genome.fa.s8952.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008952.1 Hibiscus syriacus cultivar Beakdansim tig00112280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63771

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8247--8314	21	3.3	21	77	6	68	44	17	20	17	1.87
8309--8360	20	2.6	20	87	6	70	26	25	19	28	1.98
8914--8958	19	2.4	19	88	0	63	44	26	17	11	1.82
8954--9066	20	6.1	19	76	13	92	13	23	20	42	1.87
11125--11191	21	3.2	21	66	6	55	23	35	20	19	1.95
11069--11191	42	2.9	42	80	4	106	22	36	17	23	1.94
12547--12582	14	2.6	14	95	0	63	30	0	25	44	1.54
12765--12957	33	5.8	33	93	2	334	13	23	19	43	1.87
12852--12939	14	5.6	14	71	23	68	11	23	19	45	1.83
16562--16619	20	2.9	20	92	0	89	37	22	20	18	1.94
16642--16715	19	4.5	16	83	16	66	13	20	18	47	1.82
16638--16705	19	3.8	19	87	12	101	13	22	17	47	1.82
16619--16733	52	2.2	52	82	0	131	19	21	20	38	1.94
18721--18787	19	3.5	19	83	4	89	37	23	23	14	1.93
18776--18833	14	3.9	14	72	16	53	48	24	17	10	1.78
18760--18838	32	2.4	33	91	2	124	46	22	18	11	1.81
18719--18819	19	5.6	18	71	17	66	42	22	21	12	1.87
18845--18940	19	5.6	17	72	21	78	11	19	22	45	1.82
18867--18924	14	3.9	14	79	16	71	8	17	25	48	1.75
18850--18940	32	2.8	33	94	3	166	10	18	23	47	1.80
18925--18979	20	2.8	19	83	8	65	16	23	23	36	1.94
19452--19496	18	2.5	18	85	0	63	15	15	42	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20813--20850	20	1.9	20	88	0	58	50	21	15	13	1.78
21114--21157	22	2.0	22	90	0	70	18	13	45	22	1.84
21325--21420	20	4.6	22	71	12	69	22	16	21	38	1.93
21325--21422	41	2.4	41	84	0	133	22	16	21	39	1.92
21347--21481	41	3.3	41	81	4	130	20	21	20	37	1.94
21408--21500	20	4.6	20	78	4	96	18	24	18	38	1.92
21408--21503	41	2.3	41	98	0	183	18	23	17	39	1.92
27144--27214	33	2.2	33	92	2	117	43	16	8	30	1.78
27209--27250	21	2.0	21	85	0	57	52	7	9	30	1.61
37257--37316	22	2.6	22	82	10	59	18	26	3	51	1.61
46612--46688	29	2.7	29	95	0	136	14	35	25	24	1.93
46735--46781	14	3.4	14	84	0	58	10	34	31	23	1.89
50906--50932	14	1.9	14	100	0	54	88	0	11	0	0.50
52702--52737	2	18.0	2	100	0	72	50	0	0	50	1.00
58466--58509	2	22.0	2	95	0	79	47	2	0	50	1.13
60874--60910	2	18.5	2	100	0	74	51	0	0	48	1.00

Tables:   1

The End!