genome.fa.s8949.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008949.1 Hibiscus syriacus cultivar Beakdansim tig00112275_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81017

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102--250	39	3.8	38	83	7	176	32	25	20	22	1.98
64--252	20	9.6	20	78	9	183	34	25	20	19	1.96
61--253	78	2.5	78	80	5	212	34	25	19	19	1.96
631--700	33	2.2	33	92	2	115	10	22	18	48	1.78
818--872	14	3.6	14	73	21	56	41	23	25	9	1.83
797--888	33	2.8	33	88	0	112	42	23	23	9	1.84
884--981	19	5.7	19	68	22	72	10	22	23	43	1.83
889--1003	33	3.5	33	91	0	194	9	22	21	46	1.80
939--995	14	3.7	14	79	20	69	8	26	24	40	1.84
2684--3148	92	5.1	92	95	3	852	22	12	18	45	1.84
2684--3147	180	2.5	183	96	2	864	22	12	18	45	1.84
3192--3319	19	7.3	19	72	17	107	45	28	17	9	1.79
3228--3319	33	2.8	32	88	6	132	45	27	18	8	1.78
3315--3449	19	7.6	19	75	16	128	11	19	23	45	1.82
3337--3393	14	3.7	14	77	20	60	10	21	22	45	1.82
3320--3412	33	2.8	33	95	0	168	10	20	21	47	1.80
5324--5359	14	2.6	14	95	0	63	33	0	22	44	1.53
5465--5564	19	5.6	18	82	14	136	43	18	24	15	1.87
5571--5836	52	5.0	52	92	5	444	15	21	16	46	1.83
5571--5864	33	8.5	35	83	14	246	14	20	18	46	1.84
5593--5864	19	15.4	19	81	16	345	14	20	18	47	1.83
5571--5797	89	2.6	91	86	12	309	15	20	17	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5571--5864	70	4.2	74	81	15	296	14	20	18	46	1.84
5571--5870	52	5.7	53	87	6	337	14	20	18	47	1.83
8326--8372	24	2.0	24	87	8	69	38	21	14	25	1.92
9052--9420	20	18.5	20	86	5	451	20	18	26	34	1.96
13090--13584	113	4.3	113	82	7	550	27	18	13	40	1.88
13091--13625	226	2.3	230	81	5	620	28	18	14	39	1.89
14763--14803	21	2.0	21	95	0	73	60	7	7	24	1.48
15167--15214	10	4.8	10	80	10	53	16	8	0	75	1.04
18334--18386	24	2.2	23	78	15	54	64	1	3	30	1.22
18355--18408	28	2.0	27	88	3	81	59	0	5	35	1.21
20514--20544	3	10.3	3	100	0	62	64	0	0	35	0.94
23737--23872	43	3.2	43	64	22	113	45	11	6	36	1.66
36340--36373	14	2.4	14	100	0	68	17	0	32	50	1.47
37518--37552	18	1.9	18	88	0	52	17	17	14	51	1.77
43322--43381	23	2.6	23	91	0	102	25	31	25	18	1.97
43992--44142	67	2.3	66	89	2	221	14	25	27	31	1.95
50200--50259	23	2.6	23	91	0	102	25	31	25	18	1.97
50866--51016	67	2.3	66	89	2	221	14	25	27	31	1.95
51769--51825	20	2.7	20	75	8	51	33	26	15	24	1.95
65493--65531	2	19.5	2	100	0	78	48	0	0	51	1.00
70862--70892	16	1.9	16	100	0	62	38	38	16	6	1.74
74877--74909	16	2.0	17	88	5	50	30	6	30	33	1.82

Tables:   1

The End!