genome.fa.s8945.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008945.1 Hibiscus syriacus cultivar Beakdansim tig00112266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  308463

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7942--7998	25	2.3	25	90	0	87	14	8	8	68	1.39
9260--9313	28	1.9	28	96	0	99	44	11	18	25	1.83
9233--9394	81	2.0	80	91	3	263	39	10	20	29	1.86
9339--9393	28	2.0	28	92	0	92	45	12	12	29	1.79
14935--14989	25	2.2	25	93	0	92	14	7	9	69	1.36
16252--16305	28	1.9	28	96	0	99	44	11	18	25	1.83
16225--16388	83	2.0	80	89	3	247	40	10	20	29	1.85
22603--22661	23	2.5	24	80	2	75	8	18	10	62	1.51
25851--26838	497	2.0	500	95	1	1786	37	10	25	26	1.88
30992--31041	25	2.0	25	84	7	66	8	16	16	60	1.58
34762--34807	22	2.0	22	83	4	56	8	13	19	58	1.60
37423--37470	20	2.4	20	80	13	55	0	16	4	79	0.89
39710--39749	19	2.1	19	85	4	53	20	12	0	67	1.22
41988--42020	16	2.1	16	88	11	50	81	3	15	0	0.80
41985--42027	22	2.0	22	85	0	59	81	2	13	2	0.89
49476--49526	19	2.6	19	90	3	66	0	7	13	78	0.96
49483--49526	19	2.3	19	96	0	79	0	6	11	81	0.86
55817--55909	48	1.9	48	80	4	107	19	20	24	35	1.96
56389--56420	12	2.7	12	90	0	55	75	12	12	0	1.06
56393--56445	19	2.6	21	82	8	65	73	15	11	0	1.09
72369--72408	15	2.6	15	88	4	53	57	0	30	12	1.36
74812--74838	14	1.9	14	100	0	54	37	0	40	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77737--77777	22	1.9	21	90	5	64	34	36	2	26	1.70
78288--78331	10	4.6	10	88	8	65	86	0	9	4	0.70
78271--78334	10	6.8	10	77	12	64	85	1	9	3	0.76
78271--78334	18	3.4	18	81	12	76	85	1	9	3	0.76
79312--79354	22	2.0	22	86	9	61	62	11	11	13	1.54
81705--81862	77	2.0	78	97	1	300	32	15	10	41	1.80
82032--82072	22	1.9	21	90	5	64	34	36	2	26	1.70
82562--82617	27	2.1	27	86	0	76	89	1	5	3	0.65
82562--82617	1	56.0	1	83	0	58	89	1	5	3	0.65
86666--86724	11	5.1	11	80	11	64	84	1	8	5	0.82
90318--90358	22	1.9	21	90	5	64	34	36	2	26	1.70
91763--91818	8	7.0	8	74	22	55	85	10	3	0	0.71
91764--91819	10	5.6	10	79	8	69	87	8	3	0	0.65
98493--98557	12	5.0	12	76	22	60	83	1	10	4	0.87
98493--98558	17	4.0	16	78	9	62	81	1	12	4	0.90
105280--105310	5	6.2	5	100	0	62	80	0	19	0	0.71
110931--110983	24	2.2	24	82	0	70	7	15	16	60	1.57
115756--115843	35	2.5	36	88	1	133	30	36	3	29	1.74
131195--131236	20	2.1	20	95	0	75	0	2	14	83	0.75
136051--136095	22	2.2	20	88	8	63	31	37	2	28	1.69
138339--138389	19	2.6	20	90	3	77	43	5	15	35	1.71
139282--139341	30	2.0	31	83	9	79	56	10	6	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142023--142085	33	1.9	33	93	0	108	30	26	19	23	1.98
145873--145925	5	9.8	5	76	15	52	3	15	1	79	0.96
145853--145912	23	2.5	23	84	10	68	6	18	3	71	1.22
146971--147013	16	2.8	16	96	3	79	23	25	23	27	2.00
148869--148905	19	1.9	19	94	0	65	43	5	13	37	1.67
154071--154110	19	2.0	20	90	4	64	65	0	15	20	1.28
156106--156206	35	3.1	33	81	8	91	30	35	1	31	1.69
160543--160612	35	1.9	37	85	5	99	34	32	4	28	1.77
160583--160651	33	2.1	33	83	5	86	30	36	1	31	1.67
164232--164271	19	2.0	20	95	4	73	62	0	15	22	1.32
164682--164733	19	2.6	21	90	6	81	46	5	13	34	1.67
174345--174378	16	2.1	16	100	0	68	38	38	5	17	1.74
179502--179549	19	2.5	20	86	3	62	45	6	14	33	1.70
182446--182497	15	3.2	16	75	24	56	67	0	17	15	1.24
183483--183533	19	2.6	20	87	3	68	45	5	15	33	1.71
191972--192009	14	2.7	14	100	0	76	78	7	7	5	1.07
192090--192118	15	2.0	15	93	6	51	75	3	20	0	0.94
193496--193523	9	3.1	9	100	0	56	32	10	10	46	1.73
197900--197941	19	2.2	19	86	4	57	14	23	2	59	1.47
206537--206603	34	1.9	36	87	6	102	29	1	35	32	1.67
210556--210597	13	2.9	14	82	13	50	2	16	2	78	0.96
211032--211099	35	1.9	36	93	3	120	29	2	36	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214695--214738	20	2.1	21	87	4	63	88	6	4	0	0.62
214706--214746	18	2.3	18	91	0	64	82	9	7	0	0.83
226356--226458	33	3.1	33	81	8	93	30	35	1	32	1.69
229873--229913	20	2.0	21	90	4	66	19	17	0	63	1.31
229877--229934	24	2.4	24	76	18	59	18	17	0	63	1.31
235651--235694	21	2.0	21	86	4	61	38	15	6	38	1.75
236201--236244	22	2.0	21	86	4	61	25	2	34	38	1.68
239934--240002	16	4.1	16	69	27	54	2	18	1	76	0.98
239945--239969	8	3.1	8	100	0	50	0	24	0	76	0.80
240314--240357	22	2.0	21	86	4	61	25	2	34	38	1.68
242138--242180	6	7.2	6	79	10	52	79	2	16	2	0.95
242138--242180	11	3.6	12	78	12	52	79	2	16	2	0.95
242618--242660	22	2.0	22	82	17	54	62	4	18	13	1.48
243561--243611	19	2.6	20	87	3	68	45	5	15	33	1.71
252069--252108	21	1.9	21	85	10	55	65	0	15	20	1.28
252131--252171	22	1.9	21	90	5	64	26	2	36	34	1.70
258839--258906	35	1.9	36	90	3	111	32	36	2	27	1.72
263309--263361	22	2.3	23	87	3	72	35	35	1	26	1.68
265032--265059	14	2.0	14	100	0	56	35	0	42	21	1.53
265393--265435	20	2.2	20	87	4	61	48	6	11	32	1.66
270139--270179	22	1.9	21	90	5	64	36	36	0	26	1.57
270515--270565	6	8.3	6	77	12	50	78	1	13	5	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270482--270565	23	3.4	25	77	16	77	77	3	13	5	1.08
279958--280001	21	2.0	21	87	12	63	15	22	0	61	1.34
280205--280234	14	2.1	14	93	0	51	43	13	13	30	1.82
283161--283211	20	2.6	20	87	3	68	39	13	5	41	1.69
284042--284093	5	10.0	5	76	15	52	75	1	21	1	1.00
288912--288953	19	2.4	17	80	11	57	61	14	14	9	1.55
291700--291729	13	2.4	12	94	5	51	43	0	30	26	1.55
294034--294084	20	2.6	20	90	3	77	35	15	5	43	1.71
294440--294480	17	2.4	17	95	0	73	21	39	4	34	1.75
294938--294962	11	2.3	11	100	0	50	84	0	16	0	0.63
297145--297183	20	2.0	20	90	5	62	30	12	10	46	1.75
298147--298197	19	2.6	20	90	3	77	33	17	5	43	1.73
298549--298589	17	2.4	17	91	0	64	24	36	4	34	1.77
298562--298608	23	2.0	24	83	8	60	23	36	4	36	1.75

Tables:   1

The End!