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (113 bp):
CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
Found at i:6472 original size:116 final size:116
Alignment explanation
Indices: 6260--6643 Score: 556
Period size: 116 Copynumber: 3.3 Consensus size: 116
6250 TGCTAGGTAG
*
6260 AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTAACAATGAGAAGAGCTTGTTCAACC
1 AGTTCATAATGAGAAGAACTCATCTGAAG-AGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACC
*
6325 TTTTGCATAATTCTATCACAGAAGGAGATAGATTAGCATCAGTTTTCCAGAGAA
65 TTTTGCATAATTCTATCACAGAAGGAAATAGATTAGCATCA--TTTCCAGAGAA
6379 AGTTCATAATGAGAAGAA-TCATCTGAAGAGAAGAAGTTCACAATGA-AAGAGCTTGTTCAACCT
1 AGTTCATAATGAGAAGAACTCATCTGAAGAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCT
*
6442 TTTGCATAATTCTATCACAGAAGGATATAGATTAGCATCACCCTTTCCAGAGAA
66 TTTGCATAATTCTATCACAGAAGGAAATAGATTAGCATCA---TTTCCAGAGAA
*
6496 AGTTCATAATGAGAAGAACTCATCTGAAGAGTAAGAAGTTCATAATGAGAAGAGCTTGTTCAACC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAG-AAGAAGTTCACAATGAGAAGAGCTTGTTCAACC
* * * * * * * ** *
6561 TTTTGAATGACTCTATCACATAAGGAAATAGGTCAACATCATCCCCAGCGGAA
65 TTTTGCATAATTCTATCACAGAAGGAAATAGATTAGCATCATTTCCAG-AGAA
6614 AGTTCATAATGAGAAGAACTCATCTGAAGA
1 AGTTCATAATGAGAAGAACTCATCTGAAGA
6644 ATGAGAAGAA
Statistics
Matches: 244, Mismatches: 16, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
116 56 0.23
117 51 0.21
118 55 0.23
119 33 0.14
120 49 0.20
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (116 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCT
TTTGCATAATTCTATCACAGAAGGAAATAGATTAGCATCATTTCCAGAGAA
Found at i:6806 original size:3 final size:3
Alignment explanation
Indices: 6800--6870 Score: 72
Period size: 3 Copynumber: 23.7 Consensus size: 3
6790 TTTTTTTTAA
* * * *
6800 TAT TAT T-T ATAT TAT CAT TAT TAT TAT AAA TAT TAT TAT TAA TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
6845 TAT TTT TAT TAA TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
6871 CAAACAGGCC
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
2 1 0.02
3 52 0.96
4 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:6807 original size:15 final size:15
Alignment explanation
Indices: 6789--6870 Score: 82
Period size: 15 Copynumber: 5.7 Consensus size: 15
6779 TTTTTTCTTC
*
6789 ATTTTTTTTAATATT
1 ATTTTTATTAATATT
*
6804 ATTTATATT-ATCATT
1 ATTTTTATTAAT-ATT
*
6819 ATTATTA-TAA-A-T
1 ATTTTTATTAATATT
*
6831 ATTATTATTAATATT
1 ATTTTTATTAATATT
6846 ATTTTTATTAATATT
1 ATTTTTATTAATATT
*
6861 ATTATTATTA
1 ATTTTTATTA
6871 CAAACAGGCC
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
12 8 0.14
13 4 0.07
14 4 0.07
15 40 0.71
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTTTTATTAATATT
Found at i:6817 original size:27 final size:28
Alignment explanation
Indices: 6787--6867 Score: 78
Period size: 27 Copynumber: 2.9 Consensus size: 28
6777 ATTTTTTTCT
*
6787 TCATTTTTTTTAATATTATTTA-TATTA
1 TCATTTTTTTTAATATTATTTATTAATA
*
6814 TCATTATTATTATAAATATTA-TTATTAATA
1 TCATT-TT-TT-TTAATATTATTTATTAATA
* *
6844 TTATTTTTATTAATATTA-TTATTA
1 TCATTTTTTTTAATATTATTTATTA
6868 TTACAAACAG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
27 19 0.42
28 3 0.07
29 7 0.16
30 16 0.36
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (28 bp):
TCATTTTTTTTAATATTATTTATTAATA
Found at i:8183 original size:24 final size:26
Alignment explanation
Indices: 8151--8198 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
8141 TTTCATTTAT
*
8151 TATAAAGTT-TTA-TTTATTTTTAAA
1 TATAAAGTTCTAATTTTATTTTTAAA
*
8175 TATATAGTTCTAATTTTATTTTTA
1 TATAAAGTTCTAATTTTATTTTTA
8199 TTATTATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 2 0.10
26 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (26 bp):
TATAAAGTTCTAATTTTATTTTTAAA
Found at i:10120 original size:6 final size:6
Alignment explanation
Indices: 10102--10132 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
10092 AGTTTAACTC
*
10102 TTTAAG TTAAAG TTTAAG TTTAAG TTTAAG T
1 TTTAAG TTTAAG TTTAAG TTTAAG TTTAAG T
10133 GAATTTTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.48
Consensus pattern (6 bp):
TTTAAG
Found at i:11251 original size:21 final size:21
Alignment explanation
Indices: 11210--11252 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
11200 TTAAAGATAA
*
11210 ATTATAAGTTTAATTATTTTT
1 ATTATAAGTTTAATTAATTTT
*
11231 ATTATAA-TTTTATCTAATTTT
1 ATTATAAGTTTAAT-TAATTTT
11252 A
1 A
11253 ATCATCATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTATAAGTTTAATTAATTTT
Found at i:15328 original size:14 final size:14
Alignment explanation
Indices: 15311--15394 Score: 61
Period size: 14 Copynumber: 6.2 Consensus size: 14
15301 GATAAAAAAT
15311 AATAAGAAAAAAGA
1 AATAAGAAAAAAGA
*
15325 AATAAAATAAAAATG-
1 AATAAGA-AAAAA-GA
*
15340 AA-AAGAAAAATGA
1 AATAAGAAAAAAGA
*
15353 AAAAAGAAAAAAGA
1 AATAAGAAAAAAGA
* **
15367 AAAAAGAAGCAA-A
1 AATAAGAAAAAAGA
15380 AA-AAGAAAAAA-A
1 AATAAGAAAAAAGA
15392 AAT
1 AAT
15395 TAAAATAATG
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
12 11 0.19
13 9 0.16
14 29 0.51
15 7 0.12
16 1 0.02
ACGTcount: A:0.80, C:0.01, G:0.12, T:0.07
Consensus pattern (14 bp):
AATAAGAAAAAAGA
Found at i:15383 original size:21 final size:21
Alignment explanation
Indices: 15314--15390 Score: 65
Period size: 21 Copynumber: 3.8 Consensus size: 21
15304 AAAAAATAAT
15314 AAGAAAAAAGAAATAAA-ATAAA
1 AAGAAAAAAGAAA-AAAGA-AAA
*
15336 AATG--AAAAGAAAAATGAAAA
1 AA-GAAAAAAGAAAAAAGAAAA
*
15356 AAGAAAAAAGAAAAAAG-AAG
1 AAGAAAAAAGAAAAAAGAAAA
*
15376 CA-AAAAAAGAAAAAA
1 AAGAAAAAAGAAAAAA
15391 AAATTAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
19 14 0.30
20 10 0.21
21 20 0.43
22 2 0.04
23 1 0.02
ACGTcount: A:0.81, C:0.01, G:0.13, T:0.05
Consensus pattern (21 bp):
AAGAAAAAAGAAAAAAGAAAA
Found at i:15390 original size:7 final size:7
Alignment explanation
Indices: 15314--15374 Score: 65
Period size: 7 Copynumber: 8.7 Consensus size: 7
15304 AAAAAATAAT
15314 AAGAAAA
1 AAGAAAA
15321 AAGAAATA
1 AAGAAA-A
15329 AA-ATAAA
1 AAGA-AAA
15336 AATG--AA
1 AA-GAAAA
15342 AAGAAAA
1 AAGAAAA
*
15349 ATGAAAA
1 AAGAAAA
15356 AAGAAAA
1 AAGAAAA
15363 AAGAAAA
1 AAGAAAA
15370 AAGAA
1 AAGAA
15375 GCAAAAAAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
5 1 0.02
6 4 0.09
7 36 0.78
8 5 0.11
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (7 bp):
AAGAAAA
Found at i:17543 original size:101 final size:101
Alignment explanation
Indices: 17347--17555 Score: 275
Period size: 101 Copynumber: 2.1 Consensus size: 101
17337 ACATGAACAT
* *
17347 TTGAGATTGTTTTTCTCAAAATCAATTTCATCTCACTTGAGACATTTTCCTTTGAAGCAAAAGTT
1 TTGAGATTGTTTTTCTCAAAATCAATTTCATCTCACTTGAGACATTTTCCTTGGAAGCAAAAGAT
* *
17412 TTGGAATTGCTTCTCATGAAACAAGATTTATCTCAC
66 TTGAAATTGCTTCACATGAAACAAGATTTATCTCAC
* *
17448 TTGAGATTGTTTTTCTTAAAATCAATTTCATCTCGCTTGAGACAATTTTCCCTTGGAA-CACAAA
1 TTGAGATTGTTTTTCTCAAAATCAATTTCATCTCACTTGAGAC-ATTTT-CCTTGGAAGCA-AAA
*
17512 -ATTTGAAATTG-TTCAC-TCGAACCAA-ATTTTATCTCAC
63 GATTTGAAATTGCTTCACAT-GAAACAAGA-TTTATCTCAC
17549 TTGAGAT
1 TTGAGAT
17556 AGCTTCTTTT
Statistics
Matches: 96, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
100 2 0.02
101 68 0.71
102 16 0.17
103 10 0.10
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (101 bp):
TTGAGATTGTTTTTCTCAAAATCAATTTCATCTCACTTGAGACATTTTCCTTGGAAGCAAAAGAT
TTGAAATTGCTTCACATGAAACAAGATTTATCTCAC
Found at i:17983 original size:44 final size:45
Alignment explanation
Indices: 17906--18026 Score: 111
Period size: 44 Copynumber: 2.7 Consensus size: 45
17896 GTTCAATATT
* * * * * *
17906 TTGCTCCATTCTATCACAGAAGGAGGTAGATCAACA-TCAACATT-
1 TTGCTCGATTCCATCATAGAATGAGCTGGATCAACATTC-ACATTC
* * * *
17950 TTGTTCGATTCCATTATAGAATGAGCTGGATCAATATTCTCATTC
1 TTGCTCGATTCCATCATAGAATGAGCTGGATCAACATTCACATTC
* *
17995 TTGCTCGATTCTATCATAGAATGAGGTGGATC
1 TTGCTCGATTCCATCATAGAATGAGCTGGATC
18027 GTCATTTCCA
Statistics
Matches: 61, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
44 31 0.51
45 30 0.49
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (45 bp):
TTGCTCGATTCCATCATAGAATGAGCTGGATCAACATTCACATTC
Found at i:18299 original size:163 final size:161
Alignment explanation
Indices: 17999--18496 Score: 495
Period size: 163 Copynumber: 3.1 Consensus size: 161
17989 TCATTCTTGC
* * * *** *
17999 TCGATTCTATCATAGAATGAGGTGGATCGTCATTTCCAATGGAATGGTTCATAATGAGAAGAACT
1 TCGATTCCATCACAGAAGGAGGTGGATAAACATTTCCAATGG-AGGGTTCATAATGAGAAGAACT
* * * * * * * * * *
18064 CGTCCAAAGAGGGAGAATAATTTCATAATGAGAAGAACTTGTTCACCCATTTGCTCTATTCTCTC
65 CATCCAAAGAAGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCGACTCTATC
* * *
18129 ATAGAATGAGGTAGATCGACGTCAACATTCTGT
130 GTAGAATGAGATAGATCGACATCAACATT-TGT
*
18162 TCGATTCCATCACAGAAGGAGGTGGATAAACATTTCCAATAGAGGGGTTCATAATGAGAAGAACT
1 TCGATTCCATCACAGAAGGAGGTGGATAAACATTTCCAATGGA-GGGTTCATAATGAGAAGAACT
* *
18227 CATCCAAATAAGGAGAAGAAGTTCATAATGAGAAGAAATTGTTCAACCTTTTACTCGACTCTATC
65 CATCCAAAGAAGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCGACTCTATC
* * * *
18292 GTAGAATGAGATATATAG-CATCAATATTTTT
130 GTAGAATGAGATAGATCGACATCAACATTTGT
* * * * ** * * * *
18323 CTCAAATCCATCATAAAAGGAGGTGGATCGTA-ATTTGCAACGGAGAGTTCATAATGAGAATAAC
1 -TCGATTCCATCACAGAAGGAGGTGGAT-AAACATTTCCAATGGAGGGTTCATAATGAGAAGAAC
* * * *
18387 TCATCCAAAGAATGAGAGGAAG-T--TAATAAGAAGAACTTGTTCAACATTTTACTCGACTCTAT
64 TCATCCAAAGAAGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCGACTCTAT
* * *
18449 CGCAAAAGGAGATAGATC-ATCATCAACACTTTGT
129 CGTAGAATGAGATAGATCGA-CATCAACA-TTTGT
18483 TCGATTCCATCACA
1 TCGATTCCATCACA
18497 TGAGGTGGAT
Statistics
Matches: 275, Mismatches: 54, Indels: 16
0.80 0.16 0.05
Matches are distributed among these distances:
158 49 0.18
159 18 0.07
160 5 0.02
161 39 0.14
162 41 0.15
163 123 0.45
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (161 bp):
TCGATTCCATCACAGAAGGAGGTGGATAAACATTTCCAATGGAGGGTTCATAATGAGAAGAACTC
ATCCAAAGAAGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCGACTCTATCG
TAGAATGAGATAGATCGACATCAACATTTGT
Found at i:23404 original size:20 final size:19
Alignment explanation
Indices: 23366--23410 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
23356 GTTAAGAAAA
23366 ATATATAAAACAAACGTAT
1 ATATATAAAACAAACGTAT
* *
23385 ATATATATAACCAAATGTAT
1 ATATATA-AAACAAACGTAT
23405 ATATAT
1 ATATAT
23411 GTATGTATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.33
Consensus pattern (19 bp):
ATATATAAAACAAACGTAT
Found at i:23662 original size:29 final size:30
Alignment explanation
Indices: 23638--23702 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
23628 GTGACCACTG
23638 AACT-TTCAATTGAATCAATCAGACCACCA
1 AACTATTCAATTGAATCAATCAGACCACCA
* * *
23667 AACTATTTAATTGATTCAATCAAACCACC-
1 AACTATTCAATTGAATCAATCAGACCACCA
23696 AACTATT
1 AACTATT
23703 AGTTTTTAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 11 0.34
30 21 0.66
ACGTcount: A:0.42, C:0.25, G:0.05, T:0.29
Consensus pattern (30 bp):
AACTATTCAATTGAATCAATCAGACCACCA
Found at i:24289 original size:29 final size:29
Alignment explanation
Indices: 24247--24310 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
24237 GTCGAACCAA
*
24247 AATTTATTTGAAAATTATTAACCAAACCG
1 AATTAATTTGAAAATTATTAACCAAACCG
*
24276 AATTAATTTGAAAATTATTAACCGAACCG
1 AATTAATTTGAAAATTATTAACCAAACCG
24305 AATTAA
1 AATTAA
24311 CCAAATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (29 bp):
AATTAATTTGAAAATTATTAACCAAACCG
Found at i:24426 original size:29 final size:30
Alignment explanation
Indices: 24383--24439 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
24373 CGGTTAATCG
* *
24383 AACCAAAATTTATTTGAAAGTTATTAACAT
1 AACCAAAATTAATTTGAAAATTATTAACAT
24413 AACC-AAATTAATTTGAAAATTATTAAC
1 AACCAAAATTAATTTGAAAATTATTAAC
24440 CAAACTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (30 bp):
AACCAAAATTAATTTGAAAATTATTAACAT
Found at i:24484 original size:14 final size:14
Alignment explanation
Indices: 24465--24491 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24455 GAAGAAAAAA
24465 TTCGGTTAATTTGG
1 TTCGGTTAATTTGG
24479 TTCGGTTAATTTG
1 TTCGGTTAATTTG
24492 AAAATTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.26, T:0.52
Consensus pattern (14 bp):
TTCGGTTAATTTGG
Found at i:24734 original size:16 final size:17
Alignment explanation
Indices: 24715--24752 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
24705 TTACAATTAA
*
24715 TTTAAATAA-TAATTTG
1 TTTAAACAACTAATTTG
24731 TTTAAACAACTAATTTG
1 TTTAAACAACTAATTTG
24748 TTTAA
1 TTTAA
24753 TTTTTTATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (17 bp):
TTTAAACAACTAATTTG
Found at i:25006 original size:244 final size:246
Alignment explanation
Indices: 24567--25034 Score: 764
Period size: 244 Copynumber: 1.9 Consensus size: 246
24557 TTTGGTTCGG
* *
24567 TTAATCGAACCAAAATTATTTGAAAATTATTAACTGAACCGAACAAATTTCAGTTAATTCTGTCA
1 TTAATCGAACCAAAATTATTTGAAAATTATTAACTCAACCAAACAAATTTCAGTTAATTCTGTCA
***
24632 ATTTTCGAATTAACGATTTTTTTTAAAATTTTCTACTATATAAAAATTGAATATTTTTAATTCAA
66 ATTTTCGAATTAACGATAAATTTTAAAATTTTCTACTATATAAAAATTGAATATTTTTAATTC-A
* * *
24697 AAAAACGTTTACAATTAATTTAAATAATAATTTGTTTAAACAACTAATTTGTTTAATTTTTTATC
130 AAAAACATTTACAATTAATTTAAATAATAATTTGTTTAAACAAATAATTTGTTTAATTATTTATC
24762 CTTAACAAACCTTTAAAAGACAAATACAATTAACCGATTTTTTCTTTAACCA
195 CTTAACAAACCTTTAAAAGACAAATACAATTAACCGATTTTTTCTTTAACCA
** * *
24814 TTAATCGAACCGAATTTTATTTGAAAATTATTAA-TCAACCAAACAAATTTCGGTTAGTTCTGTC
1 TTAATCGAACC-AAAATTATTTGAAAATTATTAACTCAACCAAACAAATTTCAGTTAATTCTGTC
24878 AATTTTCGAATTAAC-A-AAATTTTAAAATTTTCTACTATATAAAAATTGAATATTTTTAATTC-
65 AATTTTCGAATTAACGATAAATTTTAAAATTTTCTACTATATAAAAATTGAATATTTTTAATTCA
24940 AAAAACTATTTACAATTAATTTAAATAATAATTTGTTTAAACAAATAATTTGTTTAATTATTTAT
130 AAAAAC-ATTTACAATTAATTTAAATAATAATTTGTTTAAACAAATAATTTGTTTAATTATTTAT
*
25005 CCTTAAGAAACCTTTAAAAGACAAATACAA
194 CCTTAACAAACCTTTAAAAGACAAATACAA
25035 ATTGTTGTAA
Statistics
Matches: 206, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
243 6 0.03
244 84 0.41
245 43 0.21
246 1 0.00
247 52 0.25
248 20 0.10
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (246 bp):
TTAATCGAACCAAAATTATTTGAAAATTATTAACTCAACCAAACAAATTTCAGTTAATTCTGTCA
ATTTTCGAATTAACGATAAATTTTAAAATTTTCTACTATATAAAAATTGAATATTTTTAATTCAA
AAAACATTTACAATTAATTTAAATAATAATTTGTTTAAACAAATAATTTGTTTAATTATTTATCC
TTAACAAACCTTTAAAAGACAAATACAATTAACCGATTTTTTCTTTAACCA
Found at i:26551 original size:37 final size:37
Alignment explanation
Indices: 26510--26614 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
26500 GTGCTTGTGG
* * *
26510 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* * * *
26547 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTTT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
*
26584 ATCATATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
26615 GACAAAAATG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:27483 original size:106 final size:103
Alignment explanation
Indices: 27344--28491 Score: 1159
Period size: 106 Copynumber: 11.0 Consensus size: 103
27334 AGCATTGTTC
*
27344 TGAGTCCAATATCCTCCG-TCGTGAAGTTAAAATTGGCTCTGGAACCTGAAAATTGTTTGTTGAC
1 TGAGTCCAATATCCTTCGCT-GTGAAGTTAAAATTGGCTCT-GAA--TGAAAATTGTTTGTTGAC
* * * * *
27408 AACCAACCATCCCTTCGTTGTGAAGTTGAACTTGTTTTGTAT
62 AACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * * * *
27450 CGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATG-AAA-T-TTTGTTGACAATC
1 TGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAATGAAAATTGTTTGTTGACAACC
* * * *
27512 AGCCGCCCCTTCGTCATGAAGATT-AGCTTGTGTTGCCT
66 AGCCGTCCCTTCGTCGTGAAG-TTGAACTTGTGTTGTCT
* * * * * * *
27550 TGGGTTCAAGATCCTTCGCTGAGAAGTTAAAATTGGCTCTGAAATTGGAAAGTTGTTTATTGAAA
1 TGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTG-AA-T-GAAAATTGTTTGTTGACA
* *
27615 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
63 ACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * *
27656 TGAGTCCAATATCCTACGCTGTGAAGTTGAAATTGG---T---T----A---TTTATTGACAACC
1 TGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAATGAAAATTGTTTGTTGACAACC
* *
27708 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 AGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* ** * * *
27746 GGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACA
1 TGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCT-GAA-TGA-AAATTGTTTGTTGACA
** *
27811 ACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-
63 ACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * * *
27851 TGAAGTCCAAAATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
1 TG-AGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTG-AA-TGA-AAATTGTTTGTTGAC
* * * *
27916 AACCAGCGGTCCCTTTGTTGTGAAGTTGAACTTGCGTTGT-T
62 AACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * *
27957 TGGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGAC
1 T-GAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTG-AA-T-GAAAATTGTTTGTTGAC
** *
28022 AACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
62 AACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * * *
28064 GGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACA
1 TGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTG-AA-TGAAAA-TTGTTTGTTGACA
*
28129 ACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
63 ACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * * * *
28170 GGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTATTGACA
1 TGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTG-AA-T-GAAAATTGTTTGTTGACA
*
28235 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
63 ACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * * * *
28276 GGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGATCTGAAATTGGGAAATTGTTTATTGACA
1 TGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTG-AA-T-GAAAATTGTTTGTTGACA
* * **
28341 ACCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCT
63 ACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * *
28382 GGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTG-TTGTTGACA
1 TGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTG-AA-T-GAAAATTGTTTGTTGACA
* * * *
28446 ACCAGCCATCCCTTCGTTGTGAAGTTGTACTTATGTTGTCT
63 ACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
28487 TGAGT
1 TGAGT
28492 GGCACGATAT
Statistics
Matches: 910, Mismatches: 99, Indels: 67
0.85 0.09 0.06
Matches are distributed among these distances:
90 82 0.09
93 1 0.00
98 2 0.00
100 71 0.08
101 5 0.01
102 4 0.00
103 4 0.00
104 2 0.00
105 55 0.06
106 676 0.74
107 8 0.01
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (103 bp):
TGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAATGAAAATTGTTTGTTGACAACC
AGCCGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
Found at i:27758 original size:90 final size:90
Alignment explanation
Indices: 27605--27781 Score: 309
Period size: 90 Copynumber: 2.0 Consensus size: 90
27595 TGGAAAGTTG
*
27605 TTTATTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCC
1 TTTATTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
*
27670 TACGCTGTGAAGTTGAAATTGGTTA
66 TACACTGTGAAGTTGAAATTGGTTA
*
27695 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
1 TTTATTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
* *
27760 TTCATTGTGAAGTTGAAATTGG
66 TACACTGTGAAGTTGAAATTGG
27782 CTCTAAAATT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 82 1.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (90 bp):
TTTATTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
TACACTGTGAAGTTGAAATTGGTTA
Found at i:28281 original size:318 final size:318
Alignment explanation
Indices: 27695--28491 Score: 1312
Period size: 318 Copynumber: 2.5 Consensus size: 318
27685 AAATTGGTTA
27695 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
1 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
* * * **
27760 TTCATTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGTGGTCCCTT
66 TTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACAACCAGCCGTCCCTT
*
27825 CGTCGTGAAGTTGAACTTGCGTTGTCTGAAGTCCAAAATCCTTCACTGTGAAGTTGAAATTGGCT
131 CGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAATCCTTCACTGTGAAGTTGAAATTGGCT
* * *
27890 CTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTTGTTGTGAAGTTGAACTTGCGTTG
196 CTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTG
* * *
27955 TTTGGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAGTTG
261 TCTGGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGATCTGAAATTGGGAAATTG
* *
28013 TTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCT
1 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
28078 TTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACAACCAGCCGTCCCTT
66 TTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACAACCAGCCGTCCCTT
*
28143 CGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCT
131 CGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAATCCTTCACTGTGAAGTTGAAATTGGCT
*
28208 CTGAAATTG-GAAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTT
196 CTGAAATTGAG-AAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTT
*
28272 GTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGATCTGAAATTGGGAAATTG
260 GTCTGGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGATCTGAAATTGGGAAATTG
* *
28331 TTTATTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCC
1 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
* * *
28396 TTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAA-TTG-TTGTTGACAACCAGCCATCCCT
66 TTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GAAAAGTTGTTTGTTGACAACCAGCCGTCCCT
* * ** *
28459 TCGTTGTGAAGTTGTACTTATGTTGTCTTGAGT
130 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
28492 GGCACGATAT
Statistics
Matches: 448, Mismatches: 29, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
317 50 0.11
318 393 0.88
319 5 0.01
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (318 bp):
TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
TTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACAACCAGCCGTCCCTT
CGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAATCCTTCACTGTGAAGTTGAAATTGGCT
CTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTG
TCTGGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGATCTGAAATTGGGAAATTG
Found at i:29343 original size:22 final size:22
Alignment explanation
Indices: 29317--29393 Score: 136
Period size: 22 Copynumber: 3.5 Consensus size: 22
29307 TTATGTTTGG
29317 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
29339 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
29361 TCATAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
29383 TCAACGGTTTG
1 TCAAAGGTTTG
29394 ATGGGGTAGC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.21, C:0.14, G:0.27, T:0.38
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:30031 original size:17 final size:16
Alignment explanation
Indices: 30005--30072 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 16
29995 ATTTTTGTTC
30005 TTTCTTTTTTTCTTTTG
1 TTTC-TTTTTTCTTTTG
30022 TTTCTCTTTTT-TCTTT-
1 TTTCT-TTTTTCT-TTTG
*
30038 TTT-TTTCTTCTTTTG
1 TTTCTTTTTTCTTTTG
*
30053 TTTC--TTTTCTTTTT
1 TTTCTTTTTTCTTTTG
30067 TTTCTT
1 TTTCTT
30073 GATTGGATCT
Statistics
Matches: 41, Mismatches: 3, Indels: 15
0.69 0.05 0.25
Matches are distributed among these distances:
14 19 0.46
15 5 0.12
16 5 0.12
17 12 0.29
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTCTTTTTTCTTTTG
Found at i:30034 original size:9 final size:8
Alignment explanation
Indices: 30005--30068 Score: 65
Period size: 8 Copynumber: 7.4 Consensus size: 8
29995 ATTTTTGTTC
30005 TTTCTTTT
1 TTTCTTTT
30013 TTTCTTTT
1 TTTCTTTT
30021 GTTTCTCTTT
1 -TTTCT-TTT
30031 TTTCTTTTTT
1 TTTC--TTTT
*
30041 TTTCTTCT
1 TTTCTTTT
*
30049 TTTGTTTCT
1 TTTCTTT-T
30058 TTTCTTTT
1 TTTCTTTT
30066 TTT
1 TTT
30069 TCTTGATTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
8 20 0.43
9 16 0.34
10 10 0.21
11 1 0.02
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (8 bp):
TTTCTTTT
Found at i:30052 original size:31 final size:29
Alignment explanation
Indices: 29996--30069 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 29
29986 TTCTTTTTGA
*
29996 TTTTTGTTCTTTCTTTTTTTCTTTTGTTTC
1 TTTTT-TTCTTTTTTTTTTTCTTTTGTTTC
30026 TCTTTTTTCTTTTTTTTTCTTCTTTTGTTTC
1 T-TTTTTTCTTTTTTTTT-TTCTTTTGTTTC
*
30057 TTTTCTT-TTTTTT
1 TTTTTTTCTTTTTT
30070 CTTGATTGGA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
29 6 0.15
30 17 0.43
31 17 0.43
ACGTcount: A:0.00, C:0.14, G:0.04, T:0.82
Consensus pattern (29 bp):
TTTTTTTCTTTTTTTTTTTCTTTTGTTTC
Found at i:30065 original size:26 final size:29
Alignment explanation
Indices: 30002--30072 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 29
29992 TTGATTTTTG
30002 TTCTTTCTTTTT-TTCTTTTGTTTCTCTTTT
1 TTCTTT-TTTTTCTTCTTTTGTTTCTC-TTT
30032 TTCTTTTTTTTTCTTCTTTTG-TT-TC-TT
1 TTC-TTTTTTTTCTTCTTTTGTTTCTCTTT
30059 TTCTTTTTTTTCTT
1 TTCTTTTTTTTCTT
30073 GATTGGATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
26 11 0.28
27 5 0.13
29 2 0.05
30 10 0.26
31 11 0.28
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (29 bp):
TTCTTTTTTTTCTTCTTTTGTTTCTCTTT
Found at i:30069 original size:9 final size:9
Alignment explanation
Indices: 29983--30072 Score: 69
Period size: 9 Copynumber: 9.9 Consensus size: 9
29973 TTTTTGTCCC
29983 TTTTTCTTT
1 TTTTTCTTT
29992 TTGATTT-TTGT
1 TT--TTTCTT-T
*
30003 TCTTTC-TT
1 TTTTTCTTT
30011 TTTTTCTTT
1 TTTTTCTTT
* *
30020 TGTTTCTCT
1 TTTTTCTTT
30029 TTTTTCTTT
1 TTTTTCTTT
30038 TTTTT-TCTT
1 TTTTTCT-TT
* *
30047 CTTTTGTTT
1 TTTTTCTTT
*
30056 CTTTTCTTT
1 TTTTTCTTT
30065 TTTTTCTT
1 TTTTTCTT
30073 GATTGGATCT
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
8 7 0.11
9 50 0.77
10 3 0.05
11 5 0.08
ACGTcount: A:0.01, C:0.13, G:0.04, T:0.81
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:30401 original size:14 final size:14
Alignment explanation
Indices: 30382--30414 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
30372 ATGCATGATA
*
30382 GAATTATTTCGGAT
1 GAATTATTTCAGAT
30396 GAATTATTTCAGAT
1 GAATTATTTCAGAT
30410 GAATT
1 GAATT
30415 CTTCTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.18, T:0.42
Consensus pattern (14 bp):
GAATTATTTCAGAT
Found at i:34519 original size:10 final size:10
Alignment explanation
Indices: 34502--34558 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
34492 AAAAATGAAG
34502 AATAAAAATA
1 AATAAAAATA
*
34512 AGTAAAAATA
1 AATAAAAATA
*
34522 AATATAAATA
1 AATAAAAATA
34532 AAT--AAATA
1 AATAAAAATA
34540 AATAAATAAATA
1 AAT-AA-AAATA
34552 AATAAAA
1 AATAAAA
34559 TATTAAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 8 0.20
10 22 0.55
11 2 0.05
12 8 0.20
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (10 bp):
AATAAAAATA
Found at i:34521 original size:16 final size:16
Alignment explanation
Indices: 34488--34549 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
34478 GAATAAATGA
* *
34488 AAAAAAAAATGAAGAAT
1 AAAAATAAAT-AAAAAT
*
34505 AAAAATAAGTAAAAAT
1 AAAAATAAATAAAAAT
*
34521 AAATATAAATAAATAA-
1 AAAAATAAATAAA-AAT
*
34537 ATAAATAAATAAA
1 AAAAATAAATAAA
34550 TAAATAAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
16 27 0.73
17 10 0.27
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (16 bp):
AAAAATAAATAAAAAT
Found at i:34532 original size:4 final size:4
Alignment explanation
Indices: 34517--34557 Score: 68
Period size: 4 Copynumber: 10.8 Consensus size: 4
34507 AAATAAGTAA
34517 AAAT AAAT --AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
34558 ATATTAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
4 33 0.94
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:34909 original size:33 final size:35
Alignment explanation
Indices: 34847--34928 Score: 109
Period size: 33 Copynumber: 2.4 Consensus size: 35
34837 ATAATACGCT
*
34847 TATAAATAA-AATATTTTAAAAAAAGTATATATATA
1 TATAAATAATAATA-TCTAAAAAAAGTATATATATA
*
34882 TATAAATAATAATATCT-AAAAAA-TATATGTATA
1 TATAAATAATAATATCTAAAAAAAGTATATATATA
34915 TAT-AATAATAATAT
1 TATAAATAATAATAT
34929 ATAGTGTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
32 11 0.25
33 12 0.27
34 6 0.14
35 11 0.25
36 4 0.09
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (35 bp):
TATAAATAATAATATCTAAAAAAAGTATATATATA
Found at i:35453 original size:37 final size:37
Alignment explanation
Indices: 35403--35507 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
35393 ATGCTTGTGG
* * *
35403 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* * * *
35440 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAAGTTT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* *
35477 ATCATATTCTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
35508 GACGAAAATG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.39
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:39776 original size:24 final size:23
Alignment explanation
Indices: 39742--39798 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
39732 GAACCAATCT
39742 TTTTCTT-ATTTTCTATTTCCTT-A
1 TTTTCTTCATTTTCT-TTT-CTTGA
39765 TTTTCTTCATTTTTCTTTTCTTGA
1 TTTTCTTCA-TTTTCTTTTCTTGA
*
39789 TCTTCTTCAT
1 TTTTCTTCAT
39799 CCATCACCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 11 0.37
24 13 0.43
25 6 0.20
ACGTcount: A:0.11, C:0.19, G:0.02, T:0.68
Consensus pattern (23 bp):
TTTTCTTCATTTTCTTTTCTTGA
Found at i:44794 original size:20 final size:21
Alignment explanation
Indices: 44762--44810 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
44752 TTTCTCAAAA
44762 TATAATATTTAGAATATATTT
1 TATAATATTTAGAATATATTT
*
44783 TATAAT-TTTAGATTATATTT
1 TATAATATTTAGAATATATTT
*
44803 GAT-ATATT
1 TATAATATT
44811 AAATAACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 17 0.68
21 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (21 bp):
TATAATATTTAGAATATATTT
Found at i:46712 original size:27 final size:27
Alignment explanation
Indices: 46682--46744 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
46672 CCAAAATAAA
46682 TATAATCAAACCGAAA-CAGACCCGAAT
1 TATAATCAAACCGAAATCA-ACCCGAAT
* **
46709 TATAGTTTAACCGAAATCAACCCGAAT
1 TATAATCAAACCGAAATCAACCCGAAT
* *
46736 CAAAATCAA
1 TATAATCAA
46745 CTCGAATCGA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.48, C:0.24, G:0.10, T:0.19
Consensus pattern (27 bp):
TATAATCAAACCGAAATCAACCCGAAT
Found at i:46741 original size:16 final size:16
Alignment explanation
Indices: 46722--46799 Score: 70
Period size: 16 Copynumber: 4.9 Consensus size: 16
46712 AGTTTAACCG
46722 AAATCAACCCGAATCA
1 AAATCAACCCGAATCA
* *
46738 AAATCAACTCGAATCG
1 AAATCAACCCGAATCA
*
46754 AGATCAACCCGAA-CAGA
1 AAATCAACCCGAATC--A
*
46771 AAAT-AACCCGAACCA
1 AAATCAACCCGAATCA
* *
46786 AAAGCAACCTGAAT
1 AAATCAACCCGAAT
46800 TTAATTTATC
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
15 5 0.10
16 40 0.82
17 4 0.08
ACGTcount: A:0.49, C:0.28, G:0.12, T:0.12
Consensus pattern (16 bp):
AAATCAACCCGAATCA
Found at i:47505 original size:80 final size:79
Alignment explanation
Indices: 47384--47532 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 79
47374 AAGAGTGACG
* * * * *
47384 AAGGTTGACCCAAACCGAAACAATCCGAATTAACTCGAAAATCTAAAGGTTGATCCGAACCTAAA
1 AAGGTTGACCCAAACCGAAACAACCCGAATTAACCCGAAAATCTAAAGCTTGACCCGAACCGAAA
47449 CCAACTTGATTTTA
66 CCAACTTGATTTTA
* * * * *
47463 AAGGTTGATCCGAATCGAAACTAACCCGAATTGACCCGAAAATCTAAAGCTTGACCCGACCCGAA
1 AAGGTTGACCCAAACCGAAAC-AACCCGAATTAACCCGAAAATCTAAAGCTTGACCCGAACCGAA
47528 ACCAA
65 ACCAA
47533 TCGATCCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
79 18 0.31
80 41 0.69
ACGTcount: A:0.40, C:0.26, G:0.15, T:0.19
Consensus pattern (79 bp):
AAGGTTGACCCAAACCGAAACAACCCGAATTAACCCGAAAATCTAAAGCTTGACCCGAACCGAAA
CCAACTTGATTTTA
Found at i:47579 original size:30 final size:31
Alignment explanation
Indices: 47513--47580 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
47503 AATCTAAAGC
*
47513 TTGACCCGACCCGAAACCAATCGATCCAATT
1 TTGACCCGACCCGAAACCAATCGACCCAATT
* *
47544 TTGACCCGACTCGAAAACCAA-CGACCCGA-T
1 TTGACCCGACCCG-AAACCAATCGACCCAATT
47574 TTGACCC
1 TTGACCC
47581 TGTACCTGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 8 0.24
31 18 0.55
32 7 0.21
ACGTcount: A:0.31, C:0.37, G:0.15, T:0.18
Consensus pattern (31 bp):
TTGACCCGACCCGAAACCAATCGACCCAATT
Found at i:48429 original size:45 final size:45
Alignment explanation
Indices: 48365--48456 Score: 168
Period size: 45 Copynumber: 2.0 Consensus size: 45
48355 CAAAAAGGGG
48365 TACTTATTTCTATGTTTCCATTCTT-AATTGTTTTTGTAATTTGCT
1 TACTTATTTCTATGTTTCCATT-TTCAATTGTTTTTGTAATTTGCT
48410 TACTTATTTCTATGTTTCCATTTTCAATTGTTTTTGTAATTTGCT
1 TACTTATTTCTATGTTTCCATTTTCAATTGTTTTTGTAATTTGCT
48455 TA
1 TA
48457 TACATGCATA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
44 2 0.04
45 44 0.96
ACGTcount: A:0.18, C:0.13, G:0.09, T:0.60
Consensus pattern (45 bp):
TACTTATTTCTATGTTTCCATTTTCAATTGTTTTTGTAATTTGCT
Found at i:50906 original size:46 final size:45
Alignment explanation
Indices: 50804--50975 Score: 254
Period size: 45 Copynumber: 3.8 Consensus size: 45
50794 AATAAATGCT
*
50804 TGCGAACTAGATATCATGTGGTTAGGTTTATTTTTCGAACAAGCA
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTCGAACAAGCA
* * * *
50849 TGCGAACTAGATATCATGTGGTTAGGTTTATTTTTTTGAATAAGTA
1 TGCGAACTAGATATCATGCGGTTAGGTTTA-TTTTTCGAACAAGCA
* *
50895 TGCGAATTAGATATCATGCGGTTAGGTTTATTTATCGAACAAGCA
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTCGAACAAGCA
*
50940 TGCGAATTAGATATCATGCGGTTAGGATTTATTTTT
1 TGCGAACTAGATATCATGCGGTTAGG-TTTATTTTT
50976 GTGGATAACA
Statistics
Matches: 115, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
45 67 0.58
46 48 0.42
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.39
Consensus pattern (45 bp):
TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTCGAACAAGCA
Found at i:50906 original size:91 final size:92
Alignment explanation
Indices: 50804--50975 Score: 292
Period size: 91 Copynumber: 1.9 Consensus size: 92
50794 AATAAATGCT
* * *
50804 TGCGAACTAGATATCATGTGGTTAGGTTTATTTTTCGAACAAGCATGCGAACTAGATATCATGTG
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTATCGAACAAGCATGCGAACTAGATATCATGCG
50869 GTTAGG-TTTATTTTTTTGAATAAGTA
66 GTTAGGATTTATTTTTTTGAATAAGTA
* *
50895 TGCGAATTAGATATCATGCGGTTAGGTTTATTTATCGAACAAGCATGCGAATTAGATATCATGCG
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTATCGAACAAGCATGCGAACTAGATATCATGCG
50960 GTTAGGATTTATTTTT
66 GTTAGGATTTATTTTT
50976 GTGGATAACA
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 66 0.88
92 9 0.12
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.39
Consensus pattern (92 bp):
TGCGAACTAGATATCATGCGGTTAGGTTTATTTATCGAACAAGCATGCGAACTAGATATCATGCG
GTTAGGATTTATTTTTTTGAATAAGTA
Found at i:60606 original size:16 final size:16
Alignment explanation
Indices: 60585--60622 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
60575 TTGAAGAAGA
60585 AATAAAAGGAAAAAAG
1 AATAAAAGGAAAAAAG
*
60601 AAT-AAATGAAAAAAG
1 AATAAAAGGAAAAAAG
60616 AATAAAA
1 AATAAAA
60623 AAATAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (16 bp):
AATAAAAGGAAAAAAG
Found at i:60660 original size:10 final size:10
Alignment explanation
Indices: 60645--60717 Score: 53
Period size: 10 Copynumber: 7.2 Consensus size: 10
60635 TAAAAATGAG
60645 AAGAAGAAAA
1 AAGAAGAAAA
60655 AAGAAGAAAA
1 AAGAAGAAAA
* *
60665 AA-ATGAGAA
1 AAGAAGAAAA
60674 AA-AAGAAAA
1 AAGAAGAAAA
*
60683 AATGATGGAAAA
1 AA-GA-AGAAAA
60695 AACGAA-AAGAA
1 AA-GAAGAA-AA
*
60706 AAAAAGAAAA
1 AAGAAGAAAA
60716 AA
1 AA
60718 TGGAAAATGG
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
9 14 0.28
10 20 0.40
11 7 0.14
12 9 0.18
ACGTcount: A:0.77, C:0.01, G:0.18, T:0.04
Consensus pattern (10 bp):
AAGAAGAAAA
Found at i:60666 original size:27 final size:27
Alignment explanation
Indices: 60636--60717 Score: 80
Period size: 28 Copynumber: 3.1 Consensus size: 27
60626 TAATAATAAT
60636 AAAAATGAGAAGAAGAAAAAAGAAGAA
1 AAAAATGAGAAGAAGAAAAAAGAAGAA
* * *
60663 AAAAATGAGAAAAAAGAAAAAATGATGGA
1 AAAAATGAG-AAGAAGAAAAAA-GAAGAA
* *
60692 AAAAACGAAAAG-A-AAAAAAGAA-AA
1 AAAAATGAGAAGAAGAAAAAAGAAGAA
60716 AA
1 AA
60718 TGGAAAATGG
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
24 3 0.07
25 2 0.04
26 6 0.13
27 10 0.22
28 13 0.29
29 11 0.24
ACGTcount: A:0.76, C:0.01, G:0.18, T:0.05
Consensus pattern (27 bp):
AAAAATGAGAAGAAGAAAAAAGAAGAA
Found at i:60673 original size:21 final size:20
Alignment explanation
Indices: 60649--60717 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
60639 AATGAGAAGA
60649 AGAAAAAAGAAGAAAAAAATG
1 AGAAAAAAGAA-AAAAAAATG
**
60670 AGAAAAAAGAAAAAATGATG
1 AGAAAAAAGAAAAAAAAATG
*
60690 -GAAAAAACGAAAAGAAAAA-A
1 AGAAAAAA-GAAAA-AAAAATG
60710 AGAAAAAA
1 AGAAAAAA
60718 TGGAAAATGG
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 7 0.17
20 12 0.30
21 21 0.52
ACGTcount: A:0.77, C:0.01, G:0.17, T:0.04
Consensus pattern (20 bp):
AGAAAAAAGAAAAAAAAATG
Found at i:60694 original size:28 final size:27
Alignment explanation
Indices: 60636--60717 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
60626 TAATAATAAT
*
60636 AAAAATGAGAAGAAGAAAAAAGAAGAA
1 AAAAATGAGAAAAAGAAAAAAGAAGAA
* *
60663 AAAAATGAGAAAAAAGAAAAAATGATGGA
1 AAAAATGAG-AAAAAGAAAAAA-GAAGAA
* *
60692 AAAAACGA-AAAGA-AAAAAAGAA-AA
1 AAAAATGAGAAAAAGAAAAAAGAAGAA
60716 AA
1 AA
60718 TGGAAAATGG
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
24 3 0.07
25 2 0.04
26 6 0.13
27 13 0.28
28 11 0.24
29 11 0.24
ACGTcount: A:0.76, C:0.01, G:0.18, T:0.05
Consensus pattern (27 bp):
AAAAATGAGAAAAAGAAAAAAGAAGAA
Found at i:62082 original size:37 final size:37
Alignment explanation
Indices: 62022--62102 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
62012 TTGACCATTC
* *
62022 GAAGTAAGTCAATCTTAAGCCTTCACGGAAGAGTAGT
1 GAAGCAAGTCAATCTTAAACCTTCACGGAAGAGTAGT
62059 GAAGCAAGTCAATCTTAAACCTTCACGGAAGAGTAGT
1 GAAGCAAGTCAATCTTAAACCTTCACGGAAGAGTAGT
62096 GAAGCAA
1 GAAGCAA
62103 ACTTATTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (37 bp):
GAAGCAAGTCAATCTTAAACCTTCACGGAAGAGTAGT
Found at i:62192 original size:55 final size:55
Alignment explanation
Indices: 62113--62725 Score: 707
Period size: 55 Copynumber: 11.3 Consensus size: 55
62103 ACTTATTTTA
* *
62113 TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTT-T
1 TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
* *
62167 ATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTGT
1 -TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
* * * * **
62223 TGAAGATTGTTCGAGTTGTATACTCTCTGAAAGAATAGAGAGCGGACCCGTTTCA
1 TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
*
62278 TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTGT
1 TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
*
62333 TGAAGA----TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTT-T
1 TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
* * *
62383 ATGAAGATTGTTCGAGTTCTATACTCCCTGAACGAATAGGGAGCGGACATGTTTGT
1 -TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
* * * ** *
62439 TGAGGATTGTTCGAGTCCTATACTCTCTAAAGGAATAGGGAGTAGACACGTTTAT
1 TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
* * *
62494 TGAAGA----CCGAG-TCTTATACTCTCTAAAGGAATAGGGAGCGGACCCGTTTGT
1 TGAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
* * * * *
62545 TGAAGATTATTCAAG-TCTTATACTCCCTGAACGAATAGGGAGCAGACACGTTTGT
1 TGAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
* * * *
62600 TGAAGATTGTTTGAG-TCTTATACTCCCTGAACGAATAGGGAGCAGACACGTTTGT
1 TGAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
* * * *
62655 TGAAGATTGTTTGAG-TCTTATACTCCCTGAATGAATAGGGAGCAGACACGTTTG-
1 TGAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
**
62709 CCAAGGATTGTTCGAGT
1 TGAA-GATTGTTCGAGT
62726 CTTATACGCC
Statistics
Matches: 501, Mismatches: 43, Indels: 27
0.88 0.08 0.05
Matches are distributed among these distances:
50 2 0.00
51 92 0.18
54 2 0.00
55 403 0.80
56 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (55 bp):
TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGT
Found at i:62408 original size:161 final size:161
Alignment explanation
Indices: 62112--62661 Score: 723
Period size: 161 Copynumber: 3.4 Consensus size: 161
62102 AACTTATTTT
* *
62112 ATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTT-TATGAAGATT
1 ATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCAGACACGTTTGT-TGAAGA--
*
62176 GTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTG
63 --TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTC
* * * * *
62241 TATACTCTCTGAAAGAATAGAGAGCGGACCCGTTTC
126 TATACTCCCTGAACGAATAGGGAGCGGACACGTTTG
*
62277 ATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTGTTGAAGATCG
1 ATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCAGACACGTTTGTTGAAGATCG
*
62342 AGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTT-TATGAAGATTGTTCGAGTTCTATA
66 AGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTGT-TGAAGATTGTTCGAGTTCTATA
*
62406 CTCCCTGAACGAATAGGGAGCGGACATGTTTG
130 CTCCCTGAACGAATAGGGAGCGGACACGTTTG
* * * * * * * *
62438 TTGAGGATTGTTCGAGTCCTATACTCTCTAAAGGAATAGGGAGTAGACACGTTTATTGAAGACCG
1 ATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCAGACACGTTTGTTGAAGATCG
* * * *
62503 AG-TCTTATACTCTCTAAAGGAATAGGGAGCGGACCCGTTTGTTGAAGATTATTCAAG-TCTTAT
66 AGTTC-TATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTC-TAT
*
62566 ACTCCCTGAACGAATAGGGAGCAGACACGTTTG
129 ACTCCCTGAACGAATAGGGAGCGGACACGTTTG
* * * * *
62599 TTGAAGATTGTTTGAG-TCTTATACTCCCTGAACGAATAGGGAGCAGACACGTTTGTTGAAGAT
1 ATGAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGAGAGCAGACACGTTTGTTGAAGAT
62662 TGTTTGAGTC
Statistics
Matches: 345, Mismatches: 34, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
160 6 0.02
161 278 0.81
162 1 0.00
165 59 0.17
166 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (161 bp):
ATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCAGACACGTTTGTTGAAGATCG
AGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATAC
TCCCTGAACGAATAGGGAGCGGACACGTTTG
Found at i:62569 original size:216 final size:216
Alignment explanation
Indices: 62113--62707 Score: 760
Period size: 216 Copynumber: 2.8 Consensus size: 216
62103 ACTTATTTTA
* *
62113 TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTATGAAGATTGT
1 TGAAGATTATTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTTATGAAGATTGT
* * * * **
62178 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTGTA
66 TCGAGTTCTATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGTTCGAGTCCTA
* * * * *
62243 TACTCTCTGAAAGAATAGAGAGCGGACCCGTTTCATGAAGATTGTTCGAGTTCTATACTCTCTGA
131 TACTCTCT-AAAGAATAGGGAGCAGACACGTTTCATGAAGA---TCCGAGTTCTATACTCTCTAA
62308 AGGAATAGAGAGCGGACACGTTTGT
192 AGGAATAGAGAGCGGACACGTTTGT
62333 TGAAG---A-TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTTATGAAGATTGT
1 TGAAGATTATTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTTATGAAGATTGT
* *
62394 TCGAGTTCTATACTCCCTGAACGAATAGGGAGCGGACATGTTTGTTGAGGATTGTTCGAGTCCTA
66 TCGAGTTCTATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGTTCGAGTCCTA
*
62459 TACTCTCTAAAGGAATAGGGAGTAGACACGTTT-ATTGAAGA-CCGAG-TCTTATACTCTCTAAA
131 TACTCTCTAAA-GAATAGGGAGCAGACACGTTTCA-TGAAGATCCGAGTTC-TATACTCTCTAAA
* *
62521 GGAATAGGGAGCGGACCCGTTTGT
193 GGAATAGAGAGCGGACACGTTTGT
* * * * *
62545 TGAAGATTATTCAAG-TCTTATACTCCCTGAACGAATAGGGAGCAGACACGTTTGT-TGAAGATT
1 TGAAGATTATTCGAGTTC-TATACTCTCTGAAGGAATAGAGAGCGGACACGTTT-TATGAAGATT
* * *
62608 GTTTGAG-TCTTATACTCCCTGAACGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTTGAGTC
64 GTTCGAGTTC-TATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGTTCGAGTC
* * *
62672 TTATACTCCCTGAATGAATAGGGAGCAGACACGTTT
128 CTATACTCTCT-AAAGAATAGGGAGCAGACACGTTT
62708 GCCAAGGATT
Statistics
Matches: 332, Mismatches: 32, Indels: 26
0.85 0.08 0.07
Matches are distributed among these distances:
211 2 0.01
212 43 0.13
215 9 0.03
216 270 0.81
217 3 0.01
220 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (216 bp):
TGAAGATTATTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTTATGAAGATTGT
TCGAGTTCTATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGTTCGAGTCCTA
TACTCTCTAAAGAATAGGGAGCAGACACGTTTCATGAAGATCCGAGTTCTATACTCTCTAAAGGA
ATAGAGAGCGGACACGTTTGT
Found at i:63311 original size:45 final size:45
Alignment explanation
Indices: 63247--63338 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
63237 CAAAAAGGGG
63247 TACTTATTTCTATGTTTCCATTCTCAATTGTTTTTGTAATTTGCT
1 TACTTATTTCTATGTTTCCATTCTCAATTGTTTTTGTAATTTGCT
*
63292 TACTTATTTCTATGTTTCCATTTTCAATTGTTTTTGTAATTTGCT
1 TACTTATTTCTATGTTTCCATTCTCAATTGTTTTTGTAATTTGCT
63337 TA
1 TA
63339 TACATGCATA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.18, C:0.14, G:0.09, T:0.59
Consensus pattern (45 bp):
TACTTATTTCTATGTTTCCATTCTCAATTGTTTTTGTAATTTGCT
Found at i:64012 original size:2 final size:2
Alignment explanation
Indices: 64001--64041 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
63991 TACTTTAATG
64001 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
64042 CATTTTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:66737 original size:2 final size:2
Alignment explanation
Indices: 66730--66782 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
66720 AATGTTGAAT
66730 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
66772 TA TA TA TA TA T
1 TA TA TA TA TA T
66783 TCACATCCCC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:67636 original size:15 final size:17
Alignment explanation
Indices: 67616--67647 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
67606 TAAAGAACGT
67616 ATATG-TGGAC-AGAAA
1 ATATGTTGGACGAGAAA
67631 ATATGTTGGACGAGAAA
1 ATATGTTGGACGAGAAA
67648 CATCTGACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 5 0.33
17 5 0.33
ACGTcount: A:0.44, C:0.06, G:0.28, T:0.22
Consensus pattern (17 bp):
ATATGTTGGACGAGAAA
Found at i:75932 original size:39 final size:39
Alignment explanation
Indices: 75889--76009 Score: 179
Period size: 39 Copynumber: 3.1 Consensus size: 39
75879 TAGAAAAGTA
75889 ATGGTGGGCACGACCTTATGTGTAAGCACTTCGGTGCAT
1 ATGGTGGGCACGACCTTATGTGTAAGCACTTCGGTGCAT
* * *
75928 ATGGTGGGCACGACCTTATGTGTAAGAACTTCAGTGAAT
1 ATGGTGGGCACGACCTTATGTGTAAGCACTTCGGTGCAT
* *
75967 ATGGTGGGCATGACCTTATGTGTATTATCACTTCGGTGCAT
1 ATGGTGGGCACGACCTTATGTGTA--AGCACTTCGGTGCAT
76008 AT
1 AT
76010 TTGACTCGAA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 59 0.82
41 13 0.18
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (39 bp):
ATGGTGGGCACGACCTTATGTGTAAGCACTTCGGTGCAT
Found at i:76789 original size:39 final size:40
Alignment explanation
Indices: 76745--76831 Score: 131
Period size: 39 Copynumber: 2.2 Consensus size: 40
76735 TACTCACTTC
*
76745 TGCATATGGTGGACACGACCTTATGTGTA-AGCACTTCGG
1 TGCATATGGTGGACACGACCTTATGTGTATAGCACTTCGA
* *
76784 TGCATATGGTGGGCATGACCTTATGTGTATTAGCACTTCGA
1 TGCATATGGTGGACACGACCTTATGTGTA-TAGCACTTCGA
76825 TGCATAT
1 TGCATAT
76832 TTGACTTGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 27 0.63
41 16 0.37
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (40 bp):
TGCATATGGTGGACACGACCTTATGTGTATAGCACTTCGA
Found at i:77655 original size:2 final size:2
Alignment explanation
Indices: 77648--77687 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
77638 TAGGTGTCAC
77648 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77688 TAAAACCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78319 original size:47 final size:47
Alignment explanation
Indices: 78169--78594 Score: 658
Period size: 47 Copynumber: 9.1 Consensus size: 47
78159 TACATTTAAA
* *
78169 TTATGGCATCCTATCATGCCTTAATGCATCCTTTCATGTA-TTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
*
78215 TTATGGCATCCTTTCATGCCTTAATGCAT-CATTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
* * * *
78261 TTATGGAATCCTTCCATGCCTTAATGCATTCTTTCACGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
* *
78308 TTATGGTATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
*
78355 TTATGTCATCCTTTCATGCCTTAATGCATCCTTTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCC-TTTCATGCATTTTTAG
* *
78403 TCATGGCATCCTTTCATGCCTTAATGCATCCTTTCATACATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
* * *
78450 TTATGACATCCTTTCAAGCCTTAATGCATCATTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
* * *
78497 TTATGGCATTCTTTCATGCATTAATGCATCCTTTCATGCATTTTTAT
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
*
78544 TTATGGCATCCTTTCATGTCTTAATGCATCCTTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
78591 TTAT
1 TTAT
78595 TGCCTTGCTT
Statistics
Matches: 344, Mismatches: 33, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
45 8 0.02
46 61 0.18
47 230 0.67
48 45 0.13
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.45
Consensus pattern (47 bp):
TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
Found at i:78437 original size:142 final size:141
Alignment explanation
Indices: 78169--78594 Score: 667
Period size: 142 Copynumber: 3.0 Consensus size: 141
78159 TACATTTAAA
* * *
78169 TTATGGCATCCTATCATGCCTTAATGCATCCTTTCATGTA-TTTTAGTTATGGCATCCTTTCATG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAGTTATGGCATCCTTTCATG
* * * *
78233 CCTTAATGCAT-CATTCATGCATTTTTAGTTATGGAATCCTTCCATGCCTTAATGCATTCTTTCA
66 CCTTAATGCATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCA
*
78297 CGCATTTTTAG
131 TGCATTTTTAG
* *
78308 TTATGGTATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAGTTATGTCATCCTTTCATG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAGTTATGGCATCCTTTCATG
*
78373 CCTTAATGCATCCTTTTCATGCATTTTTAGTCATGGCATCCTTTCATGCCTTAATGCATCCTTTC
66 CCTTAATGCATCC-TTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTC
*
78438 ATACATTTTTAG
130 ATGCATTTTTAG
* * *
78450 TTATGACATCCTTTCAAGCCTTAATGCATCATTTCATGCATTTTTAGTTATGGCATTCTTTCATG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAGTTATGGCATCCTTTCATG
* * *
78515 CATTAATGCATCCTTTCATGCATTTTTATTTATGGCATCCTTTCATGTCTTAATGCATCCTTTCA
66 CCTTAATGCATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCA
78580 TGCATTTTTAG
131 TGCATTTTTAG
78591 TTAT
1 TTAT
78595 TGCCTTGCTT
Statistics
Matches: 262, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
139 36 0.14
140 34 0.13
141 64 0.24
142 128 0.49
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.45
Consensus pattern (141 bp):
TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAGTTATGGCATCCTTTCATG
CCTTAATGCATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCA
TGCATTTTTAG
Found at i:78942 original size:20 final size:21
Alignment explanation
Indices: 78917--78971 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
78907 ATATTGCCTA
78917 GTATCGATACCCT-TACCATG
1 GTATCGATACCCTATACCATG
* *
78937 GTATCGATACTACTATACTATG
1 GTATCGATAC-CCTATACCATG
78959 GTATCGATACCCT
1 GTATCGATACCCT
78972 CTTACAGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.33
21 4 0.13
22 16 0.53
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (21 bp):
GTATCGATACCCTATACCATG
Found at i:78983 original size:95 final size:96
Alignment explanation
Indices: 78855--79043 Score: 256
Period size: 95 Copynumber: 2.0 Consensus size: 96
78845 CCCATACTTT
* * *
78855 TATACTATGGTACCGATACCCCCTTCCGGTATCGATACCAAAATT-AACTTCGAT-ATTGCCTAG
1 TATACTATGGTACCGATACCCCCTTACAGTATCGATACCAAAATTGAA-TTCAATGATTGCCTAG
* *
78918 TATCGATACCCTTACCATGGTATCGATACTAC
65 TATCAATACCCTTACAATGGTATCGATACTAC
* * * * * *
78950 TATACTATGGTATCGATACCCTCTTACAGTATCGATACCAAAATTGTATTCAATGTTTGCTTGGT
1 TATACTATGGTACCGATACCCCCTTACAGTATCGATACCAAAATTGAATTCAATGATTGCCTAGT
79015 ATCAATACCCTTACAATGGTATCGATACT
66 ATCAATACCCTTACAATGGTATCGATACT
79044 GCCTCAACAG
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
95 46 0.57
96 35 0.43
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (96 bp):
TATACTATGGTACCGATACCCCCTTACAGTATCGATACCAAAATTGAATTCAATGATTGCCTAGT
ATCAATACCCTTACAATGGTATCGATACTAC
Found at i:79056 original size:20 final size:21
Alignment explanation
Indices: 79033--79084 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
79023 CCTTACAATG
*
79033 GTATCGATACTGCCTCAA-CA
1 GTATCGATACTGACTCAATCA
* *
79053 GTATCGATACTGATTGAATCA
1 GTATCGATACTGACTCAATCA
79074 GTATCGATACT
1 GTATCGATACT
79085 ATACAACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (21 bp):
GTATCGATACTGACTCAATCA
Found at i:85283 original size:47 final size:47
Alignment explanation
Indices: 85171--85564 Score: 578
Period size: 47 Copynumber: 8.4 Consensus size: 47
85161 AATATTTAAA
* *
85171 TTATGGCATCCTATT-ATGCCTTAATGCATCATTCCATGCA-TTATAG
1 TTATGGCATCCT-TTCATGCCTTAATGCATCATTTCATGCATTTTTAG
* *
85217 TTATGACATCCTTTCATGCCTTAATGCATTATTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
*
85264 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
* * *
85311 TTATGGCATCCATTCATGCCTTAATGCATCCTTTCATGCATATTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
* *
85358 ATATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
* *
85405 TTATGGCATCCTTTCAAGCCTTAATGCATCATTTCTTGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
* * * *
85452 TTATGACATTCTTTCATGCCTTAATTCATCATTTCATGAATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
* * *
85499 TTATGGCATCCTTTCAAGCCTTAATGCATCCTTTCTTGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
85546 TTAAT-GCATCCTTTCATGC
1 TT-ATGGCATCCTTTCATGC
85565 ATTTTTAGTC
Statistics
Matches: 315, Mismatches: 30, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
45 2 0.01
46 34 0.11
47 277 0.88
48 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (47 bp):
TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
Found at i:85294 original size:20 final size:20
Alignment explanation
Indices: 85223--85396 Score: 105
Period size: 20 Copynumber: 7.7 Consensus size: 20
85213 ATAGTTATGA
85223 CATCCTTTCATGCCTTAATG
1 CATCCTTTCATGCCTTAATG
** *
85243 CATTATTTCATGCATTTTTAGTTATGG
1 CATCCTTTCATGC---CTTA---AT-G
85270 CATCCTTTCATGCCTTAATG
1 CATCCTTTCATGCCTTAATG
*
85290 CATCCTTTCATGCATTTTTAGTTATGG
1 CATCCTTTCATGC---CTTA---AT-G
*
85317 CATCCATTCATGCCTTAATG
1 CATCCTTTCATGCCTTAATG
*
85337 CATCCTTTCATGCATATTTAGATATGG
1 CATCCTTTCATGC---CTT--A-AT-G
85364 CATCCTTTCATGCCTTAATG
1 CATCCTTTCATGCCTTAATG
85384 CATCCTTTCATGC
1 CATCCTTTCATGC
85397 ATTTTTAGTT
Statistics
Matches: 121, Mismatches: 12, Indels: 42
0.69 0.07 0.24
Matches are distributed among these distances:
20 52 0.43
21 6 0.05
22 1 0.01
23 8 0.07
24 8 0.07
25 1 0.01
26 6 0.05
27 39 0.32
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.43
Consensus pattern (20 bp):
CATCCTTTCATGCCTTAATG
Found at i:85327 original size:27 final size:25
Alignment explanation
Indices: 85248--85569 Score: 139
Period size: 27 Copynumber: 13.5 Consensus size: 25
85238 TAATGCATTA
85248 TTTCATGCATTTTTAGTTATGGCATCC
1 TTTCATGCA-TTTTAG-TATGGCATCC
*
85275 TTTCATGC--CTTA--AT-GCATCC
1 TTTCATGCATTTTAGTATGGCATCC
85295 TTTCATGCATTTTTAGTTATGGCATCC
1 TTTCATGCA-TTTTAG-TATGGCATCC
* *
85322 ATTCATGC--CTTA--AT-GCATCC
1 TTTCATGCATTTTAGTATGGCATCC
85342 TTTCATGCATATTTAGATATGGCATCC
1 TTTCATGCAT-TTTAG-TATGGCATCC
*
85369 TTTCATGC--CTTA--AT-GCATCC
1 TTTCATGCATTTTAGTATGGCATCC
85389 TTTCATGCATTTTTAGTTATGGCATCC
1 TTTCATGCA-TTTTAG-TATGGCATCC
* * *
85416 TTTCAAGC--CTTA--AT-GCATCA
1 TTTCATGCATTTTAGTATGGCATCC
* * *
85436 TTTCTTGCATTTTTAGTTATGACATTC
1 TTTCATGCA-TTTTAG-TATGGCATCC
* * *
85463 TTTCATGC--CTTA--AT-TCATCA
1 TTTCATGCATTTTAGTATGGCATCC
*
85483 TTTCATGAATTTTTAGTTATGGCATCC
1 TTTCATGCA-TTTTAG-TATGGCATCC
* *
85510 TTTCAAGC--CTTA--AT-GCATCC
1 TTTCATGCATTTTAGTATGGCATCC
*
85530 TTTCTTGCATTTTTAGTTAAT-GCATCC
1 TTTCATGCA-TTTTAG-T-ATGGCATCC
85557 TTTCATGCATTTT
1 TTTCATGCATTTT
85570 TAGTCATGCT
Statistics
Matches: 220, Mismatches: 33, Indels: 85
0.65 0.10 0.25
Matches are distributed among these distances:
20 74 0.34
21 12 0.05
23 18 0.08
24 18 0.08
26 14 0.06
27 84 0.38
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (25 bp):
TTTCATGCATTTTAGTATGGCATCC
Found at i:86064 original size:20 final size:21
Alignment explanation
Indices: 86039--86092 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 21
86029 ATGTTGCCTA
86039 GTATCGATACCCT-TACCATG
1 GTATCGATACCCTATACCATG
* *
86059 GTATCGATACTACTATACTATG
1 GTATCGATAC-CCTATACCATG
86081 GTATCGATACCC
1 GTATCGATACCC
86093 CCTTACGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 10 0.34
21 3 0.10
22 16 0.55
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (21 bp):
GTATCGATACCCTATACCATG
Found at i:86105 original size:95 final size:96
Alignment explanation
Indices: 85942--86165 Score: 265
Period size: 95 Copynumber: 2.3 Consensus size: 96
85932 CCAGGCTCCA
* * * * **
85942 TAGTATCGATACTAC-TACCCTAGTACCGATACTTTTATACTATGGTACCGATACCCCCTTCTAG
1 TAGTATCGATAC-CCTTACCATGGTATCGATACTACTATACTATGGTACCGATACCCCCTTCTAG
* *
86006 TATCGATACTAAAATTAGCTTCGATG-TTGCC
65 TATCGATACCAAAATTAGATTCGATGTTTGCC
* *
86037 TAGTATCGATACCCTTACCATGGTATCGATACTACTATACTATGGTATCGATACCCCCTTAC-GG
1 TAGTATCGATACCCTTACCATGGTATCGATACTACTATACTATGGTACCGATACCCCCTT-CTAG
* * *
86101 TATCGATACCAAAATTATATTTGATGTTTGCT
65 TATCGATACCAAAATTAGATTCGATGTTTGCC
* * *
86133 TGGTATCGATACCCTTACAATGGTATTGATACT
1 TAGTATCGATACCCTTACCATGGTATCGATACT
86166 GCCTCAACGG
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
94 1 0.01
95 74 0.67
96 35 0.32
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (96 bp):
TAGTATCGATACCCTTACCATGGTATCGATACTACTATACTATGGTACCGATACCCCCTTCTAGT
ATCGATACCAAAATTAGATTCGATGTTTGCC
Found at i:87408 original size:16 final size:16
Alignment explanation
Indices: 87370--87408 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
87360 ATTTATTAAG
87370 GTTGAAAAGGGTAAAA
1 GTTGAAAAGGGTAAAA
** *
87386 GGGGAAAATGGTAAAA
1 GTTGAAAAGGGTAAAA
87402 GTTGAAA
1 GTTGAAA
87409 CTTGGTTCTC
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.33, T:0.18
Consensus pattern (16 bp):
GTTGAAAAGGGTAAAA
Found at i:93702 original size:200 final size:199
Alignment explanation
Indices: 93347--94881 Score: 2087
Period size: 200 Copynumber: 7.7 Consensus size: 199
93337 CACATAATAA
* * * * *
93347 GTATCGATCCCAAAAACATCGAAACAAAGAATTATAATATAAAAGGTAAATTTACAATATAACTG
1 GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATGTAAC-G
* * * *
93412 GTAGATATATACCGATTTTATGAGAAAATAGGTCTACATAATGTATCGACACTCTTTAAATTTGT
65 GTATAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGT
* * **
93477 GTCGATACGTTTTATCCAGAATCAATATCCAAACGAGGTGTACGCAATAAGTGTCGATACATTTA
130 GTCGATACTTTTTGTCCAGAATCAATGGCCAAACGAGGTGTACGCAATAAGTGTCGATACATTTA
93542 AAATT
195 AAATT
* * * *
93547 GTATTGATCCCAAAAACATCAAAACAGATAATTATAATGTAATATGCAAATTTACAATGTAATCG
1 GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATGTAA-CG
* *
93612 GTATAAATATACCAGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTATAAATTTGT
65 GTATAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGT
*
93677 GTCGATACTTTTTGTCCATAATCAATGGCCAAACGAGGTGTACGCAATAAGTGTCGATACATTTA
130 GTCGATACTTTTTGTCCAGAATCAATGGCCAAACGAGGTGTACGCAATAAGTGTCGATACATTTA
93742 AAATT
195 AAATT
* * *
93747 GTATCGATCCCAAAAACATAGAAACCGATAAATATAATGTAATAGGTAAATTTACAATGTAACCG
1 GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATGTAA-CG
* * * *
93812 GTATAAATATACCGGTTTTATGAGAGAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGC
65 GTATAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGT
* * * * * *
93877 GTCGATACATTTTGTCCAGAATGAAT-GCCAAACGGGGTGCACAC-ATAAAGTGTCGATATATTT
130 GTCGATACTTTTTGTCCAGAATCAATGGCCAAACGAGGTGTACGCAAT-AAGTGTCGATACATTT
*
93940 ATTAAA-A
194 A--AAATT
*
93947 GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATATAACTG
1 GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATGTAAC-G
* * * * *
94012 GTAGATATACACCGGTTTTATGAGAAAATAGGTCTACATAATTTATCGACACTTTTTAAATATGT
65 GTATAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGT
* *
94077 GTCGATACTTTTTGTCCAGAATCAATGGCCAAACAAGGTGCACGCAATAAGTGTCGATACATTTA
130 GTCGATACTTTTTGTCCAGAATCAATGGCCAAACGAGGTGTACGCAATAAGTGTCGATACATTTA
94142 AAATT
195 AAATT
* * *
94147 GTATCGATCCCAAAAACATCGAAACAAATAATTATAATATAATAGGTAAATTTACAATATAACTG
1 GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATGTAAC-G
* * * * *
94212 GTAGATACATACCGATTTTATGAGAAAATAGGTCTACATAATGTATCGACACTCTTTAAATTTGT
65 GTATAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGT
**
94277 GTCGATACTTTTTGTCCAGAATCAATATCCAAACGAGGTGTACGCAATAAGTGTCGATACATTTA
130 GTCGATACTTTTTGTCCAGAATCAATGGCCAAACGAGGTGTACGCAATAAGTGTCGATACATTTA
94342 AAATT
195 AAATT
* * *
94347 GTATCGATCCCAAAAACATCGAAACATATAATTATAATGTAATAGGTAAATTTATAACGTAATCG
1 GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATGTAA-CG
* * *
94412 GTATAAATATACCAGTTTTATGAGAAAATAGGTCTACATAATGTATCAACACTTTATAAATTTGT
65 GTATAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGT
* * *
94477 GTCGATACTTTTTATCCATAATCAATGGCCAAACGAGGTGTACGCAATAAGTGTCTATACATTTA
130 GTCGATACTTTTTGTCCAGAATCAATGGCCAAACGAGGTGTACGCAATAAGTGTCGATACATTTA
94542 AAATT
195 AAATT
* * * * *
94547 GTATCGATCCCAAAAATATCGAAACCGATAAATATAATATAATAGGTAAATTTACAATGTAACAG
1 GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATGTAACGG
* * *
94612 TATAAATATACCGGTTTTATGAGAGAATAAGTCAACATAATGTATCGACACTTTTTAAATTTGTG
66 TATAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTG
* * * *
94677 TTGATACATTTTT-TCCAGAATGAAT-GCCAAAC-AGG-GTGCACACATAAAGTGTCGATACATT
131 TCGATAC-TTTTTGTCCAGAATCAATGGCCAAACGAGGTGTACGCA-AT-AAGTGTCGATACATT
*
94738 TATTAAA-A
193 TA--AAATT
* * * * *
94746 GTATCGATCCCAAAAATATAGAAACCGATAATTACAATGTAATAGGTACATTTACAATGTAATCG
1 GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATGTAA-CG
* * * * ** * * *
94811 GTATAAATATATCGGTCTAATTAGAAAAGCGGTCAACATAATGTATCGAGACTTTTTAAATTTGA
65 GTATAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGT
94876 GTCGAT
130 GTCGAT
94882 GCCTTTTTAA
Statistics
Matches: 1190, Mismatches: 130, Indels: 30
0.88 0.10 0.02
Matches are distributed among these distances:
196 5 0.00
197 5 0.00
198 25 0.02
199 169 0.14
200 948 0.80
201 36 0.03
202 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (199 bp):
GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTACAATGTAACGG
TATAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTG
TCGATACTTTTTGTCCAGAATCAATGGCCAAACGAGGTGTACGCAATAAGTGTCGATACATTTAA
AATT
Found at i:95131 original size:23 final size:23
Alignment explanation
Indices: 95097--95141 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
95087 ATTGGACTCT
95097 TTTTTTCCTTAATGTGTTTGTGG
1 TTTTTTCCTTAATGTGTTTGTGG
*
95120 TTTTTTCGTTAATGTGTTTGTG
1 TTTTTTCCTTAATGTGTTTGTG
95142 TTCCAATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.09, C:0.07, G:0.22, T:0.62
Consensus pattern (23 bp):
TTTTTTCCTTAATGTGTTTGTGG
Found at i:95231 original size:15 final size:15
Alignment explanation
Indices: 95211--95260 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 15
95201 GTCTTTCTCA
95211 AAGCTCTTCTCAACC
1 AAGCTCTTCTCAACC
95226 AAGCTCTTCTCAACGAC
1 AAGCTCTTCTCAAC--C
*
95243 AACCTCCTTCTCAACC
1 AAGCT-CTTCTCAACC
95259 AA
1 AA
95261 TCACTTCTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
15 14 0.45
16 3 0.10
17 5 0.16
18 9 0.29
ACGTcount: A:0.30, C:0.40, G:0.06, T:0.24
Consensus pattern (15 bp):
AAGCTCTTCTCAACC
Found at i:106311 original size:21 final size:20
Alignment explanation
Indices: 106256--106311 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
106246 TAACCCACAC
*
106256 ATATATCATAT-CATATAAT
1 ATATATCACATACATATAAT
*
106275 -TCATATCACAAAACATATATAT
1 AT-ATATCAC-ATACATATA-AT
106297 ATATATCACATACAT
1 ATATATCACATACAT
106312 TGTATTCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
18 1 0.03
19 6 0.21
20 1 0.03
21 11 0.38
22 9 0.31
23 1 0.03
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATATCACATACATATAAT
Found at i:106634 original size:25 final size:26
Alignment explanation
Indices: 106583--106634 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
106573 GTAACATGGG
*
106583 CATTTTCACTTATCTCATTTCACTATA
1 CATTTTCAC-TATCACATTTCACTATA
106610 CATTTTCA-TATCACATGTTCA-TATA
1 CATTTTCACTATCACAT-TTCACTATA
106635 AGCTCATAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 11 0.48
26 4 0.17
27 8 0.35
ACGTcount: A:0.29, C:0.23, G:0.02, T:0.46
Consensus pattern (26 bp):
CATTTTCACTATCACATTTCACTATA
Found at i:114128 original size:17 final size:17
Alignment explanation
Indices: 114092--114135 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
114082 GTGTGTGTTA
* * *
114092 CTCGAACGAGAGTTTTT
1 CTCGAAAGAGAATTTCT
114109 CTCGAAAGAGAATTTCT
1 CTCGAAAGAGAATTTCT
114126 CTC-AAAGAGA
1 CTCGAAAGAGA
114136 GAGAAGGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (17 bp):
CTCGAAAGAGAATTTCT
Found at i:119591 original size:78 final size:78
Alignment explanation
Indices: 119456--119610 Score: 249
Period size: 78 Copynumber: 2.0 Consensus size: 78
119446 GTTAATATTT
* *
119456 TTTAACATTTTCGGTAAAGCGCTACCTAAAACATTATTTTTTTACCGAAAATATTAATATTTAGC
1 TTTAACATTTTCGGTAAAGCGCTACCTAAAACATTATTTTTCTACCGAAAATATTAATATTGAGC
119521 GCTACCTAAAATA
66 GCTACCTAAAATA
* * *
119534 TTTAACA-TTTCTGGTAAAGCGCTACCTAAAACATTATTTTTCTACTGGAAATGTTAATATTGAG
1 TTTAACATTTTC-GGTAAAGCGCTACCTAAAACATTATTTTTCTACCGAAAATATTAATATTGAG
119598 CGCTACCTAAAAT
65 CGCTACCTAAAAT
119611 GTTTTTTTCT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
77 4 0.06
78 67 0.94
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (78 bp):
TTTAACATTTTCGGTAAAGCGCTACCTAAAACATTATTTTTCTACCGAAAATATTAATATTGAGC
GCTACCTAAAATA
Found at i:121826 original size:54 final size:54
Alignment explanation
Indices: 121747--122143 Score: 533
Period size: 54 Copynumber: 7.4 Consensus size: 54
121737 TTCTTTGAGA
* * * * *
121747 TGCACACATATTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGGC
1 TGCACACTTAGTGCCTATACGGTCGTTCATAAACACATTATGAATTTCGTGGGT
* *
121801 TGCACACTTAGTGCCTATACAGTCGTTCATAAACACATTATGAATTTTGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATAAACACATTATGAATTTCGTGGGT
* * * * **
121855 TGCACACTTAGTTCCTATATGGTCATTCATAAATACATTATGAATCCCGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATAAACACATTATGAATTTCGTGGGT
* * * *
121909 TGCACACTTATTGCCTACATGGTCGTTCATAAACACATTATGAATTTTGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATAAACACATTATGAATTTCGTGGGT
* * * *
121963 AGCACACTTAGTGCCTGTACGATCGTTCATAAACACATTATGAATTCCGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATAAACACATTATGAATTTCGTGGGT
* *
122017 TGAACACTTAGTGCCTTTACGGTCGTTCATAAACACATTATGAATTTCGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATAAACACATTATGAATTTCGTGGGT
** * * * *
122071 TATACAGTTAGTGCCTATACGGTTGTTTATAAACACATTATGAATTCCGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATAAACACATTATGAATTTCGTGGGT
122125 TGCACACTTAGTGCCTATA
1 TGCACACTTAGTGCCTATA
122144 GTACACATAG
Statistics
Matches: 297, Mismatches: 46, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 297 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (54 bp):
TGCACACTTAGTGCCTATACGGTCGTTCATAAACACATTATGAATTTCGTGGGT
Found at i:122605 original size:14 final size:14
Alignment explanation
Indices: 122588--122617 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
122578 CATAGTACCC
122588 ACATCAGTATCGAT
1 ACATCAGTATCGAT
122602 ACATCAGTATCGAT
1 ACATCAGTATCGAT
122616 AC
1 AC
122618 TAATTGCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (14 bp):
ACATCAGTATCGAT
Found at i:128577 original size:54 final size:54
Alignment explanation
Indices: 128540--128804 Score: 374
Period size: 54 Copynumber: 4.9 Consensus size: 54
128530 ACCGATACAA
*
128540 TCATTCATAAACATATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATACGG
1 TCATTCATAAACACATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATACGG
* * * * ** **
128594 TCTTTCATAAACACAATATGAATTATATGGACTGCACACTTAGTGCCTATATAG
1 TCATTCATAAACACATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATACGG
* *
128648 TCCTTCAT-AA-ACATTATGAATTGC-GTGGGTTGCACACTTAGTGCCTATATGG
1 TCATTCATAAACACATTATGAATT-CTGTGGGTTGCACACTTAGTGCCTATACGG
* *
128700 TCGTTCATAAACACATTATGAATTATGTGGGTTGCACACTTAGTGCCTATACGG
1 TCATTCATAAACACATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATACGG
*
128754 TCATTCATAAACACATTATGAATTCTGTGAGTTGCACACTTAGTGCCTATA
1 TCATTCATAAACACATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATA
128805 GTACACATAG
Statistics
Matches: 185, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
52 42 0.23
53 4 0.02
54 139 0.75
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (54 bp):
TCATTCATAAACACATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATACGG
Found at i:128707 original size:106 final size:106
Alignment explanation
Indices: 128534--128804 Score: 391
Period size: 106 Copynumber: 2.5 Consensus size: 106
128524 CATAATACCG
* *
128534 ATACAATCATTCATAAACATATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATACGGTCTTT
1 ATACAGTCATTCATAAAC--ATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTT
128599 CATAAACACAATATGAATTATATGGACTGCACACTTAGTGCCT
64 CATAAACACAATATGAATTATATGGACTGCACACTTAGTGCCT
* * *
128642 ATATAGTCCTTCATAAACATTATGAATTGC-GTGGGTTGCACACTTAGTGCCTATATGGTCGTTC
1 ATACAGTCATTCATAAACATTATGAATT-CTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTC
* * **
128706 ATAAACACATTATGAATTATGTGGGTTGCACACTTAGTGCCT
65 ATAAACACAATATGAATTATATGGACTGCACACTTAGTGCCT
* *
128748 ATACGGTCATTCATAAACACATTATGAATTCTGTGAGTTGCACACTTAGTGCCTATA
1 ATACAGTCATTCAT-AA-ACATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATA
128805 GTACACATAG
Statistics
Matches: 146, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
106 91 0.62
107 4 0.03
108 51 0.35
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (106 bp):
ATACAGTCATTCATAAACATTATGAATTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCA
TAAACACAATATGAATTATATGGACTGCACACTTAGTGCCT
Found at i:129348 original size:20 final size:20
Alignment explanation
Indices: 129323--129373 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
129313 TTTAAACCTA
129323 TAGTGTCGATATTATTCTTT
1 TAGTGTCGATATTATTCTTT
129343 TAGTGTCGATATTATTCTTT
1 TAGTGTCGATATTATTCTTT
*
129363 TAGTATCGATA
1 TAGTGTCGATA
129374 CCCTTACCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.51
Consensus pattern (20 bp):
TAGTGTCGATATTATTCTTT
Found at i:132701 original size:14 final size:14
Alignment explanation
Indices: 132682--132713 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
132672 TTATTAATTT
132682 GTAGGACCTTTGTA
1 GTAGGACCTTTGTA
132696 GTAGGACCTTTGTA
1 GTAGGACCTTTGTA
132710 GTAG
1 GTAG
132714 TCTTATCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.12, G:0.31, T:0.34
Consensus pattern (14 bp):
GTAGGACCTTTGTA
Found at i:134510 original size:32 final size:32
Alignment explanation
Indices: 134469--134532 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
134459 CGAGCCGGAA
134469 GGTAATCTATTGAGCCATGCCCTGACGTTATC
1 GGTAATCTATTGAGCCATGCCCTGACGTTATC
134501 GGTAATCTATTGAGCCATGCCCTGACGTTATC
1 GGTAATCTATTGAGCCATGCCCTGACGTTATC
134533 TTTCAAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (32 bp):
GGTAATCTATTGAGCCATGCCCTGACGTTATC
Found at i:143565 original size:22 final size:21
Alignment explanation
Indices: 143509--143565 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
143499 CCCTTCAAGT
*
143509 AAATATATAAATAAATTATATG
1 AAATA-ATAAATAAATTATATA
*
143531 AAATAAATAAATAAATTATTTAA
1 AAAT-AATAAATAAATTATAT-A
*
143554 AAATAATGAATA
1 AAATAATAAATA
143566 CAAAAATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 25 0.83
23 5 0.17
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (21 bp):
AAATAATAAATAAATTATATA
Found at i:144967 original size:19 final size:18
Alignment explanation
Indices: 144943--144988 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
144933 TTAATTCAGT
144943 CTTTTTTATATTTTATTC
1 CTTTTTTATATTTTATTC
* * *
144961 CTATTTTAATCTTTTTTTC
1 CT-TTTTTATATTTTATTC
144980 CTTTTTTAT
1 CTTTTTTAT
144989 TTATACAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.72
Consensus pattern (18 bp):
CTTTTTTATATTTTATTC
Found at i:144967 original size:20 final size:21
Alignment explanation
Indices: 144921--144967 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
144911 CCCTCTATTT
*
144921 TATTTTTTTATTTTAATTCAG
1 TATTTTTTTATTTTAATTCAC
*
144942 TCTTTTTTATATTTT-ATTC-C
1 TATTTTTT-TATTTTAATTCAC
144962 TATTTT
1 TATTTT
144968 AATCTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 5 0.23
21 11 0.50
22 6 0.27
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (21 bp):
TATTTTTTTATTTTAATTCAC
Found at i:145162 original size:9 final size:9
Alignment explanation
Indices: 145096--145168 Score: 51
Period size: 9 Copynumber: 7.7 Consensus size: 9
145086 TTTTTCCTTC
145096 TTATTT-TT
1 TTATTTATT
145104 TTATTTATT
1 TTATTTATT
*
145113 CTATTTAATT
1 TTATTT-ATT
145123 CCATTATTT-TT
1 ---TTATTTATT
*
145134 TCATTTCATT
1 TTATTT-ATT
*
145144 TCATTTTATT
1 TTA-TTTATT
145154 TTATTTATT
1 TTATTTATT
145163 TTATTT
1 TTATTT
145169 TTTCCTTTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
8 11 0.21
9 19 0.36
10 13 0.25
11 5 0.09
13 5 0.09
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (9 bp):
TTATTTATT
Found at i:155708 original size:6 final size:6
Alignment explanation
Indices: 155697--155749 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
155687 AAAAAAATAG
* * * *
155697 AAGAAA AAGAAA AATAAA TAGAAA AATAAA AATAAA AAG-AA AAG-AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA
155743 AAGAAA A
1 AAGAAA A
155750 TAAGGTGGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
5 10 0.25
6 30 0.75
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.08
Consensus pattern (6 bp):
AAGAAA
Found at i:155719 original size:18 final size:17
Alignment explanation
Indices: 155689--155744 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 17
155679 CTAAATTGAA
*
155689 AAAAATAGAAGAAAAAG
1 AAAAATAAAAGAAAAAG
*
155706 AAAAATAAATAGAAAAAT
1 AAAAATAAA-AGAAAAAG
155724 AAAAATAAAA-AGAAAAG
1 AAAAATAAAAGA-AAAAG
155741 AAAA
1 AAAA
155745 GAAAATAAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 1 0.03
17 17 0.50
18 16 0.47
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (17 bp):
AAAAATAAAAGAAAAAG
Found at i:156371 original size:21 final size:21
Alignment explanation
Indices: 156345--156385 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
156335 CATATTGAAG
156345 AATTCAAAATCAAGAATCAAA
1 AATTCAAAATCAAGAATCAAA
* * *
156366 AATTCAGATTCCAGAATCAA
1 AATTCAAAATCAAGAATCAA
156386 GAGTCATCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.17, G:0.07, T:0.22
Consensus pattern (21 bp):
AATTCAAAATCAAGAATCAAA
Found at i:158861 original size:17 final size:19
Alignment explanation
Indices: 158833--158881 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
158823 TATTTTGAAA
158833 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
158851 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
158870 CACCGATGCACT
1 CATCGATGCACT
158882 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:164691 original size:24 final size:24
Alignment explanation
Indices: 164664--164744 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 24
164654 ACACTTAACA
164664 GTGCATCGATGCATCCCTTTGAAT
1 GTGCATCGATGCATCCCTTTGAAT
* *
164688 GTGCATCGATTCAT-CATGTTG-A-
1 GTGCATCGATGCATCCCT-TTGAAT
*
164710 -TGCACCGATGCA-CGCC-TTGAAT
1 GTGCATCGATGCATC-CCTTTGAAT
164732 GTGCATCGATGCA
1 GTGCATCGATGCA
164745 CGGGGTCATG
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
20 3 0.07
21 11 0.24
22 1 0.02
23 14 0.31
24 16 0.36
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (24 bp):
GTGCATCGATGCATCCCTTTGAAT
Found at i:166917 original size:2 final size:2
Alignment explanation
Indices: 166910--166986 Score: 154
Period size: 2 Copynumber: 38.5 Consensus size: 2
166900 CAGCTAAAGC
166910 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
166952 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
166987 CAATTGGCTA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 75 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:167558 original size:46 final size:45
Alignment explanation
Indices: 167463--167614 Score: 175
Period size: 45 Copynumber: 3.4 Consensus size: 45
167453 GCACCAATCC
** *
167463 ATGCATCGATGCAC-CATGAATTAAATTG-AACATCGAATGCATTTC
1 ATGCATCGATGCACTCA-GAA-TATTTTGAAACATCGAATGCATTTG
*
167508 ATGCATCGATGCACTGAGAAT-TTTATGAAAACATCGAATGCATTTG
1 ATGCATCGATGCACTCAGAATATTT-TG-AAACATCGAATGCATTTG
* ** *
167554 ATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACTTG
1 ATGCATCGATGCACTCAGAATATTTTGAAACATCGAATGCATTTG
167599 ATGCATCGATGCACTC
1 ATGCATCGATGCACTC
167615 TTAGTGCACC
Statistics
Matches: 93, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 50 0.54
46 36 0.39
47 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (45 bp):
ATGCATCGATGCACTCAGAATATTTTGAAACATCGAATGCATTTG
Found at i:167612 original size:17 final size:19
Alignment explanation
Indices: 167584--167632 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
167574 TATTTTGAAA
167584 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
167602 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
167621 CACCGATGCACT
1 CATCGATGCACT
167633 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:167615 original size:45 final size:46
Alignment explanation
Indices: 167491--167615 Score: 173
Period size: 46 Copynumber: 2.7 Consensus size: 46
167481 AATTAAATTG
* **
167491 AACATCGAATGCATTTCATGCATCGATGCACTGAGAATTTTATGAA
1 AACATCGAATGCATTTGATGCATCGATGCACTCTGAATTTTATGAA
**
167537 AACATCGAATGCATTTGATGCATCGATGCACTCTGGCTATTT-TG-A
1 AACATCGAATGCATTTGATGCATCGATGCACTCTGAAT-TTTATGAA
*
167582 AACATCGAATGCACTTGATGCATCGATGCACTCT
1 AACATCGAATGCATTTGATGCATCGATGCACTCT
167616 TAGTGCACCG
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
45 34 0.47
46 35 0.49
47 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (46 bp):
AACATCGAATGCATTTGATGCATCGATGCACTCTGAATTTTATGAA
Found at i:168653 original size:28 final size:27
Alignment explanation
Indices: 168596--168654 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
168586 TTACCCTCTA
* * *
168596 TTTTATTTTTTATTTTAATTTAGTCAT
1 TTTTATATTTTATTCTAATTTAATCAT
* *
168623 TTTTATATTTTATTCCTATTTTAATCTT
1 TTTTATATTTTATT-CTAATTTAATCAT
168651 TTTT
1 TTTT
168655 CCTTTTTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (27 bp):
TTTTATATTTTATTCTAATTTAATCAT
Found at i:172143 original size:10 final size:11
Alignment explanation
Indices: 172112--172152 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
172102 CTTTTGGATT
*
172112 TTTTTATTGTTA
1 TTTTTATT-TTC
172124 TTTTTA-TTTC
1 TTTTTATTTTC
172134 -TTTTATTTTC
1 TTTTTATTTTC
172144 TTTTTATTT
1 TTTTTATTT
172153 CATTTGGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
9 5 0.19
10 6 0.23
11 9 0.35
12 6 0.23
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.80
Consensus pattern (11 bp):
TTTTTATTTTC
Found at i:172147 original size:20 final size:20
Alignment explanation
Indices: 172094--172153 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
172084 TATATATATA
*
172094 TTTT-TTTTCTTTTGGATTT-
1 TTTTATTTTCTTTT-TATTTC
*
172113 TTTTATTGTTATTTTTATTTC
1 TTTTATT-TTCTTTTTATTTC
172134 TTTTATTTTCTTTTTATTTC
1 TTTTATTTTCTTTTTATTTC
172154 ATTTGGCTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 4 0.11
20 18 0.51
21 13 0.37
ACGTcount: A:0.10, C:0.07, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTTATTTTCTTTTTATTTC
Found at i:173107 original size:32 final size:32
Alignment explanation
Indices: 173047--173108 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
173037 AATAAACGGT
* *
173047 TAAAAAAAGGTGGTATCAGCTTTGTTATTGGC
1 TAAAAAAAGGTGGTACCAGCTTTATTATTGGC
* * *
173079 TAAAAAAATGTGGTACCGGTTTTATTATTG
1 TAAAAAAAGGTGGTACCAGCTTTATTATTG
173109 TTGTGCATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (32 bp):
TAAAAAAAGGTGGTACCAGCTTTATTATTGGC
Found at i:173347 original size:21 final size:21
Alignment explanation
Indices: 173323--173363 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
173313 AAATGGTAAA
*
173323 AAATATTAATGTGTTAGGTAG
1 AAATAATAATGTGTTAGGTAG
*
173344 AAATAATAATGTTTTAGGTA
1 AAATAATAATGTGTTAGGTA
173364 ATTTTTACCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (21 bp):
AAATAATAATGTGTTAGGTAG
Found at i:174546 original size:25 final size:25
Alignment explanation
Indices: 174504--174582 Score: 65
Period size: 25 Copynumber: 3.0 Consensus size: 25
174494 TTAATATTAT
*
174504 TTATATCAAT-ATTATTATTAAAATA
1 TTATATCTATAATT-TTATTAAAATA
174529 TTATATCTATAATTTTATAAATAAAA-A
1 TTATATCTATAATTTTAT---TAAAATA
174556 TTATGAT-TATTATATTTTATTAAAATA
1 TTAT-ATCTA-TA-ATTTTATTAAAATA
174583 AAATTATTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
25 13 0.29
26 8 0.18
27 8 0.18
28 9 0.20
29 7 0.16
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (25 bp):
TTATATCTATAATTTTATTAAAATA
Found at i:174588 original size:30 final size:32
Alignment explanation
Indices: 174540--174607 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 32
174530 TATATCTATA
*
174540 ATTTTA-T-AAATAAAAATTATGAT-TATTAT
1 ATTTTATTAAAATAAAAATTATGATAAATTAT
*
174569 ATTTTATTAAAAT-AAAATTATTATAAATTAT
1 ATTTTATTAAAATAAAAATTATGATAAATTAT
174600 A-TTTATTA
1 ATTTTATTA
174608 TTTATTATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 6 0.18
30 18 0.53
31 10 0.29
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (32 bp):
ATTTTATTAAAATAAAAATTATGATAAATTAT
Found at i:175337 original size:25 final size:25
Alignment explanation
Indices: 175295--175372 Score: 63
Period size: 25 Copynumber: 3.0 Consensus size: 25
175285 TTAATATTAT
*
175295 TTATATCAAT-ATTATTATTAAAATA
1 TTATATCTATAATT-TTATTAAAATA
175320 TTATATCTATAATTTTATAAATAAAA-A
1 TTATATCTATAATTTTAT---TAAAATA
*
175347 TTATGAT-TATATATTTTGTTAAAATA
1 TTAT-ATCTATA-ATTTTATTAAAATA
175373 AAATTATTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
25 18 0.41
26 4 0.09
27 9 0.20
28 13 0.30
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (25 bp):
TTATATCTATAATTTTATTAAAATA
Found at i:176183 original size:26 final size:27
Alignment explanation
Indices: 176154--176217 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
176144 TTAAAATAAA
* *
176154 ATTATTATAAATTATAT-TTATTATTT
1 ATTATTATAAATAATATATTATTAATT
*
176180 ATTATAATAAAAATAATATATTATTAATT
1 ATTAT--TATAAATAATATATTATTAATT
176209 A-TATTATAA
1 ATTATTATAA
176218 TGAGAGAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
26 9 0.29
28 13 0.42
29 9 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (27 bp):
ATTATTATAAATAATATATTATTAATT
Found at i:176935 original size:30 final size:30
Alignment explanation
Indices: 176899--176958 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
176889 ATAATTTTAT
* *
176899 AAATAAAAATTATGAT-TATTATTTTTATTA
1 AAAT-AAAATTATGATAAATTATATTTATTA
*
176929 AAATAAAATTATTATAAATTATATTTATTA
1 AAATAAAATTATGATAAATTATATTTATTA
176959 TTTATTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (30 bp):
AAATAAAATTATGATAAATTATATTTATTA
Found at i:176965 original size:26 final size:27
Alignment explanation
Indices: 176936--176999 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
176926 TTAAAATAAA
* *
176936 ATTATTATAAATTATAT-TTATTATTT
1 ATTATTATAAATAATATATTATTAATT
*
176962 ATTATAATAAAAATAATATATTATTAATT
1 ATTAT--TATAAATAATATATTATTAATT
176991 A-TATTATAA
1 ATTATTATAA
177000 TGAGAGAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
26 9 0.29
28 13 0.42
29 9 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (27 bp):
ATTATTATAAATAATATATTATTAATT
Found at i:177665 original size:14 final size:15
Alignment explanation
Indices: 177631--177675 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
177621 TAATTTATTT
* *
177631 AATATTATTTATATC
1 AATATTATTTTTATA
177646 AATATTATTTTTA-A
1 AATATTATTTTTATA
*
177660 AATATTATATTTATA
1 AATATTATTTTTATA
177675 A
1 A
177676 TTTTATAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
AATATTATTTTTATA
Found at i:177971 original size:787 final size:784
Alignment explanation
Indices: 173285--180246 Score: 12168
Period size: 787 Copynumber: 8.9 Consensus size: 784
173275 AGCGCTACAT
* * * * *
173285 GTTTTGTTATTGTTGGGCATTTTACCGGAAATGGTAAAAAATATTAATGTGTTAGGTAGAAATAA
1 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
*
173350 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCTCAACAATAACAAAACCGGTAAAAATAGA
66 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAGA
*
173415 CTTTTTATTGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
131 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
* * *
173480 TTGTCACAATATAACTAATG--AAAAAAGGACACGGTATTTATATTTCGATATTAGTTTTCTAAT
196 TTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAAT
* *
173543 -AA-AAAAAATTATATATAATTACAATATAATTTTAAAAAATAATCATAATGAAGTGATGAAAAA
261 AAATAAAAAATTATATATAATTACAATATAATTTTAAAAAAAAATCATAATGAAGTGATGAAAAC
* * * * * * *
173606 TAATCATAATTACAATATAACTATAAACATAAAAAATAATAAACTAATATTAATTATTAACAAAA
326 TACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAAA
* *
173671 TAATAATATTATTTTTAAAATATTAGAATAATGTATTTAATATTATTTATGTCAATATTATTATT
391 TAATAATATTA-TTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTATT
* * *
173736 AAAATACTATATCTATAATTTTATAAATAAAAATTTATTATTATTATATTTTATTAAAATAAAAT
455 AAAATATTATATCTATAATTTTATAAATAAAAA-TTATGATTATTATATTTTGTTAAAATAAAAT
* * *
173801 CATTATAAATTAGATTTATTATTTATTATAATAAGAATAATATATCATTAATTATATTATAATGA
519 TATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAATGA
* * *
173866 GAGAATAGTTAAACATATGCGTCGATACATTTTCCAAGAGTATCGACACATATGTTACATCGAAA
584 GAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGAAA
* * *
173931 CCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATACAACAATAAGAAAACCGGT
649 CCGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCGGT
* * * * * *
173996 AAAAATTACTGAAAACATCATTATTTTAACAAAACCGGTAAAGCACTACCGGTTTTATTATTTTT
714 AAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTATTTTT
174061 TTACCG
779 TTACCG
*
174067 GTTTTGTTATTGTTGGGCATTTTACCGGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
1 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
*
174132 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGTCCAACAATAACAAAACCGGTAAAAATAGA
66 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAGA
* *
174197 CTTTTTAATGATAAAATTAATAAACACAAATTGTACAAATTAATTTTAATTTTTTAGTTTGTAAG
131 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
* *
174262 TTGCCACAATATAACTAATG--AAAAAAGGACACGATATTTCTATTTCGATATTAGCTTCCTAAT
196 TTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAAT
* ****
174325 AAATAAAAAAAATTATATATAATAACAATATAATTTTTTTTTTAAAAATCATAATGAAGTGATGA
261 AAAT--AAAAAATTATATATAATTACAATATAA--TTTTAAAAAAAAATCATAATGAAGTGATGA
* *
174390 AACCTACTCAAAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAAC
322 AAACTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAAC
174455 AAAATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATT
387 AAAATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATT
*
174520 ATTAAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTATTAAAATAAA
452 ATTAAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAATAAA
174585 ATTATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAAT
517 ATTATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAAT
174650 GAGAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGA
582 GAGAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGA
* *
174715 AACCGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAATACAACCG
647 AACCGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCG
* *
174780 GTAAAAATTATCGAAAATATCATTATTTTAACAAAACCGGTAAAACACTACTGATTTTATTATTT
712 GTAAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTATTT
174845 TTTTACCG
777 TTTTACCG
174853 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
1 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
* * ** *
174918 TAAAGTTTTAGGTAATATTTACCGGTTTTGTTATGCCCAACAATAACAAAACTTGTAAAAATGGA
66 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAGA
174983 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
131 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
* * *
175048 TTGCCACAATATAACTATAACTAATGAAAAAAAGGATACCGTATTTCTATTTCGATATTAGCTTT
196 TTGCCACAATATAAC--TAA-TGA--AAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTT
* *
175113 CTGATAAATAAAAAAATTATATATAATTACAATATAATTTTTAAAAAAAAATCATAATGAAATGA
256 CTAATAAAT-AAAAAATTATATATAATTACAATATAA-TTTTAAAAAAAAATCATAATGAAGTGA
175178 TGAAAACTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATT
319 TGAAAACTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATT
175243 AACAAAATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATT
384 AACAAAATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATT
175308 ATTATTAAAATATTATATCTATAATTTTATAAATAAAAATTATGATTA-TATATTTTGTTAAAAT
449 ATTATTAAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAAT
175372 AAAATTATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTAT
514 AAAATTATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTAT
175437 AATGAGAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACAT
579 AATGAGAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACAT
175502 CGAAACCGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAA
644 CGAAACCGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAA
*
175567 CCGGTAAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTATTGATTTTATTA
709 CCGGTAAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTA
175632 TTTTTTTACCG
774 TTTTTTTACCG
175643 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACCATTGATGTTTTAGGTAGAAATA
1 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAA-CATTGATGTTTTAGGTAGAAATA
*
175708 ATAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAATCCGGTAAAAATAG
65 ATAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAG
175773 ACTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAA
130 ACTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAA
* * *
175838 GTTGCTACAATATAACTAATGAAAAAAAAGGAGACGTTATTTCTATTTCGATATTAGCTTTCTAA
195 GTTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAA
*
175903 TAAATAAAAAAATTATATATAATTACAATATAA-TTT-AAAAAAAA--ATAATGAAGTGCTGAAA
260 TAAAT-AAAAAATTATATATAATTACAATATAATTTTAAAAAAAAATCATAATGAAGTGATGAAA
175964 ACTACTCATAATTGCAATATAACTATAAACATCAAATACAAT-AAAT-ATATTA-TTATTAACAA
324 ACTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAA
176026 AATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTAT
389 AATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTAT
* * * *
176091 TAAAATGTTATATCTAAAATTTTATAAATAAAAATTATGATTACTATATTTTATTAAAATAAAAT
454 TAAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAATAAAAT
*
176156 TATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATTATTAATTATATTATAATGA
519 TATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAATGA
176221 GAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGAAA
584 GAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGAAA
*
176286 CCGATAATTATAATGTAATGGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCGGT
649 CCGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCGGT
*
176351 AAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTATTGATTTTATTATTTTT
714 AAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTATTTTT
176416 TTACCG
779 TTACCG
176422 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAATCATTGATGTTTTAGGTAGAAATA
1 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAA-CATTGATGTTTTAGGTAGAAATA
*
176487 ATAATGTTTTAGATAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAG
65 ATAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAG
* *
176552 ACTTTTTAATAATAAAATTAGTAAACACAAATTATACAAATTAATTTTAAATTTTTAGTTTGTAA
130 ACTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAA
* * * * **
176617 GTTGCTACAATAAAACTAATGTAAAAAAAAGGAGACGTTATTTCTATTTAAATATTAGCTTTCTA
195 GTTGCCACAATATAACTAATG-AAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTA
* *
176682 ATAAATAAAAAAAATTATATATAATTACAATATAATTTTTAAAAAAAATCATAATGAAGTTATGA
259 ATAAAT--AAAAAATTATATATAATTACAATATAATTTTAAAAAAAAATCATAATGAAGTGATGA
176747 AAACTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAAC
322 AAACTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAAC
176812 --AA-AATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTA-TT-TATCAATATTATT
387 AAAATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATT
* *
176872 ATTAAAATTTTATATCTATAATTTTATAAATAAAAATTATGATTATTAT-TTTTATTAAAATAAA
452 ATTAAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAATAAA
*
176936 ATTATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATTATTAATTATATTATAAT
517 ATTATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAAT
177001 GAGAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGA
582 GAGAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGA
177066 AACCGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCG
647 AACCGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCG
*
177131 GTAAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTAATT
712 GTAAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTATTT
177196 TTTTACCG
777 TTTTACCG
*
177204 ATTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
1 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
* *
177269 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATGACAAAACCGGTAAAAATAAA
66 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAGA
177334 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
131 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
177399 TTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAAT
196 TTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAAT
*
177464 AAAT-AAAAATTATATATAATTACAATATAATTTAAAAAAAAAATTCATAATGAAGTGATGAAAA
261 AAATAAAAAATTATATATAATTACAATATAATTTTAAAAAAAAA-TCATAATGAAGTGATGAAAA
177528 CTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAA
325 CTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAA
*
177593 ATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTTTT
390 ATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTATT
* *
177658 AAAATATTATATTTATAATTTTATAAATACAAATTATGATTATTATATTTTGTTAAAATAAAATT
455 AAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAATAAAATT
177723 ATTATAAATTATATTTATTATTTATTATAATAAAAATAATAATATATCATTAATTATATTATAAT
520 ATTATAAATTATATTTATTATTTATTATAAT--AAA-AATAATATATCATTAATTATATTATAAT
177788 GAGAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGA
582 GAGAGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGA
*
177853 AACCGATAATTATAATATAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCG
647 AACCGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCG
*
177918 GTAAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTAATT
712 GTAAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTATTT
177983 TTTTACCG
777 TTTTACCG
*
177991 GTTTTGTTATTGTTGGGCATTTTACCGGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
1 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
*
178056 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAATCCGGTAAAAATAGA
66 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAGA
178121 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
131 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
178186 TTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAAT
196 TTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAAT
*
178251 AAAT-AAAAATTATATATAATTACAATATAATTTAAAAAAAAAATTCATAATGAAGTGATGAAAA
261 AAATAAAAAATTATATATAATTACAATATAATTTTAAAAAAAAA-TCATAATGAAGTGATGAAAA
178315 CTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAA
325 CTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAA
178380 ATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTATT
390 ATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTATT
*
178445 AAAATATTATATCTATAATTTTATAAATAAAAATTGTGATTATTATATTTTGTTAAAATAAAATT
455 AAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAATAAAATT
178510 ATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAATGAG
520 ATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAATGAG
*
178575 AGAATAGTTAAACATATGTGTCGATATATTTTCTAAAAGTATCGACACATATGTTACATCGAAAC
585 AGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGAAAC
178640 CGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCGGTA
650 CGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCGGT-
* * * *
178705 AAAAATTACCGAAAATATCATTATTTTAACAAAATCAGTAAAACGTTACTGATTTTATTATGTTT
714 AAAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTATTTTT
178770 TTACCG
779 TTACCG
* *
178776 GTTTTGTTATTGTTGGGCATTTTACTAGAAATGTTAAAAAACATTGATGTTTTAGGTATAAATAA
1 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
* * * *
178841 TAATGTGTTAGGTAATTTTTATCGGTTTTTTTATGCCCAACAATAATAAAACCGGTAAAAATAGA
66 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAGA
*
178906 CTTTTTAATGATAAAATTAGT-AACAAAAATTATAC-AATTAATTTTAATTTTTTAGTTTGTAAG
131 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
*
178969 TTGCCACAATATAACTAATG--AAAAAAGGACACGGTGTTTCTATTTCGATATTAGCTTTCTAAT
196 TTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAAT
* *
179032 AAATAAAAATATTATATATAATAACAATATAA-TTTAAAAAAAAATCATAATGAAGTGATGAAAC
261 AAATAAAAA-ATTATATATAATTACAATATAATTTTAAAAAAAAATCATAATGAAGTGATGAAAA
179096 CTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAA
325 CTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAA
*
179161 ATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTTTT
390 ATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTATT
179226 AAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAAT-AAATT
455 AAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAATAAAATT
179290 ATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAATGAG
520 ATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAATGAG
*
179355 AGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATATTACATCGAAAC
585 AGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGAAAC
*
179420 CGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAA-CTGTA
650 CGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCGGTA
179484 AAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTATTTTTT
715 AAAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTATTTTTT
*
179549 TGCCG
780 TACCG
179554 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
1 GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
* *
179619 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCTCAACAATAACAAAACCGGTAAAAATAGT
66 TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAGA
*
179684 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTTAG
131 CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
* * *
179749 TTGCCACAATATAACTAATG--AAAAAAGGAGACGGTATTTCTATTTTGATATTTGCTTTCTAAT
196 TTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAAT
* *
179812 AAATAAAAAAATTTTATATAATTACAATATAATTTTTAAAAAAAATCATAATGAAGTGATGAAAA
261 AAAT-AAAAAATTATATATAATTACAATATAATTTTAAAAAAAAATCATAATGAAGTGATGAAAA
179877 CTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAA
325 CTACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAA
*
179942 ATAATATTATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTATT
390 ATAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTATT
180007 AAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAATAAAATT
455 AAAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAATAAAATT
*
180072 ATTATAAATTATATTTTTTATTTATTATAATAAAAATAATATATCATTAATTATATTATAATGAG
520 ATTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAATGAG
* *
180137 AGAATAGTTAAACATATGTGTCAATACATTTTCTAAAAGTATCGACACATATGTTACATCGAAAT
585 AGAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGAAAC
* * * * *
180202 CGATAATTAAAATGTAATAGGTAAATTAACAATGTAATCGGTATA
650 CGATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATA
180247 AATATACTGG
Statistics
Matches: 5934, Mismatches: 204, Indels: 84
0.95 0.03 0.01
Matches are distributed among these distances:
777 37 0.01
778 406 0.07
779 516 0.09
780 400 0.07
781 769 0.13
782 755 0.13
783 204 0.03
784 224 0.04
785 312 0.05
786 588 0.10
787 859 0.14
788 108 0.02
789 4 0.00
790 322 0.05
791 361 0.06
792 27 0.00
793 42 0.01
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.39
Consensus pattern (784 bp):
GTTTTGTTATTGTTGGGCATTTTACCAGAAATGTTAAAAAACATTGATGTTTTAGGTAGAAATAA
TAATGTTTTAGGTAATTTTTACCGGTTTTGTTATGCCCAACAATAACAAAACCGGTAAAAATAGA
CTTTTTAATGATAAAATTAGTAAACACAAATTATACAAATTAATTTTAATTTTTTAGTTTGTAAG
TTGCCACAATATAACTAATGAAAAAAAAGGACACGGTATTTCTATTTCGATATTAGCTTTCTAAT
AAATAAAAAATTATATATAATTACAATATAATTTTAAAAAAAAATCATAATGAAGTGATGAAAAC
TACTCATAATTGCAATATAACTATAAACATCAAATACAATAAAATAATATTATTTATTAACAAAA
TAATAATATTATTTTAAAATATTAGAATAATTTATTTAATATTATTTATATCAATATTATTATTA
AAATATTATATCTATAATTTTATAAATAAAAATTATGATTATTATATTTTGTTAAAATAAAATTA
TTATAAATTATATTTATTATTTATTATAATAAAAATAATATATCATTAATTATATTATAATGAGA
GAATAGTTAAACATATGTGTCGATACATTTTCTAAAAGTATCGACACATATGTTACATCGAAACC
GATAATTATAATGTAATAGATATATTTACAATGTAACCGGTATACAACAATAACAAAACCGGTAA
AAATTACCGAAAATATCATTATTTTAACAAAACCGGTAAAACGCTACTGATTTTATTATTTTTTT
ACCG
Found at i:180237 original size:20 final size:19
Alignment explanation
Indices: 180206--180244 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
180196 CGAAATCGAT
180206 AATTAAAATGTAATAGGTA
1 AATTAAAATGTAATAGGTA
*
180225 AATTAACAATGTAATCGGTA
1 AATTAA-AATGTAATAGGTA
180245 TAAATATACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (19 bp):
AATTAAAATGTAATAGGTA
Found at i:180580 original size:87 final size:87
Alignment explanation
Indices: 180476--180812 Score: 523
Period size: 87 Copynumber: 3.9 Consensus size: 87
180466 AAATATGTCA
* * *
180476 ATATAAACGCTACCTATTACATTATATAAGTGTTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
*
180541 TTGGTTAAATA-CTTATTTTATT
66 CTGGTTAAATATC-TATTTTATT
* *
180563 ATATAAGCGCTACCTATTACATTATATAAGTGATACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
180628 CTGGTTAAATATCTATTTTATT
66 CTGGTTAAATATCTATTTTATT
* *
180650 ATATAAGCGTTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATGTTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
* *
180715 CCGGTCAAATATCTATTTTATT
66 CTGGTTAAATATCTATTTTATT
* * *
180737 ATATAAGCGCTACCTAATACATTATATAAGCGCTACCTAATATGTTATTATACTTAATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATA-TT
*
180802 TCTGATTAAAT
65 TCTGGTTAAAT
180813 GATATAACAT
Statistics
Matches: 231, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
87 220 0.95
88 11 0.05
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.44
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
CTGGTTAAATATCTATTTTATT
Found at i:180610 original size:23 final size:23
Alignment explanation
Indices: 180560--180604 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
180550 TACTTATTTT
* *
180560 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGATACCTAATAC
*
180583 ATTATATAAGTGATACCTAATA
1 ATTATATAAGCGATACCTAATA
180605 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGATACCTAATAC
Found at i:180697 original size:23 final size:23
Alignment explanation
Indices: 180647--180691 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
180637 TATCTATTTT
* *
180647 ATTATATAAGCGTTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
180670 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
180692 TGTTATTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Done.