genome.fa.s8944.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008944.1 Hibiscus syriacus cultivar Beakdansim tig00112265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190011

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3818--3897	35	2.2	37	91	4	128	27	3	37	31	1.74
8529--8553	11	2.3	11	100	0	50	40	8	36	16	1.77
8574--8627	24	2.2	26	84	12	71	57	9	16	16	1.64
15479--15535	30	1.9	30	85	7	80	0	14	8	77	0.99
15736--15761	10	2.6	10	100	0	52	50	0	30	19	1.48
19235--19339	50	2.3	44	81	15	108	31	0	13	54	1.45
20104--20178	8	8.8	8	87	12	105	85	12	2	0	0.70
20131--20178	1	48.0	1	78	0	51	89	10	0	0	0.48
20104--20178	28	2.9	25	90	7	107	85	12	2	0	0.70
32788--32867	35	2.2	37	88	4	119	31	36	3	28	1.75
34615--34657	20	2.2	20	87	4	61	34	9	6	48	1.62
37649--37728	35	2.2	37	91	4	128	31	37	3	27	1.74
38103--38152	24	2.2	21	86	10	64	84	6	10	0	0.79
38178--38219	15	2.9	15	79	13	52	78	2	16	2	0.96
38373--38422	24	2.0	25	85	11	68	20	16	0	64	1.30
42322--42386	33	2.0	32	82	8	78	33	1	32	32	1.67
46140--46214	38	2.0	37	82	7	89	62	0	22	14	1.31
46767--46831	33	2.0	32	82	8	78	33	1	32	32	1.67
48215--48294	35	2.2	37	91	4	128	31	37	3	27	1.74
48743--48784	15	2.9	15	79	13	52	78	2	16	2	0.96
48938--48987	24	2.0	25	85	11	68	20	16	0	64	1.30
52286--52365	35	2.2	37	91	4	128	31	37	3	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54989--55030	20	2.2	19	83	8	50	33	9	7	50	1.62
57001--57043	20	2.2	20	87	4	61	34	9	6	48	1.62
63858--63904	18	2.6	17	83	9	67	4	8	8	78	1.07
70334--70371	16	2.4	16	95	0	67	68	7	13	10	1.39
84919--84961	20	2.2	20	87	4	61	34	9	6	48	1.62
86827--86869	19	2.2	20	91	4	70	37	9	6	46	1.63
91441--91484	10	4.5	10	80	5	54	0	4	11	84	0.77
98183--98262	11	6.7	11	71	23	56	31	35	3	30	1.75
98183--98262	35	2.2	37	86	4	110	31	35	3	30	1.75
106417--106447	15	2.1	15	100	0	62	45	22	19	12	1.84
111781--111858	35	2.2	37	90	4	124	30	37	3	28	1.75
112307--112348	15	2.9	15	79	13	52	78	2	16	2	0.96
119647--119692	25	1.9	23	83	16	58	6	17	4	71	1.24
122153--122232	35	2.2	37	91	4	128	31	37	3	27	1.74
126217--126296	35	2.2	37	91	4	128	31	37	3	27	1.74
132394--132440	14	3.1	15	75	12	51	72	4	19	4	1.18
136331--136410	35	2.2	37	86	4	110	31	35	3	30	1.75
139819--139870	21	2.6	21	90	6	81	32	13	7	46	1.72
141222--141264	4	10.2	4	80	9	50	76	0	23	0	0.78
141230--141264	13	2.7	13	90	0	61	74	0	25	0	0.82
145678--145720	15	2.8	15	80	13	52	79	2	18	0	0.85
148025--148159	28	4.9	28	67	12	100	40	10	19	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147985--148159	81	2.2	80	88	3	262	38	10	21	29	1.87
152004--152078	38	2.0	37	82	7	89	14	22	0	62	1.31
156460--156495	10	3.6	10	96	0	63	75	11	13	0	1.06
162461--162498	15	2.4	16	86	4	51	13	13	5	68	1.37
164490--164544	24	2.3	24	93	0	92	16	5	9	69	1.34
165803--165856	28	1.9	28	96	0	99	44	11	18	25	1.83
165776--165937	81	2.0	80	90	3	254	39	10	20	29	1.86
165882--165936	28	2.0	28	88	0	83	45	12	10	30	1.77
171463--171507	23	2.0	23	100	0	90	17	4	11	66	1.38
171463--171515	23	2.3	23	93	0	88	15	7	9	67	1.39
172764--172817	28	1.9	28	96	0	99	44	11	18	25	1.83
172737--172898	81	2.0	80	90	3	254	40	10	20	29	1.86
172843--172897	28	2.0	28	88	0	83	47	12	10	29	1.76
179038--179090	23	2.2	24	90	3	81	9	16	11	62	1.54
187341--187390	25	2.0	25	84	7	66	8	16	16	60	1.58

Tables:   1

The End!