Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008942.1 Hibiscus syriacus cultivar Beakdansim tig00112261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2383254
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 11
Found at i:2028636 original size:19 final size:19
Alignment explanation
Indices: 2028612--2028660 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
2028602 TTATATTCAC
2028612 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
2028631 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
2028650 ATACAAAATTA
1 ATACAAAATTA
2028661 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:2030473 original size:33 final size:33
Alignment explanation
Indices: 2030436--2030501 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
2030426 CATCTTAATA
*
2030436 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
2030469 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
2030502 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:2030559 original size:21 final size:21
Alignment explanation
Indices: 2030534--2030596 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
2030524 CCCCTTATGC
* *
2030534 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
2030555 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
2030576 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
2030597 TGATTATCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.17, C:0.30, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:2031066 original size:15 final size:15
Alignment explanation
Indices: 2031046--2031075 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2031036 CCTCTAAGAT
*
2031046 TGCTATGCCCTTTGA
1 TGCTATACCCTTTGA
2031061 TGCTATACCCTTTGA
1 TGCTATACCCTTTGA
2031076 GTATTCTGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.40
Consensus pattern (15 bp):
TGCTATACCCTTTGA
Found at i:2038464 original size:20 final size:19
Alignment explanation
Indices: 2038409--2038455 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
2038399 TCCGGTACCA
2038409 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
2038428 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
2038449 TTTTACC
1 TTTTACC
2038456 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:2038680 original size:181 final size:182
Alignment explanation
Indices: 2038376--2038848 Score: 671
Period size: 181 Copynumber: 2.6 Consensus size: 182
2038366 CGTACTTACG
* * *
2038376 AAAGTATCGACACTTTCAATATATCCGGTACCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATATCGGTTT
* * * *
2038441 TATCATATTTTTACCTGTTATATCGTTGTGTATCGATATATTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
*
2038506 AGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
** *
2038557 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTATTGGTTTTATCATTTTGTTATCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATATCGGTTT
* *
2038622 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
** * *
2038687 AGGATTTAAAATTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * ** * **
2038739 AAAGTA-CTGACACTTTAAATGTATCCGGTAGTGCTTTACCGGTTTTATCATTTCAATATCGGTT
1 AAAGTATC-GACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATATCGGTT
* * * *
2038803 TTGTCATAGTTTTACCTGTTATATCATTTTGGATCGACACATTTTT
65 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
2038849 AATTTGGATC
Statistics
Matches: 258, Mismatches: 32, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
181 164 0.64
182 94 0.36
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.44
Consensus pattern (182 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATATCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:2039805 original size:24 final size:22
Alignment explanation
Indices: 2039751--2039828 Score: 72
Period size: 23 Copynumber: 3.4 Consensus size: 22
2039741 ACTCTTCTTC
*
2039751 TTATTTTTAGTTTTA-TAAAGTT
1 TTATTTTTA-TTTTATTTAAGTT
2039773 ATT-TCTTTTA-TTTATTTTCAAGTT
1 -TTAT-TTTTATTTTA-TTT-AAGTT
2039797 TTCATTTTTATTTTATTTAAGTT
1 TT-ATTTTTATTTTATTTAAGTT
2039820 TTATTTTTA
1 TTATTTTTA
2039829 AACATGCTAA
Statistics
Matches: 47, Mismatches: 1, Indels: 15
0.75 0.02 0.24
Matches are distributed among these distances:
21 4 0.09
22 8 0.17
23 17 0.36
24 13 0.28
25 5 0.11
ACGTcount: A:0.23, C:0.04, G:0.05, T:0.68
Consensus pattern (22 bp):
TTATTTTTATTTTATTTAAGTT
Found at i:2039827 original size:23 final size:24
Alignment explanation
Indices: 2039778--2039828 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
2039768 AAGTTATTTC
2039778 TTTTATTTATTTTCAAGTTTTCAT
1 TTTTATTTATTTTCAAGTTTTCAT
2039802 TTTTATTT-TATTT-AAGTTTT-AT
1 TTTTATTTAT-TTTCAAGTTTTCAT
2039824 TTTTA
1 TTTTA
2039829 AACATGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.27
23 8 0.31
24 11 0.42
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.71
Consensus pattern (24 bp):
TTTTATTTATTTTCAAGTTTTCAT
Found at i:2040426 original size:20 final size:17
Alignment explanation
Indices: 2040399--2040439 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
2040389 TATTTTCTTT
2040399 ATTTTTA-T-TTTATATC
1 ATTTTTATTATTTA-ATC
2040415 ACTTTTTATTATTTAATC
1 A-TTTTTATTATTTAATC
2040433 ATTTTTA
1 ATTTTTA
2040440 CCAATAACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 1 0.05
17 12 0.55
18 5 0.23
19 4 0.18
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTTATTATTTAATC
Found at i:2040878 original size:13 final size:13
Alignment explanation
Indices: 2040860--2040884 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2040850 AACTCATATA
2040860 ACCTAAGAGAGAT
1 ACCTAAGAGAGAT
2040873 ACCTAAGAGAGA
1 ACCTAAGAGAGA
2040885 GATGTAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.24, T:0.12
Consensus pattern (13 bp):
ACCTAAGAGAGAT
Found at i:2041769 original size:2 final size:2
Alignment explanation
Indices: 2041762--2041801 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
2041752 TATATTAAAC
2041762 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
2041802 AAACCCTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:2041926 original size:3 final size:3
Alignment explanation
Indices: 2041920--2041953 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
2041910 ATAGTAATAA
*
2041920 TAT TAT TAT TAT TAT TTT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
2041954 GTCTTGGGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:2045014 original size:15 final size:15
Alignment explanation
Indices: 2044996--2045052 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
2044986 GTAACCGGTT
2044996 TCGGTTTTAAAAAAA
1 TCGGTTTTAAAAAAA
*
2045011 TCGGTTTTTTTAAAAAA
1 TCGG--TTTTAAAAAAA
* *
2045028 CCGGTTATAAAAAAA
1 TCGGTTTTAAAAAAA
*
2045043 TCGATTTTAA
1 TCGGTTTTAA
2045053 TATTCCAGAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
15 20 0.61
17 13 0.39
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (15 bp):
TCGGTTTTAAAAAAA
Found at i:2045025 original size:17 final size:17
Alignment explanation
Indices: 2045000--2045033 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2044990 CCGGTTTCGG
*
2045000 TTTTAAAAAAATCGGTT
1 TTTTAAAAAAACCGGTT
*
2045017 TTTTTAAAAAACCGGTT
1 TTTTAAAAAAACCGGTT
2045034 ATAAAAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (17 bp):
TTTTAAAAAAACCGGTT
Found at i:2045468 original size:13 final size:13
Alignment explanation
Indices: 2045447--2045501 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
2045437 AAGTTCGATA
*
2045447 AATTCAAATACTT
1 AATTGAAATACTT
2045460 AATTGAAATACTT
1 AATTGAAATACTT
* *
2045473 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
2045487 AATTGAAATACTT
1 AATTGAAATACTT
2045500 AA
1 AA
2045502 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:2045583 original size:32 final size:33
Alignment explanation
Indices: 2045487--2045585 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
2045477 AACTCAACAT
* * *
2045487 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
2045520 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
2045553 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
2045585 A
1 A
2045586 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 12 0.19
33 51 0.81
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:2045604 original size:21 final size:21
Alignment explanation
Indices: 2045580--2045619 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
2045570 ACTTCAAGTT
2045580 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
2045601 CGATAATTGAAATAAAGTT
1 CGATAATTGAAACAAAGTT
2045620 ATAAAATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:2050364 original size:33 final size:33
Alignment explanation
Indices: 2050312--2050402 Score: 130
Period size: 33 Copynumber: 2.8 Consensus size: 33
2050302 ACAAAGTTTA
* * * * *
2050312 CGAT-AATTGAAATATTTAAATATTTTCAAGTT
1 CGATAAATTCAAATACTTAAAAACTTCCAAGTT
2050344 CGATAAATTCAAATACTTAAAAACTTCCAAGTT
1 CGATAAATTCAAATACTTAAAAACTTCCAAGTT
2050377 CGATAAATTCAAATACTTAAAAACTT
1 CGATAAATTCAAATACTTAAAAACTT
2050403 ACAATTTCCA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
32 4 0.08
33 49 0.92
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (33 bp):
CGATAAATTCAAATACTTAAAAACTTCCAAGTT
Found at i:2054112 original size:38 final size:37
Alignment explanation
Indices: 2054065--2054313 Score: 198
Period size: 38 Copynumber: 6.6 Consensus size: 37
2054055 GAAACAAAAG
* * *
2054065 TTTTATCTCATTTGAGATAATTTTTCCTCAAAAACAAT
1 TTTTATCTCACTCGAGATAGTTTTT-CTCAAAAACAAT
* * * *
2054103 TTTTGTCTCACTCGAGATAGTTTCTCTC-GAAACATAA
1 TTTTATCTCACTCGAGATAGTTTTTCTCAAAAACA-AT
* *
2054140 TTTTATCTCACTGGAGATAGTCTTTTTTCAAAAACAAT
1 TTTTATCTCACTCGAGATAGT-TTTTCTCAAAAACAAT
* * * * *
2054178 TTTTGTCTCACTCGAGATAGTTTCTTTTGAAATAGAA-
1 TTTTATCTCACTCGAGATAGTTT-TTCTCAAAAACAAT
* **
2054215 TTTTATCTTACTAAAGATAGTTTTTCCTCAAAAACAAT
1 TTTTATCTCACTCGAGATAGTTTTT-CTCAAAAACAAT
* * * * * *
2054253 TTTTATCTCACTTGAAATAGTTTCTCTTAAAACAAAAA
1 TTTTATCTCACTCGAGATAGTTTTTCTCAAAA-ACAAT
* *
2054291 TTTCATCTCACTAGAGATA-TTTT
1 TTTTATCTCACTCGAGATAGTTTT
2054314 CCCTTGAAAA
Statistics
Matches: 166, Mismatches: 38, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
36 7 0.04
37 60 0.36
38 94 0.57
39 5 0.03
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.42
Consensus pattern (37 bp):
TTTTATCTCACTCGAGATAGTTTTTCTCAAAAACAAT
Found at i:2054157 original size:75 final size:75
Alignment explanation
Indices: 2054047--2054313 Score: 322
Period size: 75 Copynumber: 3.5 Consensus size: 75
2054037 TATGAGAGGT
* * *
2054047 TTTCCCTTGAAACAAAAGTTTTATCTCATTTGAGATAATTTTTCCTCAAAAACAATTTTTGTCTC
1 TTTCTCTTGAAACAAAA-TTTTATCTCACTAGAGATAATTTTTCCTCAAAAACAATTTTTGTCTC
2054112 ACTCGAGATAG
65 ACTCGAGATAG
* * * * *
2054123 TTTCTCTCGAAACATAATTTTATCTCACTGGAGATAGTCTTTT-TTCAAAAACAATTTTTGTCTC
1 TTTCTCTTGAAACAAAATTTTATCTCACTAGAGATAAT-TTTTCCTCAAAAACAATTTTTGTCTC
2054187 ACTCGAGATAG
65 ACTCGAGATAG
* * * * * * *
2054198 TTTCTTTTGAAATAGAATTTTATCTTACTAAAGATAGTTTTTCCTCAAAAACAATTTTTATCTCA
1 TTTCTCTTGAAACAAAATTTTATCTCACTAGAGATAATTTTTCCTCAAAAACAATTTTTGTCTCA
* *
2054263 CTTGAAATAG
66 CTCGAGATAG
* *
2054273 TTTCTCTTAAAACAAAAATTTCATCTCACTAGAGAT-ATTTT
1 TTTCTCTTGAAAC-AAAATTTTATCTCACTAGAGATAATTTT
2054314 CCCTTGAAAA
Statistics
Matches: 162, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
74 4 0.02
75 122 0.75
76 36 0.22
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (75 bp):
TTTCTCTTGAAACAAAATTTTATCTCACTAGAGATAATTTTTCCTCAAAAACAATTTTTGTCTCA
CTCGAGATAG
Found at i:2055960 original size:72 final size:71
Alignment explanation
Indices: 2055860--2056094 Score: 371
Period size: 72 Copynumber: 3.3 Consensus size: 71
2055850 ACTTAAATTT
* *
2055860 TTTTTGTCTCACCCGAGACAGTTACTCTTGAAACAAAAATTTCATCTCCCTTGAGATATTTTCCT
1 TTTTTGTCTCACTCGAGACAGTTACTCTTGAAACGAAAATTTCATCTCCCTTGAGATATTTTCCT
2055925 TGAAAAC
66 TG-AAAC
* * * *
2055932 TTTTTGTCTCACTCGAGACAATTCCTCTTGAAACGAAAATTTAATCTCCTTTGAGATATTTTCCC
1 TTTTTGTCTCACTCGAGACAGTTACTCTTGAAACGAAAATTTCATCTCCCTTGAGATATTTT-CC
**
2055997 TTGAATT
65 TTGAAAC
*
2056004 TTTTTGTCTCACTCGAGACAGTTTCTCTTGAAACGAAAATTTCATCTCCCTTGAGATATTTTCCT
1 TTTTTGTCTCACTCGAGACAGTTACTCTTGAAACGAAAATTTCATCTCCCTTGAGATATTTTCCT
2056069 TGAAAC
66 TGAAAC
2056075 TTTTTGTCTCACTCGAGACA
1 TTTTTGTCTCACTCGAGACA
2056095 TTTTCTCTCA
Statistics
Matches: 148, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
71 27 0.18
72 116 0.78
73 5 0.03
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (71 bp):
TTTTTGTCTCACTCGAGACAGTTACTCTTGAAACGAAAATTTCATCTCCCTTGAGATATTTTCCT
TGAAAC
Found at i:2056118 original size:55 final size:55
Alignment explanation
Indices: 2056052--2056157 Score: 160
Period size: 55 Copynumber: 1.9 Consensus size: 55
2056042 ATTTCATCTC
** * *
2056052 CCTTGAGATATTTTCC-TTGAAACTTTTTGTCTCACTCGAGACATTTTCTCTCAAA
1 CCTTGAGATA-TTTCCTTTGAAAAGTTTTGTCTCACCCGAGACAATTTCTCTCAAA
2056107 CCTTGAGATATTTCCTTTGAAAAGTTTTGTCTCACCCGAGACAATTTCTCT
1 CCTTGAGATATTTCCTTTGAAAAGTTTTGTCTCACCCGAGACAATTTCTCT
2056158 TAAAATAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 5 0.11
55 41 0.89
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (55 bp):
CCTTGAGATATTTCCTTTGAAAAGTTTTGTCTCACCCGAGACAATTTCTCTCAAA
Found at i:2057285 original size:2 final size:2
Alignment explanation
Indices: 2057280--2057352 Score: 87
Period size: 2 Copynumber: 37.0 Consensus size: 2
2057270 ATGGTTTTTA
*
2057280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T GAA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
* * *
2057322 AT AT AT -T TT AA AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2057353 TAAAAATATA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
1 2 0.03
2 59 0.97
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2057404 original size:17 final size:18
Alignment explanation
Indices: 2057320--2057448 Score: 66
Period size: 19 Copynumber: 6.3 Consensus size: 18
2057310 ATATATTGAA
2057320 ATATAT-ATTTTAAATACAT
1 ATATATAATTTTAAA-A-AT
2057339 ATATATATATATATTAAAAAT
1 ATATATA-AT-T-TTAAAAAT
2057360 ATAAATATTATATTTTTTAAAAAT
1 AT--ATA-TA-A--TTTTAAAAAT
2057384 ATATATAATTTTGAAAAAT
1 ATATATAATTTT-AAAAAT
*
2057403 ATATA-ATTTTTAAATAAAT
1 ATATATAATTTT-AA-AAAT
2057422 AAATATTATATATTTT-AAAAT
1 --ATA-TATA-ATTTTAAAAAT
2057443 ATATAT
1 ATATAT
2057449 GGTTTTATTG
Statistics
Matches: 91, Mismatches: 3, Indels: 33
0.72 0.02 0.26
Matches are distributed among these distances:
18 14 0.15
19 24 0.26
20 1 0.01
21 15 0.16
22 8 0.09
23 9 0.10
24 18 0.20
25 1 0.01
26 1 0.01
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.47
Consensus pattern (18 bp):
ATATATAATTTTAAAAAT
Found at i:2057418 original size:15 final size:16
Alignment explanation
Indices: 2057374--2057412 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 16
2057364 ATATTATATT
2057374 TTTTAAAAATATATATAA
1 TTTT-AAAA-ATATATAA
2057392 TTTTGAAAAATATATAA
1 TTTT-AAAAATATATAA
2057409 TTTT
1 TTTT
2057413 TAAATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
TTTTAAAAATATATAA
Found at i:2061621 original size:17 final size:18
Alignment explanation
Indices: 2061599--2061638 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
2061589 TTTTCGCTGC
2061599 ATTTTTTTTCTT-TCATT
1 ATTTTTTTTCTTATCATT
*
2061616 ATTTTTTTTGTTATCATT
1 ATTTTTTTTCTTATCATT
2061634 -TTTTT
1 ATTTTT
2061639 GTTTGAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (18 bp):
ATTTTTTTTCTTATCATT
Found at i:2061632 original size:18 final size:17
Alignment explanation
Indices: 2061599--2061643 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
2061589 TTTTCGCTGC
*
2061599 ATTTTTTTTCTTTCATT
1 ATTTTTTTTGTTTCATT
2061616 ATTTTTTTTGTTATCATT
1 ATTTTTTTTGTT-TCATT
2061634 -TTTTTGTTTG
1 ATTTTT-TTTG
2061644 AACATTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 16 0.64
18 9 0.36
ACGTcount: A:0.11, C:0.07, G:0.07, T:0.76
Consensus pattern (17 bp):
ATTTTTTTTGTTTCATT
Found at i:2062307 original size:26 final size:26
Alignment explanation
Indices: 2062271--2062323 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2062261 TTATATCCAG
2062271 AGAAAACAAGTCTATCTCTTCACCAA
1 AGAAAACAAGTCTATCTCTTCACCAA
2062297 AGAAAACAAGTCTATCTCTTCACCAA
1 AGAAAACAAGTCTATCTCTTCACCAA
2062323 A
1 A
2062324 CATCGCTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.26, G:0.08, T:0.23
Consensus pattern (26 bp):
AGAAAACAAGTCTATCTCTTCACCAA
Found at i:2077304 original size:24 final size:24
Alignment explanation
Indices: 2077277--2077346 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
2077267 TCAAGGAGAC
* * *
2077277 TCATCCATTGTAAAAGCACAAGCT
1 TCATCCACTGCAAAAGCACAAGAT
**
2077301 TCATCTGCTGCAAAAGCACAAGAT
1 TCATCCACTGCAAAAGCACAAGAT
** *
2077325 TCATCGGCTACAAAAGCACAAG
1 TCATCCACTGCAAAAGCACAAG
2077347 CTTCTGTAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.20
Consensus pattern (24 bp):
TCATCCACTGCAAAAGCACAAGAT
Found at i:2077961 original size:30 final size:30
Alignment explanation
Indices: 2077926--2077985 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
2077916 TTCGCATATA
2077926 CTTTGAAGGCTCCTTTCTTCGGGCATCTGG
1 CTTTGAAGGCTCCTTTCTTCGGGCATCTGG
*
2077956 CTTTGAAGGCTCCTTTCTTTGGGCATCTGG
1 CTTTGAAGGCTCCTTTCTTCGGGCATCTGG
2077986 TTGCAATCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.10, C:0.25, G:0.27, T:0.38
Consensus pattern (30 bp):
CTTTGAAGGCTCCTTTCTTCGGGCATCTGG
Found at i:2081391 original size:17 final size:17
Alignment explanation
Indices: 2081346--2081391 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
2081336 CTTTATCATA
*
2081346 CTTACCCCTTTAATTTC
1 CTTATCCCTTTAATTTC
* * *
2081363 CTTTTTCATTTAATTTC
1 CTTATCCCTTTAATTTC
2081380 CTTATCCCTTTA
1 CTTATCCCTTTA
2081392 CTCATTCACA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.54
Consensus pattern (17 bp):
CTTATCCCTTTAATTTC
Found at i:2089173 original size:29 final size:28
Alignment explanation
Indices: 2089139--2089307 Score: 119
Period size: 29 Copynumber: 5.8 Consensus size: 28
2089129 AAAATATATT
2089139 TTTTTATTAAATTACAATAAAAGTCTAAA
1 TTTTTA-TAAATTACAATAAAAGTCTAAA
*** *
2089168 TATTTATATAAATTGTTATAAAAGTCTAAT
1 T-TTT-TATAAATTACAATAAAAGTCTAAA
* * *
2089198 TTTTTAAATAATTATAATAAATGTC-AAA
1 TTTTTATA-AATTACAATAAAAGTCTAAA
* *
2089226 TTTTTTTATAAATTACAATAAATA-CCATAAC
1 --TTTTTATAAATTACAATAAA-AGTC-TAAA
*
2089257 TTTTTATAAATTACAATAAATAG-CAAAA
1 TTTTTATAAATTACAATAAA-AGTCTAAA
* *
2089285 CTATTTATAAATTACAATCAAAG
1 -TTTTTATAAATTACAATAAAAG
2089308 AAAAAACTTA
Statistics
Matches: 112, Mismatches: 18, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
28 9 0.08
29 70 0.62
30 29 0.26
31 4 0.04
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.41
Consensus pattern (28 bp):
TTTTTATAAATTACAATAAAAGTCTAAA
Found at i:2089247 original size:58 final size:58
Alignment explanation
Indices: 2089147--2089307 Score: 141
Period size: 58 Copynumber: 2.8 Consensus size: 58
2089137 TTTTTTTATT
* * *** * *
2089147 AAATTACAATAAAAGTCTAAATATTTATATAAATTGTTATAAAAGTC-TAATTTTTTAA
1 AAATTACAATAAATGTC-AAATATTTTTATAAATTACAATAAAAGCCATAACTTTTTAA
* * *
2089205 ATAATTATAATAAATGTCAAATTTTTTTATAAATTACAATAAATA-CCATAACTTTTTAT
1 A-AATTACAATAAATGTCAAATATTTTTATAAATTACAATAAA-AGCCATAACTTTTTAA
* *
2089264 AAATTACAATAAATAG-CAAA-ACTATTTATAAATTACAATCAAAG
1 AAATTACAATAAAT-GTCAAATA-TTTTTATAAATTACAATAAAAG
2089308 AAAAAACTTA
Statistics
Matches: 83, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
57 1 0.01
58 56 0.67
59 26 0.31
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.39
Consensus pattern (58 bp):
AAATTACAATAAATGTCAAATATTTTTATAAATTACAATAAAAGCCATAACTTTTTAA
Found at i:2091086 original size:18 final size:19
Alignment explanation
Indices: 2091065--2091109 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
2091055 TTTTCAAACG
* *
2091065 TTTTTCATATTTCTTA-AA
1 TTTTTAATATTTATTATAA
2091083 TTTTTAATATTTATTATAA
1 TTTTTAATATTTATTATAA
2091102 -TTTTAATA
1 TTTTTAATA
2091110 ACATTTAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 22 0.92
19 2 0.08
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTAATATTTATTATAA
Found at i:2093465 original size:15 final size:15
Alignment explanation
Indices: 2093447--2093500 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
2093437 CAAAGAATCC
*
2093447 AAAATCAAGAATCAA
1 AAAATCAAGAATAAA
* *
2093462 AAAATCAAGATTGACA
1 AAAATCAAGAAT-AAA
* *
2093478 AGAATCAAGAAAAAA
1 AAAATCAAGAATAAA
2093493 AAAATCAA
1 AAAATCAA
2093501 AACCGACGGT
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
15 20 0.67
16 10 0.33
ACGTcount: A:0.67, C:0.11, G:0.09, T:0.13
Consensus pattern (15 bp):
AAAATCAAGAATAAA
Found at i:2094380 original size:28 final size:29
Alignment explanation
Indices: 2094318--2094381 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
2094308 ATTGTATAAC
2094318 ATATATGATAATATATATAATAATTTCAAA
1 ATATAT-ATAATATATATAATAATTTCAAA
* * *
2094348 A-ATATATAATATATATACT-TTTTGAAA
1 ATATATATAATATATATAATAATTTCAAA
2094375 ATATATA
1 ATATATA
2094382 GTATAGTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 7 0.23
28 18 0.60
29 4 0.13
30 1 0.03
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (29 bp):
ATATATATAATATATATAATAATTTCAAA
Found at i:2094491 original size:24 final size:26
Alignment explanation
Indices: 2094444--2094500 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
2094434 AAAAATATTT
2094444 TTTTTGAAAACATATATATAATATAG
1 TTTTTGAAAACATATATATAATATAG
*
2094470 TTTTTGAAAACGTATA-AT-ATATAG
1 TTTTTGAAAACATATATATAATATAG
2094494 TTTTTGA
1 TTTTTGA
2094501 TGGTTTTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 13 0.43
25 2 0.07
26 15 0.50
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.46
Consensus pattern (26 bp):
TTTTTGAAAACATATATATAATATAG
Found at i:2094553 original size:37 final size:38
Alignment explanation
Indices: 2094469--2094691 Score: 200
Period size: 37 Copynumber: 5.9 Consensus size: 38
2094459 ATATAATATA
* *
2094469 GTTTTTGAAAACGTATAATATATAG-TTTTT---GATG
1 GTTTTTGAAAACATATAATATATAGTTTTTTAAAAATG
*
2094503 GTTTTTGAAAAAAATATAATATATAGTTTTTTAAAAATG
1 GTTTTTG-AAAACATATAATATATAGTTTTTTAAAAATG
* *
2094542 GTTTTGGAAAAAAACATAT-ATAATATAGTTTTTGAAAACAT-
1 GTTTTTG---AAAACATATAAT-ATATAGTTTTTTAAAA-ATG
*
2094583 ATTTTTGAAAACA-AGTAATATATA-TATTTTT-AAAATG
1 GTTTTTGAAAACATA-TAATATATAGT-TTTTTAAAAATG
2094620 GTTTTTGAAAACATATAATATATAGTTTTTT--AAATG
1 GTTTTTGAAAACATATAATATATAGTTTTTTAAAAATG
* *
2094656 GTTTTTTGAAAACATAT-ATAACATAGTTTTTGAAAA
1 G-TTTTTGAAAACATATAAT-ATATAGTTTTTTAAAA
2094692 CATATAATAT
Statistics
Matches: 158, Mismatches: 12, Indels: 33
0.78 0.06 0.16
Matches are distributed among these distances:
34 7 0.04
35 16 0.10
36 15 0.09
37 56 0.35
38 18 0.11
39 13 0.08
40 2 0.01
41 29 0.18
42 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.43
Consensus pattern (38 bp):
GTTTTTGAAAACATATAATATATAGTTTTTTAAAAATG
Found at i:2094602 original size:114 final size:111
Alignment explanation
Indices: 2094470--2094696 Score: 300
Period size: 112 Copynumber: 2.0 Consensus size: 111
2094460 TATAATATAG
* * *
2094470 TTTTTGAAAACGTATAATATATA-GTTTTT-GATGGTTTTTGAAAAAAATATAATATATAGTTTT
1 TTTTTGAAAACGAATAATATATATATTTTTAAATGGTTTTTG-AAAAAATATAATATATAGTTTT
*
2094533 TTAAAAATGG-TTTTGGAAAAAAACATATATAATATAGTTTTTGAAAACATA
65 TT--AAATGGTTTTTGG---AAAACATATATAACATAGTTTTTGAAAACATA
*
2094584 TTTTTGAAAAC-AAGTAATATATATATTTTTAAAATGGTTTTTGAAAACATATAATATATAGTTT
1 TTTTTGAAAACGAA-TAATATATATATTTTT-AAATGGTTTTTGAAAAAATATAATATATAGTTT
*
2094648 TTTAAATGGTTTTTTGAAAACATATATAACATAGTTTTTGAAAACATA
64 TTTAAATGGTTTTTGGAAAACATATATAACATAGTTTTTGAAAACATA
2094696 T
1 T
2094697 AATATATAGT
Statistics
Matches: 102, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
112 32 0.31
113 1 0.01
114 26 0.25
115 10 0.10
116 23 0.23
117 10 0.10
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.43
Consensus pattern (111 bp):
TTTTTGAAAACGAATAATATATATATTTTTAAATGGTTTTTGAAAAAATATAATATATAGTTTTT
TAAATGGTTTTTGGAAAACATATATAACATAGTTTTTGAAAACATA
Found at i:2094715 original size:24 final size:24
Alignment explanation
Indices: 2094664--2094715 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
2094654 TGGTTTTTTG
**
2094664 AAAACATATATAACATAGTTTTTG
1 AAAACATATATAACATAGTTTTAA
*
2094688 AAAACATATA-ATATATAGTTTTAA
1 AAAACATATATA-ACATAGTTTTAA
2094712 AAAA
1 AAAA
2094716 TAGTTTTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.35
Consensus pattern (24 bp):
AAAACATATATAACATAGTTTTAA
Found at i:2094723 original size:61 final size:61
Alignment explanation
Indices: 2094620--2094737 Score: 175
Period size: 61 Copynumber: 1.9 Consensus size: 61
2094610 TTTTAAAATG
** *
2094620 GTTTTTGAAAACATATAATATATAGTTTTTTAAATGGTTTTTTGAAAACATATATAACATA
1 GTTTTTGAAAACATATAATATATAGTTTTAAAAATAGTTTTTTGAAAACATATATAACATA
**
2094681 GTTTTTGAAAACATATAATATATAGTTTTAAAAAATAG-TTTTTGAAAATGTATATAA
1 GTTTTTGAAAACATATAATATATAGTTTT-AAAAATAGTTTTTTGAAAACATATATAA
2094738 TATATATAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
61 46 0.90
62 5 0.10
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.43
Consensus pattern (61 bp):
GTTTTTGAAAACATATAATATATAGTTTTAAAAATAGTTTTTTGAAAACATATATAACATA
Found at i:2096189 original size:17 final size:17
Alignment explanation
Indices: 2096167--2096219 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 17
2096157 CTTTTATTCC
2096167 TTTATTTATTTATTTAT
1 TTTATTTATTTATTTAT
*
2096184 TTTATTAAATTATATTTTAT
1 TTTATT-TATT-TA-TTTAT
2096204 TTTACTTTA-TTATTTA
1 TTTA-TTTATTTATTTA
2096220 ACATTCATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 10 0.33
18 5 0.17
19 3 0.10
20 10 0.33
21 2 0.07
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTATTTATTTATTTAT
Found at i:2104758 original size:98 final size:95
Alignment explanation
Indices: 2104656--2104972 Score: 246
Period size: 94 Copynumber: 3.3 Consensus size: 95
2104646 TTTAATTTGA
2104656 AATATACAAAAATATATATAATTATTTTTAATATTCAAAGTTAAAAAGGTAACAAATACTTTTTT
1 AATATAC-AAAAT-TATATAATTATTTTTAATATTCAAAGTTAAAAAGGTAACAAATACTTTTTT
*
2104721 AAATTGACATATTCAAAGAGTAATTATCCTACT
64 ATATTGACATATT-AAAGAGTAATTATCCTACT
* * * * * * * *
2104754 AATATTC-AAATTAAATAA-TATATTTAAT-TTACAATGGTCAAAAGGT-A-AACT-C-CTTTTA
1 AATATACAAAATTATATAATTATTTTTAATATT-CAAAGTTAAAAAGGTAACAAATACTTTTTTA
* * ** *
2104812 CTATT--CAAACTTAAACA-TATATTATTTTAATTT
65 -TATTGACATA-TTAAAGAGTA-ATTATCCT-A-CT
* *
2104845 GAAATATACAAAATTATATAATTATCTTTTAATATTCAAAATTAAAAAGATAACAAATACCTTTT
1 --AATATACAAAATTATATAATTAT-TTTTAATATTCAAAGTTAAAAAGGTAACAAATA-CTTTT
*
2104910 TTATATTGACTTATTAAAAGAGTAATTATCCTACT
62 TTATATTGACATATT-AAAGAGTAATTATCCTACT
*
2104945 AATATTC-AAATTA-A-AATTATCTTTTAAT
1 AATATACAAAATTATATAATTAT-TTTTAAT
2104973 TTGCAATAGT
Statistics
Matches: 167, Mismatches: 31, Indels: 45
0.69 0.13 0.19
Matches are distributed among these distances:
88 2 0.01
89 13 0.08
90 8 0.05
91 5 0.03
92 3 0.02
93 9 0.05
94 31 0.19
95 23 0.14
96 21 0.13
97 9 0.05
98 15 0.09
100 6 0.04
101 8 0.05
102 12 0.07
103 2 0.01
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (95 bp):
AATATACAAAATTATATAATTATTTTTAATATTCAAAGTTAAAAAGGTAACAAATACTTTTTTAT
ATTGACATATTAAAGAGTAATTATCCTACT
Found at i:2104933 original size:191 final size:192
Alignment explanation
Indices: 2104573--2104987 Score: 615
Period size: 191 Copynumber: 2.2 Consensus size: 192
2104563 ATTAAACAGA
* * * *
2104573 TAAAATTATCTTTTAATTTGA-AATATTCAAAAGATAAAACTCCTTTTACCATTCAAACTTAAAT
1 TAAAAATATCATTTAATTT-ACAATAGTCAAAAGATAAAACTCCTTTTACCATTCAAACTTAAAC
*
2104637 AGATATTATTTTAATTTGAAATATACAAAAATATATATAATTATTTTTAATATTCAAAGTTAAAA
65 AGATATTATTTTAATTTGAAATATACAAAAATATATATAATTATTTTTAATATTCAAAATTAAAA
* *
2104702 AGGTAACAAATACTTTTTTAAATTGACATATTCAAAGAGTAATTATCCTACTAATATTCAAAT
130 AGATAACAAATACTTTTTTAAATTGACATATTAAAAGAGTAATTATCCTACTAATATTCAAAT
* * *
2104765 TAAATAATAT-ATTTAATTTACAATGGTCAAAAGGT-AAACTCCTTTTACTATTCAAACTTAAAC
1 TAAA-AATATCATTTAATTTACAATAGTCAAAAGATAAAACTCCTTTTACCATTCAAACTTAAAC
*
2104828 ATATATTATTTTAATTTGAAATATAC-AAAAT-TATATAATTATCTTTTAATATTCAAAATTAAA
65 AGATATTATTTTAATTTGAAATATACAAAAATATATATAATTAT-TTTTAATATTCAAAATTAAA
* *
2104891 AAGATAACAAATACCTTTTTTATATTGACTTATTAAAAGAGTAATTATCCTACTAATATTCAAAT
129 AAGATAACAAATA-CTTTTTTAAATTGACATATTAAAAGAGTAATTATCCTACTAATATTCAAAT
* * *
2104956 TAAAATTATCTTTTAATTTGCAATAGTCAAAA
1 TAAAAATATCATTTAATTTACAATAGTCAAAA
2104988 TGATTATGAG
Statistics
Matches: 201, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
189 11 0.05
190 40 0.20
191 123 0.61
192 23 0.11
193 4 0.02
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (192 bp):
TAAAAATATCATTTAATTTACAATAGTCAAAAGATAAAACTCCTTTTACCATTCAAACTTAAACA
GATATTATTTTAATTTGAAATATACAAAAATATATATAATTATTTTTAATATTCAAAATTAAAAA
GATAACAAATACTTTTTTAAATTGACATATTAAAAGAGTAATTATCCTACTAATATTCAAAT
Found at i:2106594 original size:14 final size:15
Alignment explanation
Indices: 2106575--2106603 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2106565 AATATATTGA
2106575 ATAATAA-AATATTT
1 ATAATAATAATATTT
2106589 ATAATAATAATATTT
1 ATAATAATAATATTT
2106604 TAAACTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATAATAATATTT
Found at i:2107137 original size:3 final size:3
Alignment explanation
Indices: 2107120--2107159 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
2107110 CAATCATATG
2107120 TAA TAA -AA CTAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
2107160 TAAATATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.12
3 28 0.82
4 2 0.06
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:2107475 original size:117 final size:117
Alignment explanation
Indices: 2107323--2107817 Score: 776
Period size: 117 Copynumber: 4.2 Consensus size: 117
2107313 CGTTGTTGAA
2107323 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTATGAAC
1 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTATGAAC
* * * * *
2107388 TCGCCACTGGAAATGTTGATCTACCTCCTTTTGTGATGGAATCAAACCAAGG
66 TCTCCATTGAAAATGTTGATCCACCTCCTTCTGTGATGGAATCAAACCAAGG
2107440 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTATGAAC
1 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTATGAAC
* * *
2107505 TCTCAATTGAAAATGTTGATCCACCTCCTTCTGTGGTGGAATCAAACGAAGG
66 TCTCCATTGAAAATGTTGATCCACCTCCTTCTGTGATGGAATCAAACCAAGG
* * *
2107557 TTGAACAAGTTCTTCTCAATATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTATAAAT
1 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTATGAAC
* * * * ** *
2107622 TCTCCATTGAAATTGTTTATCCACCTCCTTCTG-CAGTGGACTTGAACTAAGG
66 TCTCCATTGAAAATGTTGATCCACCTCCTTCTGTGA-TGGAATCAAACCAAGG
*
2107674 TTGAACAAGTTCTTCTCATTATGAACTTCTTTTTCCTCATTGGATGAGTTCTTCTCATTATGAAC
1 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTATGAAC
* * *
2107739 TCTCCATTGAAAATGTTGATCCACCTCCTTCTATGATAGAATCGAACCAAGG
66 TCTCCATTGAAAATGTTGATCCACCTCCTTCTGTGATGGAATCAAACCAAGG
2107791 TTGAACAAGTTCTTCTCATTATGAACT
1 TTGAACAAGTTCTTCTCATTATGAACT
2107818 CTCCACTGAA
Statistics
Matches: 344, Mismatches: 32, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
117 343 1.00
118 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.38
Consensus pattern (117 bp):
TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTATGAAC
TCTCCATTGAAAATGTTGATCCACCTCCTTCTGTGATGGAATCAAACCAAGG
Found at i:2108628 original size:21 final size:20
Alignment explanation
Indices: 2108591--2108629 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
2108581 ATGCATTTTC
**
2108591 TATGATGCAAATGATGTTCT
1 TATGATGCAAAAAATGTTCT
2108611 TATGAATGCAAAAAATGTT
1 TATG-ATGCAAAAAATGTT
2108630 GATGCAATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (20 bp):
TATGATGCAAAAAATGTTCT
Found at i:2109860 original size:52 final size:50
Alignment explanation
Indices: 2109775--2109917 Score: 164
Period size: 52 Copynumber: 2.8 Consensus size: 50
2109765 ATATCCAACC
* * * *
2109775 TTTTCTTGCTGGTGTGAGCCTTCAAGATGCCCCACATGGATTACTT-TTGTCT
1 TTTTCATGCTGATGTGAGCCTTC-AGATACCCCACATGGATTACTTCTT-T-G
*
2109827 TTTTCATGCTGATGTGAGCCTTCAGTATACCCCACATAGATTACTTCTTTG
1 TTTTCATGCTGATGTGAGCCTTCAG-ATACCCCACATGGATTACTTCTTTG
* *
2109878 TTTTCATGTTGATGTGAGCCTTTAAGATA-CCCACATGGAT
1 TTTTCATGCTGATGTGAGCC-TTCAGATACCCCACATGGAT
2109918 AATATGGACC
Statistics
Matches: 80, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
50 10 0.12
51 24 0.30
52 44 0.55
53 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (50 bp):
TTTTCATGCTGATGTGAGCCTTCAGATACCCCACATGGATTACTTCTTTG
Found at i:2111046 original size:8 final size:8
Alignment explanation
Indices: 2111014--2111101 Score: 106
Period size: 8 Copynumber: 10.2 Consensus size: 8
2111004 ATCTTCCTCA
2111014 TTCTTTTT
1 TTCTTTTT
2111022 ATTACTTATTCT
1 -TT-CTT-TT-T
2111034 TTCTTTTT
1 TTCTTTTT
2111042 TTCTTTTT
1 TTCTTTTT
2111050 TTCTTTTT
1 TTCTTTTT
2111058 TTC-TTTT
1 TTCTTTTT
2111065 TTCTTTTT
1 TTCTTTTT
2111073 TTCCTTTTT
1 TT-CTTTTT
2111082 TTCTTTTTT
1 TTC-TTTTT
2111091 TTCCTTTTT
1 TT-CTTTTT
2111100 TT
1 TT
2111102 TCCTTTTTCA
Statistics
Matches: 72, Mismatches: 0, Indels: 14
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.10
8 27 0.38
9 26 0.36
10 7 0.10
11 4 0.06
12 1 0.01
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (8 bp):
TTCTTTTT
Found at i:2111052 original size:16 final size:17
Alignment explanation
Indices: 2111014--2111101 Score: 110
Period size: 18 Copynumber: 5.1 Consensus size: 17
2111004 ATCTTCCTCA
*
2111014 TTCTTTTTATTACTTATTCT
1 TTCTTTTT-TTCCTT-TT-T
2111034 TTCTTTTTTT-CTTTTT
1 TTCTTTTTTTCCTTTTT
2111050 TTCTTTTTTT-C-TTTT
1 TTCTTTTTTTCCTTTTT
2111065 TTCTTTTTTTCCTTTTT
1 TTCTTTTTTTCCTTTTT
2111082 TTCTTTTTTTTCCTTTTT
1 TTC-TTTTTTTCCTTTTT
2111100 TT
1 TT
2111102 TCCTTTTTCA
Statistics
Matches: 65, Mismatches: 0, Indels: 8
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.22
16 13 0.20
17 9 0.14
18 19 0.29
19 2 0.03
20 8 0.12
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (17 bp):
TTCTTTTTTTCCTTTTT
Found at i:2111061 original size:24 final size:25
Alignment explanation
Indices: 2111014--2111101 Score: 108
Period size: 23 Copynumber: 3.4 Consensus size: 25
2111004 ATCTTCCTCA
2111014 TTCTTTTTATTACTTATTCTTTCTTTTT
1 TTCTTTTT-TTACTT-TT-TTTCTTTTT
2111042 TTCTTTTTTT-CTTTTTTTC-TTTT
1 TTCTTTTTTTACTTTTTTTCTTTTT
*
2111065 TTCTTTTTTTCCTTTTTTTCTTTTTT
1 TTCTTTTTTTACTTTTTTTC-TTTTT
2111091 TTCCTTTTTTT
1 TT-CTTTTTTT
2111102 TCCTTTTTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 9
0.86 0.00 0.14
Matches are distributed among these distances:
23 14 0.25
24 13 0.23
25 2 0.04
26 9 0.16
27 10 0.18
28 8 0.14
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (25 bp):
TTCTTTTTTTACTTTTTTTCTTTTT
Found at i:2111109 original size:1 final size:1
Alignment explanation
Indices: 2111037--2111102 Score: 51
Period size: 1 Copynumber: 66.0 Consensus size: 1
2111027 TTATTCTTTC
* * * * ** * **
2111037 TTTTTTTCTTTTTTTCTTTTTTTCTTTTTTCTTTTTTTCCTTTTTTTCTTTTTTTTCCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2111102 T
1 T
2111103 CCTTTTTCAT
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:2114248 original size:15 final size:14
Alignment explanation
Indices: 2114202--2114263 Score: 56
Period size: 14 Copynumber: 4.5 Consensus size: 14
2114192 CAAACATAAA
*
2114202 AAATGCAAAGATGC
1 AAATGCAAATATGC
* *
2114216 GAATAC-AA-ATGC
1 AAATGCAAATATGC
2114228 AAATGCAAATATGC
1 AAATGCAAATATGC
* *
2114242 AAAATGCAAAAATAC
1 -AAATGCAAATATGC
2114257 AAATGCA
1 AAATGCA
2114264 GATACAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
12 8 0.21
13 4 0.10
14 15 0.38
15 12 0.31
ACGTcount: A:0.55, C:0.15, G:0.15, T:0.16
Consensus pattern (14 bp):
AAATGCAAATATGC
Found at i:2116268 original size:14 final size:15
Alignment explanation
Indices: 2116249--2116277 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2116239 AATATATTGA
2116249 ATAATAA-AATATTT
1 ATAATAATAATATTT
2116263 ATAATAATAATATTT
1 ATAATAATAATATTT
2116278 TAAACTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATAATAATATTT
Found at i:2118049 original size:15 final size:15
Alignment explanation
Indices: 2118019--2118049 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2118009 CACTTCTCCC
*
2118019 ATTTATCATTTTAAA
1 ATTTATCATTTAAAA
2118034 ATTTATCATTTAAAA
1 ATTTATCATTTAAAA
2118049 A
1 A
2118050 ACACACTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTTATCATTTAAAA
Found at i:2120242 original size:8 final size:8
Alignment explanation
Indices: 2120229--2120253 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
2120219 CGGCGGAATA
2120229 GGTTTTGG
1 GGTTTTGG
2120237 GGTTTTGG
1 GGTTTTGG
2120245 GGTTTTGG
1 GGTTTTGG
2120253 G
1 G
2120254 TGTTCTTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (8 bp):
GGTTTTGG
Found at i:2120357 original size:20 final size:21
Alignment explanation
Indices: 2120303--2120365 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
2120293 GATTCCCCTG
2120303 TGGGGGGAATCGGTTCCCCTTCAA
1 TGGGGGG-ATCGGTT-CCC-TCAA
* *
2120327 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
2120347 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
2120366 TGCACCAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:2124211 original size:22 final size:21
Alignment explanation
Indices: 2124169--2124208 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2124159 GAGTTTGTTT
*
2124169 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
2124190 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
2124209 ACAATTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:2127145 original size:17 final size:19
Alignment explanation
Indices: 2127112--2127150 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
2127102 TTTTACAACT
2127112 TATAGAACATTAAATA-TAA
1 TATAGAACA-TAAATATTAA
2127131 TATAGAACA-AAATATTAA
1 TATAGAACATAAATATTAA
2127149 TA
1 TA
2127151 ATACAGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 5 0.26
19 9 0.47
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (19 bp):
TATAGAACATAAATATTAA
Found at i:2127523 original size:17 final size:19
Alignment explanation
Indices: 2127490--2127528 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
2127480 TTTTACAACT
2127490 TATAGAACATTAAATA-TAA
1 TATAGAACA-TAAATATTAA
2127509 TATAGAACA-AAATATTAA
1 TATAGAACATAAATATTAA
2127527 TA
1 TA
2127529 ATACAGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 5 0.26
19 9 0.47
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (19 bp):
TATAGAACATAAATATTAA
Found at i:2128851 original size:13 final size:13
Alignment explanation
Indices: 2128812--2128867 Score: 58
Period size: 13 Copynumber: 4.3 Consensus size: 13
2128802 AATGGTCAAC
* *
2128812 GGTCAACAGGTCA
1 GGTCAACGGGTCG
**
2128825 GGTCAACGAATCG
1 GGTCAACGGGTCG
2128838 GGTCAACGGGTCG
1 GGTCAACGGGTCG
* *
2128851 GGTTAATGGGTCG
1 GGTCAACGGGTCG
2128864 GGTC
1 GGTC
2128868 GGGTCAACCC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.21, C:0.20, G:0.39, T:0.20
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:2133933 original size:17 final size:19
Alignment explanation
Indices: 2133900--2133938 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
2133890 TTTTACAACT
2133900 TATAGAACATTAAATA-TAA
1 TATAGAACA-TAAATATTAA
2133919 TATAGAACA-AAATATTAA
1 TATAGAACATAAATATTAA
2133937 TA
1 TA
2133939 ATACAGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 5 0.26
19 9 0.47
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (19 bp):
TATAGAACATAAATATTAA
Found at i:2142597 original size:21 final size:21
Alignment explanation
Indices: 2142562--2142624 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
2142552 ATACTAAACC
* *
2142562 AACAGAGATAAATGATGGAGA
1 AACAAAGATAGATGATGGAGA
* * * *
2142583 AATACAGCTAGATGAAGGAGA
1 AACAAAGATAGATGATGGAGA
*
2142604 AACAAAGATAGATGATAGAGA
1 AACAAAGATAGATGATGGAGA
2142625 CTCATAAGCA
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.52, C:0.06, G:0.27, T:0.14
Consensus pattern (21 bp):
AACAAAGATAGATGATGGAGA
Found at i:2146326 original size:183 final size:182
Alignment explanation
Indices: 2145767--2146972 Score: 1731
Period size: 182 Copynumber: 6.6 Consensus size: 182
2145757 ATACAAATAA
* * * * * * * *
2145767 AAAATGGATCGACCCATAGCAATATTACAGGTACAAATATGACAAAACCGGTC-CCAAAATGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* * * * ** *
2145831 AAACTGGTAAAATGCTACCAGATATGTGT-CGAGTGTCGATAATTTAATATAAGTATCGAAACTT
66 AAACCGG-AAAAAGTTACCGGATATGT-TAAAAGTGTCGATAATTTAATATAAGTATCGACACTT
2145895 TCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
129 TCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * * *
2145949 AAAATGTATTGATCCTTACCAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATAACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
*
2146014 AAACCGGAAAAAGTTACCGGATATGTTAAAAATGTCGATAATTTAATATAAGTATCGACACTTTC
66 AAACCGGAAAAAGTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
* * * *
2146079 TGAATTTAAAAGAGAA-AACGTTATTGCACTTATAAAGTGTCGACACTTTATG
131 TGAATTTAAAAGAGAAGAA-GTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * * *
2146131 AAAATGTATCGATCCATAACAATATAATAGGTAAAAACATGATAAAACATGTCTCAAAATTGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* * * * * *
2146196 AAACCAGTAAAACGCTT-CCGGATATATTGAAAGTGTCGATAATTTAATACAAGTATCGAAACTT
66 AAACC-GGAAAAAG-TTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTT
* * **
2146260 TCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAA
129 TCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * *
2146314 AAAATATATCGATCCTTACCAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
*
2146379 AAACCGGAAAAAGTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATTGACACTTTC
66 AAACCGGAAAAAGTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
2146444 TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
131 TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
*
2146496 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* * * * * * * *
2146561 AAATCAGTAAAACGCTACCGGATATATTGAAAGTGTCGATAATTTAATATTAGTATCGGCACTTT
66 AAA-CCGGAAAAAGTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
*
2146626 CTGAATTTAAAAGAGAAGAAGTTATAGCGCTTAAAAAGTGTCGACACTTTATG
130 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * * *
2146679 AAAATGTATCGATCCTTACCAATATAACAGGTAAAAATATGATAAAACATGTCTCAAAAATGAAA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* *
2146744 AAACCGGAAAAAGTTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAATATCGACACTTTC
66 AAACCGGAAAAAGTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
*
2146809 TGAATTTAAAAGAGAAGAAGTTATAGCGCTTAAAAAGTGTCGACACTTTATG
131 TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* *
2146861 AAAATGTATCGAT-CAGAACAATATAACAGGTAAAAATATGATAAAACCGGTCTC-AAAATGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* * *
2146924 AAACCGGTAAATAGATACCGGATATGTTAAAAGTGTCGATACTTTAATA
66 AAACCGG-AAAAAGTTACCGGATATGTTAAAAGTGTCGATAATTTAATA
2146973 AGTACGAGTA
Statistics
Matches: 916, Mismatches: 99, Indels: 19
0.89 0.10 0.02
Matches are distributed among these distances:
180 15 0.02
181 78 0.09
182 481 0.53
183 338 0.37
184 4 0.00
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.27
Consensus pattern (182 bp):
AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
AAACCGGAAAAAGTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
Found at i:2146496 original size:365 final size:365
Alignment explanation
Indices: 2145767--2146972 Score: 1904
Period size: 365 Copynumber: 3.3 Consensus size: 365
2145757 ATACAAATAA
* * * * * * * *
2145767 AAAATGGATCGACCCATAGCAATATTACAGGTACAAATATGACAAAACCGGTCCCAAAA-TGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACA
** * * *
2145831 AAACTGGTAAAATGCTACCAGATATGTGTCG--AGTGTCGATAATTTAATATAAGTATCGAAACT
66 AAACCAGTAAAACGCTACCGGATATAT-T-GAAAGTGTCGATAATTTAATATAAGTATCGAAACT
*
2145894 TTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATT
129 TTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATC
*
2145959 GATCCTTACCAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATAACAAAACCGGAAA
194 GATCCTTACCAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACAAAACCGGAAA
*
2146024 AAGTTACCGGATATGTTAAAAATGTCGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAA
259 AAGTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAA
* * *
2146089 AGAGAA-AACGTTATTGCACTTATAAAGTGTCGACACTTTATG
324 AGAGAAGAA-GTTATAGCGCTTAAAAAGTGTCGACACTTTATG
* * *
2146131 AAAATGTATCGATCCATAACAATATAATAGGTAAAAACATGATAAAACATGTCTCAAAATTGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACA
* *
2146196 AAACCAGTAAAACGCTTCCGGATATATTGAAAGTGTCGATAATTTAATACAAGTATCGAAACTTT
66 AAACCAGTAAAACGCTACCGGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTT
* * ** *
2146261 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATATATCGA
131 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
2146326 TCCTTACCAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACAAAACCGGAAAAA
196 TCCTTACCAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACAAAACCGGAAAAA
*
2146391 GTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATTGACACTTTCTGAATTTAAAAG
261 GTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAG
*
2146456 AGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
326 AGAAGAAGTTATAGCGCTTAAAAAGTGTCGACACTTTATG
2146496 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACA
* * **
2146561 AAATCAGTAAAACGCTACCGGATATATTGAAAGTGTCGATAATTTAATATTAGTATCGGCACTTT
66 AAACCAGTAAAACGCTACCGGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTT
*
2146626 CTGAATTTAAAAGAGAAGAAGTTATAGCGCTTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
131 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
* *
2146691 TCCTTACCAATATAACAGGTAAAAATATGATAAAACATGTCTCAAAAATGAAAAAACCGGAAAAA
196 TCCTTACCAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACAAAACCGGAAAAA
* *
2146756 GTTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAATATCGACACTTTCTGAATTTAAAAG
261 GTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAG
2146821 AGAAGAAGTTATAGCGCTTAAAAAGTGTCGACACTTTATG
326 AGAAGAAGTTATAGCGCTTAAAAAGTGTCGACACTTTATG
* *
2146861 AAAATGTATCGAT-CAGAACAATATAACAGGTAAAAATATGATAAAACCGGTCTCAAAA-TGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACA
* * * * *
2146924 AAACCGGTAAATA-GATACCGGATATGTTAAAAGTGTCGATACTTTAATA
66 AAACCAGTAAA-ACGCTACCGGATATATTGAAAGTGTCGATAATTTAATA
2146973 AGTACGAGTA
Statistics
Matches: 777, Mismatches: 60, Indels: 11
0.92 0.07 0.01
Matches are distributed among these distances:
363 47 0.06
364 93 0.12
365 635 0.82
366 2 0.00
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.27
Consensus pattern (365 bp):
AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACA
AAACCAGTAAAACGCTACCGGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTT
CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
TCCTTACCAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACAAAACCGGAAAAA
GTTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAG
AGAAGAAGTTATAGCGCTTAAAAAGTGTCGACACTTTATG
Found at i:2147385 original size:18 final size:19
Alignment explanation
Indices: 2147362--2147406 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
2147352 AGTTAAATAT
2147362 TTATAGGTA-AAAATGATA
1 TTATAGGTAGAAAATGATA
2147380 TTATAGGTAGAAAATGATA
1 TTATAGGTAGAAAATGATA
*
2147399 TTTTAGGT
1 TTATAGGT
2147407 TGTATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (19 bp):
TTATAGGTAGAAAATGATA
Found at i:2147681 original size:18 final size:18
Alignment explanation
Indices: 2147658--2147696 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
2147648 TTGAAATGGT
2147658 AATTGAATTA-AAACTTTA
1 AATTG-ATTACAAACTTTA
*
2147676 AATTGATTACAAATTTTA
1 AATTGATTACAAACTTTA
2147694 AAT
1 AAT
2147697 GTTGACAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (18 bp):
AATTGATTACAAACTTTA
Found at i:2148710 original size:22 final size:22
Alignment explanation
Indices: 2148659--2148714 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
2148649 GTTTTTGTTT
*
2148659 TTTTTTTATATAAAATGATAGTA
1 TTTTATTATATAAAATGATAG-A
*
2148682 TAGTTATTATATAAAATGATA-A
1 T-TTTATTATATAAAATGATAGA
2148704 CTTTTATTATA
1 -TTTTATTATA
2148715 AATGCAGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 9 0.32
23 2 0.07
24 17 0.61
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (22 bp):
TTTTATTATATAAAATGATAGA
Found at i:2150590 original size:20 final size:20
Alignment explanation
Indices: 2150567--2150609 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2150557 AATCCACCAC
*
2150567 ATGCAACTATATGCTCCTAA
1 ATGCAACTAAATGCTCCTAA
* *
2150587 ATGCATCTAAATGGTCCTAA
1 ATGCAACTAAATGCTCCTAA
2150607 ATG
1 ATG
2150610 GGCTCTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
ATGCAACTAAATGCTCCTAA
Found at i:2153230 original size:6 final size:6
Alignment explanation
Indices: 2153219--2153245 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
2153209 AAAAGAGGTT
2153219 AAAGTG AAAGTG AAAGTG AAAGTG AAA
1 AAAGTG AAAGTG AAAGTG AAAGTG AAA
2153246 AATGGAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.30, T:0.15
Consensus pattern (6 bp):
AAAGTG
Found at i:2161616 original size:22 final size:18
Alignment explanation
Indices: 2161568--2161606 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
2161558 GAAAAACTTT
*
2161568 GAAGAAGAGAAGATGGAG
1 GAAGAAGAAAAGATGGAG
2161586 GAAGAAGAAAAGATGGAG
1 GAAGAAGAAAAGATGGAG
2161604 GAA
1 GAA
2161607 ATGAGGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.41, T:0.05
Consensus pattern (18 bp):
GAAGAAGAAAAGATGGAG
Found at i:2162659 original size:19 final size:19
Alignment explanation
Indices: 2162633--2162682 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
2162623 AAATACATGG
2162633 TTAA-TTTGTATAAGATTT
1 TTAATTTTGTATAAGATTT
*
2162651 TTAATTTTGTATACGATTT
1 TTAATTTTGTATAAGATTT
* *
2162670 ATAATTTTATATA
1 TTAATTTTGTATA
2162683 TGAATGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.56
Consensus pattern (19 bp):
TTAATTTTGTATAAGATTT
Found at i:2163857 original size:199 final size:199
Alignment explanation
Indices: 2163028--2165273 Score: 3257
Period size: 199 Copynumber: 11.3 Consensus size: 199
2163018 ACAAACTTAT
*
2163028 GTGTCGATACATTTATAACAAGTGTCGATCGCAAAAACATCGAAAACCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
2163093 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGT--AAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAGTA
2163156 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
2163221 AAAA
196 AAAA
* * * * *
2163225 GTGTCGATACATTTGTAACAAGTATCGATCCAAAAAACATTGAAAACTATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* * * ** *
2163290 GGTAGATTAGCAATATAAACAGTCTAAATATACCAATTTTTGAGAAAACATGTGTAAAAAAA-TA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAGTA
* * * *
2163354 TCAACACAAATCAAACAAGTGTCAATACTTTTAGTCCAGAATGTATTTCAAAACCAAGTGCCCTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
2163419 AAAA
196 AAAA
* *
2163423 GTGTCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCGAAAACTATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* ** * *
2163488 GGTAGATTAGCAATATAACCGGTCTAAATATATTGGTTTTTGAGAAAACATGTGTAAAACAA-TA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAGTA
*
2163552 TCGACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
2163617 AAAA
196 AAAA
* * * * *
2163621 GTGTCGATACATTTGTAACAAGTGTCGATCCCAAAAATATCAAAAACTATAATTATAATGTACTA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* * *
2163686 GGTAGATTAGCAATATAACCGGTCTAAATATACCGATTTTTTAGAAAACAGGTGTAAAAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAGTA
* * * *
2163751 TCGACACAAATCAAACAAGTTTCGATACTTTTTGTCCATAATGTATTTCAAAACCAAGTGCAATA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
2163816 AAAA
196 AAAA
* * * *
2163820 GTGTCGATACATTTGTAACAAGTGTC-ATTCTCAAAAATATCGAAAACCATAATTATAATATAAT
1 GTGTCGATACATTTATAACAAGTGTCGA-TCCCAAAAACATCGAAAACCATAATTATAATGTAAT
* * * *
2163884 AGGTAGATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGATGTACAAACAGT
65 AGGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAGT
** * *
2163949 ATCGACACAAATCAAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTTCCCT
130 ATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACT
2164014 AAAAA
195 AAAAA
* *
2164019 GTGTCGATACATTTGTAACAAGTATCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* * * * * *
2164084 GGTAAATTAGAAATATAATCGGTCTAAATATACCGATTTTTGAGAAAACAGATGTACAAACAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAGTA
*
2164149 TCGACACAAAT-AGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAGAACCAAGTGCAC-
131 TCGACACAAATCA-AACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACT
2164212 ATAAAA
195 A-AAAA
* * *
2164218 GTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* * * * *
2164283 GGTAAATTATTC-ATGTAAACGGTCTTAATATACCGGTTTTTGAGAAAATAGGTGTAAAAAAAAG
66 GGTAAATTA-GCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGT-AAAAAAAG
*
2164347 TAACGACACAAAT-AGAACAAGTGTCGATACTTTTGGTCCAGAATGTA-TTCAAGAACCAAGTGC
129 TATCGACACAAATCA-AACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAA-AACCAAGTGC
2164410 ACTAAAAA
192 ACTAAAAA
*
2164418 GTGTCGATACATTTATAACAAGTGTCGATCCCGAAAACATCGAACAA-CATAATTATAATGTAAT
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAA-AACCATAATTATAATGTAAT
* * * *
2164482 AGGTAAATTATTC-ATGTAAACGGTCTAAATATACCGGTTTTTTAGAAAACAGGTGTAAAAAAAG
65 AGGTAAATTA-GCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAG
* * *
2164546 TATCGACATAAATCAAACAAGTGTCGATACTTTTGCTCCAAAATGTATTTCAAAACCAAGTGCAC
129 TATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCAC
2164611 TAAAAA
194 TAAAAA
2164617 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* * ** * * *
2164682 GGTAAATTAGAAATATAACCAGTCTAAATATATTGGTTTTTGAGAAAACAAGTGTACAAACAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAGTA
*
2164747 TCGACACAAAT-AGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAGAACCAAGTGCAC-
131 TCGACACAAATCA-AACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACT
2164810 ATAAAA
195 A-AAAA
* * *
2164816 GTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* * * *
2164881 GGTAAATTATTC-ATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACGGGTGTAAAAAAAGT
66 GGTAAATTA-GCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAGT
* *
2164945 ATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCATT
130 ATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACT
2165010 AAAAA
195 AAAAA
2165015 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAAAACATCGAAAACCATAATTATAATGTAA
1 GTGTCGATACATTTATAACAAGTGTCGATCCC--AAAAACATCGAAAACCATAATTATAATGTAA
* * * * * *
2165080 TAGGTAAATTAGAAATATAACCGATCTAAATATACCGATTTTTGAAAAAACAGGTGTACAAACAG
64 TAGGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAG
* ** * * * *
2165145 TATCGACACAAAT-AGAATAAGTGTATATACTTTTTGTCTAGAATGTATTTCAGAACCAACTGCA
129 TATCGACACAAATCA-AACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCA
2165209 C-AACAAA
193 CTAA-AAA
* * * *
2165216 GTTTCGATACATTTATAACAATTGTCGATCCCAAAAATATCGAAAAACATAATTATAA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAA
2165274 CCAAATGTCT
Statistics
Matches: 1865, Mismatches: 158, Indels: 50
0.90 0.08 0.02
Matches are distributed among these distances:
197 108 0.06
198 375 0.20
199 1016 0.54
200 193 0.10
201 173 0.09
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (199 bp):
GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAGTA
TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
AAAA
Found at i:2164561 original size:797 final size:795
Alignment explanation
Indices: 2163028--2165273 Score: 3369
Period size: 797 Copynumber: 2.8 Consensus size: 795
2163018 ACAAACTTAT
*
2163028 GTGTCGATACATTTATAACAAGTGTCGATCGCAAAAACATCGAAAACCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
*
2163093 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTA-AAA-AGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGATGTACAAACAGTA
2163156 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
* * *
2163221 AAAAGTGTCGATACATTTGTAACAAGTATCGATCCAAAAAACATTGAAAACTATAATTATAATGT
196 AAAAGTGTCGATACATTTGTAACAAGTATCGATCCCAAAAACATCGAAAACCATAATTATAATGT
* * * *
2163286 AATAGGTAGATTAGCAATATAAACAGTCTAAATATACCAATTTTTGAGAAAACATGTGTAAAAAA
261 AATAGGTAAATTAGAAATATAAACGGTCTAAATATACCGATTTTTGAGAAAACA-GTGTAAAAAA
* * * *
2163351 ATATCAACACAAATCAAACAAGTGTCAATACTTTTAGTCCAGAATGTATTTCAAAACCAAGTGC-
325 GTATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCA
* *
2163415 CCTAAAAAGTGTCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCG-AAAACTATAATTAT
390 CATAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAAAC-ATAATTAT
* * ** *
2163479 AATGTAATAGGTAGATTAGCAATATAACCGGTCTAAATATATTGGTTTTTGAGAAAACATGTGTA
454 AATGTAATAGGTAAATTAAC-ATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTA
* *
2163544 AAACAA-TATCGACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAA-AACC
518 AAAAAAGTATCGACACAAATAGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAGAACC
*
2163607 AAGTGCACTAAAAAGTGTCGATACATTTGTAACAAGTGTCGATCCCAAAAATATC-AAAAACTAT
583 AAGTGCACTAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAATATCGAAAAAC-AT
* * *
2163671 AATTATAATGTACTAGGTAGATTAGCAATATAACCGGTCTAAATATACCGATTTTTTAGAAAACA
647 AATTATAATGTAATAGGTAAATTAGCAATATAAACGGTCTAAATATACCGATTTTTTAGAAAACA
* *
2163736 GGTGTAAAAAAAGTATCGACACAAATCAAACAAGTTTCGATACTTTTTG-TCCATAATGTATTTC
712 GGTGTAAAAAAAGTATCGACACAAATCAAACAAGTGTCGATAC-TTTTGCTCCAAAATGTATTTC
2163800 AAAACCAAGTGCAATAAAAA
776 AAAACCAAGTGCAATAAAAA
* * * *
2163820 GTGTCGATACATTTGTAACAAGTGTC-ATTCTCAAAAATATCGAAAACCATAATTATAATATAAT
1 GTGTCGATACATTTATAACAAGTGTCGA-TCCCAAAAACATCGAAAACCATAATTATAATGTAAT
*
2163884 AGGTAGATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGATGTACAAACAGT
65 AGGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGATGTACAAACAGT
** * *
2163949 ATCGACACAAATCAAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTTCCCT
130 ATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACT
2164014 AAAAAGTGTCGATACATTTGTAACAAGTATCGATCCCAAAAACATCGAAAACCATAATTATAATG
195 AAAAAGTGTCGATACATTTGTAACAAGTATCGATCCCAAAAACATCGAAAACCATAATTATAATG
*
2164079 TAATAGGTAAATTAGAAATATAATCGGTCTAAATATACCGATTTTTGAGAAAACAGATGTACAAA
260 TAATAGGTAAATTAGAAATATAAACGGTCTAAATATACCGATTTTTGAGAAAACAG-TGTA-AAA
* *
2164144 CAGTATCGACACAAAT-AGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAGAACCAAGT
323 AAGTATCGACACAAATCA-AACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGT
* *
2164208 GCACAT-AAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATT
387 GCACATAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATT
* * * * *
2164272 ATAATGTAATAGGTAAATTATTCATGTAAACGGTCTTAATATACCGGTTTTTGAGAAAATAGGTG
452 ATAATGTAATAGGTAAATTA-ACATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTG
*
2164337 TAAAAAAAAGTAACGACACAAATAGAACAAGTGTCGATACTTTTGGTCCAGAATGTA-TTCAAGA
516 T-AAAAAAAGTATCGACACAAATAGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAGA
* * *
2164401 ACCAAGTGCACTAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCGAAAACATCGAACAAC
580 ACCAAGTGCACTAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAATATCGAAAAAC
* * *
2164466 ATAATTATAATGTAATAGGTAAATTATTC-ATGTAAACGGTCTAAATATACCGGTTTTTTAGAAA
645 ATAATTATAATGTAATAGGTAAATTA-GCAATATAAACGGTCTAAATATACCGATTTTTTAGAAA
*
2164530 ACAGGTGTAAAAAAAGTATCGACATAAATCAAACAAGTGTCGATACTTTTGCTCCAAAATGTATT
709 ACAGGTGTAAAAAAAGTATCGACACAAATCAAACAAGTGTCGATACTTTTGCTCCAAAATGTATT
*
2164595 TCAAAACCAAGTGCACTAAAAA
774 TCAAAACCAAGTGCAATAAAAA
2164617 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* * **
2164682 GGTAAATTAGAAATATAACCAGTCTAAATATATTGGTTTTTGAGAAAACA-AGTGTACAAACAGT
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGA-TGTACAAACAGT
*
2164746 ATCGACACAAAT-AGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAGAACCAAGTGCAC
130 ATCGACACAAATCA-AACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCAC
** * * *
2164810 -ATAAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAA
194 TA-AAAAGTGTCGATACATTTGTAACAAGTATCGATCCCAAAAACATCGAAAACCATAATTATAA
*** * * *
2164874 TGTAATAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACGGGTGTAAA
258 TGTAATAGGTAAATTAGAAATATAAACGGTCTAAATATACCGATTTTTGAGAAAAC-AGTGT-AA
*
2164939 AAAAGTATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAG
321 AAAAGTATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAG
* *
2165004 TGCA-TTAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAAAACATCGAAAACCATA
386 TGCACATAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCC--AAAAACATCGAAAAACATA
* * * *
2165068 ATTATAATGTAATAGGTAAATTAGAAATATAACCGATCTAAATATACCGATTTTTGAAAAAACAG
449 ATTATAATGTAATAGGTAAATTA-ACATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAG
* * * ** * *
2165133 GTGTACAAACAGTATCGACACAAATAGAATAAGTGTATATACTTTTTGTCTAGAATGTATTTC-A
513 GTGTAAAAAAAGTATCGACACAAATAGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAA
* * *
2165197 GAACCAACTGCAC-AACAAAGTTTCGATACATTTATAACAATTGTCGATCCCAAAAATATCGAAA
578 GAACCAAGTGCACTAA-AAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAATATCGAAA
2165261 AACATAATTATAA
642 AACATAATTATAA
2165274 CCAAATGTCT
Statistics
Matches: 1316, Mismatches: 111, Indels: 48
0.89 0.08 0.03
Matches are distributed among these distances:
791 1 0.00
792 113 0.09
793 4 0.00
794 181 0.14
795 165 0.13
796 28 0.02
797 619 0.47
798 126 0.10
799 79 0.06
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (795 bp):
GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGATGTACAAACAGTA
TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
AAAAGTGTCGATACATTTGTAACAAGTATCGATCCCAAAAACATCGAAAACCATAATTATAATGT
AATAGGTAAATTAGAAATATAAACGGTCTAAATATACCGATTTTTGAGAAAACAGTGTAAAAAAG
TATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCAC
ATAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAA
TGTAATAGGTAAATTAACATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAA
AAAGTATCGACACAAATAGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAGAACCAAG
TGCACTAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAATATCGAAAAACATAATT
ATAATGTAATAGGTAAATTAGCAATATAAACGGTCTAAATATACCGATTTTTTAGAAAACAGGTG
TAAAAAAAGTATCGACACAAATCAAACAAGTGTCGATACTTTTGCTCCAAAATGTATTTCAAAAC
CAAGTGCAATAAAAA
Found at i:2168715 original size:20 final size:20
Alignment explanation
Indices: 2168687--2168725 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2168677 AAATCGATAA
*
2168687 TTATTATGTAACAGGTAAAT
1 TTATAATGTAACAGGTAAAT
*
2168707 TTATAATGTAACCGGTAAA
1 TTATAATGTAACAGGTAAA
2168726 AATATACTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (20 bp):
TTATAATGTAACAGGTAAAT
Found at i:2168731 original size:20 final size:20
Alignment explanation
Indices: 2168692--2168731 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
2168682 GATAATTATT
**
2168692 ATGTAACAGGTAAATTTATA
1 ATGTAACAGGTAAAAATATA
*
2168712 ATGTAACCGGTAAAAATATA
1 ATGTAACAGGTAAAAATATA
2168732 CTGGTTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (20 bp):
ATGTAACAGGTAAAAATATA
Found at i:2168980 original size:23 final size:23
Alignment explanation
Indices: 2168954--2169001 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
2168944 TAATATGTCA
* *
2168954 ATATAAGTGCTACCTATTATATT
1 ATATAAGCGCTACCTAATATATT
2168977 ATATAAGCGCTACCTAATATATT
1 ATATAAGCGCTACCTAATATATT
2169000 AT
1 AT
2169002 TGTACTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.40
Consensus pattern (23 bp):
ATATAAGCGCTACCTAATATATT
Found at i:2170329 original size:23 final size:23
Alignment explanation
Indices: 2170298--2170370 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
2170288 ATAGGTAAAA
*
2170298 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
2170321 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
2170344 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
2170367 ATAT
1 ATAT
2170371 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:2170744 original size:23 final size:23
Alignment explanation
Indices: 2170713--2170785 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
2170703 ATAGGTAAAA
*
2170713 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
2170736 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
2170759 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
2170782 ATAT
1 ATAT
2170786 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:2171128 original size:431 final size:429
Alignment explanation
Indices: 2169902--2171797 Score: 3298
Period size: 415 Copynumber: 4.5 Consensus size: 429
2169892 AAATTTAAAA
* *
2169902 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTATAAAGTATCTATCCTTTTTATAAAA
1 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAA
* *
2169967 GTGTCCATACTTTTTTCACTGTGGAGAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
66 GTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
2170032 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
131 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
2170097 AATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATG
196 AATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATG
2170162 AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAACATTGAAACATAAA
261 AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA-ATTGAAACATAAA
*
2170227 TTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAATAG
325 TTACATAACTTT-AAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAG
2170292 GTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAAT
389 GTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAAT
2170333 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTC-TTTTTATAAA
1 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTA-TCATTTTTATAAA
2170397 AGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAG
65 AGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAG
*
2170462 ATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATT
130 ATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATT
*
2170527 AAATTAAAAATTCTAAATAATA-TTT-T---ATATCAAAACAATCAAATAATTTTTTGTGC-AA-
195 AAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAAT
*
2170585 -AAATGATTAAATT-ATATTGTAGGTGGAAAACATG-AA-A-TATTAAAAAAA-TGAAACATAAA
260 GAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAA
*
2170644 TTACATAAC-TTAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGG
325 TTACATAACTTTAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGG
2170708 TAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAAT
390 TAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAAT
2170748 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAA
1 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAA
*
2170813 GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
66 GTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
2170878 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
131 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
2170943 AATTAAAAATTCTAAATA-TATTTTTATAAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
196 AATTAAAAATTCTAAATATTA-TTTTAT-AAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
2171007 TG-AATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
259 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATA
*
2171071 AATTCCATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
323 AATTACATAACTTT-AAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
2171136 AGGTAAAAATATGATGTAA-AGGTAGCGCTTATAT-ATGTAAT
387 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAAT
* * *
2171177 AGGTATCGTTTATATAATGTAATAGGTAGTG-GT-TATTGTAAAGTATATAT-ACTTTTTATAAA
1 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCA-TTTTTATAAA
*
2171239 AGTGTCTATACTTTTTTCACTTTGGAAAACATTAATTTAAGGTTATC-TTTGAGTGAGTTTTAAG
65 AGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAG
*
2171303 ATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT-ACGTAACG--ATATATTATTATT
130 ATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATT
*
2171365 AAATTAAAAATTCT-AATATTATTTTATAAAATATCAAAATAATCAAATAATTTTTTGTGCAAAT
195 AAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAAT
*
2171429 GAAATTATTAAATTAATATTGTAGGTTGAAAACATGAAACACTATTAAAAAAATTGAAACATAAA
260 GAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAA
* *
2171494 TTACATAACTTTAAAGAAGTATTGAT-CATTTTATAAAAAGTATGGACACTTTC-A-ATAATAGG
325 TTACATAACTTTAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGG
2171556 T-AAAATATGATGTAATAGGTAGCGCTTATATAATGTAAT
390 TAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAAT
* *
2171595 AGGTAGCGCTTATATAATGTAATAGGTAGTGCTTATATTGT-AAGTATCTATCCTTTTTATAAAA
1 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAA
2171659 GTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
66 GTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
2171724 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
131 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
2171789 AATTAAAAA
196 AATTAAAAA
2171798 CAATAAACAT
Statistics
Matches: 1402, Mismatches: 31, Indels: 72
0.93 0.02 0.05
Matches are distributed among these distances:
414 4 0.00
415 299 0.21
416 19 0.01
417 45 0.03
418 38 0.03
419 102 0.07
420 78 0.06
421 106 0.08
422 76 0.05
423 75 0.05
424 21 0.01
425 11 0.01
426 90 0.06
427 75 0.05
428 8 0.01
429 57 0.04
430 20 0.01
431 276 0.20
432 2 0.00
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.40
Consensus pattern (429 bp):
AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAA
GTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
AATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATG
AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAAT
TACATAACTTTAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGT
AAAAATATGATGTAATAGGTAGCGCTTATATAATGTAAT
Found at i:2171180 original size:22 final size:23
Alignment explanation
Indices: 2171144--2171205 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
2171134 ATAGGTAAAA
*
2171144 ATATGATGTAA-AGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
2171166 ATAT-ATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
2171188 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
2171206 TGGTTATTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 6 0.17
22 17 0.49
23 12 0.34
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:2171212 original size:23 final size:22
Alignment explanation
Indices: 2171144--2171212 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 22
2171134 ATAGGTAAAA
*
2171144 ATATGATGTAA-AGGTAGCGCTT
1 ATAT-ATGTAATAGGTAGTGCTT
*
2171166 ATATATGTAATAGGTA-TCGTTT
1 ATATATGTAATAGGTAGT-GCTT
*
2171188 ATATAATGTAATAGGTAGTGGTT
1 ATAT-ATGTAATAGGTAGTGCTT
2171211 AT
1 AT
2171213 TGTAAAGTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 6 0.15
22 16 0.40
23 17 0.43
24 1 0.03
ACGTcount: A:0.33, C:0.04, G:0.23, T:0.39
Consensus pattern (22 bp):
ATATATGTAATAGGTAGTGCTT
Found at i:2171586 original size:23 final size:23
Alignment explanation
Indices: 2171560--2171632 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
2171550 AATAGGTAAA
*
2171560 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
2171583 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
2171606 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
2171629 ATAT
1 ATAT
2171633 TGTAAGTATC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:2171642 original size:846 final size:845
Alignment explanation
Indices: 2169902--2171797 Score: 3363
Period size: 846 Copynumber: 2.2 Consensus size: 845
2169892 AAATTTAAAA
*
2169902 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTATAAAGTATCTATCCTTTTTATAAAA
1 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAA
*
2169967 GTGTCCATACTTTTTTCACTGTGGAGAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
66 GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
2170032 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
131 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
2170097 AATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATG
196 AATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATG
*
2170162 AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAACATTGAAACATAAA
261 AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAA
2170227 TTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAATAG
326 TTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAATAG
2170292 GTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATA
391 GTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATA
* * *
2170357 GGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGG
456 GGTAGTGCGTATATTGTAAAGTATATATACTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGG
2170422 AAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGT
521 AAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGT
*
2170487 CTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAATATTT
586 CTAATGATTTATTTTTTACGTAACGA-ATATATTATTATTAAATTAAAAATTCTAAATAATATTT
2170552 TATATCAAAACAATCAAATAATTTTTTGTGCAAAAATGATTAAATTATATTGTAGGTGGAAAACA
650 TATATCAAAACAATCAAATAATTTTTTGTGCAAAAATGATTAAATTATATTGTAGGTGGAAAACA
2170617 TGAAATATTAAAAAAATGAAACATAAATTACATAACTTAAAGAAGTATCGATCATTTTTATAAAA
715 TGAAATATTAAAAAAATGAAACATAAATTACATAACTTAAAGAAGTATCGATCATTTTTATAAAA
2170682 AGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAA
780 AGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAA
2170747 T
845 T
*
2170748 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAA
1 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAA
2170813 GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
66 GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
2170878 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
131 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
2170943 AATTAAAAATTCTAAATA-TATTTTTATAAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
196 AATTAAAAATTCTAAATATTA-TTTTAT-AAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
2171007 TG-AATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
259 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
* *
2171071 AATTCCATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
324 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAAT
*
2171136 AGGTAAAAATATGATGTAA-AGGTAGCGCTTATAT-ATGTAATAGGTATCGTTTATATAATGTAA
389 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAA
*
2171199 TAGGTAGTG-GT-TATTGTAAAGTATATATACTTTTTATAAAAGTGTCTATACTTTTTTCACTTT
454 TAGGTAGTGCGTATATTGTAAAGTATATATACTTTTTATAAAAGTGTCTATACTTTTTTCACTGT
2171262 GGAAAACATTAATTTAAGGTTATC-TTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
519 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
*
2171326 GTCTAATGATTTA-TTTTTACGTAACG-ATATATTATTATTAAATTAAAAATTCT-AATATTATT
584 GTCTAATGATTTATTTTTTACGTAACGAATATATTATTATTAAATTAAAAATTCTAAATAATA-T
* *
2171388 TTATAAAATATCAAAATAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAG
648 TT-T---ATATCAAAACAATCAAATAATTTTTTGTGC-AA--AAATGATTAAATT-ATATTGTAG
* *
2171453 GTTGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAGAAGTATTG
705 GTGGAAAACATG-AA-A-TATTAAAAAAA-TGAAACATAAATTACATAAC-TTAAAGAAGTATCG
2171518 ATCA-TTTTATAAAAAGTATGGACACTTTC-A-ATAATAGGT-AAAATATGATGTAATAGGTAGC
765 ATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
2171579 GCTTATATAATGTAAT
830 GCTTATATAATGTAAT
*
2171595 AGGTAGCGCTTATATAATGTAATAGGTAGTGCTTATATTGT-AAGTATCTATCCTTTTTATAAAA
1 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAA
*
2171659 GTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
66 GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
2171724 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
131 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
2171789 AATTAAAAA
196 AATTAAAAA
2171798 CAATAAACAT
Statistics
Matches: 1014, Mismatches: 20, Indels: 32
0.95 0.02 0.03
Matches are distributed among these distances:
837 6 0.01
838 30 0.03
839 1 0.00
840 12 0.01
841 53 0.05
842 102 0.10
843 3 0.00
844 37 0.04
845 29 0.03
846 539 0.53
847 118 0.12
848 10 0.01
849 12 0.01
850 45 0.04
851 17 0.02
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.40
Consensus pattern (845 bp):
AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAA
GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTA
AATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATG
AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAA
TTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAATAG
GTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATA
GGTAGTGCGTATATTGTAAAGTATATATACTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGG
AAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGT
CTAATGATTTATTTTTTACGTAACGAATATATTATTATTAAATTAAAAATTCTAAATAATATTTT
ATATCAAAACAATCAAATAATTTTTTGTGCAAAAATGATTAAATTATATTGTAGGTGGAAAACAT
GAAATATTAAAAAAATGAAACATAAATTACATAACTTAAAGAAGTATCGATCATTTTTATAAAAA
GTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAAT
Found at i:2172076 original size:23 final size:23
Alignment explanation
Indices: 2172045--2172117 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
2172035 ATAGGTAAAA
*
2172045 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
2172068 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
2172091 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
2172114 ATAT
1 ATAT
2172118 TGTAAAGTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:2172255 original size:486 final size:488
Alignment explanation
Indices: 2171358--2172995 Score: 2926
Period size: 486 Copynumber: 3.4 Consensus size: 488
2171348 AACGATATAT
* *
2171358 TATTATTAAATTAAAAATTCTAATATTATTTTATAAAATATCAAAATAATCAAATAATTTTTTGT
1 TATTATTAAATT-TAAATTCTAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGT
*
2171423 GCAAATGAAATTATTAAATTAATATTGTAGGTTGAAAACATGAAACACTATTAAAAAAATTGAAA
65 GCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAA
*
2171488 CATAAATTACATAACTTT-AAAGAAGTATTGATCA-TTTTATAAAAAGTATGGACACTTTC-A-A
130 CATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATA
2171549 TAATAGGT-AAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAAT
195 TAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAAT
2171613 GTAATAGGTAGTGCTTATATTGT-AAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCA
260 GTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCA
2171677 CTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
325 CTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
2171742 AGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTAAATTAAAAACAATAAACA
390 AGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTAAATTAAAAACAATAAACA
2171807 TATATATTACATATTTATTATTATCTTTGGCTAA
455 TATATATTACATATTTATTATTATCTTTGGCTAA
2171841 TATTATTAAATTTAAATTCTAAATATTA-TTTATAAAATATCAAAACAATCAAATAATTTTTTGT
1 TATTATTAAATTTAAATTCT-AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGT
2171905 GCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAATTGAAA
65 GCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAA
2171969 CATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTAT-AAAAGTATGGACACTTTCAATA
130 CATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATA
2172033 TAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAAT
195 TAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAAT
2172098 GTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCA
260 GTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCA
*
2172163 CAGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
325 CTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
2172228 AGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTAAATTAAAAACAATAAACA
390 AGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTAAATTAAAAACAATAAACA
2172293 TATATATTACATATTTATTATTATCTTTGGCTAA
455 TATATATTACATATTTATTATTATCTTTGGCTAA
2172327 TATTATT-AATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGT
1 TATTATTAAATTTAAATTCT-AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGT
2172391 GCAAATGAAATTATT-AATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAA
65 GCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAA
*
2172455 CATAAATTACATAACTTTAAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
130 CATAAATTACATAACTTT-AAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAAT
* * *
2172520 ATAATAGGTAAAAATATGATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGTTTATATAA
194 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAA
*
2172585 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATAC-TTTTTC
259 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTC
*
2172649 ACTGT-GAAAATATTAATTTAAGGTTATC-TTTGAGTGAG-TTTAAGATATTAATTTAGTAATTA
324 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
2172711 TAGGCGTCTAATGATTTATTTTTCACGTTACG--ATATATTATTATTAAATTAAAAACAATAAAC
389 TAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTAAATTAAAAACAATAAAC
* *
2172774 ATATATATTACAAATTTATTA-T-TCTTTGGTTAA
454 ATATATATTACATATTTATTATTATCTTTGGCTAA
*
2172807 TATTGTTAAATTTAAA-T-TAATATTA-TTTATAAAATATCAAAACAATCAAATAA-TTTTTGTG
1 TATTATTAAATTTAAATTCTAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTG
2172868 CAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAA
66 CAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAA
* *
2172933 CATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
130 CATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAA
2172996 CATATTATAA
Statistics
Matches: 1125, Mismatches: 16, Indels: 34
0.96 0.01 0.03
Matches are distributed among these distances:
476 22 0.02
477 108 0.10
478 38 0.03
479 1 0.00
480 17 0.02
481 39 0.03
482 177 0.16
483 26 0.02
484 65 0.06
485 145 0.13
486 314 0.28
487 33 0.03
488 140 0.12
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.39
Consensus pattern (488 bp):
TATTATTAAATTTAAATTCTAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTG
CAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAAC
ATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATAT
AATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAATG
TAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCAC
TGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATA
GGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTAAATTAAAAACAATAAACAT
ATATATTACATATTTATTATTATCTTTGGCTAA
Found at i:2172564 original size:23 final size:23
Alignment explanation
Indices: 2172533--2172605 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
2172523 ATAGGTAAAA
* *
2172533 ATATGATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGTGTTT
2172556 ATATAATGTAATAGGTAGTGTTT
1 ATATAATGTAATAGGTAGTGTTT
*
2172579 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGTTT
2172602 ATAT
1 ATAT
2172606 TGTAAAGTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGTTT
Found at i:2175233 original size:20 final size:20
Alignment explanation
Indices: 2175205--2175250 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
2175195 ATAAAAAATG
*
2175205 AGTACCGATACTGCTACAGT
1 AGTATCGATACTGCTACAGT
*
2175225 AGTATCGATACTGCTATAGT
1 AGTATCGATACTGCTACAGT
*
2175245 AATATC
1 AGTATC
2175251 AAGCCCAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (20 bp):
AGTATCGATACTGCTACAGT
Found at i:2177945 original size:20 final size:20
Alignment explanation
Indices: 2177903--2177972 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
2177893 CAAATTTTTT
* * *
2177903 TATGAATAGTA-CTATACTA
1 TATGAATAATACCGATACTG
2177922 TATGAATAATACCGATACTG
1 TATGAATAATACCGATACTG
* *
2177942 TATGAATAGTACCGATATTG
1 TATGAATAATACCGATACTG
* *
2177962 TGTGAACAATA
1 TATGAATAATA
2177973 ATGAACAGTA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
19 10 0.24
20 32 0.76
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (20 bp):
TATGAATAATACCGATACTG
Found at i:2181033 original size:23 final size:24
Alignment explanation
Indices: 2181007--2181057 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
2180997 TCTAGATTAA
*
2181007 TGTTG-ACTGGATCTTGTAGAAAC
1 TGTTGCACTGGATCTTCTAGAAAC
*
2181030 TGTTGCTCTCTGGATCTTCTAGAAAC
1 TGTTG--CACTGGATCTTCTAGAAAC
2181056 TG
1 TG
2181058 CCACGTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 5 0.22
26 18 0.78
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.37
Consensus pattern (24 bp):
TGTTGCACTGGATCTTCTAGAAAC
Found at i:2183053 original size:166 final size:168
Alignment explanation
Indices: 2182574--2183079 Score: 559
Period size: 170 Copynumber: 3.0 Consensus size: 168
2182564 AAATTGAGTG
* ** * * * * *
2182574 GAATATGGAGAGAATCTCTATAAAAAATGTGAAGGCACTTTTTACAATAAGCATTTTCACCTTTT
1 GAATATGCAGAGAATCTCTATAAAAAA-AAGAAGTCTC-TTTCACAAGAAGCA-TTTCACCTTAT
* *
2182639 GTAAGGAATCTCTACCATGTCATAGTGTCTCATCCCATCAAGCATGGGAGTTGTTGGGATGAATA
63 GTAAGGAATCTCTACCATGTCATAGTGTCTCATCCCATCAAACATGAGAGTTGTTGGGATGAATA
* * *
2182704 GTTTATCAAAAGGGAACATTATATATACAAATATGTTTCTA
128 GTTCATCGAAGGGGAACATTATATATACAAATATGTTTCTA
* * * ** *
2182745 GAATATGTAGAGAATCTCTATAAAAAAAAGAAGGTTTTTTTCACAAGAAGTTTTTTCATCTTATG
1 GAATATGCAGAGAATCTCTATAAAAAAAAGAA-GTCTCTTTCACAAGAAG-CATTTCACCTTATG
* * * * * * *
2182810 CAATGAATCTTTTCCATTTCATAGTGTCTCGTCCCATCAGACATGAGAGTTGTTGGGATGAATAG
64 TAAGGAATCTCTACCATGTCATAGTGTCTCATCCCATCAAACATGAGAGTTGTTGGGATGAATAG
* *
2182875 TTCATTGAAGGGGAACATTATAT-TACAAATATGTTTCTG
129 TTCATCGAAGGGGAACATTATATATACAAATATGTTTCTA
* * * *
2182914 GAATATGCAGAGTATCTCTA-CAAAAATAGAA-TACTCTTTCATAAGAAGCATTTCACCTTATGT
1 GAATATGCAGAGAATCTCTATAAAAAAAAGAAGT-CTCTTTCACAAGAAGCATTTCACCTTATGT
* * * *
2182977 AGGGAATCTCTACCATGTCATAGTGTCTCATCCTATCAAATATGAGAGTTGTTGGGATGAATCGT
65 AAGGAATCTCTACCATGTCATAGTGTCTCATCCCATCAAACATGAGAGTTGTTGGGATGAATAGT
** * * * *
2183042 TCCCCGAAGGGGAACATTATGTGTGCATATATGTTTCT
130 TCATCGAAGGGGAACATTATATATACAAATATGTTTCT
2183080 TTTATTCATT
Statistics
Matches: 277, Mismatches: 54, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
166 85 0.31
167 25 0.09
168 9 0.03
169 33 0.12
170 98 0.35
171 27 0.10
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (168 bp):
GAATATGCAGAGAATCTCTATAAAAAAAAGAAGTCTCTTTCACAAGAAGCATTTCACCTTATGTA
AGGAATCTCTACCATGTCATAGTGTCTCATCCCATCAAACATGAGAGTTGTTGGGATGAATAGTT
CATCGAAGGGGAACATTATATATACAAATATGTTTCTA
Found at i:2185911 original size:16 final size:17
Alignment explanation
Indices: 2185892--2185929 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
2185882 TTTAATTATA
2185892 TTTTTATGATATTGT-T
1 TTTTTATGATATTGTAT
* *
2185908 TTTTTATGTTGTTGTAT
1 TTTTTATGATATTGTAT
2185925 TTTTT
1 TTTTT
2185930 GATCTTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.74
Consensus pattern (17 bp):
TTTTTATGATATTGTAT
Found at i:2185956 original size:30 final size:32
Alignment explanation
Indices: 2185879--2185957 Score: 81
Period size: 30 Copynumber: 2.5 Consensus size: 32
2185869 TGGATCATAA
* *
2185879 TTATTTAATTATATTTTTATGATATTGTTTTT
1 TTATGTAATTATATTTTTATGATATTGTTGTT
** * *
2185911 TTATGTTGTTGTATTTTT-TGATCTT-TTGTT
1 TTATGTAATTATATTTTTATGATATTGTTGTT
*
2185941 TTATGTAATTTTATTTT
1 TTATGTAATTATATTTT
2185958 GTATTTTATC
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
30 18 0.47
31 6 0.16
32 14 0.37
ACGTcount: A:0.19, C:0.01, G:0.10, T:0.70
Consensus pattern (32 bp):
TTATGTAATTATATTTTTATGATATTGTTGTT
Found at i:2186055 original size:30 final size:30
Alignment explanation
Indices: 2186021--2186077 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
2186011 TCTTTTTATA
* *
2186021 ATATTGTTATATATTGAAATATCTAAACTT
1 ATATTGTTATAAATTAAAATATCTAAACTT
*
2186051 ATATTGTTCTAAATTAAAATATCTAAA
1 ATATTGTTATAAATTAAAATATCTAAA
2186078 TTTACTATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (30 bp):
ATATTGTTATAAATTAAAATATCTAAACTT
Found at i:2186841 original size:44 final size:44
Alignment explanation
Indices: 2186793--2186876 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
2186783 TGTAAGCAAA
**
2186793 CTTCACAAACTTGTATTTGTTAAAATATATATTCTCTTTGTAAG
1 CTTCACAAACTTACATTTGTTAAAATATATATTCTCTTTGTAAG
**
2186837 CTTCACAAGTTTACATTTGTTAAAATATATATTCTCTTTG
1 CTTCACAAACTTACATTTGTTAAAATATATATTCTCTTTG
2186877 CTTTTGTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.46
Consensus pattern (44 bp):
CTTCACAAACTTACATTTGTTAAAATATATATTCTCTTTGTAAG
Found at i:2187660 original size:8 final size:9
Alignment explanation
Indices: 2187639--2187663 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
2187629 TATAATAACA
2187639 AAAAATATG
1 AAAAATATG
2187648 AAAAATATG
1 AAAAATATG
2187657 AAAAATA
1 AAAAATA
2187664 AGGTTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (9 bp):
AAAAATATG
Found at i:2190544 original size:18 final size:19
Alignment explanation
Indices: 2190515--2190550 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
2190505 AATTTCTAGT
2190515 TTTTATGTTTAATATTATG
1 TTTTATGTTTAATATTATG
2190534 TTTTA-GTTTAATATTAT
1 TTTTATGTTTAATATTAT
2190551 ATATTTCTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (19 bp):
TTTTATGTTTAATATTATG
Found at i:2191319 original size:108 final size:109
Alignment explanation
Indices: 2191190--2191836 Score: 400
Period size: 108 Copynumber: 5.8 Consensus size: 109
2191180 TAGGTAGCAC
* *
2191190 ATTTTAAAGCTGATGGGGCCTTAGAAATCGAACGATAACAAAATAGGTTAATTATTTAATTTGTT
1 ATTTTAAAGCTGATGGAGCCTTAGAAATCG-ACGATAACAAAATAGGTTAATTACTTAATTTGTT
*
2191255 ATC-ATTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAA
65 ATCAAGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAA
* * * ** * ***
2191299 ATTTT-AAGCTGATGGAGCCTTAGGAATCCGACAATAACATAACCGGTTAATTACTGGAA-ACAT
1 ATTTTAAAGCTGATGGAGCCTTAGAAAT-CGACGATAACAAAATAGGTTAATTACT-TAATTTGT
** * * * * * * *
2191362 TATCAAACATAAT-AACACATTAAGTAGCGCTTATGTAACATAATAGGTAGCGC-C
64 TATCAAGTATTATCAACATATTAGGTAACGC----CT-A-A-AAT-GTTA-C-CAA
* * * * * * * * * *
2191416 TTTTTCAAGATGAAGGGGCTTTGGAAATCCGACAATAACAAAATAAGTTCATTACTTAATTTGTT
1 ATTTTAAAGCTGATGGAGCCTTAGAAAT-CGACGATAACAAAATAGGTTAATTACTTAATTTGTT
* *
2191481 AT-TAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCAA
65 ATCAAGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAA
* * * * ** * ***
2191525 AGTTT-AATCTGATGGAGTCTTAGAAATTCGACGATAACATAACCGGTTAATTACTGGAA-ACAT
1 ATTTTAAAGCTGATGGAGCCTTAGAAA-TCGACGATAACAAAATAGGTTAATTACT-TAATTTGT
* * * * * * *
2191588 TATCAAGCATAAT-AACATATTAGGTAGCGGTCATGTAATGTAATAGGTAGCAC
64 TATCAAGTATTATCAACATATTAGGTAAC-G-C--CTAA---AAT-GTTACCAA
* *
2191641 ATTATTAAAGCTGATGGGGCCTTAGAAATCTGACGATAACAAAATAAGTTAATTACTTAATTTGT
1 ATT-TTAAAGCTGATGGAGCCTTAGAAATC-GACGATAACAAAATAGGTTAATTACTTAATTTGT
* *
2191706 TATC-AGTATTATCAACATATTAGGTAACACCTAAAATGTTAACAA
64 TATCAAGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAA
* * * * * * * *
2191751 AGTTT-AATCTGATTGAGCCTTAGAAATTCGACGATAATATAATTGATTAATTACTTGATTTGTT
1 ATTTTAAAGCTGATGGAGCCTTAGAAA-TCGACGATAACAAAATAGGTTAATTACTTAATTTGTT
2191815 ATCAAGCT-TTATCAACATATTA
65 ATCAAG-TATTATCAACATATTA
2191837 CCAGTACATT
Statistics
Matches: 397, Mismatches: 105, Indels: 72
0.69 0.18 0.13
Matches are distributed among these distances:
108 163 0.41
109 47 0.12
110 12 0.03
111 6 0.02
112 5 0.01
113 2 0.01
114 5 0.01
115 6 0.02
116 11 0.03
117 24 0.06
118 116 0.29
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (109 bp):
ATTTTAAAGCTGATGGAGCCTTAGAAATCGACGATAACAAAATAGGTTAATTACTTAATTTGTTA
TCAAGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAA
Found at i:2191821 original size:226 final size:224
Alignment explanation
Indices: 2191104--2191792 Score: 1036
Period size: 226 Copynumber: 3.1 Consensus size: 224
2191094 AAAAATGTTA
* * *
2191104 ACGATAACATAACCGATTAATTATTGGAAACATTATCAAGCATAATAATATATTAGGTAGCGCTT
1 ACGATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGCTT
2191169 ATGTAACGTAATAGGTAGCACATTTTAAAGCTGATGGGGCCTTAGAAATCGAACGATAACAAAAT
66 ATGTAACGTAATAGGTAGCACATTTTAAAGCTGATGGGGCCTTAGAAATCG-ACGATAACAAAAT
* * * *
2191234 AGGTTAATTATTTAATTTGTTATCATTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAA
130 AAGTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCAA
* * * *
2191299 ATTTTAAGCTGATGGAGCCTTAGGAATCCG
195 AGTTTAATCTGATGGAGCCTTAGAAATTCG
* * * *
2191329 ACAATAACATAACCGGTTAATTACTGGAAACATTATCAAACATAATAACACATTAAGTAGCGCTT
1 ACGATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGCTT
* * * * * * * * *
2191394 ATGTAACATAATAGGTAGCGCCTTTTTCAAGATGAAGGGGCTTTGGAAATCCGACAATAACAAAA
66 ATGTAACGTAATAGGTAGC-ACATTTTAAAGCTGATGGGGCCTTAGAAAT-CGACGATAACAAAA
* *
2191459 TAAGTTCATTACTTAATTTGTTATTAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCA
129 TAAGTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCA
*
2191524 AAGTTTAATCTGATGGAGTCTTAGAAATTCG
194 AAGTTTAATCTGATGGAGCCTTAGAAATTCG
* *
2191555 ACGATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGGTC
1 ACGATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGCTT
*
2191620 ATGTAATGTAATAGGTAGCACATTATTAAAGCTGATGGGGCCTTAGAAATCTGACGATAACAAAA
66 ATGTAACGTAATAGGTAGCACATT-TTAAAGCTGATGGGGCCTTAGAAATC-GACGATAACAAAA
*
2191685 TAAGTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTAACA
129 TAAGTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCA
*
2191750 AAGTTTAATCTGATTGAGCCTTAGAAATTCG
194 AAGTTTAATCTGATGGAGCCTTAGAAATTCG
*
2191781 ACGATAATATAA
1 ACGATAACATAA
2191793 TTGATTAATT
Statistics
Matches: 411, Mismatches: 49, Indels: 7
0.88 0.10 0.01
Matches are distributed among these distances:
225 80 0.19
226 329 0.80
227 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (224 bp):
ACGATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGCTT
ATGTAACGTAATAGGTAGCACATTTTAAAGCTGATGGGGCCTTAGAAATCGACGATAACAAAATA
AGTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCAAA
GTTTAATCTGATGGAGCCTTAGAAATTCG
Found at i:2196181 original size:15 final size:15
Alignment explanation
Indices: 2196161--2196194 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
2196151 AATTTTATCT
2196161 TTCAATAAATTCGAA
1 TTCAATAAATTCGAA
*
2196176 TTCAATAAATTTGAA
1 TTCAATAAATTCGAA
2196191 TTCA
1 TTCA
2196195 CTTAAACCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (15 bp):
TTCAATAAATTCGAA
Found at i:2201579 original size:23 final size:23
Alignment explanation
Indices: 2201544--2201591 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
2201534 ATCAAGTACA
* *
2201544 ATAATATATTAGGTAATGTTTAT
1 ATAATATAATAGGTAACGTTTAT
* *
2201567 ATAATGTAATAGGTAGCGTTTAT
1 ATAATATAATAGGTAACGTTTAT
2201590 AT
1 AT
2201592 TGACCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.44
Consensus pattern (23 bp):
ATAATATAATAGGTAACGTTTAT
Found at i:2202332 original size:183 final size:182
Alignment explanation
Indices: 2202025--2202477 Score: 712
Period size: 183 Copynumber: 2.5 Consensus size: 182
2202015 TTTTTACTAT
* * *
2202025 CGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATAC
1 CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATCTTTACCTGTTATATTGTTATGGATCGATAC
* * *
2202090 ATTTTTATAAAGTATCGACATTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAGTGT
66 ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGT
** *
2202155 CAATACTTATAATAAAGTATCGACACTT-TCAACATATCCGGTAGTTCTTTAC
131 CAATACTTATAATAAAGTATCGACA-TTATCAACATATCCGGTAGCGCTATAC
* *
2202207 CGGTTTTGTCATTTCGAGATCGGTTTTGTCATATCTTTACCAGTTATATTGTTATGGATCGAATA
1 CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATCTTTACCTGTTATATTGTTATGGATCG-ATA
*
2202272 TATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTG
65 CATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTG
*
2202337 TCGATACTTATAATAAAGTATCGACATTATCAACATATCCGGTAGCGCTATAC
130 TCAATACTTATAATAAAGTATCGACATTATCAACATATCCGGTAGCGCTATAC
* ** * *
2202390 CTGTTTTGTCATTTATAGACCGGTTTGGTCAT-TGTTTACCTGTTATATTGTTATGGATCGATAC
1 CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATCTTTACCTGTTATATTGTTATGGATCGATAC
2202454 ATTTTTATAAAGTATCGACACTTT
66 ATTTTTATAAAGTATCGACACTTT
2202478 CAATATTTTC
Statistics
Matches: 248, Mismatches: 21, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
181 27 0.11
182 84 0.34
183 137 0.55
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.42
Consensus pattern (182 bp):
CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATCTTTACCTGTTATATTGTTATGGATCGATAC
ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGT
CAATACTTATAATAAAGTATCGACATTATCAACATATCCGGTAGCGCTATAC
Found at i:2202584 original size:113 final size:111
Alignment explanation
Indices: 2202349--2202590 Score: 387
Period size: 111 Copynumber: 2.2 Consensus size: 111
2202339 GATACTTATA
*
2202349 ATAAAGTATCGACA-TTATCAACATATCCGGTAGCGCTATACCTGTTTTGTCATTTATAGACCGG
1 ATAAAGTATCGACACTT-TCAACATATCCGGTAGCGCTATACCTGTTTTGTCATTTATAGACCAG
2202413 TTTGGTCATTGTTTACCTGTTATATTGTTATGGATCGATACATTTTT
65 TTTGGTCATTGTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* * * *
2202460 ATAAAGTATCGACACTTTCAATATTTTCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCAGT
1 ATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTATACCTGTTTTGTCATTTATAGACCAGT
* *
2202525 TTTGTCATTTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
66 TTGGTCA--TTGTTTACCTGTTATATTGTTATGGATCGATACATTTTT
2202573 ATAAAGTATCGACACTTT
1 ATAAAGTATCGACACTTT
2202591 ATTGGCGCTA
Statistics
Matches: 121, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
111 63 0.52
112 2 0.02
113 56 0.46
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.44
Consensus pattern (111 bp):
ATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTATACCTGTTTTGTCATTTATAGACCAGT
TTGGTCATTGTTTACCTGTTATATTGTTATGGATCGATACATTTTT
Found at i:2202695 original size:294 final size:295
Alignment explanation
Indices: 2202166--2202772 Score: 914
Period size: 294 Copynumber: 2.1 Consensus size: 295
2202156 AATACTTATA
** * * *
2202166 ATAAAGTATCGACACTTTCAACATATCCGGTAGTTCTTTACCGGTTTTGTCATTTCGAGATCGGT
1 ATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCAGT
*
2202231 TTTGTCATATCTTTACCAGTTATATTGTTATGGATCGAATATATTTTTATAAAGTATCGACACTT
66 TTTGTCATATCTTTACCAGTTATATTGTTATGGATCGAATACATTTTTATAAAGTATCGACACTT
*
2202296 TATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAGTATCGA
131 TATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAGTATCAA
* * *
2202361 CATTATCAACATATCCGGTAGCGCTATACCTGTTTTGTCATTTATAGACCGGTTTGGTCAT-TGT
196 CATTATCAACATATACGGTAGCGCTATACCTGTTTTGTCATTTAGAGACCGGTTTGGCCATATGT
2202425 TTACCTGTTATATTGTTATGGATCGATACATTTTT
261 TTACCTGTTATATTGTTATGGATCGATACATTTTT
* * * * *
2202460 ATAAAGTATCGACACTTTCAATATTTTCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCAGT
1 ATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCAGT
* * *
2202525 TTTGTCATTTTTTTTACCTGTTATATTGTTATGGATCG-ATACATTTTTATAAAGTATCGACACT
66 TTTGTCA-TATCTTTACCAGTTATATTGTTATGGATCGAATACATTTTTATAAAGTATCGACACT
* * *
2202589 TTATTGGCGCTATAACTTCTTTTCTTTTAAATTTCAAAAGTGTCGATACTTATAATAAAGTATCA
130 TTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAGTATCA
* * * * * *
2202654 ACATTTTCAACATATATGGTAGCTCTTTACC-GATTTTGTCATTTCGAGACCGGTTTTGCCATAT
195 ACATTATCAACATATACGGTAGCGCTATACCTG-TTTTGTCATTTAGAGACCGGTTTGGCCATAT
* *
2202718 TTTTATCTGTTATATTGTTATGGATCGATACATTTTT
259 GTTTACCTGTTATATTGTTATGGATCGATACATTTTT
2202755 ATAAAGTATCGACACTTT
1 ATAAAGTATCGACACTTT
2202773 ATCAGCGCTA
Statistics
Matches: 281, Mismatches: 29, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
293 1 0.00
294 199 0.71
295 81 0.29
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (295 bp):
ATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCAGT
TTTGTCATATCTTTACCAGTTATATTGTTATGGATCGAATACATTTTTATAAAGTATCGACACTT
TATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAGTATCAA
CATTATCAACATATACGGTAGCGCTATACCTGTTTTGTCATTTAGAGACCGGTTTGGCCATATGT
TTACCTGTTATATTGTTATGGATCGATACATTTTT
Found at i:2202768 original size:182 final size:181
Alignment explanation
Indices: 2202460--2202951 Score: 738
Period size: 182 Copynumber: 2.7 Consensus size: 181
2202450 ATACATTTTT
* * *
2202460 ATAAAGTATCGACACTTTCAATAT-TTTCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCAG
1 ATAAAGTATCGACACTTTCAACATATAT-GGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGG
2202524 TTTTGTCATTTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
65 TTTTGTCA-TTTTTTTA-CTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
** *
2202589 TTATTGGCGCTATAACTTCTTTTCTTTTAAATT-TCAAAAGTGTCGATACTTATA
128 TTATCAGCGCTATAACTTCTTCTCTTTTAAATTCT-AAAAGTGTCGATACTTATA
* * * **
2202643 ATAAAGTATCAACATTTTCAACATATATGGTAGCTCTTTACC-GATTTTGTCATTTCGAGACCGG
1 ATAAAGTATCGACACTTTCAACATATATGGTAGCGCTTTACCTG-TTTTGTCATTTATAGACCGG
* *
2202707 TTTTGCCATATTTTTATCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTT
65 TTTTGTCATTTTTTTA-CTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTT
2202772 TATCAGCGCTATAACTTCTTCTCTTTTAAATTCTAAAAGTGTCGATACTTATA
129 TATCAGCGCTATAACTTCTTCTCTTTTAAATTCTAAAAGTGTCGATACTTATA
* * *
2202825 ATAAAGTATCGACACTATCAACATATCTGATAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAACATATATGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* *
2202890 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCAATATATTTTTATAAAGTATCGACAC
66 TTTGTCATTTTTTTAC-TGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACAC
2202952 AAACCGACAA
Statistics
Matches: 278, Mismatches: 26, Indels: 11
0.88 0.08 0.03
Matches are distributed among these distances:
181 1 0.00
182 215 0.77
183 60 0.22
184 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (181 bp):
ATAAAGTATCGACACTTTCAACATATATGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTA
TCAGCGCTATAACTTCTTCTCTTTTAAATTCTAAAAGTGTCGATACTTATA
Found at i:2202920 original size:477 final size:476
Alignment explanation
Indices: 2202027--2202951 Score: 1539
Period size: 477 Copynumber: 1.9 Consensus size: 476
2202017 TTTACTATCG
*
2202027 GTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACAT
1 GTTTTGTCATTTAGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACAT
*
2202092 TTTTATAAAGTATCGACATTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAGTGTCA
66 TTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAGTGTCA
* * * *
2202157 ATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGTTCTTTACCGGTTTTGTCATTTC
131 ATACTTATAATAAAGTATCAACACTTTCAACATATACGGTAGCTCTTTACCGATTTTGTCATTTC
* * *
2202222 GAGATCGGTTTTGTCATATCTTTACCAGTTATATTGTTATGGATCGAATATATTTTTATAAAGTA
196 GAGACCGGTTTTGCCATATCTTTACCAGTTATATTGTTATGGATCGAATACATTTTTATAAAGTA
*
2202287 TCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATA
261 TCGACACTTTATCAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATA
* *
2202352 AAGTATCGACATTATCAACATATCCGGTAGCGCTATACCTGTTTTGTCATTTATAGACCGGTTTG
326 AAGTATCGACACTATCAACATATCCGATAGCGCTATACCTGTTTTGTCATTTATAGACCGGTTTG
* *
2202417 GTCATTGTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTCAAT
391 GTCATTGTTTACATGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCGACACTTTCAAT
2202482 ATTTTCGGTAGCGCTTTACCT
456 ATTTTCGGTAGCGCTTTACCT
* * *
2202503 GTTTTGTCATTTATAGACC-AGTTTTGTCATTTTTTTTACCTGTTATATTGTTATGGATCGATAC
1 GTTTTGTCATTTAGAGACCGA-TTTTATCA-TATTTTTACCTGTTATATTGTTATGGATCGATAC
*
2202567 ATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTTCAAAAGTGT
64 ATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAGTGT
* * *
2202632 CGATACTTATAATAAAGTATCAACATTTTCAACATATATGGTAGCTCTTTACCGATTTTGTCATT
129 CAATACTTATAATAAAGTATCAACACTTTCAACATATACGGTAGCTCTTTACCGATTTTGTCATT
* * *
2202697 TCGAGACCGGTTTTGCCATATTTTTATCTGTTATATTGTTATGGATCG-ATACATTTTTATAAAG
194 TCGAGACCGGTTTTGCCATATCTTTACCAGTTATATTGTTATGGATCGAATACATTTTTATAAAG
*
2202761 TATCGACACTTTATCAGCGCTATAACTTCTTCTCTTTTAAATTCTAAAAGTGTCGATACTTATAA
259 TATCGACACTTTATCAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAA
* *
2202826 TAAAGTATCGACACTATCAACATATCTGATAGCGCTTTACCTGTTTTGTCATTTATAGACCGGTT
324 TAAAGTATCGACACTATCAACATATCCGATAGCGCTATACCTGTTTTGTCATTTATAGACCGGTT
* * *
2202891 TTGTCATTTTTTTACATGTTATATTGTTATGGATCAATATATTTTTATAAAGTATCGACAC
389 TGGTCA-TTGTTTACATGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCGACAC
2202952 AAACCGACAA
Statistics
Matches: 416, Mismatches: 30, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
475 1 0.00
476 168 0.40
477 247 0.59
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (476 bp):
GTTTTGTCATTTAGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACAT
TTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAGTGTCA
ATACTTATAATAAAGTATCAACACTTTCAACATATACGGTAGCTCTTTACCGATTTTGTCATTTC
GAGACCGGTTTTGCCATATCTTTACCAGTTATATTGTTATGGATCGAATACATTTTTATAAAGTA
TCGACACTTTATCAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATA
AAGTATCGACACTATCAACATATCCGATAGCGCTATACCTGTTTTGTCATTTATAGACCGGTTTG
GTCATTGTTTACATGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCGACACTTTCAAT
ATTTTCGGTAGCGCTTTACCT
Found at i:2203764 original size:2 final size:2
Alignment explanation
Indices: 2203757--2203858 Score: 78
Period size: 2 Copynumber: 51.0 Consensus size: 2
2203747 AAATTATATT
* *
2203757 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC AC AC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * * * * * * * *
2203799 AC AC AC AC CC TC TC TC TC TC TC TC TC AC AC AC AC AC AC AC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
2203841 TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC
2203859 ACACACACAC
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 95 1.00
ACGTcount: A:0.13, C:0.51, G:0.00, T:0.36
Consensus pattern (2 bp):
TC
Found at i:2203812 original size:32 final size:32
Alignment explanation
Indices: 2203776--2203869 Score: 170
Period size: 32 Copynumber: 2.9 Consensus size: 32
2203766 CTCTCTCTCT
2203776 CTCTCTCTCTCTCTCTCTCACACACACACACC
1 CTCTCTCTCTCTCTCTCTCACACACACACACC
* *
2203808 CTCTCTCTCTCTCTCTCACACACACACACACT
1 CTCTCTCTCTCTCTCTCTCACACACACACACC
2203840 CTCTCTCTCTCTCTCTCTCACACACACACA
1 CTCTCTCTCTCTCTCTCTCACACACACACA
2203870 TATATATATA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.20, C:0.51, G:0.00, T:0.29
Consensus pattern (32 bp):
CTCTCTCTCTCTCTCTCTCACACACACACACC
Found at i:2207071 original size:16 final size:16
Alignment explanation
Indices: 2207050--2207082 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2207040 CTATATTAAC
*
2207050 ACGATGATTATTATTA
1 ACGATGAATATTATTA
2207066 ACGATGAATATTATTA
1 ACGATGAATATTATTA
2207082 A
1 A
2207083 TTTAATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (16 bp):
ACGATGAATATTATTA
Found at i:2207564 original size:3 final size:3
Alignment explanation
Indices: 2207556--2207586 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
2207546 ATGAATTAAG
2207556 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2207587 AGAAAAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:2209968 original size:18 final size:20
Alignment explanation
Indices: 2209945--2210013 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
2209935 CCAAAATTTG
2209945 GTATCGATACTCA-ACCA-A
1 GTATCGATACTCACACCAGA
*
2209963 GTATCGATACCCCAGCACCAGA
1 GTATCGATA-CTCA-CACCAGA
*
2209985 GTATCGATACTTAC-CCTAGA
1 GTATCGATACTCACACC-AGA
2210005 GTATCGATA
1 GTATCGATA
2210014 TTGCCTTAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
18 9 0.21
19 5 0.12
20 13 0.30
21 6 0.14
22 10 0.23
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (20 bp):
GTATCGATACTCACACCAGA
Found at i:2212410 original size:12 final size:12
Alignment explanation
Indices: 2212392--2212425 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
2212382 GAGGAGAATA
2212392 AGAAGAAGAAGG
1 AGAAGAAGAAGG
* *
2212404 AGGAGAAGGAGG
1 AGAAGAAGAAGG
2212416 AGAAGAAGAA
1 AGAAGAAGAA
2212426 AGATAATGAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (12 bp):
AGAAGAAGAAGG
Found at i:2212440 original size:21 final size:21
Alignment explanation
Indices: 2212392--2212446 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
2212382 GAGGAGAATA
* *
2212392 AGAAGAAGAAGGAGGAGAAGG
1 AGAAGAAGAAGAAAGAGAAGG
* * *
2212413 AGGAGAAGAAGAAAGATAATG
1 AGAAGAAGAAGAAAGAGAAGG
*
2212434 AGAAGAAGTAGAA
1 AGAAGAAGAAGAA
2212447 GAATGAAAAG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.38, T:0.05
Consensus pattern (21 bp):
AGAAGAAGAAGAAAGAGAAGG
Found at i:2214653 original size:265 final size:267
Alignment explanation
Indices: 2214180--2214816 Score: 814
Period size: 265 Copynumber: 2.4 Consensus size: 267
2214170 GTTTCAGCCA
* * * * * *
2214180 TTTTTGGTGCTCAATAAATGTACAGTTTCATCTACTTTTTAGAGGTCATTCATTGCAACAATAAT
1 TTTTTGGTGCTCAATCAATGCACCGTTTTAGCTACTTTTTAGAGGTCATTCATTGCAGCAATAAT
* * * * * *
2214245 GCACCATTTCATCTTTTTCAGAGCTAATTTAATGCAAAATTCAAGCAACTATATAGAAAATGGGT
66 GCACCATTTCAGCTTTTTCAAAGCTAATTCAATGCAAAATTAAAACAACTATATAGAAAATAGGT
* *
2214310 GAAAATAGTGTTGCATTATCATCTTCTGCAACTTTTCAGTGATATATCAACTCAAATCAGAAACC
131 GAAAATAGTGGTGCATGATCATCTTCTGCAACTTTTCAGTGATATATCAACTCAAATCAGAAACC
* * * *
2214375 TTTTTAGTGTTGAATTTTCACTTCAAATC-A-TGTATTTTAACCAGGCCAAATTTTTCACTATTT
196 TTTCTAGTGTTGAATTATCACTTCAAATCAAGTGTATTTTAACCAGACCAAATTGTTCACTATTT
2214438 CAACTAC
261 CAACTAC
* * * * *
2214445 TTTTTGGTGTTCAATCAATGCACCGTTTTAGCTTCATTTTAGAGGTCATTCATTGTAGCTATAAT
1 TTTTTGGTGCTCAATCAATGCACCGTTTTAGCTACTTTTTAGAGGTCATTCATTGCAGCAATAAT
* * *
2214510 GCACCATTTCAGCTTTTTCAAAGTTCATTCAATGCAGAATTAAAACAACTAT-TCAGAAAATAGG
66 GCACCATTTCAGCTTTTTCAAAGCTAATTCAATGCAAAATTAAAACAACTATAT-AGAAAATAGG
* * * *
2214574 TGAAAATAGTGGTGCATGATCATTTTCTGTAACTTTTTAGTGATTTATCAACTCAAATCAGAAAC
130 TGAAAATAGTGGTGCATGATCATCTTCTGCAACTTTTCAGTGATATATCAACTCAAATCAGAAAC
*
2214639 CTTTCTAGTGTTGAATTATCACTTCAAATCATAAAAAATGTGTATTTTATCCAGACCAAATTGTT
195 CTTTCTAGTGTTGAATTATCACTTCAAATC------AA-GTGTATTTTAACCAGACCAAATTGTT
* *
2214704 CACTGTTTCAGCTAC
253 CACTATTTCAACTAC
** * *
2214719 TTTTCAGTGCTCAATCAATGCATCGTTTTAGCTACTTTTTAGAGGTCATTCATTGCAGCAACAAT
1 TTTTTGGTGCTCAATCAATGCACCGTTTTAGCTACTTTTTAGAGGTCATTCATTGCAGCAATAAT
* * *
2214784 GCACCATTTTAGATTTTT-AGAGCTAATTCAATG
66 GCACCATTTCAGCTTTTTCAAAGCTAATTCAATG
2214817 AAGAAATAAT
Statistics
Matches: 315, Mismatches: 47, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
264 1 0.00
265 194 0.62
272 1 0.00
273 12 0.04
274 107 0.34
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (267 bp):
TTTTTGGTGCTCAATCAATGCACCGTTTTAGCTACTTTTTAGAGGTCATTCATTGCAGCAATAAT
GCACCATTTCAGCTTTTTCAAAGCTAATTCAATGCAAAATTAAAACAACTATATAGAAAATAGGT
GAAAATAGTGGTGCATGATCATCTTCTGCAACTTTTCAGTGATATATCAACTCAAATCAGAAACC
TTTCTAGTGTTGAATTATCACTTCAAATCAAGTGTATTTTAACCAGACCAAATTGTTCACTATTT
CAACTAC
Found at i:2215934 original size:29 final size:29
Alignment explanation
Indices: 2215875--2215935 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
2215865 GTATATCCCA
*
2215875 AAATAATTTTTGAGGTGCCCTATTGGGCC
1 AAATAATTTTTGAGGTGCCCTATTGGACC
2215904 AAATAATTATTTTGA-GTGCCCTATT-GACC
1 AAATAA-T-TTTTGAGGTGCCCTATTGGACC
2215933 AAA
1 AAA
2215936 AAAACCCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 12 0.41
30 11 0.38
31 6 0.21
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (29 bp):
AAATAATTTTTGAGGTGCCCTATTGGACC
Found at i:2217037 original size:20 final size:20
Alignment explanation
Indices: 2217012--2217051 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
2217002 AGGGTTCAAG
2217012 TATCGATACTGGAGGAACAA
1 TATCGATACTGGAGGAACAA
*
2217032 TATCGATACTGGATGAACAA
1 TATCGATACTGGAGGAACAA
2217052 GTATACATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (20 bp):
TATCGATACTGGAGGAACAA
Found at i:2219907 original size:15 final size:15
Alignment explanation
Indices: 2219887--2219917 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
2219877 GAGTTTTACA
2219887 TCATTTTAATACCAC
1 TCATTTTAATACCAC
2219902 TCATTTTAATACCAC
1 TCATTTTAATACCAC
2219917 T
1 T
2219918 GGATGATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (15 bp):
TCATTTTAATACCAC
Found at i:2220247 original size:81 final size:82
Alignment explanation
Indices: 2220097--2220248 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 82
2220087 CCACTTACAT
* * *
2220097 ATAGTGTAAAACTATTAAGATTTACACCTTTCTAGTATCGTTGGATGAGAAAAAATCAAACACTG
1 ATAGTGTAAAACTATTAAGATTTACACCTTTCTAGGATAGTTGGATGAGAAAAAATCAAACACTA
2220162 AGATTATTAGTAATTAC
66 AGATTATTAGTAATTAC
* * * * **
2220179 ATAGTGTAAAACT-TTTAGTTTTACACCTTTTTAGGATATTTGGATGAGGGAAAATCAAA-AGCT
1 ATAGTGTAAAACTATTAAGATTTACACCTTTCTAGGATAGTTGGATGAGAAAAAATCAAACA-CT
2220242 AAGATTA
65 AAGATTA
2220249 ACTCCTTATT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
80 1 0.02
81 46 0.77
82 13 0.22
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (82 bp):
ATAGTGTAAAACTATTAAGATTTACACCTTTCTAGGATAGTTGGATGAGAAAAAATCAAACACTA
AGATTATTAGTAATTAC
Found at i:2220813 original size:28 final size:28
Alignment explanation
Indices: 2220782--2220898 Score: 85
Period size: 28 Copynumber: 4.2 Consensus size: 28
2220772 TACGATCTAG
* *
2220782 GGTTTAAGATTTAAGTTTTAAGTTTTAT
1 GGTTTAAGATTTAAGGTTTAAGATTTAT
* * ** *
2220810 GGTTTATGACTTGGGGTTTATGATTTAT
1 GGTTTAAGATTTAAGGTTTAAGATTTAT
* *
2220838 GGTTTAAGATTTAGGGTTT-AGATAT-T
1 GGTTTAAGATTTAAGGTTTAAGATTTAT
* * * *
2220864 GATGTAAGATTTTAGGGTTTAAGGTTTCAT
1 GGTTTAAGA-TTTAAGGTTTAAGATTT-AT
2220894 GGTTT
1 GGTTT
2220899 GGGGTTTGGG
Statistics
Matches: 67, Mismatches: 18, Indels: 6
0.74 0.20 0.07
Matches are distributed among these distances:
26 8 0.12
27 14 0.21
28 41 0.61
30 4 0.06
ACGTcount: A:0.24, C:0.02, G:0.26, T:0.49
Consensus pattern (28 bp):
GGTTTAAGATTTAAGGTTTAAGATTTAT
Done.