Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008942.1 Hibiscus syriacus cultivar Beakdansim tig00112261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2383254
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 11
Found at i:871061 original size:13 final size:12
Alignment explanation
Indices: 871024--871057 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
871014 ATTAAAAAAA
*
871024 TAAATAAAT-AT
1 TAAAAAAATAAT
871035 TAAAAAAATAAT
1 TAAAAAAATAAT
871047 TAAAAAAATAA
1 TAAAAAAATAA
871058 ATTATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 8 0.38
12 13 0.62
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
TAAAAAAATAAT
Found at i:872700 original size:3 final size:3
Alignment explanation
Indices: 872692--872781 Score: 80
Period size: 3 Copynumber: 31.0 Consensus size: 3
872682 AATTATTTAT
* *
872692 TAA TAA TAA TAA -AA -ACA TAA TAA TAA TAA TAA TAT TTA TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
872736 TTA TAA TAA TTA TAA TAA TAA TAA -AA TAT TAA -AG TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
872782 AAACGAGACA
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
2 6 0.09
3 62 0.90
4 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:873312 original size:139 final size:137
Alignment explanation
Indices: 873020--873367 Score: 459
Period size: 137 Copynumber: 2.5 Consensus size: 137
873010 GTTAAATAAG
* *
873020 TTCTTCTCATTATGAACTTGTTTTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC-TCCTTCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTCC-TCTG
* * * * * *
873084 GAAATGTTGATCCTTAAGAAATGTATCGTTGATTCAACTTCATATGTGATGAATTAAGGCAAGGT
65 GAAATGTTGATCCTCAAGAAAGGTATCGTTCATTCAACTCCATAGGTGATGAATCAAGGCAAGGT
* *
873149 TGAACAAG
130 CGAACAAA
* * *
873157 TTCTTCTCATTATGAACTTCTTCTTCCTATTCAGATGAGTTATTCTCATTATGAACTTCCTCTGA
1 TTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTCCTCTGG
* * *
873222 AAATGTTGATCCTCAAGAGAGGTTCTTCTTTCATTCAACTCCATAGGTGATGAATCAA-GCTAAG
66 AAATGTTGATCCTCAAGAAAGG-T-ATCGTTCATTCAACTCCATAGGTGATGAATCAAGGC-AAG
873286 GTCGAACAAA
128 GTCGAACAAA
* * **
873296 TTCTTCTCATTATGAACTTTTTCTTCCTCTTCAGAT-AATTCTTCTCATTATGAACTTTATCTGG
1 TTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTCCTCTGG
873360 AAATGTTG
66 AAATGTTG
873368 GTGCTGATCT
Statistics
Matches: 184, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
137 75 0.41
138 37 0.20
139 72 0.39
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.40
Consensus pattern (137 bp):
TTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTCCTCTGG
AAATGTTGATCCTCAAGAAAGGTATCGTTCATTCAACTCCATAGGTGATGAATCAAGGCAAGGTC
GAACAAA
Found at i:874394 original size:19 final size:18
Alignment explanation
Indices: 874345--874395 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
874335 AAAATTCAAG
874345 ATTTTTGTAA-TA-AATT
1 ATTTTTGTAACTATAATT
874361 ATTTTTGT-ACTTATATATT
1 ATTTTTGTAAC-TATA-ATT
874380 ATTTTTGTAACTATAA
1 ATTTTTGTAACTATAA
874396 GTGTTAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.03
16 8 0.27
17 2 0.07
18 2 0.07
19 15 0.50
20 2 0.07
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (18 bp):
ATTTTTGTAACTATAATT
Found at i:874787 original size:274 final size:277
Alignment explanation
Indices: 874143--874929 Score: 1411
Period size: 274 Copynumber: 2.9 Consensus size: 277
874133 AGTGTTAATA
*
874143 ATTATTAC-AAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
1 ATTATCACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
* *
874207 ACTATAGTGATAACATATATTGTCATGACTATTTTTCTCCACTTTTTTTGTTTCAAAAGTTGTAT
66 ACTATAGTGATAGCATATATTGTCATGACTATTTTTCTCCAC-TTTTTTGTTTCAAAAGTTATAT
*
874272 TGATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAACTATCACATCAAATAATAA
130 TGATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAA
*
874337 AATTCAAGATTTTTGTAATAAATTATTTTTGTACTTATATATTATTTTTGTAACTATAAGTGTTA
195 AATTCAAGTTTTTTGTAATAAATTATTTTTGTACTTATATATTATTTTTGTAACTATAAGTGTTA
874402 ATAATTATTACAAAAAAT
260 ATAATTATTACAAAAAAT
*
874420 ATTGTCACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
1 ATTATCACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
* * *
874485 ACTATAGTGATAGCATAAATTATCATGACTATTTTTCTCCACTTTTTTATTTCAAAAGTTATATT
66 ACTATAGTGATAGCATATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTATATT
874550 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAAA
131 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAAA
* *
874615 ATTCAAGTTTTTTATAAT-AATTTTTTTTGTACTTATATATT-TTTTTGTAACTATAAGTGTTAA
196 ATTCAAGTTTTTTGTAATAAATTATTTTTGTACTTATATATTATTTTTGTAACTATAAGTGTTAA
874678 TAATTATTA-AAAAAAT
261 TAATTATTACAAAAAAT
*
874694 ATTATCACAAAAAATAATGATATTCACGTTTTTGTGATAAATTATATTTGTAGTTATAAAGTTTA
1 ATTATCACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
* *
874759 ACTATAGTGATCGCGTATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTATATT
66 ACTATAGTGATAGCATATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTATATT
874824 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAAA
131 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAAA
874889 ATTCAAGTTTTTTGTAATAAATTATTTTTGTACTTATATAT
196 ATTCAAGTTTTTTGTAATAAATTATTTTTGTACTTATATAT
874930 GTTAATCATT
Statistics
Matches: 488, Mismatches: 20, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
274 212 0.43
275 52 0.11
276 22 0.05
277 107 0.22
278 95 0.19
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (277 bp):
ATTATCACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
ACTATAGTGATAGCATATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTATATT
GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAAA
ATTCAAGTTTTTTGTAATAAATTATTTTTGTACTTATATATTATTTTTGTAACTATAAGTGTTAA
TAATTATTACAAAAAAT
Found at i:878295 original size:16 final size:17
Alignment explanation
Indices: 878276--878326 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 17
878266 ATTTCTCAAT
878276 ATAA-AAATTATAACAA
1 ATAATAAATTATAACAA
* * *
878292 ATAATATATTTTCAC-A
1 ATAATAAATTATAACAA
*
878308 ATAATCAATTATAACAA
1 ATAATAAATTATAACAA
878325 AT
1 AT
878327 TTATTTAGTC
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
16 16 0.62
17 10 0.38
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAATAAATTATAACAA
Found at i:878344 original size:22 final size:22
Alignment explanation
Indices: 878318--878374 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
878308 ATAATCAATT
*
878318 ATAACAAATTTATTTAGTCACA
1 ATAACAAATTTATTTAGTCAAA
* * *
878340 ATAACATATTAAATTTAGTTAAA
1 ATAACAAATT-TATTTAGTCAAA
878363 ATAA-AAATTTAT
1 ATAACAAATTTAT
878375 GTTAAATTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
21 2 0.07
22 13 0.46
23 13 0.46
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.39
Consensus pattern (22 bp):
ATAACAAATTTATTTAGTCAAA
Found at i:879725 original size:22 final size:22
Alignment explanation
Indices: 879694--879754 Score: 95
Period size: 22 Copynumber: 2.8 Consensus size: 22
879684 AAATCCAATA
*
879694 AATCTTTCATCTTTGAAAAGAG
1 AATCTATCATCTTTGAAAAGAG
* *
879716 AATTTATCATATTTGAAAAGAG
1 AATCTATCATCTTTGAAAAGAG
879738 AATCTATCATCTTTGAA
1 AATCTATCATCTTTGAA
879755 GAATGTAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.38
Consensus pattern (22 bp):
AATCTATCATCTTTGAAAAGAG
Found at i:880210 original size:54 final size:54
Alignment explanation
Indices: 880124--880285 Score: 279
Period size: 54 Copynumber: 3.0 Consensus size: 54
880114 ATAATCATTG
*
880124 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCCGTGGCTTCTGCCCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
* *
880178 GTTTGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGTCCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
* *
880232 GTTCATAAAATATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
880286 TTCTGGTCAA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.35
Consensus pattern (54 bp):
GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
Found at i:881287 original size:75 final size:75
Alignment explanation
Indices: 881159--881404 Score: 332
Period size: 75 Copynumber: 3.3 Consensus size: 75
881149 GATGTGGGTC
* * * * * * *
881159 TTCAGTATGCCCTAACATTTGTTGATACAGACGTTCAAAATGCACCAACATTCCTGA-TTCTGAT
1 TTCAGCATGCCCCAACATTTGCTGATACAAACGTTCAAAATGCATCAATATTCC-AATTTCTGAT
*
881223 TGAAAGGGGCT
65 TGAAATGGGCT
* * *
881234 TTCAGTATGCCCCAACATTTGCTGATACAAACGTTTAAAATGCGTCAATATTCCAATTTCTGATT
1 TTCAGCATGCCCCAACATTTGCTGATACAAACGTTCAAAATGCATCAATATTCCAATTTCTGATT
*
881299 CAAATGGGCT
66 GAAATGGGCT
* * *
881309 TTCAGCATGCCCCAACATTTGCTAATACAAACGTTCAAAATACATCAATATTCCAATTTTTGATT
1 TTCAGCATGCCCCAACATTTGCTGATACAAACGTTCAAAATGCATCAATATTCCAATTTCTGATT
881374 GAAATGGGCT
66 GAAATGGGCT
*
881384 TTCAGCATGCCCTAACATTTG
1 TTCAGCATGCCCCAACATTTG
881405 TTTCTAGCTA
Statistics
Matches: 152, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
74 1 0.01
75 151 0.99
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (75 bp):
TTCAGCATGCCCCAACATTTGCTGATACAAACGTTCAAAATGCATCAATATTCCAATTTCTGATT
GAAATGGGCT
Found at i:883936 original size:1 final size:1
Alignment explanation
Indices: 883930--883974 Score: 54
Period size: 1 Copynumber: 45.0 Consensus size: 1
883920 CCATCTTGAA
* * * *
883930 TTTTTTTTTCTTTTTTTTTTCTTCTTTTCTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
883975 GATGAATGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (1 bp):
T
Found at i:884274 original size:2 final size:2
Alignment explanation
Indices: 884267--884298 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
884257 ACAACAAGGG
*
884267 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
884299 TTGAAAGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:885977 original size:14 final size:15
Alignment explanation
Indices: 885960--885997 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
885950 ATAAAAGTAC
*
885960 AAATGCAAAAAT-GA
1 AAATGCAAAAATACA
*
885974 AAATGCAAAGATACA
1 AAATGCAAAAATACA
885989 AAATGCAAA
1 AAATGCAAA
885998 TGTATGTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.63, C:0.11, G:0.13, T:0.13
Consensus pattern (15 bp):
AAATGCAAAAATACA
Found at i:886140 original size:43 final size:44
Alignment explanation
Indices: 886076--886162 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 44
886066 CGGTGCATCA
* *
886076 AACAAAACTTTTACATGTAGGGGACAACTTTCAGTCCTAACTTC
1 AACAAAACTTTTACATATAGGGGACAACTTTCACTCCTAACTTC
* *
886120 AACAAAAC-TTTACATATAGGGGATAACTTTCTCTCCTAACTTC
1 AACAAAACTTTTACATATAGGGGACAACTTTCACTCCTAACTTC
886163 TCTAAAGCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 31 0.79
44 8 0.21
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (44 bp):
AACAAAACTTTTACATATAGGGGACAACTTTCACTCCTAACTTC
Found at i:887986 original size:12 final size:12
Alignment explanation
Indices: 887960--887995 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
887950 TATTTAAAAA
*
887960 TAAATAAAT-AT
1 TAAAAAAATAAT
887971 TAAAAAAATAAT
1 TAAAAAAATAAT
887983 TAAAAAAATAAT
1 TAAAAAAATAAT
887995 T
1 T
887996 TATATATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TAAAAAAATAAT
Found at i:888079 original size:133 final size:137
Alignment explanation
Indices: 887886--888142 Score: 375
Period size: 133 Copynumber: 1.9 Consensus size: 137
887876 ATAAATAAGG
*
887886 TATTTATTTACTTAGAAATATCAGAAAAGGACTTCTAGTTGCTTTAAGACAACCTCTTTCTTAAT
1 TATTTATTTACTTAAAAATATCAGAAAAGGACTTCTAGTTGCTTTAAGACAACCTCTTTCTTAAT
* *
887951 A-TTTAAAAATAAATAAAT-ATTAAA-AAAATA-ATTAA-AAAAATAATTTATATATAATTTATA
66 ATTTTAAAAATAAATAAATAAATAAATAAAA-ACA-TAATAAAAATAATTTATATAAAATTTATA
888011 AAAGTAGTA
129 AAAGTAGTA
* * *
888020 TATTTATTTATTTAAAAATATCA-AAAATGACTTCTAGTTGCTTTAAGACAGCC-CATTTCTTAA
1 TATTTATTTACTTAAAAATATCAGAAAAGGACTTCTAGTTGCTTTAAGACAACCTC-TTTCTTAA
*
888083 TATTTTAAAAATAAATAAATAAATAAATAAAAACATAATTAAAATAATTTATATAAAATT
65 TATTTTAAAAATAAATAAATAAATAAATAAAAACATAATAAAAATAATTTATATAAAATT
888143 AAAGCAAATA
Statistics
Matches: 110, Mismatches: 7, Indels: 10
0.87 0.06 0.08
Matches are distributed among these distances:
132 1 0.01
133 38 0.35
134 38 0.35
135 9 0.08
136 24 0.22
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (137 bp):
TATTTATTTACTTAAAAATATCAGAAAAGGACTTCTAGTTGCTTTAAGACAACCTCTTTCTTAAT
ATTTTAAAAATAAATAAATAAATAAATAAAAACATAATAAAAATAATTTATATAAAATTTATAAA
AGTAGTA
Found at i:889642 original size:3 final size:3
Alignment explanation
Indices: 889636--889678 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
889626 TATTTATTAT
*
889636 TAA TAA TAA AAA T-A TAA TAA TAA TAA TAA TAA TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
889679 AAATTAAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
2 4 0.11
3 32 0.89
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:889661 original size:20 final size:20
Alignment explanation
Indices: 889636--889678 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
889626 TATTTATTAT
*
889636 TAATAATAAAAATATAATAA
1 TAATAATAAAAATAAAATAA
*
889656 TAATAATAATAATAAAATAA
1 TAATAATAAAAATAAAATAA
889676 TAA
1 TAA
889679 AAATTAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
TAATAATAAAAATAAAATAA
Found at i:890113 original size:23 final size:22
Alignment explanation
Indices: 890086--890167 Score: 71
Period size: 23 Copynumber: 3.7 Consensus size: 22
890076 CATATGAATT
890086 TGTCCCGAAGGACCACGTAAGAA
1 TGTCCCGAAGGACCAC-TAAGAA
* * *
890109 TGTCCCAAAAGACCGC-ATAGAAA
1 TGTCCCGAAGGACCACTA-AG-AA
* *
890132 TGTCCCGAATGACCAC-AA-TA
1 TGTCCCGAAGGACCACTAAGAA
890152 TGTCCCGAAGGACCAC
1 TGTCCCGAAGGACCAC
890168 ATACATATTC
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
20 16 0.33
21 1 0.02
22 3 0.06
23 29 0.59
ACGTcount: A:0.35, C:0.29, G:0.21, T:0.15
Consensus pattern (22 bp):
TGTCCCGAAGGACCACTAAGAA
Found at i:890156 original size:20 final size:20
Alignment explanation
Indices: 890131--890168 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
890121 CCGCATAGAA
*
890131 ATGTCCCGAATGACCACAAT
1 ATGTCCCGAAGGACCACAAT
890151 ATGTCCCGAAGGACCACA
1 ATGTCCCGAAGGACCACA
890169 TACATATTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.18, T:0.16
Consensus pattern (20 bp):
ATGTCCCGAAGGACCACAAT
Found at i:890382 original size:15 final size:15
Alignment explanation
Indices: 890364--890397 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
890354 CACATAGGCT
890364 CATAGCTTCTTATCA
1 CATAGCTTCTTATCA
890379 CATAGCTTCTTATCA
1 CATAGCTTCTTATCA
890394 CATA
1 CATA
890398 ACTCATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.38
Consensus pattern (15 bp):
CATAGCTTCTTATCA
Found at i:891658 original size:25 final size:25
Alignment explanation
Indices: 891586--891651 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
891576 CTTAACATCC
*
891586 CAAGAATAAAACCAACTCAAAACTTA
1 CAAGAAT-TAACCAACTCAAAACTTA
891612 CAAGAATTAACCAACTCAAAACTTA
1 CAAGAATTAACCAACTCAAAACTTA
891637 CAAGAATTAACCAAC
1 CAAGAATTAACCAAC
891652 AGAAAACATT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
25 32 0.82
26 7 0.18
ACGTcount: A:0.55, C:0.24, G:0.05, T:0.17
Consensus pattern (25 bp):
CAAGAATTAACCAACTCAAAACTTA
Found at i:897698 original size:15 final size:15
Alignment explanation
Indices: 897678--897712 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
897668 GGTGTCCATT
897678 GCACCATATCACATA
1 GCACCATATCACATA
897693 GCACCATATCACATA
1 GCACCATATCACATA
897708 GCACC
1 GCACC
897713 GATAGAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.37, G:0.09, T:0.17
Consensus pattern (15 bp):
GCACCATATCACATA
Found at i:917686 original size:16 final size:17
Alignment explanation
Indices: 917665--917696 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
917655 CAAGACCATA
917665 ATATTAT-TTTTATATT
1 ATATTATATTTTATATT
917681 ATATTATATTTTATAT
1 ATATTATATTTTATAT
917697 AAATAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
ATATTATATTTTATATT
Found at i:920033 original size:60 final size:60
Alignment explanation
Indices: 919948--920106 Score: 144
Period size: 60 Copynumber: 2.6 Consensus size: 60
919938 TTTATTTATG
* * * * * *
919948 TTTTGGTCCCTTAAGTTTCTATTTTTTCTAGTTTAGTCCCTTAACTTTCT-ATTTTTGATA
1 TTTTAGTCCTTTAAATTTTTATTTTTTCTA-TTTAGTCCCTTAAATTTATGATTTTTGATA
* * * * * *
920008 TTTTAGTCCTTTAACTTTTTATTTTTAT-TATTTTAATCCTTTAAATTTATGTTTTTTGTTC
1 TTTTAGTCCTTTAAATTTTTATTTTT-TCTA-TTTAGTCCCTTAAATTTATGATTTTTGATA
*
920069 TTTTAGT-CTTGTAAATTTTTGTTTTTTCTATTTAGTCC
1 TTTTAGTCCTT-TAAATTTTTATTTTTTCTATTTAGTCC
920107 TTTATTTTAA
Statistics
Matches: 80, Mismatches: 15, Indels: 8
0.78 0.15 0.08
Matches are distributed among these distances:
60 50 0.62
61 30 0.38
ACGTcount: A:0.18, C:0.13, G:0.08, T:0.62
Consensus pattern (60 bp):
TTTTAGTCCTTTAAATTTTTATTTTTTCTATTTAGTCCCTTAAATTTATGATTTTTGATA
Found at i:920040 original size:30 final size:29
Alignment explanation
Indices: 919932--920110 Score: 121
Period size: 30 Copynumber: 5.9 Consensus size: 29
919922 TGGGAACCTA
* * *
919932 TTTTATTTTATTTATGTTTTGGTCCCTTAAGT
1 TTTTATTTT-TTTA--TTTTAGTCCTTTAAAT
* * * *
919964 TTCTATTTTTTCTAGTTTAGTCCCTTAACT
1 TTTTATTTTTT-TATTTTAGTCCTTTAAAT
* * *
919994 TTCTATTTTTGATATTTTAGTCCTTTAACT
1 TTTTATTTTT-TTATTTTAGTCCTTTAAAT
*
920024 TTTTATTTTTATTATTTTAATCCTTTAAAT
1 TTTTATTTTT-TTATTTTAGTCCTTTAAAT
*
920054 TTATGT-TTTTTGTTCTTTTAGT-CTTGTAAAT
1 TT-T-TATTTTT-TTATTTTAGTCCTT-TAAAT
*
920085 TTTTGTTTTTTCTA-TTTAGTCCTTTA
1 TTTTATTTTTT-TATTTTAGTCCTTTA
920111 TTTTAATAAG
Statistics
Matches: 123, Mismatches: 16, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
29 10 0.08
30 79 0.64
31 23 0.19
32 11 0.09
ACGTcount: A:0.18, C:0.11, G:0.08, T:0.63
Consensus pattern (29 bp):
TTTTATTTTTTTATTTTAGTCCTTTAAAT
Found at i:920410 original size:21 final size:21
Alignment explanation
Indices: 920386--920425 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
920376 TTCAATTCAT
920386 TTTTACTTTACTTTTATTTTG
1 TTTTACTTTACTTTTATTTTG
* *
920407 TTTTATTTTATTTTTATTT
1 TTTTACTTTACTTTTATTT
920426 GTCCTTATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.78
Consensus pattern (21 bp):
TTTTACTTTACTTTTATTTTG
Found at i:920423 original size:11 final size:11
Alignment explanation
Indices: 920384--920425 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
920374 TTTTCAATTC
*
920384 ATTTTTACTTT
1 ATTTTTATTTT
*
920395 ACTTTTATTTT
1 ATTTTTATTTT
*
920406 -GTTTTATTTT
1 ATTTTTATTTT
920416 ATTTTTATTT
1 ATTTTTATTT
920426 GTCCTTATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:920433 original size:21 final size:21
Alignment explanation
Indices: 920392--920433 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
920382 TCATTTTTAC
*
920392 TTTACTTTTATTTTGTTTTAT
1 TTTACTTTTATTTTGTCTTAT
*
920413 TTTATTTTTA-TTTGTCCTTAT
1 TTTACTTTTATTTTGT-CTTAT
920434 GAAAATGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (21 bp):
TTTACTTTTATTTTGTCTTAT
Found at i:923367 original size:3 final size:3
Alignment explanation
Indices: 923359--923387 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
923349 GTATACCCAG
923359 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
923388 ATATATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:925527 original size:28 final size:28
Alignment explanation
Indices: 925495--925576 Score: 105
Period size: 28 Copynumber: 2.9 Consensus size: 28
925485 GAAACAAATC
925495 ATCTTTGAGTTTGTTTTTCTTGAAACAA
1 ATCTTTGAGTTTGTTTTTCTTGAAACAA
* *
925523 ATCTTTGAATCTGTTTCTT-TTGAAACAA
1 ATCTTTGAGTTTGTTT-TTCTTGAAACAA
*
925551 ATCTTTGAG-TCGATTTTTCTTGAAAC
1 ATCTTTGAGTTTG-TTTTTCTTGAAAC
925577 TATAATTCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
27 3 0.07
28 41 0.89
29 2 0.04
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (28 bp):
ATCTTTGAGTTTGTTTTTCTTGAAACAA
Found at i:925818 original size:131 final size:130
Alignment explanation
Indices: 925584--926062 Score: 505
Period size: 131 Copynumber: 3.6 Consensus size: 130
925574 AACTATAATT
* *
925584 CCTAAAGATGGCC-AGCCATCCTCATCACGTAGGAACCGTATCATCCCCCGACCAGACCTCCTCA
1 CCTAAAGATGGCCTA-CCGTCCTCATCACGTAGGAACCGTGTCATCCCCCGACCAGACCTCCTCA
* * **
925648 CCACGTAAGAGCCATGTCATACCTAGATAA-CATGTCATCCTCATCACGTAGGAACTGTGTTATC
65 TCACGTAGGAGCCATGTCACCCCTAGATAACCA-GTCATCCTCATCACGTA-GAACTGTGTTATC
925712 ATC
128 ATC
* * *
925715 CCTAAATATGGCCTACCGTCCTCGTCACGTAGGAACCGTGTCATCCCCCGACTAGACCTCCTCAT
1 CCTAAAGATGGCCTACCGTCCTCATCACGTAGGAACCGTGTCATCCCCCGACCAGACCTCCTCAT
* * * * * *
925780 CACGTAGGAGCCGTGTAACCCCTAAATAACCAGCCATCCTTATCACGTAGAAATCGTGTTATCAT
66 CACGTAGGAGCCATGTCACCCCTAGATAACCAGTCATCCTCATCACGTAGAACT-GTGTTATCAT
925845 C
130 C
* * ** * * * *
925846 CTTAAAGATAGCCTATTGTCCTCATCACATAGGAACTGTGTCATCCCCTGACCATACCTCCTCAT
1 CCTAAAGATGGCCTACCGTCCTCATCACGTAGGAACCGTGTCATCCCCCGACCAGACCTCCTCAT
* * * * *
925911 CACGTAGGAGCCATGTCACCCCTAGATAACCAATCATCCTCATCGCGTAAGAACCGAGTTATCCT
66 CACGTAGGAGCCATGTCACCCCTAGATAACCAGTCATCCTCATCACGT-AGAACTGTGTTATCAT
925976 CC
130 -C
* * * * * * * * *
925978 TTCCTAAAGATGGCCAGAAC-TCTTCATAACGTATGAGCCTTGTCATCCCCCGAACAGATCTCCT
1 --CCTAAAGATGGCC-TACCGTCCTCATCACGTAGGAACCGTGTCATCCCCCGACCAGACCTCCT
* *
926042 CATCACGTAGAAGCCGTGTCA
63 CATCACGTAGGAGCCATGTCA
926063 TCCTTAGACG
Statistics
Matches: 285, Mismatches: 55, Indels: 13
0.81 0.16 0.04
Matches are distributed among these distances:
130 4 0.01
131 209 0.73
132 8 0.03
134 63 0.22
135 1 0.00
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (130 bp):
CCTAAAGATGGCCTACCGTCCTCATCACGTAGGAACCGTGTCATCCCCCGACCAGACCTCCTCAT
CACGTAGGAGCCATGTCACCCCTAGATAACCAGTCATCCTCATCACGTAGAACTGTGTTATCATC
Found at i:926286 original size:3 final size:3
Alignment explanation
Indices: 926280--926341 Score: 115
Period size: 3 Copynumber: 20.7 Consensus size: 3
926270 ATTATTATTA
*
926280 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTA TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
926328 TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TT
926342 AATACAAAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.02, C:0.00, G:0.31, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:927695 original size:28 final size:30
Alignment explanation
Indices: 927634--927707 Score: 100
Period size: 28 Copynumber: 2.5 Consensus size: 30
927624 GTAAATATCT
*
927634 TATTTTAGTCCCTTAACTTTCTATTTTTGA
1 TATTTTAGTCCTTTAACTTTCTATTTTTGA
927664 TATTTTAGTCCTTTAAC-TT-TATTTTT-A
1 TATTTTAGTCCTTTAACTTTCTATTTTTGA
*
927691 CTATTTTAATCCTTTAA
1 -TATTTTAGTCCTTTAA
927708 ATATCTGTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
27 1 0.02
28 22 0.54
29 2 0.05
30 16 0.39
ACGTcount: A:0.23, C:0.15, G:0.04, T:0.58
Consensus pattern (30 bp):
TATTTTAGTCCTTTAACTTTCTATTTTTGA
Found at i:935210 original size:2 final size:2
Alignment explanation
Indices: 935203--935229 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
935193 GATTCGAATA
935203 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
935230 AAAATAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:935539 original size:52 final size:52
Alignment explanation
Indices: 935482--935601 Score: 231
Period size: 52 Copynumber: 2.3 Consensus size: 52
935472 AGAGGCTCCA
935482 TGGTGCATCGGTGCATCAGTGTAAAATTCATATATATTGACCGTTGGACCCT
1 TGGTGCATCGGTGCATCAGTGTAAAATTCATATATATTGACCGTTGGACCCT
935534 TGGTGCATCGGTGCATCAGTGTAAAATTCATATATATTGACCGTTGGACCCT
1 TGGTGCATCGGTGCATCAGTGTAAAATTCATATATATTGACCGTTGGACCCT
*
935586 TAGTGCATCGGTGCAT
1 TGGTGCATCGGTGCAT
935602 TAAGAGTTCA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (52 bp):
TGGTGCATCGGTGCATCAGTGTAAAATTCATATATATTGACCGTTGGACCCT
Found at i:935741 original size:65 final size:64
Alignment explanation
Indices: 935610--935764 Score: 177
Period size: 65 Copynumber: 2.4 Consensus size: 64
935600 ATTAAGAGTT
* * * * **
935610 CATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGTTGGTG
1 CATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAATCCATCGATGCATGGTAAGTG
* * * * *
935674 CATCGATGCATCAAATGCATTTGATGTTTTCATAAA-ATCCTCAATCCATCGGTTCATGGTAAGT
1 CATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCACAATCCATCGATGCATGGTAAGT
935738 G
64 G
*
935739 CATCGATGCATGAAATGCATTCGATG
1 CATCGATGCATCAAATGCATTCGATG
935765 CTCAATTTAA
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
64 24 0.32
65 49 0.64
66 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (64 bp):
CATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAATCCATCGATGCATGGTAAGTG
Found at i:944396 original size:65 final size:65
Alignment explanation
Indices: 944255--944415 Score: 184
Period size: 65 Copynumber: 2.5 Consensus size: 65
944245 GTGCATTAAG
* * * *
944255 AGTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATTGATGCATGGCT
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAATGCATCGATGCATGGCT
* * * * *
944319 GGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAATGCATCGGTGTATGG-
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAATGCATCGATGCATGGC
944382 T
65 T
* *
944383 AAGTGCATCGATGCATGAAATGCATTCGGTGTT
1 -AGTGCATCGATGCATCAAATGCATTCGATGTT
944416 CAATTTAATT
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
64 29 0.35
65 50 0.61
66 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (65 bp):
AGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAATGCATCGATGCATGGCT
Found at i:952196 original size:73 final size:73
Alignment explanation
Indices: 952074--952216 Score: 223
Period size: 73 Copynumber: 2.0 Consensus size: 73
952064 TGAGGTACAA
*
952074 AAATTGGTGATTACACATAAACATTTTAAAAATATATATAACACAAACTCATCAAATAAGATTGT
1 AAATTGGTGATTACACATAAACATTTTAAAAATATATATAACACAAACTCATCAAATAAGATTGC
952139 TTTTTTTT
66 TTTTTTTT
* * * * * *
952147 AAATTGGTGGTTATACATAACCATTTTAAATATATATATAACACGAACTCATCAAGTAAGATTGC
1 AAATTGGTGATTACACATAAACATTTTAAAAATATATATAACACAAACTCATCAAATAAGATTGC
952212 TTTTT
66 TTTTT
952217 CTAAAGATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 63 1.00
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (73 bp):
AAATTGGTGATTACACATAAACATTTTAAAAATATATATAACACAAACTCATCAAATAAGATTGC
TTTTTTTT
Found at i:952870 original size:23 final size:21
Alignment explanation
Indices: 952829--952879 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 21
952819 CGATGATTAT
952829 TATTTTTCTTGTTCTTTTTCA
1 TATTTTTCTTGTTCTTTTTCA
*
952850 TATTTTGTCTTTGTT-TATTTTCT
1 TATTTT-TC-TTGTTCT-TTTTCA
952873 TATTTTT
1 TATTTTT
952880 TTCACTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 6 0.23
22 4 0.15
23 16 0.62
ACGTcount: A:0.10, C:0.10, G:0.06, T:0.75
Consensus pattern (21 bp):
TATTTTTCTTGTTCTTTTTCA
Found at i:954733 original size:16 final size:16
Alignment explanation
Indices: 954714--954745 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
954704 ATTTATTTAA
*
954714 ATAATTTATTATTATT
1 ATAATTTATAATTATT
954730 ATAATTTATAATTATT
1 ATAATTTATAATTATT
954746 TTTTTGACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
ATAATTTATAATTATT
Found at i:954825 original size:19 final size:19
Alignment explanation
Indices: 954695--954866 Score: 70
Period size: 19 Copynumber: 8.8 Consensus size: 19
954685 CATTAAATTA
*
954695 AATATTTTAAT-TTATTTA
1 AATATTTTAATATTATTTT
* * *
954713 AATAATTTATTATTATTAT
1 AATATTTTAATATTATTTT
* *
954732 AAT-TTATAATTATTTTTTT
1 AATATTTTAA-TATTATTTT
*
954751 GACT-TTTTAATA-T-TTTT
1 -AATATTTTAATATTATTTT
* *
954768 AATTTATTTACATAATATTTT
1 AATAT-TTTA-ATATTATTTT
*
954789 AATAATAATATAAATATTATTTT
1 AAT-AT--T-TTAATATTATTTT
*
954812 AATATTTTAATATT-TTTA
1 AATATTTTAATATTATTTT
* * *
954830 AATAATATTAAT-TTATGTA
1 AAT-ATTTTAATATTATTTT
954849 AATATTTTTAAATATTAT
1 AATA-TTTT-AATATTAT
954867 AAATTTATAT
Statistics
Matches: 118, Mismatches: 20, Indels: 29
0.71 0.12 0.17
Matches are distributed among these distances:
16 2 0.02
17 5 0.04
18 26 0.22
19 43 0.36
20 12 0.10
21 11 0.09
22 3 0.03
23 14 0.12
24 2 0.02
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (19 bp):
AATATTTTAATATTATTTT
Found at i:954902 original size:22 final size:22
Alignment explanation
Indices: 954855--954902 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
954845 TGTAAATATT
*
954855 TTTAAATATTATAAATTTATAT
1 TTTAAATATTATAAATTTATAA
* *
954877 TTTAAATTTTA-AATATTTTTAA
1 TTTAAATATTATAA-ATTTATAA
954899 TTTA
1 TTTA
954903 TATAAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTAAATATTATAAATTTATAA
Found at i:955024 original size:19 final size:20
Alignment explanation
Indices: 954992--955040 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
954982 AAAATTAATT
954992 AAATA-TTAATAT-AATAACA
1 AAATATTTAATATAAATAA-A
*
955011 AAATATTTAA-ATAAATTAA
1 AAATATTTAATATAAATAAA
955030 AAATATTTAAT
1 AAATATTTAAT
955041 TTAACATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 18 0.69
20 8 0.31
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATATTTAATATAAATAAA
Found at i:962845 original size:56 final size:55
Alignment explanation
Indices: 962767--962881 Score: 149
Period size: 56 Copynumber: 2.1 Consensus size: 55
962757 ATTTGGGTCT
* * * *
962767 AAGACATTTGTGCAAGAATCCGACAGGGAGGTTCAAGATAGAATGTTGAGCATGCC
1 AAGACATTGGTGCAAGAATCCGACAGGGAGGCTCAAGATAG-ATATCGAGCATGCC
* ** *
962823 AAGACATTGGTTCAAGTGTCCGACAGGGAGGCTCAAGATAGATATCGAGCTTGCC
1 AAGACATTGGTGCAAGAATCCGACAGGGAGGCTCAAGATAGATATCGAGCATGCC
962878 AAGA
1 AAGA
962882 TCACCAGACT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
55 15 0.29
56 36 0.71
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (55 bp):
AAGACATTGGTGCAAGAATCCGACAGGGAGGCTCAAGATAGATATCGAGCATGCC
Found at i:964377 original size:38 final size:37
Alignment explanation
Indices: 964335--964407 Score: 87
Period size: 38 Copynumber: 1.9 Consensus size: 37
964325 TTTATTACTG
964335 ATAAT-TTTAGAATTA-ATTTATCATTTATATTTTGATTT
1 ATAATATTT-GAATTATATTTATC-TTTAT-TTTTGATTT
* *
964373 ATAATATTTTAATTATATTTTTCTTTATTTTTGAT
1 ATAATATTTGAATTATATTTATCTTTATTTTTGAT
964408 AATTTTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 7 0.23
38 15 0.48
39 9 0.29
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.62
Consensus pattern (37 bp):
ATAATATTTGAATTATATTTATCTTTATTTTTGATTT
Found at i:977331 original size:20 final size:23
Alignment explanation
Indices: 977306--977346 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
977296 CATATACAAA
977306 AATAT-AG-AAATCGG-ATAATC
1 AATATAAGAAAATCGGTATAATC
977326 AATATAAGAAAATCGGTATAA
1 AATATAAGAAAATCGGTATAA
977347 AATACCGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 2 0.11
22 7 0.39
23 4 0.22
ACGTcount: A:0.54, C:0.07, G:0.15, T:0.24
Consensus pattern (23 bp):
AATATAAGAAAATCGGTATAATC
Found at i:981040 original size:12 final size:12
Alignment explanation
Indices: 981023--981053 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
981013 TCAATTTGTT
981023 GTACTCAGCCAC
1 GTACTCAGCCAC
*
981035 GTACTCAGCCTC
1 GTACTCAGCCAC
981047 GTACTCA
1 GTACTCA
981054 TGTACTGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.39, G:0.16, T:0.23
Consensus pattern (12 bp):
GTACTCAGCCAC
Found at i:982410 original size:137 final size:134
Alignment explanation
Indices: 982207--982485 Score: 328
Period size: 137 Copynumber: 2.1 Consensus size: 134
982197 GCCTAAGTGC
* * *
982207 CGAAATGGAAATTCACACTCATTATGAATTCCATGGATGCACACATAGTGTCGAAAGTACATATA
1 CGAAAT-GAAATTCACACTCATTATGAATACCATGGATGCACACATAGTGCCGAAAGTACACATA
* * ** * *
982272 GTACTAATACAAAAATGCAACA-TATGCATTAAACAAAATCGATTGATAACTTTTATACATAATT
65 GTACTAATACAAAAATACAACATTATGCATTAAACAAAATCGATCGATAACCATTACACACAATT
982336 GTATGT
130 -TATGT
* * *
982342 CGAAATGATAATTCACAAACTTATTATGAATACCATGGTTGCACATC-TAGTGCCGAAAGTATAC
1 CGAAATGA-AATTCAC--ACTCATTATGAATACCATGGATGCACA-CATAGTGCCGAAAGTACAC
* * * * * *
982406 ATAGTACTGATACGAAAATACACCATTATGTATTACACAAAATCGATCGATAACCATTACATACA
62 ATAGTACTAATACAAAAATACAACATTATGCATTAAACAAAATCGATCGATAACCATTACACACA
982471 ATTTATGT
127 ATTTATGT
982479 CGAAATG
1 CGAAATG
982486 CACTTATGAC
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
134 2 0.02
135 13 0.11
137 71 0.59
138 35 0.29
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (134 bp):
CGAAATGAAATTCACACTCATTATGAATACCATGGATGCACACATAGTGCCGAAAGTACACATAG
TACTAATACAAAAATACAACATTATGCATTAAACAAAATCGATCGATAACCATTACACACAATTT
ATGT
Found at i:984832 original size:20 final size:21
Alignment explanation
Indices: 984804--984855 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 21
984794 GATTCAAGTG
*
984804 GTATTGATACCAAGAGG-GGA
1 GTATCGATACCAAGAGGAGGA
* * *
984824 GTATCGATACTATGAGGATGA
1 GTATCGATACCAAGAGGAGGA
984845 -TATCGATACCA
1 GTATCGATACCA
984856 TTGTTAACAG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (21 bp):
GTATCGATACCAAGAGGAGGA
Found at i:987670 original size:31 final size:31
Alignment explanation
Indices: 987648--987739 Score: 166
Period size: 31 Copynumber: 3.0 Consensus size: 31
987638 TACAGTCTCT
987648 CAACATTTAGTCTATTTGCAATATGGTCCCC
1 CAACATTTAGTCTATTTGCAATATGGTCCCC
*
987679 CAACATTTAGTCTGTTTGCAATATGGTCCCC
1 CAACATTTAGTCTATTTGCAATATGGTCCCC
*
987710 CAACATTTAGTCTATTTGTAATATGGTCCC
1 CAACATTTAGTCTATTTGCAATATGGTCCC
987740 TGATGTAACT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
CAACATTTAGTCTATTTGCAATATGGTCCCC
Found at i:987994 original size:2 final size:2
Alignment explanation
Indices: 987987--988028 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
987977 ATGTCAATGT
987987 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
988029 ATCTAAATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:988144 original size:11 final size:10
Alignment explanation
Indices: 988113--988147 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
988103 CAGATTACAA
988113 TAAAAA-ATT
1 TAAAAATATT
988122 TAAAAATATT
1 TAAAAATATT
988132 TAAAAATATTT
1 TAAAAATA-TT
988143 TAAAA
1 TAAAA
988148 CCATATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 6 0.25
10 11 0.46
11 7 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
TAAAAATATT
Found at i:988423 original size:20 final size:20
Alignment explanation
Indices: 988387--988424 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
988377 CCAGGGTGCC
*
988387 TATAAAAAAGTGAACAACCA
1 TATAAAAAAGTAAACAACCA
988407 TATAAAAAA-TAACACAAC
1 TATAAAAAAGTAA-ACAAC
988425 ATGAATGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.63, C:0.16, G:0.05, T:0.16
Consensus pattern (20 bp):
TATAAAAAAGTAAACAACCA
Found at i:989567 original size:21 final size:21
Alignment explanation
Indices: 989542--989602 Score: 108
Period size: 19 Copynumber: 3.0 Consensus size: 21
989532 ATGATATGTA
989542 TTTTTCTACTTAAATTATTTT
1 TTTTTCTACTTAAATTATTTT
989563 TTTTTCTACTTAAATTA--TT
1 TTTTTCTACTTAAATTATTTT
989582 TTTTTCTACTTAAATTATTTT
1 TTTTTCTACTTAAATTATTTT
989603 GTTTCACACT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 19 0.50
21 19 0.50
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTCTACTTAAATTATTTT
Found at i:990291 original size:31 final size:31
Alignment explanation
Indices: 990256--990322 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
990246 TTAAAACTTA
990256 CAATACAGTCCCACAAAATTTAGTCCATTTG
1 CAATACAGTCCCACAAAATTTAGTCCATTTG
** * *
990287 CAATATGGTCCCCCAACATTTAGTCCATTTG
1 CAATACAGTCCCACAAAATTTAGTCCATTTG
990318 CAATA
1 CAATA
990323 TGGTCCCTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (31 bp):
CAATACAGTCCCACAAAATTTAGTCCATTTG
Found at i:990323 original size:31 final size:31
Alignment explanation
Indices: 990263--990329 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
990253 TTACAATACA
990263 GTCCCACAAAATTTAGTCCATTTGCAATATG
1 GTCCCACAAAATTTAGTCCATTTGCAATATG
* *
990294 GTCCCCCAACATTTAGTCCATTTGCAATATG
1 GTCCCACAAAATTTAGTCCATTTGCAATATG
990325 GTCCC
1 GTCCC
990330 TAACGACTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.31
Consensus pattern (31 bp):
GTCCCACAAAATTTAGTCCATTTGCAATATG
Found at i:997191 original size:23 final size:23
Alignment explanation
Indices: 997138--997192 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
997128 TTTAGTTATA
997138 ATTAAGTAA-ATTTTATATATTTT
1 ATTAAG-AATATTTTATATATTTT
* *
997161 ATTTAGAATATTTTA-ATTTTTT
1 ATTAAGAATATTTTATATATTTT
997183 ATTAAAGAAT
1 ATT-AAGAAT
997193 TATTGTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
ATTAAGAATATTTTATATATTTT
Found at i:997625 original size:3 final size:3
Alignment explanation
Indices: 997619--997697 Score: 144
Period size: 3 Copynumber: 27.0 Consensus size: 3
997609 TTTGTTGTTG
997619 TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
997666 TTA TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
997698 GTGTTAACGT
Statistics
Matches: 74, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
2 4 0.05
3 70 0.95
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:999191 original size:19 final size:19
Alignment explanation
Indices: 999167--999211 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
999157 CGGCCAAGAG
999167 CATGTATATTCATTTAAAT
1 CATGTATATTCATTTAAAT
999186 CATGTATATTCATTTAAAT
1 CATGTATATTCATTTAAAT
*
999205 AATGTAT
1 CATGTAT
999212 TTTAATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.47
Consensus pattern (19 bp):
CATGTATATTCATTTAAAT
Found at i:999595 original size:13 final size:13
Alignment explanation
Indices: 999577--999634 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
999567 ACTGTCTATT
999577 CATCACCATCTTC
1 CATCACCATCTTC
*
999590 CATCACCAT-TTT
1 CATCACCATCTTC
* *
999602 CA-CGCCTATATT-
1 CATCACC-ATCTTC
999614 -ATCACCATCTTC
1 CATCACCATCTTC
999626 CATCACCAT
1 CATCACCAT
999635 TGCACGCCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
11 8 0.22
12 9 0.25
13 19 0.53
ACGTcount: A:0.26, C:0.40, G:0.02, T:0.33
Consensus pattern (13 bp):
CATCACCATCTTC
Found at i:999652 original size:22 final size:22
Alignment explanation
Indices: 999626--999701 Score: 134
Period size: 22 Copynumber: 3.5 Consensus size: 22
999616 CACCATCTTC
999626 CATCACCATTGCACGCCTATAT
1 CATCACCATTGCACGCCTATAT
999648 CATCACCATTGCACGCCTATAT
1 CATCACCATTGCACGCCTATAT
* *
999670 CATCACCATTTCAAGCCTATAT
1 CATCACCATTGCACGCCTATAT
999692 CATCACCATT
1 CATCACCATT
999702 CCCTTACCAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.29, C:0.36, G:0.07, T:0.29
Consensus pattern (22 bp):
CATCACCATTGCACGCCTATAT
Found at i:999653 original size:35 final size:36
Alignment explanation
Indices: 999572--999656 Score: 138
Period size: 35 Copynumber: 2.4 Consensus size: 36
999562 AAGATACTGT
*
999572 CTAT-TCATCACCATCTTCCATCACCATTTTCACGC
1 CTATATCATCACCATCTTCCATCACCATTTGCACGC
*
999607 CTATATTATCACCATCTTCCATCACCA-TTGCACGC
1 CTATATCATCACCATCTTCCATCACCATTTGCACGC
999642 CTATATCATCACCAT
1 CTATATCATCACCAT
999657 TGCACGCCTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
35 25 0.54
36 21 0.46
ACGTcount: A:0.26, C:0.38, G:0.04, T:0.33
Consensus pattern (36 bp):
CTATATCATCACCATCTTCCATCACCATTTGCACGC
Found at i:1000089 original size:7 final size:6
Alignment explanation
Indices: 1000070--1000110 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
1000060 GTGCTGCAAC
* *
1000070 AAAAAG CAAAAG AAAGAAG AAAAAC AAAAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAA
1000111 GAATCCTACA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.80, C:0.05, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:1000097 original size:18 final size:19
Alignment explanation
Indices: 1000070--1000110 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
1000060 GTGCTGCAAC
1000070 AAAAAGC-AAAAGAAAGAAG
1 AAAAAGCAAAAAGAAA-AAG
1000089 AAAAA-CAAAAAGAAAAAG
1 AAAAAGCAAAAAGAAAAAG
1000107 AAAA
1 AAAA
1000111 GAATCCTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.80, C:0.05, G:0.15, T:0.00
Consensus pattern (19 bp):
AAAAAGCAAAAAGAAAAAG
Found at i:1001415 original size:24 final size:23
Alignment explanation
Indices: 1001363--1001417 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
1001353 AAGAATCATG
*
1001363 GCTTTTGAAGGACTAAAAGATGT
1 GCTTTTGAAGAACTAAAAGATGT
*
1001386 GACTTTTGAAGAAC-AAATAGTTGTT
1 G-CTTTTGAAGAACTAAA-AGATG-T
1001411 GCTTTTG
1 GCTTTTG
1001418 GTGATCAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 4 0.15
24 21 0.78
25 2 0.07
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (23 bp):
GCTTTTGAAGAACTAAAAGATGT
Found at i:1003690 original size:35 final size:36
Alignment explanation
Indices: 1003615--1003695 Score: 128
Period size: 35 Copynumber: 2.3 Consensus size: 36
1003605 TACTGTCTGT
* *
1003615 TCATCACCATCTTCCATTACCATTTTCACGCCTATA
1 TCATCACCATCTTCCATCACCATTTGCACGCCTATA
*
1003651 TCATCACCATCTTCCATCACCA-TTGCATGCCTATA
1 TCATCACCATCTTCCATCACCATTTGCACGCCTATA
1003686 TCATCACCAT
1 TCATCACCAT
1003696 TTCACGCCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 21 0.50
36 21 0.50
ACGTcount: A:0.26, C:0.37, G:0.04, T:0.33
Consensus pattern (36 bp):
TCATCACCATCTTCCATCACCATTTGCACGCCTATA
Found at i:1003691 original size:22 final size:22
Alignment explanation
Indices: 1003665--1003718 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
1003655 CACCATCTTC
*
1003665 CATCACCATTGCATGCCTATAT
1 CATCACCATTGCACGCCTATAT
*
1003687 CATCACCATTTCACGCCTATAT
1 CATCACCATTGCACGCCTATAT
1003709 CATCACCATT
1 CATCACCATT
1003719 CCCTTACCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.28, C:0.35, G:0.06, T:0.31
Consensus pattern (22 bp):
CATCACCATTGCACGCCTATAT
Found at i:1004539 original size:22 final size:20
Alignment explanation
Indices: 1004499--1004540 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
1004489 TATTAGTAAG
*
1004499 AAATAATAAATAAATAAATA
1 AAATAATAAATAAACAAATA
1004519 AAATAATATAGATAAACAAATA
1 AAATAATA-A-ATAAACAAATA
1004541 CCAAGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 1 0.05
22 10 0.53
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (20 bp):
AAATAATAAATAAACAAATA
Found at i:1004782 original size:23 final size:23
Alignment explanation
Indices: 1004751--1004794 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
1004741 TAAAGAAAGT
*
1004751 TTTGAGAAAGTCTTGGTATTGTG
1 TTTGAGAAAGTCTTGGGATTGTG
*
1004774 TTTGTGAAAGTCTTGGGATTG
1 TTTGAGAAAGTCTTGGGATTG
1004795 GATCCCTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.32, T:0.43
Consensus pattern (23 bp):
TTTGAGAAAGTCTTGGGATTGTG
Found at i:1008945 original size:20 final size:20
Alignment explanation
Indices: 1008909--1008959 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
1008899 AAACATATGT
1008909 AATATATATAATT-TTTTAGAA
1 AATATA-AT-ATTGTTTTAGAA
* * *
1008930 CATATTATATTGTTTTTGAA
1 AATATAATATTGTTTTAGAA
1008950 AATATAATAT
1 AATATAATAT
1008960 ATATTATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
19 3 0.12
20 17 0.71
21 4 0.17
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (20 bp):
AATATAATATTGTTTTAGAA
Found at i:1010429 original size:22 final size:21
Alignment explanation
Indices: 1010378--1010429 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
1010368 GCTTTATTTC
1010378 ATTGATTATTTATTATCTTAAT
1 ATTGATT-TTTATTATCTTAAT
* *
1010400 TTTTATTTTTATT-TCTTCTAAT
1 ATTGATTTTTATTATC-T-TAAT
1010422 ATTGATTT
1 ATTGATTT
1010430 AATTTTTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 2 0.08
21 7 0.29
22 15 0.62
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (21 bp):
ATTGATTTTTATTATCTTAAT
Found at i:1013663 original size:25 final size:27
Alignment explanation
Indices: 1013611--1013665 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
1013601 TCAAAAGAAA
*
1013611 AGGAAAGAAAGGAAAAAGAAGAAGAAG
1 AGGAAAGAAAGGAAAAAGAAGAAAAAG
* *
1013638 AGGAAA-AAATGAAAAA-AATAAAAAG
1 AGGAAAGAAAGGAAAAAGAAGAAAAAG
1013663 AGG
1 AGG
1013666 TTGTGAGGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.40
26 9 0.36
27 6 0.24
ACGTcount: A:0.69, C:0.00, G:0.27, T:0.04
Consensus pattern (27 bp):
AGGAAAGAAAGGAAAAAGAAGAAAAAG
Found at i:1016275 original size:21 final size:21
Alignment explanation
Indices: 1016251--1016334 Score: 114
Period size: 21 Copynumber: 4.0 Consensus size: 21
1016241 TATATAATTT
*
1016251 TTTTGAAAATATATAATATAG
1 TTTTGAAAACATATAATATAG
* *
1016272 TTTTTAAAAACATATTATATAG
1 -TTTTGAAAACATATAATATAG
* *
1016294 TTTTTAAAACATATTATATAG
1 TTTTGAAAACATATAATATAG
1016315 TTTTGAAAACATATAATATA
1 TTTTGAAAACATATAATATA
1016335 TAGAGTTTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
21 38 0.68
22 18 0.32
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (21 bp):
TTTTGAAAACATATAATATAG
Found at i:1016281 original size:22 final size:22
Alignment explanation
Indices: 1016250--1016351 Score: 100
Period size: 22 Copynumber: 4.5 Consensus size: 22
1016240 ATATATAATT
*
1016250 TTTTTGAAAATATATAATATAG
1 TTTTTAAAAATATATAATATAG
* *
1016272 TTTTTAAAAACATATTATATAG
1 TTTTTAAAAATATATAATATAG
1016294 TTTTTAAAACATAT-T-ATATAG
1 TTTTTAAAA-ATATATAATATAG
* *
1016315 TTTTGAAAACATATAATATATAGAG
1 TTTTTAAAA-ATAT-ATA-ATATAG
*
1016340 TTTTTGAAAATA
1 TTTTTAAAAATA
1016352 GTTTTTGAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
21 19 0.28
22 29 0.43
23 4 0.06
24 3 0.04
25 12 0.18
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (22 bp):
TTTTTAAAAATATATAATATAG
Found at i:1016356 original size:13 final size:13
Alignment explanation
Indices: 1016338--1016362 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1016328 TAATATATAG
1016338 AGTTTTTGAAAAT
1 AGTTTTTGAAAAT
1016351 AGTTTTTGAAAA
1 AGTTTTTGAAAA
1016363 CATAAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (13 bp):
AGTTTTTGAAAAT
Found at i:1016385 original size:41 final size:38
Alignment explanation
Indices: 1016311--1016387 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 38
1016301 AACATATTAT
*
1016311 ATAGTTTTGAAAACATATAATATATAGAGTTTTTGAAA
1 ATAGTTTTGAAAACATATAATATATAGAATTTTTGAAA
*
1016349 ATAGTTTTTGAAAACATAAATAATATATATAATTTTTGA
1 ATAG-TTTTGAAAACAT--ATAATATATAGAATTTTTGA
1016388 GAACATGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 4 0.12
39 12 0.35
41 18 0.53
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (38 bp):
ATAGTTTTGAAAACATATAATATATAGAATTTTTGAAA
Found at i:1016458 original size:19 final size:19
Alignment explanation
Indices: 1016434--1016473 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
1016424 ATACATATTA
* *
1016434 TTATTATTTCTTCTTTTAT
1 TTATTATTACTTATTTTAT
1016453 TTATTATTACTTATTTTAT
1 TTATTATTACTTATTTTAT
1016472 TT
1 TT
1016474 TGATTTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (19 bp):
TTATTATTACTTATTTTAT
Found at i:1017817 original size:17 final size:17
Alignment explanation
Indices: 1017795--1017827 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1017785 ATATTGTCCT
1017795 TTTATTT-TCTTTATTTA
1 TTTATTTAT-TTTATTTA
1017812 TTTATTTATTTTATTT
1 TTTATTTATTTTATTT
1017828 TGATGCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTATTTATTTTATTTA
Found at i:1018037 original size:21 final size:19
Alignment explanation
Indices: 1017997--1018038 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
1017987 AGTTCGTATG
*
1017997 AAATTTAAATTTTTATATT
1 AAATTTAAATTTTTAAATT
1018016 AAATTTATAATTTTTACAATT
1 AAATTTA-AATTTTTA-AATT
1018037 AA
1 AA
1018039 GAAAATCAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 8 0.40
21 5 0.25
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
AAATTTAAATTTTTAAATT
Found at i:1018860 original size:14 final size:16
Alignment explanation
Indices: 1018841--1018882 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
1018831 TTTAAAAATT
1018841 ATTT-AAATTT-TAAA
1 ATTTAAAATTTCTAAA
1018855 ATTTAAAATTTCTAAAAA
1 ATTTAAAATTTCT--AAA
1018873 ATTTAAAATT
1 ATTTAAAATT
1018883 AAATTACTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.17
15 6 0.25
16 1 0.04
18 13 0.54
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTTAAAATTTCTAAA
Found at i:1020133 original size:46 final size:46
Alignment explanation
Indices: 1020067--1020296 Score: 337
Period size: 46 Copynumber: 5.1 Consensus size: 46
1020057 TTATTAATTA
* * * **
1020067 ATTTTAGTTATAGCCT-CTTTCATGCCTTAATACATATGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
* *
1020112 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATTCGTTCATAC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
1020158 ATTTTAGTTA-GGACATCCTTTCATGCCTTAATGCATCCGTTCATGC
1 ATTTTAGTTATGG-CATCCTTTCATGCCTTAATGCATCCGTTCATGC
1020204 ATTTTAGTTATGGCATCC--T--TGCCTTAATGCATCCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
*
1020246 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCATTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
1020292 ATTTT
1 ATTTT
1020297 TGTCTTTTAT
Statistics
Matches: 169, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
42 41 0.24
44 2 0.01
45 16 0.09
46 108 0.64
47 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (46 bp):
ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
Found at i:1020270 original size:88 final size:90
Alignment explanation
Indices: 1020067--1020296 Score: 333
Period size: 88 Copynumber: 2.6 Consensus size: 90
1020057 TTATTAATTA
* * * **
1020067 ATTTTAGTTATAGCCT-CTTTCATGCCTTAATACATATGTTCATGCATTTTAGTTATGGCATCCT
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCC-
*
1020131 TTCATGCCTTAATGCATTCGTTCATAC
65 TT-ATGCCTTAATGCATCCGTTCATAC
1020158 ATTTTAGTTA-GGACATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCC
1 ATTTTAGTTATGG-CATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCC
*
1020222 -T-TGCCTTAATGCATCCGTTCATGC
65 TTATGCCTTAATGCATCCGTTCATAC
*
1020246 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCATTCATGCATTTT
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTT
1020297 TGTCTTTTAT
Statistics
Matches: 128, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
88 68 0.53
89 2 0.02
90 2 0.02
91 12 0.09
92 44 0.34
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (90 bp):
ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCT
TATGCCTTAATGCATCCGTTCATAC
Found at i:1020536 original size:55 final size:55
Alignment explanation
Indices: 1020470--1020724 Score: 300
Period size: 55 Copynumber: 4.6 Consensus size: 55
1020460 ATTTCATCTC
* * * * * * *
1020470 CTTATTATGAATTTCTT-ATGTTTACACATATAGTTCCCATATGGAAATTCACACA
1 CTTAGTATGAATTTCTTAAT-TTTGCACACATAGTGCCCATACGAAAATTCATACA
* * * * * *
1020525 CTTAGTATGAATTTATTAGTTTTGCATACGTAGTGCCCATACGGAATTTCATACA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
1020580 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
*
1020635 C--AATATGAATTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
** * *
1020688 CTTAGTATGGTTTTTTTAATTTGTTGCACACAAAGTG
1 CTTAGTATGAATTTCTTAA-TT-TTGCACACATAGTG
1020725 TCATTCGGTA
Statistics
Matches: 172, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
53 52 0.30
55 104 0.60
56 3 0.02
57 13 0.08
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (55 bp):
CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
Found at i:1020686 original size:108 final size:109
Alignment explanation
Indices: 1020470--1020724 Score: 298
Period size: 108 Copynumber: 2.3 Consensus size: 109
1020460 ATTTCATCTC
* * * * * * *
1020470 CTTATTATGAATTTCTT-ATGTTTACACATATAGTTCCCATATGGAAATTCACACACTTAGTATG
1 CTTAGTATGAATTTCTTAAT-TTTGCACACATAGTGCCCATACGAAAATTCACACAC-TAATATG
* * * * *
1020534 AATTTATTAGTTTTGCATACGTAGTGCCCATACGGAATTTCATACA
64 AATTTATTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
*
1020580 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCATACAC-AATATGAA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCACACACTAATATGAA
*
1020644 TTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
66 TTTATTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
** * *
1020688 CTTAGTATGGTTTTTTTAATTTGTTGCACACAAAGTG
1 CTTAGTATGAATTTCTTAA-TT-TTGCACACATAGTG
1020725 TCATTCGGTA
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
108 61 0.49
109 2 0.02
110 59 0.48
111 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (109 bp):
CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGAAAATTCACACACTAATATGAA
TTTATTAATTTTGCACACATAGTGCCCATACGAAAATTCATACA
Found at i:1021264 original size:42 final size:42
Alignment explanation
Indices: 1021200--1021289 Score: 153
Period size: 42 Copynumber: 2.1 Consensus size: 42
1021190 TGATTGCATC
* *
1021200 AGTATCGGTACTACTCAGTTGTTTCATCCTATTTTAGCCTAT
1 AGTATCAGTACTACTCAGTTGTTTCATCCCATTTTAGCCTAT
*
1021242 AGTATCAGTACTACTCATTTGTTTCATCCCATTTTAGCCTAT
1 AGTATCAGTACTACTCAGTTGTTTCATCCCATTTTAGCCTAT
1021284 AGTATC
1 AGTATC
1021290 GGTATTGTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.23, C:0.22, G:0.12, T:0.42
Consensus pattern (42 bp):
AGTATCAGTACTACTCAGTTGTTTCATCCCATTTTAGCCTAT
Found at i:1025214 original size:45 final size:44
Alignment explanation
Indices: 1025117--1025219 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 44
1025107 AAACCCGACG
* * *
1025117 GATGCATCGATGCACATTCAAGGAGTGCATCAGTGCATCTTCAT
1 GATGTATCGATGCACATTCAAGGAGTGCATCAGTACACCTTCAT
*
1025161 GATGTATCGATGCACATTCATAGG-GATGCAT-AGATACACCTTTAT
1 GATGTATCGATGCACATTCA-AGGAG-TGCATCAG-TACACCTTCAT
1025206 -AGTGTATCGATGCA
1 GA-TGTATCGATGCA
1025220 TTATGCACAA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
44 23 0.45
45 28 0.55
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
GATGTATCGATGCACATTCAAGGAGTGCATCAGTACACCTTCAT
Found at i:1031083 original size:64 final size:65
Alignment explanation
Indices: 1031013--1031197 Score: 198
Period size: 64 Copynumber: 2.9 Consensus size: 65
1031003 ACTAAGGATG
** * *
1031013 CATCGATGCATAAAATGTATTCGATGTTTCAA-ACAAAC-TTGGGTGCATCGATGCATGGTCTTT
1 CATCGATGCATAAAATCAATTCGATGTTTCAATA-AAACATAGAGTGCATCGATGCATGGTCTTT
1031076 T
65 T
* * * * *
1031077 CATCGATGCATAAAATCAATTCGATGTTTTAATAATACATAGAGTGCATCGATGCATGGTATGTG
1 CATCGATGCATAAAATCAATTCGATGTTTCAATAAAACATAGAGTGCATCGATGCATGGTCTTTT
* * * * *
1031142 CATCGGTACACAAAAGCTATTCGATG-TTCAATTAAAACA-AGAGTGCATCGATGCAT
1 CATCGATGCATAAAATCAATTCGATGTTTCAA-TAAAACATAGAGTGCATCGATGCAT
1031198 TGATTTATAC
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
64 53 0.52
65 49 0.48
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (65 bp):
CATCGATGCATAAAATCAATTCGATGTTTCAATAAAACATAGAGTGCATCGATGCATGGTCTTTT
Found at i:1031164 original size:65 final size:64
Alignment explanation
Indices: 1031055--1031197 Score: 171
Period size: 65 Copynumber: 2.2 Consensus size: 64
1031045 ACAAACTTGG
* * * * * * * *
1031055 GTGCATCGATGCATGGTCTTTTCATCGATGCATAAAATCAATTCGATGTTTTAA-TAATACATAG
1 GTGCATCGATGCATGGTATGTGCATCGATACACAAAAGCAATTCGATG-TTCAATTAAAACA-AG
1031119 A
64 A
* *
1031120 GTGCATCGATGCATGGTATGTGCATCGGTACACAAAAGCTATTCGATGTTCAATTAAAACAAGA
1 GTGCATCGATGCATGGTATGTGCATCGATACACAAAAGCAATTCGATGTTCAATTAAAACAAGA
1031184 GTGCATCGATGCAT
1 GTGCATCGATGCAT
1031198 TGATTTATAC
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
64 21 0.31
65 46 0.69
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATGGTATGTGCATCGATACACAAAAGCAATTCGATGTTCAATTAAAACAAGA
Found at i:1031216 original size:65 final size:65
Alignment explanation
Indices: 1031095--1031217 Score: 151
Period size: 65 Copynumber: 1.9 Consensus size: 65
1031085 CATAAAATCA
* * * * * *
1031095 ATTCGATGTTTTAATAATACATAGAGTGCATCGATGCATGGTATGTGCATCGGTACACAAAAGCT
1 ATTCGATGTTTCAATAAAACATAGAGTGCATCGATGCATGATATATACAACGGTACACAAAAGCT
*
1031160 ATTCGATG-TTCAATTAAAACA-AGAGTGCATCGATGCATTGATTTATACAACGGTACAC
1 ATTCGATGTTTCAA-TAAAACATAGAGTGCATCGATGCA-TGATATATACAACGGTACAC
1031218 TTACCTGAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
64 20 0.41
65 29 0.59
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (65 bp):
ATTCGATGTTTCAATAAAACATAGAGTGCATCGATGCATGATATATACAACGGTACACAAAAGCT
Found at i:1031572 original size:13 final size:13
Alignment explanation
Indices: 1031554--1031592 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
1031544 GTCATAAATC
*
1031554 TATGACGTGCATT
1 TATGACGCGCATT
1031567 TATGACGCGCATT
1 TATGACGCGCATT
*
1031580 TATGCCGCGCATT
1 TATGACGCGCATT
1031593 AATGGCGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (13 bp):
TATGACGCGCATT
Found at i:1031817 original size:89 final size:84
Alignment explanation
Indices: 1031617--1031867 Score: 351
Period size: 85 Copynumber: 2.9 Consensus size: 84
1031607 AGTGTGATTG
1031617 AAGCCCCCGTCATAAATTAAGATGACACACATTTGTGCGTCATAAATTTATGACACGCATGTATG
1 AAGCCCCCGTCATAAATT-AGATGACACACATTTGTGCGTCATAAATTTATGACACGCATGTATG
*
1031682 ACTTACATTGCGCATCATTG
65 ACTTACATTGCGCATCATTA
*
1031702 AAGCCCCCGTCATAAATTAAGATGACACACATTTGTGCGTCATAAATTAATTTATGACACGTATG
1 AAGCCCCCGTCATAAATT-AGATGACACACATTTGTGCGTCAT--A--AATTTATGACACGCATG
*
1031767 TATGACTTACATTGCGCTTCATTA
61 TATGACTTACATTGCGCATCATTA
* * * * *
1031791 AAGCCCTCGTCATAAATCT-GCTTGACATACATTTGTGTGTCATAAATTTATGACACGCATATAT
1 AAGCCCCCGTCATAAAT-TAG-ATGACACACATTTGTGCGTCATAAATTTATGACACGCATGTAT
1031855 GACTTACATTGCG
64 GACTTACATTGCG
1031868 TGTCATTGAT
Statistics
Matches: 151, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
85 74 0.49
87 2 0.01
88 1 0.01
89 73 0.48
90 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (84 bp):
AAGCCCCCGTCATAAATTAGATGACACACATTTGTGCGTCATAAATTTATGACACGCATGTATGA
CTTACATTGCGCATCATTA
Found at i:1035244 original size:14 final size:14
Alignment explanation
Indices: 1035225--1035252 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1035215 TCTGACTTAT
1035225 TTACTACATTAGAA
1 TTACTACATTAGAA
1035239 TTACTACATTAGAA
1 TTACTACATTAGAA
1035253 ACATTAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
TTACTACATTAGAA
Found at i:1037809 original size:15 final size:15
Alignment explanation
Indices: 1037783--1037838 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
1037773 GATGCTTTCT
1037783 TTTTCCTTCTTTGACG
1 TTTT-CTTCTTTGACG
* *
1037799 TTTTTTTCTTTGATG
1 TTTTCTTCTTTGACG
*
1037814 TTTTCTTCTTAGACG
1 TTTTCTTCTTTGACG
*
1037829 TTGTCTTCTT
1 TTTTCTTCTT
1037839 ACCCCATGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.07, C:0.18, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTTCTTCTTTGACG
Found at i:1042456 original size:32 final size:32
Alignment explanation
Indices: 1042396--1042456 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
1042386 ACCAAACATG
** * *
1042396 TTTTCTAATTTAAAAAAAGAGAATGAAAACTA
1 TTTTCTAAAATAAAAAAAGAAAACGAAAACTA
*
1042428 TTTTCTAAAATAAAAATAGAAAACGAAAA
1 TTTTCTAAAATAAAAAAAGAAAACGAAAA
1042457 GCAGAATTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.28
Consensus pattern (32 bp):
TTTTCTAAAATAAAAAAAGAAAACGAAAACTA
Found at i:1044421 original size:4 final size:4
Alignment explanation
Indices: 1044407--1044441 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
1044397 AATTATTATT
*
1044407 TTTA CTTA TTTA TTTA TTTA TTTA -TTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1044442 AATAAGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:1044687 original size:14 final size:15
Alignment explanation
Indices: 1044668--1044696 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1044658 ACTACTTCGG
1044668 TTATAATATA-ATTT
1 TTATAATATATATTT
1044682 TTATAATATATATTT
1 TTATAATATATATTT
1044697 ATTTTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATAATATATATTT
Found at i:1044722 original size:29 final size:29
Alignment explanation
Indices: 1044681--1044736 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
1044671 TAATATAATT
* *
1044681 TTTATAATATATATTTATTTTAAAAATGA
1 TTTAAAATATATATTTATTATAAAAATGA
*
1044710 TTTAAAATTTATATTTATTATAAAAAT
1 TTTAAAATATATATTTATTATAAAAAT
1044737 ATCATAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
TTTAAAATATATATTTATTATAAAAATGA
Found at i:1045881 original size:16 final size:17
Alignment explanation
Indices: 1045840--1045876 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
1045830 AGTTTGGTCG
*
1045840 AATAAAATTTAAAGAAA
1 AATAAAATTAAAAGAAA
1045857 AATAAAATTAAAAGAAA
1 AATAAAATTAAAAGAAA
1045874 AAT
1 AAT
1045877 GAATTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (17 bp):
AATAAAATTAAAAGAAA
Found at i:1046826 original size:21 final size:23
Alignment explanation
Indices: 1046806--1046848 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
1046796 TATATTTAAT
1046806 TTAC-AAATAAT-TTAAA-ATAA
1 TTACTAAATAATATTAAACATAA
1046826 TTACTAAATAATATTAAACATAA
1 TTACTAAATAATATTAAACATAA
1046849 ATATTACTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 7 0.35
22 5 0.25
23 4 0.20
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (23 bp):
TTACTAAATAATATTAAACATAA
Found at i:1048258 original size:19 final size:20
Alignment explanation
Indices: 1048224--1048318 Score: 77
Period size: 21 Copynumber: 4.7 Consensus size: 20
1048214 GGGCCTATAA
*
1048224 AATTGTAATAAT-TAATTAC
1 AATTATAATAATATAATTAC
*
1048243 AATTAT-ATAATATAATTAT
1 AATTATAATAATATAATTAC
* *
1048262 AATTATAATAATATTTATTAT
1 AATTATAATAATA-TAATTAC
* * *
1048283 ATTTATTATAATAATAATATAT
1 AATTATAATAAT-ATAAT-TAC
*
1048305 AAATATAATAATAT
1 AATTATAATAATAT
1048319 TTATTCTATA
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
18 5 0.08
19 17 0.27
20 6 0.10
21 21 0.34
22 13 0.21
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (20 bp):
AATTATAATAATATAATTAC
Found at i:1048262 original size:6 final size:6
Alignment explanation
Indices: 1048236--1048347 Score: 54
Period size: 6 Copynumber: 18.7 Consensus size: 6
1048226 TTGTAATAAT
* * * *
1048236 TAATTA CAATTA TATAATA TAATTA TAATTA TAATAA TATTTA TTATATT-
1 TAATTA TAATTA TA-ATTA TAATTA TAATTA TAATTA TAATTA -TA-ATTA
* * * * *
1048286 T-ATTA TAATAA TAATATA TAAATA TAATAA T-ATT- TATTCTA TAATAA
1 TAATTA TAATTA TAAT-TA TAATTA TAATTA TAATTA TAAT-TA TAATTA
*
1048333 TAA-TA TTATTA TAAT
1 TAATTA TAATTA TAAT
1048348 AATATAAACG
Statistics
Matches: 76, Mismatches: 20, Indels: 20
0.66 0.17 0.17
Matches are distributed among these distances:
4 4 0.05
5 7 0.09
6 49 0.64
7 14 0.18
8 2 0.03
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (6 bp):
TAATTA
Found at i:1048300 original size:36 final size:37
Alignment explanation
Indices: 1048253--1048354 Score: 102
Period size: 39 Copynumber: 2.7 Consensus size: 37
1048243 AATTATATAA
* *
1048253 TATAATTATAATTATAATAATAT-TTATTATATT-TAT
1 TATAATAATAATTATAATAATATAATATT-TATTCTAT
1048289 TATAATAATAATATATAA-ATATAATAATATTTATTCTAT
1 TATAATAATAAT-TATAATA-AT-ATAATATTTATTCTAT
*
1048328 AATAATAATATTATTATAATAATATAA
1 TATAATAATA--ATTATAATAATATAA
1048355 ACGTTACTCG
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
36 12 0.22
37 7 0.13
38 6 0.11
39 20 0.36
40 7 0.13
41 3 0.05
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (37 bp):
TATAATAATAATTATAATAATATAATATTTATTCTAT
Found at i:1048587 original size:36 final size:37
Alignment explanation
Indices: 1048523--1048605 Score: 141
Period size: 36 Copynumber: 2.3 Consensus size: 37
1048513 TTATCTGATC
* *
1048523 TTGCTTCACTACTCTTTTTGTTATGGCTTGATTTGCA
1 TTGCTTCACTACTCTTTTTGTGAAGGCTTGATTTGCA
1048560 TTGCTTCACTACTC-TTTTGTGAAGGCTTGATTTGCA
1 TTGCTTCACTACTCTTTTTGTGAAGGCTTGATTTGCA
1048596 TTGCTTCACT
1 TTGCTTCACT
1048606 CTTGTGTGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 30 0.68
37 14 0.32
ACGTcount: A:0.14, C:0.20, G:0.17, T:0.48
Consensus pattern (37 bp):
TTGCTTCACTACTCTTTTTGTGAAGGCTTGATTTGCA
Found at i:1048614 original size:33 final size:35
Alignment explanation
Indices: 1048523--1048624 Score: 118
Period size: 36 Copynumber: 2.9 Consensus size: 35
1048513 TTATCTGATC
* * *
1048523 TTGCTTCACTACTCTTTTTGTTATGGCTTGATTTGCA
1 TTGCTT-ACTACTC-TTGTGTGAAGGCTTGATTTGCA
*
1048560 TTGCTTCACTACTCTTTTGTGAAGGCTTGATTTGCA
1 TTGCTT-ACTACTCTTGTGTGAAGGCTTGATTTGCA
*
1048596 TTGCTT-C-ACTCTTGTGTGAAGACTTGATT
1 TTGCTTACTACTCTTGTGTGAAGGCTTGATT
1048625 GACTTGAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
33 20 0.33
34 1 0.02
36 26 0.43
37 14 0.23
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.47
Consensus pattern (35 bp):
TTGCTTACTACTCTTGTGTGAAGGCTTGATTTGCA
Found at i:1055913 original size:20 final size:21
Alignment explanation
Indices: 1055888--1055943 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
1055878 GGATTTTAGG
1055888 CCAAGAGTATCGATACTTT-C
1 CCAAGAGTATCGATACTTTAC
* ***
1055908 CCAAGATTATATTTACTTTAC
1 CCAAGAGTATCGATACTTTAC
1055929 CCAAGAGTATCGATA
1 CCAAGAGTATCGATA
1055944 TTTTTTAAGA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.32
Consensus pattern (21 bp):
CCAAGAGTATCGATACTTTAC
Found at i:1056048 original size:20 final size:20
Alignment explanation
Indices: 1056023--1056077 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
1056013 TATTTTACCT
1056023 TAGGGTATCGTTACTGCAAG
1 TAGGGTATCGTTACTGCAAG
*
1056043 TAGGGTATCATTACTGCAAG
1 TAGGGTATCGTTACTGCAAG
* *
1056063 TAGAGTATCGATACT
1 TAGGGTATCGTTACT
1056078 ATTCACTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (20 bp):
TAGGGTATCGTTACTGCAAG
Found at i:1058589 original size:13 final size:14
Alignment explanation
Indices: 1058559--1058591 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
1058549 CACACAATAG
1058559 AAAATAATTTTCTA
1 AAAATAATTTTCTA
1058573 AAAATAATTTTCTA
1 AAAATAATTTTCTA
1058587 AAAAT
1 AAAAT
1058592 TCTTTCGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AAAATAATTTTCTA
Found at i:1059049 original size:2 final size:2
Alignment explanation
Indices: 1059042--1059069 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1059032 CCCCATTAAC
1059042 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1059070 TCTGCATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1061886 original size:3 final size:3
Alignment explanation
Indices: 1061880--1061940 Score: 113
Period size: 3 Copynumber: 20.0 Consensus size: 3
1061870 GATGATGATG
1061880 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
1061926 ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA
1061941 TGATTATGTA
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 54 0.95
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:1065562 original size:21 final size:21
Alignment explanation
Indices: 1065537--1065579 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1065527 TTTGGGTTGT
* *
1065537 GCACGCTGGGGTGCGGTTGGG
1 GCACGCTAGGGTGCGGCTGGG
*
1065558 GCACGCTAGGGTGTGGCTGGG
1 GCACGCTAGGGTGCGGCTGGG
1065579 G
1 G
1065580 TGCAATGGCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.19, G:0.56, T:0.19
Consensus pattern (21 bp):
GCACGCTAGGGTGCGGCTGGG
Found at i:1067522 original size:25 final size:25
Alignment explanation
Indices: 1067466--1067522 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
1067456 TCCTATATGG
* * *
1067466 CATGATTGTCTGTATGTTTTTACTG
1 CATGATTGTATGTATGCTTTTACTA
*
1067491 CACGATTGTATGTATGCTTTTA-TAA
1 CATGATTGTATGTATGCTTTTACT-A
1067516 CATGATT
1 CATGATT
1067523 TAGTCTATTG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.47
Consensus pattern (25 bp):
CATGATTGTATGTATGCTTTTACTA
Found at i:1073809 original size:24 final size:23
Alignment explanation
Indices: 1073782--1073868 Score: 66
Period size: 24 Copynumber: 3.7 Consensus size: 23
1073772 TAGAATACAA
*
1073782 AACATAATTCAAATCATATATCAG
1 AACAGAATTCAAATCA-ATATCAG
* ** *
1073806 AACAGAATCCAGGTCAAGAATCAG
1 AACAGAATTCAAATCAA-TATCAG
* * *
1073830 AACAGATTTCAGATCAGATGTCAG
1 AACAGAATTCAAATCA-ATATCAG
*
1073854 AACATAATTCAAATC
1 AACAGAATTCAAATC
1073869 GGAAATAAGA
Statistics
Matches: 48, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
23 1 0.02
24 46 0.96
25 1 0.02
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.23
Consensus pattern (23 bp):
AACAGAATTCAAATCAATATCAG
Found at i:1077073 original size:23 final size:26
Alignment explanation
Indices: 1077036--1077088 Score: 85
Period size: 23 Copynumber: 2.2 Consensus size: 26
1077026 TTCTCTTGTG
1077036 ATCATGTATCTCATATCAC-T-TCAT
1 ATCATGTATCTCATATCACATGTCAT
1077060 ATCATGT-TCTCATATCACATGTCAT
1 ATCATGTATCTCATATCACATGTCAT
1077085 ATCA
1 ATCA
1077089 CATATCATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 11 0.41
24 8 0.30
25 8 0.30
ACGTcount: A:0.30, C:0.25, G:0.06, T:0.40
Consensus pattern (26 bp):
ATCATGTATCTCATATCACATGTCAT
Found at i:1077086 original size:12 final size:12
Alignment explanation
Indices: 1077069--1077104 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
1077059 TATCATGTTC
*
1077069 TCATATCACATG
1 TCATATCACATA
1077081 TCATATCACATA
1 TCATATCACATA
1077093 TCATATCACATA
1 TCATATCACATA
1077105 AACATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.39, C:0.25, G:0.03, T:0.33
Consensus pattern (12 bp):
TCATATCACATA
Found at i:1083759 original size:15 final size:15
Alignment explanation
Indices: 1083739--1083772 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
1083729 CCGTAGGACC
1083739 ACTACATCCCGAAGG
1 ACTACATCCCGAAGG
*
1083754 ACTACATCCTGAAGG
1 ACTACATCCCGAAGG
1083769 ACTA
1 ACTA
1083773 TTATACCCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.29, G:0.18, T:0.18
Consensus pattern (15 bp):
ACTACATCCCGAAGG
Found at i:1083880 original size:23 final size:26
Alignment explanation
Indices: 1083843--1083911 Score: 85
Period size: 24 Copynumber: 2.8 Consensus size: 26
1083833 TTCTCTTGTG
1083843 ATCATGTATCTCATATCAC-T-TCAT
1 ATCATGTATCTCATATCACATGTCAT
1083867 ATCATGT-TCTCATATCACATGTCAT
1 ATCATGTATCTCATATCACATGTCAT
* *
1083892 ATCA--CATATCATATCACATG
1 ATCATGTATCTCATATCACATG
1083912 AACATATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.28
24 21 0.52
25 8 0.20
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.38
Consensus pattern (26 bp):
ATCATGTATCTCATATCACATGTCAT
Found at i:1083893 original size:12 final size:12
Alignment explanation
Indices: 1083876--1083911 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
1083866 TATCATGTTC
1083876 TCATATCACATG
1 TCATATCACATG
*
1083888 TCATATCACATA
1 TCATATCACATG
1083900 TCATATCACATG
1 TCATATCACATG
1083912 AACATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (12 bp):
TCATATCACATG
Found at i:1089557 original size:20 final size:20
Alignment explanation
Indices: 1089514--1089559 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
1089504 CAAAGTCAAT
* *
1089514 GGTCAACGGTCAACGGGTCG
1 GGTCAACGGTCAACGAGTCA
1089534 GGTCAACGAGTCAAC-AGTCA
1 GGTCAACG-GTCAACGAGTCA
1089554 GGTCAA
1 GGTCAA
1089560 ACCGGGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.28, C:0.24, G:0.33, T:0.15
Consensus pattern (20 bp):
GGTCAACGGTCAACGAGTCA
Found at i:1091205 original size:18 final size:19
Alignment explanation
Indices: 1091180--1091231 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
1091170 GTTTGCAAAA
1091180 AAGAAAAAGAAATGAGAGT
1 AAGAAAAAGAAATGAGAGT
* *
1091199 -TGAAAAAGACATTGAGAGT
1 AAGAAAAAGA-AATGAGAGT
1091218 GAAGAAAAAGAAAT
1 -AAGAAAAAGAAAT
1091232 TGGATTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 8 0.31
19 8 0.31
20 2 0.08
21 8 0.31
ACGTcount: A:0.60, C:0.02, G:0.25, T:0.13
Consensus pattern (19 bp):
AAGAAAAAGAAATGAGAGT
Done.