Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000895.1 Hibiscus syriacus cultivar Beakdansim tig00001758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69209

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
158--226
23
3.0
23
80
0
84
28
26
24
20
1.99
7615--7683
23
3.0
23
80
0
84
28
23
24
23
1.99
12201--12232
15
2.1
15
100
0
64
28
6
6
59
1.46
13151--13215
2
32.5
2
100
0
130
50
0
0
49
1.00
14767--14798
2
16.0
2
100
0
64
50
0
0
50
1.00
21403--21427
11
2.3
11
100
0
50
44
20
8
28
1.79
27014--27104
23
4.0
23
88
0
119
26
25
27
20
1.99
27315--27383
30
2.3
30
87
5
95
33
23
4
39
1.74
35588--35719
24
5.5
24
86
3
167
25
12
19
42
1.87
37456--37491
17
2.1
17
94
0
63
25
30
33
11
1.90
38660--38693
16
2.1
16
94
0
59
32
8
26
32
1.87
39443--39475
15
2.1
16
88
5
50
51
15
24
9
1.72
46128--46152
5
5.0
5
100
0
50
60
0
0
40
0.97
46217--46252
13
2.7
13
86
4
54
41
2
0
55
1.14
46205--46470
36
7.5
35
77
14
185
44
5
4
44
1.49
46842--48033
80
14.8
80
83
4
1435
25
18
22
33
1.97
46853--48033
162
7.3
162
85
2
1515
25
18
22
33
1.97
46853--48021
488
2.4
481
85
3
1565
25
18
22
33
1.97
47999--48060
27
2.3
27
100
0
124
24
20
22
32
1.98
47927--48140
107
2.0
106
84
2
277
25
20
22
32
1.98
53033--53059
14
1.9
14
100
0
54
51
0
3
44
1.19
54537--54838
37
8.5
36
75
14
186
44
5
4
45
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66341--66385
18
2.5
18
85
0
54
44
8
24
22
1.81
67429--67461
15
2.2
15
94
0
57
54
0
0
45
0.99

Tables:   1

The End!