Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008955.1 Hibiscus syriacus cultivar Beakdansim tig00112285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4658001
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 16 of 23
Found at i:3118819 original size:23 final size:23
Alignment explanation
Indices: 3118766--3118824 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
3118756 ATATCTTATA
* *
3118766 TGGCACTACGATGTAATTCTACG
1 TGGCACTTCGGTGTAATTCTACG
* *
3118789 CGGTACTTCGGTGTAATTCTACG
1 TGGCACTTCGGTGTAATTCTACG
*
3118812 TGGCACTTTGGTG
1 TGGCACTTCGGTG
3118825 CATTTATACG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (23 bp):
TGGCACTTCGGTGTAATTCTACG
Found at i:3125616 original size:23 final size:23
Alignment explanation
Indices: 3125590--3125639 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
3125580 GGCACTACGT
3125590 TGCAATTCTACGCGGCACATCGG
1 TGCAATTCTACGCGGCACATCGG
* * *
3125613 TGCAATTCTACGTGGTACTTCGG
1 TGCAATTCTACGCGGCACATCGG
3125636 TGCA
1 TGCA
3125640 TTTATACGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.20, C:0.26, G:0.26, T:0.28
Consensus pattern (23 bp):
TGCAATTCTACGCGGCACATCGG
Found at i:3131816 original size:19 final size:20
Alignment explanation
Indices: 3131774--3131811 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3131764 CCCCCTTTGA
*
3131774 AGGGGAACCGATCCCCCCAC
1 AGGGGAACCGATACCCCCAC
*
3131794 AGGGGAATCGATACCCCC
1 AGGGGAACCGATACCCCC
3131812 TAGGGTTCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.39, G:0.26, T:0.08
Consensus pattern (20 bp):
AGGGGAACCGATACCCCCAC
Found at i:3138732 original size:16 final size:16
Alignment explanation
Indices: 3138711--3138752 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
3138701 AAAATCGAGA
*
3138711 AAACATACATCAAGAC
1 AAACATACATCAACAC
3138727 AAACATACATCAACAC
1 AAACATACATCAACAC
*
3138743 ATACATACAT
1 AAACATACAT
3138753 GACACATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.55, C:0.26, G:0.02, T:0.17
Consensus pattern (16 bp):
AAACATACATCAACAC
Found at i:3139154 original size:36 final size:35
Alignment explanation
Indices: 3139071--3139198 Score: 105
Period size: 36 Copynumber: 3.5 Consensus size: 35
3139061 TTTGAGGGTG
* * * *
3139071 TTTTTCTCAAAACAAAATTGTGACTTGCATGAGAC-
1 TTTTTCTCAAAAC-AAATTTTGTCTCGCTTGAGACA
* *
3139106 TTTTTATAAAAACAAATTTTGTCTCGCTTGAGACAA
1 TTTTTCTCAAAACAAATTTTGTCTCGCTTGAGAC-A
* * * *
3139142 TTTTTCTCAAAACAAATTATATCTCACTTGAAACA
1 TTTTTCTCAAAACAAATTTTGTCTCGCTTGAGACA
*
3139177 GTTTCTCTCGAAATACAAATTT
1 -TTTTTCTC-AAA-ACAAATTT
3139199 CAAGGTTGAT
Statistics
Matches: 74, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
34 17 0.23
35 12 0.16
36 35 0.47
37 3 0.04
38 7 0.09
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (35 bp):
TTTTTCTCAAAACAAATTTTGTCTCGCTTGAGACA
Found at i:3139604 original size:66 final size:65
Alignment explanation
Indices: 3139327--3139749 Score: 386
Period size: 66 Copynumber: 6.4 Consensus size: 65
3139317 AATTGGCAAA
*
3139327 CTTTGAGATTGTTTCTCTTG-AACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA-CAA
1 CTTTGAGATTGTTTCTCTTGAAACAAA-TTTGTCTCTCTTGAGACAGTTTCTCATGAAACACCAA
3139390 T
65 T
* *
3139391 CTTTGAG-TCT-TTATCT-TTTAAACAAAAATTTGTCTCTCTTGAGACAGTCTCT-ATTGAAACA
1 CTTTGAGAT-TGTT-TCTCTTGAAAC--AAATTTGTCTCTCTTGAGACAGTTTCTCA-TGAAACA
3139452 -CAAT
61 CCAAT
* * * * * *
3139456 CTTTGAGTATT-TTTCTCTTAAAACAAAATATTGTCTTTCTTAAGACATTTTCTCTTGAAATAAA
1 CTTTGAG-ATTGTTTCTCTTGAAAC-AAAT-TTGTCTCTCTTGAGACAGTTTCTCATG--A-AAC
3139520 ACC-AT
60 ACCAAT
* *
3139525 CTTTGAG-TATGTTTCTCTTGAAACAAATCTTGTTTCTCTTGAGACAATTTCTCATGAAACACCA
1 CTTTGAGAT-TGTTTCTCTTGAAACAAAT-TTGTCTCTCTTGAGACAGTTTCTCATGAAACACCA
*
3139589 AC
64 AT
* * * *
3139591 CTTTGAGATTGTTTCCCTTGAAAAAAAATTTGTCTCCCTTGAGACAATTTCTCATGAAACACCAA
1 CTTTGAGATTGTTTCTCTTG-AAACAAATTTGTCTCTCTTGAGACAGTTTCTCATGAAACACCAA
3139656 T
65 T
* * * * * *
3139657 CTTTGAGATAGTTTCCCTTGAAA-AGAATTTTGTCTCTCTTGAGACAGCTTCTCTTGAAGCATCA
1 CTTTGAGATTGTTTCTCTTGAAACA-AA-TTTGTCTCTCTTGAGACAGTTTCTCATGAAACACCA
3139721 A-
64 AT
*
3139722 CTTTGAG-TATGTTTCTCTTGAAATAAAT
1 CTTTGAGAT-TGTTTCTCTTGAAACAAAT
3139750 CCATAAAGAT
Statistics
Matches: 302, Mismatches: 33, Indels: 48
0.79 0.09 0.13
Matches are distributed among these distances:
63 5 0.02
64 17 0.06
65 80 0.26
66 137 0.45
67 10 0.03
68 28 0.09
69 24 0.08
70 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (65 bp):
CTTTGAGATTGTTTCTCTTGAAACAAATTTGTCTCTCTTGAGACAGTTTCTCATGAAACACCAAT
Found at i:3139995 original size:130 final size:130
Alignment explanation
Indices: 3139753--3140103 Score: 404
Period size: 132 Copynumber: 2.7 Consensus size: 130
3139743 AATAAATCCA
3139753 TAAAGATGGTATATCATCCTCATTGCGTAGGAACCGTGTCATCC-CCTGACCAGACCTCCTCATC
1 TAAAGATGGTAT-TCATCCTCATTGCGTAGGAACCGTGTCATCCACC-GACCAGACCTCCTCATC
* * * * *
3139817 ACGTA-GAGCCGTGTCACCCTTAGGTAAGCAGTCATCCTCATCATGTAGGAATTATGTTATCA-T
64 ACGTAGGAGTCGTGTCACCCTTAGATAACCAGTCATCCTCATCACGTAGGAA-CATGTTATCACT
*
3139880 CTC
128 CCC
** *
3139883 TAAAGATGGTATGTCATCCTCATCACATAGGAACCGTGTCATCCACCGACCAGACCTCCTCATCA
1 TAAAGATGGTAT-TCATCCTCATTGCGTAGGAACCGTGTCATCCACCGACCAGACCTCCTCATCA
* * ** * * *
3139948 CATAGGAGTCGTGTCACCCCTAGATAACCAGTTGT-CTTATCGCGTAGGAACGTGTTATCACCCT
65 CGTAGGAGTCGTGTCACCCTTAGATAACCAGTCATCCTCATCACGTAGGAACATGTTATCA--CT
3140012 CCC
128 CCC
** * * * * *
3140015 TAAAGATGGCCTACAATCCTTATTGTGTAAGAACCGTGTCATCCACCGACCAGATCTCCTCATCA
1 TAAAGATGGTATTC-ATCCTCATTGCGTAGGAACCGTGTCATCCACCGACCAGACCTCCTCATCA
3140080 CGTAGGAGTCGTGTCACCCTTAGA
65 CGTAGGAGTCGTGTCACCCTTAGA
3140104 CGACTAGACC
Statistics
Matches: 186, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
129 8 0.04
130 73 0.39
131 27 0.15
132 78 0.42
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (130 bp):
TAAAGATGGTATTCATCCTCATTGCGTAGGAACCGTGTCATCCACCGACCAGACCTCCTCATCAC
GTAGGAGTCGTGTCACCCTTAGATAACCAGTCATCCTCATCACGTAGGAACATGTTATCACTCCC
Found at i:3141538 original size:28 final size:28
Alignment explanation
Indices: 3141485--3141538 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
3141475 TTAATGTTTG
* *
3141485 GTCCTTTATGTTTTTTTAGTTCATTTCA
1 GTCCTTTATATTTTTATAGTTCATTTCA
*
3141513 GTCCTTTATATTATTTATGGTT-ATTT
1 GTCCTTTATATT-TTTATAGTTCATTT
3141539 TCATTTCTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 15 0.68
29 7 0.32
ACGTcount: A:0.17, C:0.11, G:0.11, T:0.61
Consensus pattern (28 bp):
GTCCTTTATATTTTTATAGTTCATTTCA
Found at i:3141636 original size:30 final size:30
Alignment explanation
Indices: 3141602--3141749 Score: 188
Period size: 30 Copynumber: 4.8 Consensus size: 30
3141592 GTAATTACTG
* *
3141602 TTTAGCCCTTTAAATTTATGTTTTTACTAT
1 TTTAGTCCTTTAAATTTATATTTTTACTAT
*
3141632 TTTAGTCCTTTAAATTTCTATTTTTACTAT
1 TTTAGTCCTTTAAATTTATATTTTTACTAT
* * *
3141662 TTTAGTCCTTTAAATTTCTTTTTTTTTTTCTAT
1 TTTAGTCCTTTAAA--T-TTATATTTTTACTAT
* *
3141695 TTTAGTCCTTTAAATTTTTATTTTTGCTAT
1 TTTAGTCCTTTAAATTTATATTTTTACTAT
*
3141725 TTTAGTCCTTTAAATTTATGTTTTT
1 TTTAGTCCTTTAAATTTATATTTTT
3141750 TTTGCTATTT
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
30 77 0.73
31 1 0.01
32 1 0.01
33 26 0.25
ACGTcount: A:0.20, C:0.11, G:0.05, T:0.63
Consensus pattern (30 bp):
TTTAGTCCTTTAAATTTATATTTTTACTAT
Found at i:3141701 original size:63 final size:63
Alignment explanation
Indices: 3141602--3141762 Score: 238
Period size: 63 Copynumber: 2.6 Consensus size: 63
3141592 GTAATTACTG
*
3141602 TTTAGCCCTTTAAATTTATG---TTTTTACTATTTTAGTCCTTTAAATTTCTATTTTTACTAT
1 TTTAGTCCTTTAAATTTATGTTTTTTTTACTATTTTAGTCCTTTAAATTTCTATTTTTACTAT
* * * * *
3141662 TTTAGTCCTTTAAATTTCTTTTTTTTTTTCTATTTTAGTCCTTTAAATTTTTATTTTTGCTAT
1 TTTAGTCCTTTAAATTTATGTTTTTTTTACTATTTTAGTCCTTTAAATTTCTATTTTTACTAT
*
3141725 TTTAGTCCTTTAAATTTATGTTTTTTTTGCTATTTTAG
1 TTTAGTCCTTTAAATTTATGTTTTTTTTACTATTTTAG
3141763 CCTCTCAAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
60 17 0.19
63 72 0.81
ACGTcount: A:0.20, C:0.11, G:0.06, T:0.63
Consensus pattern (63 bp):
TTTAGTCCTTTAAATTTATGTTTTTTTTACTATTTTAGTCCTTTAAATTTCTATTTTTACTAT
Found at i:3141780 original size:33 final size:33
Alignment explanation
Indices: 3141602--3141786 Score: 183
Period size: 30 Copynumber: 5.8 Consensus size: 33
3141592 GTAATTACTG
* * *
3141602 TTTAGCCCTTTAAATTTATG---TTTTTACTAT
1 TTTAGTCCTTTAAATTTCTGTTTTTTTTGCTAT
* *
3141632 TTTAGTCCTTTAAATTTC---TATTTTTACTAT
1 TTTAGTCCTTTAAATTTCTGTTTTTTTTGCTAT
* *
3141662 TTTAGTCCTTTAAATTTCTTTTTTTTTTTCTAT
1 TTTAGTCCTTTAAATTTCTGTTTTTTTTGCTAT
*
3141695 TTTAGTCCTTTAAA-TT-T-TTATTTTTGCTAT
1 TTTAGTCCTTTAAATTTCTGTTTTTTTTGCTAT
*
3141725 TTTAGTCCTTTAAATTTATGTTTTTTTTGCTAT
1 TTTAGTCCTTTAAATTTCTGTTTTTTTTGCTAT
* *
3141758 TTTAG-CCTCTCAAGTTTCTGTTTTGTTTT
1 TTTAGTCCT-TTAAATTTCTGTTTT-TTTT
3141787 ATTTTGTTCC
Statistics
Matches: 135, Mismatches: 10, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
30 69 0.51
31 3 0.02
32 6 0.04
33 53 0.39
34 4 0.03
ACGTcount: A:0.18, C:0.12, G:0.07, T:0.62
Consensus pattern (33 bp):
TTTAGTCCTTTAAATTTCTGTTTTTTTTGCTAT
Found at i:3148793 original size:17 final size:17
Alignment explanation
Indices: 3148763--3148796 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
3148753 TATGTAAAAA
*
3148763 TTTATGTTTCTTTTATC
1 TTTATGTTTATTTTATC
*
3148780 TTTATTTTTATTTTATC
1 TTTATGTTTATTTTATC
3148797 AAATTATTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.09, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTATGTTTATTTTATC
Found at i:3153571 original size:10 final size:10
Alignment explanation
Indices: 3153558--3153612 Score: 69
Period size: 9 Copynumber: 5.5 Consensus size: 10
3153548 ACAAAACATG
3153558 TAAAAAATAA
1 TAAAAAATAA
3153568 TAAAATAATAA
1 TAAAA-AATAA
3153579 TAAAAAATAA
1 TAAAAAATAA
3153589 T-AAAAATAA
1 TAAAAAATAA
*
3153598 -ACAAAATGAA
1 TAAAAAAT-AA
3153608 TAAAA
1 TAAAA
3153613 TGTTAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
9 13 0.33
10 13 0.33
11 13 0.33
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (10 bp):
TAAAAAATAA
Found at i:3153583 original size:19 final size:20
Alignment explanation
Indices: 3153561--3153613 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
3153551 AAACATGTAA
*
3153561 AAAATAATAAAATAATAATAA
1 AAAATAATAAAATAATAA-AC
3153582 AAAATAAT-AAA-AATAAAC
1 AAAATAATAAAATAATAAAC
3153600 AAAATGAATAAAAT
1 AAAAT-AATAAAAT
3153614 GTTAAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 6 0.21
19 8 0.29
20 6 0.21
21 8 0.29
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (20 bp):
AAAATAATAAAATAATAAAC
Found at i:3153584 original size:21 final size:21
Alignment explanation
Indices: 3153558--3153613 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
3153548 ACAAAACATG
3153558 TAAAAAATAATAAAATAATAA
1 TAAAAAATAATAAAATAATAA
3153579 TAAAAAATAAT-AAA-AATAA
1 TAAAAAATAATAAAATAATAA
*
3153598 -ACAAAATGAATAAAAT
1 TAAAAAAT-AATAAAAT
3153614 GTTAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 6 0.19
19 8 0.26
20 6 0.19
21 11 0.35
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (21 bp):
TAAAAAATAATAAAATAATAA
Found at i:3153587 original size:13 final size:14
Alignment explanation
Indices: 3153563--3153598 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
3153553 ACATGTAAAA
3153563 AATAATAAAATAAT
1 AATAATAAAATAAT
3153577 AATAA-AAAATAAT
1 AATAATAAAATAAT
*
3153590 AAAAATAAA
1 AATAATAAA
3153599 CAAAATGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AATAATAAAATAAT
Found at i:3153622 original size:19 final size:17
Alignment explanation
Indices: 3153542--3153622 Score: 54
Period size: 19 Copynumber: 4.2 Consensus size: 17
3153532 GAAAAAATGG
*
3153542 AAAATAACAAAACATGTAA
1 AAAATAATAAAA-AT-TAA
3153561 AAAATAATAAAATAATAATAA
1 AAAATAAT-AAA-AAT--TAA
*
3153582 AAAATAATAAAAATAAA
1 AAAATAATAAAAATTAA
*
3153599 CAAAATGAATAAAATGTTAA
1 -AAAAT-AATAAAA-ATTAA
3153619 AAAA
1 AAAA
3153623 ACAAAGACAC
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
17 2 0.04
18 5 0.10
19 21 0.41
20 11 0.22
21 12 0.24
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (17 bp):
AAAATAATAAAAATTAA
Found at i:3153688 original size:18 final size:17
Alignment explanation
Indices: 3153657--3153702 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
3153647 ATTAATGAAA
3153657 TAAAAAAATAAAAAAGG
1 TAAAAAAATAAAAAAGG
*
3153674 TAAAATAAATTAAAAAGG
1 TAAAA-AAATAAAAAAGG
3153692 -AATAAAAATAA
1 TAA-AAAAATAA
3153703 TATGTACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (17 bp):
TAAAAAAATAAAAAAGG
Found at i:3153829 original size:19 final size:18
Alignment explanation
Indices: 3153805--3153843 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
3153795 TATTAAGAAA
3153805 AAAATAATAGAAAAAAAAT
1 AAAATAA-AGAAAAAAAAT
* *
3153824 AAAATAAAGTAAAAATAT
1 AAAATAAAGAAAAAAAAT
3153842 AA
1 AA
3153844 TATATATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (18 bp):
AAAATAAAGAAAAAAAAT
Found at i:3153891 original size:49 final size:44
Alignment explanation
Indices: 3153806--3153895 Score: 103
Period size: 46 Copynumber: 2.0 Consensus size: 44
3153796 ATTAAGAAAA
*
3153806 AAATAATAGAAAAAAAATAAAATAAAGTAAAAATATAATATATAT
1 AAATAATAAAAAAAAAATAAAATAAAGTAAAAATAT-ATATATAT
*
3153851 AAATAAATAAAAACAAAAATAGAATATTAAG--AAAATATATATATA
1 AAAT-AATAAAAA-AAAAATA-AA-ATAAAGTAAAAATATATATATA
3153896 AAAACGTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
45 4 0.10
46 14 0.36
47 14 0.36
48 2 0.05
49 5 0.13
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (44 bp):
AAATAATAAAAAAAAAATAAAATAAAGTAAAAATATATATATAT
Found at i:3153968 original size:2 final size:2
Alignment explanation
Indices: 3153961--3154038 Score: 67
Period size: 2 Copynumber: 41.5 Consensus size: 2
3153951 ATATTAATAC
*
3153961 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AG AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
3154001 AT AA AT AA AT AA AT A- AT AT AA AT A- AA AT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3154039 GGACGAAATT
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
1 5 0.08
2 56 0.92
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (2 bp):
AT
Found at i:3153999 original size:31 final size:31
Alignment explanation
Indices: 3153961--3154038 Score: 83
Period size: 30 Copynumber: 2.6 Consensus size: 31
3153951 ATATTAATAC
*
3153961 ATATATATATATATATATATATAT-ATATAA
1 ATATATATATATATATATATAAATAATATAA
* *
3153991 GATATATATA-ATAAATAAATAAATAATATAA
1 -ATATATATATATATATATATAAATAATATAA
*
3154022 ATA-AAATATA-ATATATA
1 ATATATATATATATATATA
3154039 GGACGAAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
29 9 0.23
30 15 0.38
31 15 0.38
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (31 bp):
ATATATATATATATATATATAAATAATATAA
Found at i:3154029 original size:11 final size:12
Alignment explanation
Indices: 3153992--3154032 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
3153982 TATATATAAG
*
3153992 ATATATATAATA
1 ATATAAATAATA
3154004 A-ATAAATAAATA
1 ATATAAAT-AATA
3154016 ATATAAATAA-A
1 ATATAAATAATA
3154027 ATATAA
1 ATATAA
3154033 TATATAGGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 12 0.46
12 8 0.31
13 6 0.23
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:3156373 original size:67 final size:65
Alignment explanation
Indices: 3156257--3156437 Score: 226
Period size: 67 Copynumber: 2.8 Consensus size: 65
3156247 AAGATATCTG
* * **
3156257 TTGTTTCATGA-AAA-TGGTCTCAAGGGAAACAAAATTTTGTTTTAAGGGAAATAAATTTGAAGA
1 TTGTTTCAAGAGAAACT-GTCTCAAGGGAGACAAAA-TTTGTTTTAAGGGAAATAAATTCAAAGA
3156320 TTT
64 -TT
*
3156323 TGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAGAT
1 T-TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGAT
3156388 T
65 T
* * *
3156389 TTGTTTCAAGGGAAACTGTCTCAA--GAGACGAAATTTGTTTCAAGGGAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAA
3156438 CTGTCTCAAG
Statistics
Matches: 103, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
63 22 0.21
65 22 0.21
66 4 0.04
67 34 0.33
68 20 0.19
69 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (65 bp):
TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
Found at i:3156484 original size:37 final size:38
Alignment explanation
Indices: 3156383--3156474 Score: 149
Period size: 34 Copynumber: 2.6 Consensus size: 38
3156373 AATAAATTCA
3156383 AAGATTTTGTTTCAAGGGAAACTGTCTC-A-AGAGACG
1 AAGATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACG
3156419 AA-A-TTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC-
1 AAGATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACG
3156454 AAGATTTTGTTTCAAGGGAAA
1 AAGATTTTGTTTCAAGGGAAA
3156475 GTATTTCAAG
Statistics
Matches: 52, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
34 23 0.44
35 4 0.08
36 9 0.17
37 16 0.31
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (38 bp):
AAGATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACG
Found at i:3158071 original size:69 final size:69
Alignment explanation
Indices: 3157959--3158093 Score: 189
Period size: 69 Copynumber: 2.0 Consensus size: 69
3157949 CTCTCTCTTA
* * * *
3157959 ATGCTCTATGATCTTTGAGTGGAGTGACTCAATGATTTAGAAATGATTGTGCTTGATCAATCTCA
1 ATGCTCTATGATCTTCGAGTGAAGTGACTCAATGATTCAGAAATAATTGTGCTTGATCAATCTCA
3158024 TTTG
66 TTTG
** * * *
3158028 ATGCTCTATGATCTTCGAGTGAAGTGGTTCAGTGATTCGGAAATAATTGTGCTTGATCCATCTCA
1 ATGCTCTATGATCTTCGAGTGAAGTGACTCAATGATTCAGAAATAATTGTGCTTGATCAATCTCA
3158093 T
66 T
3158094 AGTTTGAATC
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
69 57 1.00
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (69 bp):
ATGCTCTATGATCTTCGAGTGAAGTGACTCAATGATTCAGAAATAATTGTGCTTGATCAATCTCA
TTTG
Found at i:3158191 original size:11 final size:12
Alignment explanation
Indices: 3158177--3158228 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
3158167 TTTTCTTTGC
3158177 TTTTTTTCTCTT
1 TTTTTTTCTCTT
3158189 TTTATTTTCTCTT
1 TTT-TTTTCTCTT
3158202 TGCTTTTTTCTC-T
1 T--TTTTTTCTCTT
*
3158215 CTTTTTTCTCTT
1 TTTTTTTCTCTT
3158227 TT
1 TT
3158229 CGTTCTGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
11 9 0.26
12 5 0.15
13 11 0.32
14 7 0.21
15 2 0.06
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTTTTCTCTT
Found at i:3158208 original size:27 final size:27
Alignment explanation
Indices: 3158165--3158227 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
3158155 TTTTTCTTCA
*
3158165 ATTTT-TCTTTGCTTTTTTTCTCTTTTT
1 ATTTTCTCTTTGCTTTTTTTCTC-TCTT
3158192 ATTTTCTCTTTGC-TTTTTTCTCTCTT
1 ATTTTCTCTTTGCTTTTTTTCTCTCTT
3158218 -TTTTCTCTTT
1 ATTTTCTCTTT
3158228 TCGTTCTGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 10 0.29
26 3 0.09
27 14 0.41
28 7 0.21
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.75
Consensus pattern (27 bp):
ATTTTCTCTTTGCTTTTTTTCTCTCTT
Found at i:3158210 original size:28 final size:28
Alignment explanation
Indices: 3158165--3158220 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
3158155 TTTTTCTTCA
3158165 ATTTTTCTTTGCTTTTTT-TCTCTTTTT
1 ATTTTTCTTTGCTTTTTTCTCTCTTTTT
3158192 ATTTTCTCTTTGCTTTTTTCTCTCTTTTT
1 ATTTT-TCTTTGCTTTTTTCTCTCTTTTT
3158221 TCTCTTTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 5 0.19
28 13 0.48
29 9 0.33
ACGTcount: A:0.04, C:0.18, G:0.04, T:0.75
Consensus pattern (28 bp):
ATTTTTCTTTGCTTTTTTCTCTCTTTTT
Found at i:3160690 original size:18 final size:17
Alignment explanation
Indices: 3160659--3160692 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
3160649 ATTAATGGAG
3160659 TAAAAAAATAAAAAAGA
1 TAAAAAAATAAAAAAGA
*
3160676 TAAAAGAAATTAAAAAG
1 TAAAA-AAATAAAAAAG
3160693 GAATAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (17 bp):
TAAAAAAATAAAAAAGA
Found at i:3160961 original size:2 final size:2
Alignment explanation
Indices: 3160954--3160995 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
3160944 TTAATACATC
3160954 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3160996 ATAAAAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3161050 original size:21 final size:21
Alignment explanation
Indices: 3160983--3161051 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
3160973 ATATATATAT
* *
3160983 ATATATATATATAATAAAAATA
1 ATATATAAATA-AATAAAAAGA
*
3161005 ATAATATAAATAAA-AAAAAGG
1 AT-ATATAAATAAATAAAAAGA
3161026 ATATAGTAAATAAATAAAAA-A
1 ATATA-TAAATAAATAAAAAGA
3161047 ATATA
1 ATATA
3161052 ATTAAAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 3 0.08
21 20 0.50
22 9 0.22
23 8 0.20
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (21 bp):
ATATATAAATAAATAAAAAGA
Found at i:3161057 original size:14 final size:14
Alignment explanation
Indices: 3161035--3161065 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
3161025 GATATAGTAA
3161035 ATAAATAAAAAAAT
1 ATAAATAAAAAAAT
*
3161049 ATAATTAAAAAAAT
1 ATAAATAAAAAAAT
3161063 ATA
1 ATA
3161066 TATAGGGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAAAAT
Found at i:3161069 original size:39 final size:40
Alignment explanation
Indices: 3160983--3161070 Score: 103
Period size: 39 Copynumber: 2.2 Consensus size: 40
3160973 ATATATATAT
*
3160983 ATATATATA-TATAATAAAAATAATAATATAAATAAAAAA
1 ATATATATAGTATAATAAAAATAAAAATATAAATAAAAAA
* *
3161022 A-AGGATATAGTA-AATAAATAA-AAAAATATAATTAAAAAA
1 ATA-TATATAGTATAATAAA-AATAAAAATATAAATAAAAAA
3161061 ATATATATAG
1 ATATATATAG
3161071 GGGACGAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
38 1 0.02
39 35 0.85
40 5 0.12
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (40 bp):
ATATATATAGTATAATAAAAATAAAAATATAAATAAAAAA
Found at i:3162538 original size:30 final size:30
Alignment explanation
Indices: 3162504--3162560 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
3162494 TCATCATTAA
* *
3162504 AAATTTAATGATGTTGTTGATTTATCATCG
1 AAATTTAATGATGTTATTGATGTATCATCG
3162534 AAATTTAATGATGTTATTGATGTATCA
1 AAATTTAATGATGTTATTGATGTATCA
3162561 CTATAAGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.46
Consensus pattern (30 bp):
AAATTTAATGATGTTATTGATGTATCATCG
Found at i:3163950 original size:38 final size:38
Alignment explanation
Indices: 3163899--3163975 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
3163889 GGCAAAAATT
3163899 GCATATGCTACTGTTTAGAAAAAGATATGTAGAGAAGG
1 GCATATGCTACTGTTTAGAAAAAGATATGTAGAGAAGG
*
3163937 GCATATGCTACTGTTTAGAAAAAGATATGTAGAGTAGG
1 GCATATGCTACTGTTTAGAAAAAGATATGTAGAGAAGG
3163975 G
1 G
3163976 ATGCTTAATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (38 bp):
GCATATGCTACTGTTTAGAAAAAGATATGTAGAGAAGG
Found at i:3163993 original size:22 final size:22
Alignment explanation
Indices: 3163965--3164010 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
3163955 AAAAAGATAT
3163965 GTAGAGTAG-GGATGCTTAATGA
1 GTAGAGTAGCGG-TGCTTAATGA
*
3163987 GTAGAGTAGCGGTGTTTAATGA
1 GTAGAGTAGCGGTGCTTAATGA
3164009 GT
1 GT
3164011 TGAACAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.28, C:0.04, G:0.37, T:0.30
Consensus pattern (22 bp):
GTAGAGTAGCGGTGCTTAATGA
Found at i:3164584 original size:31 final size:30
Alignment explanation
Indices: 3164539--3164658 Score: 156
Period size: 31 Copynumber: 4.0 Consensus size: 30
3164529 AGCAACGAGT
* *
3164539 TGAGTAGAGCAACAAGTTTTTTTAACGAGCA
1 TGAGTCGAGTAACAA-TTTTTTTAACGAGCA
3164570 TGAGTCGAGTAACAATTTTTTTTAACGAGCA
1 TGAGTCGAGTAACAA-TTTTTTTAACGAGCA
* *
3164601 CGAGTC-A--AACAAATTTTTCTAACGAGCA
1 TGAGTCGAGTAAC-AATTTTTTTAACGAGCA
3164629 TGAGTCGAGTAACAATTTTTTTAACGAGCA
1 TGAGTCGAGTAACAATTTTTTTAACGAGCA
3164659 CTAATCGAGC
Statistics
Matches: 78, Mismatches: 7, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
28 22 0.28
29 3 0.04
30 17 0.22
31 36 0.46
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (30 bp):
TGAGTCGAGTAACAATTTTTTTAACGAGCA
Found at i:3164618 original size:59 final size:58
Alignment explanation
Indices: 3164549--3164659 Score: 195
Period size: 59 Copynumber: 1.9 Consensus size: 58
3164539 TGAGTAGAGC
* *
3164549 AACAAGTTTTTTTAACGAGCATGAGTCGAGTAACAATTTTTTTTAACGAGCACGAGTCA
1 AACAAATTTTTCTAACGAGCATGAGTCGAGTAACAA-TTTTTTTAACGAGCACGAGTCA
3164608 AACAAATTTTTCTAACGAGCATGAGTCGAGTAACAATTTTTTTAACGAGCAC
1 AACAAATTTTTCTAACGAGCATGAGTCGAGTAACAATTTTTTTAACGAGCAC
3164660 TAATCGAGCA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
58 16 0.32
59 34 0.68
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (58 bp):
AACAAATTTTTCTAACGAGCATGAGTCGAGTAACAATTTTTTTAACGAGCACGAGTCA
Found at i:3172725 original size:24 final size:25
Alignment explanation
Indices: 3172678--3172731 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
3172668 TTTGTAAGCA
*
3172678 TATTGAATTATATATATGTGTGTGTT
1 TATTGAATTATATATA-GTATGTGTT
3172704 TATTGAATTATATATA-TATGTGTT
1 TATTGAATTATATATAGTATGTGTT
3172728 TATT
1 TATT
3172732 TGTAAGCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 11 0.41
26 16 0.59
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (25 bp):
TATTGAATTATATATAGTATGTGTT
Found at i:3176899 original size:32 final size:31
Alignment explanation
Indices: 3176824--3176920 Score: 131
Period size: 31 Copynumber: 3.1 Consensus size: 31
3176814 ATCCCAAAGG
* * * *
3176824 ACCTATCCATATGTTCTGAAGAACATAGGTA
1 ACCTGTCCATATGTCCCGAAGGACATAGGTA
3176855 ACCTGTCCATATGTCCCGAAGGACATAGGTA
1 ACCTGTCCATATGTCCCGAAGGACATAGGTA
* *
3176886 ATCCTGTCTATATGTCTCGAAGGACATAGGTA
1 A-CCTGTCCATATGTCCCGAAGGACATAGGTA
3176918 ACC
1 ACC
3176921 CTCGACTCTT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
31 30 0.51
32 29 0.49
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (31 bp):
ACCTGTCCATATGTCCCGAAGGACATAGGTA
Found at i:3183417 original size:11 final size:10
Alignment explanation
Indices: 3183391--3183421 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
3183381 CAAACGCAAG
3183391 AATTTTGAAA
1 AATTTTGAAA
3183401 AATTTTGAAA
1 AATTTTGAAA
3183411 AATTTTTGAAA
1 AA-TTTTGAAA
3183422 TTAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.60
11 8 0.40
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (10 bp):
AATTTTGAAA
Found at i:3186623 original size:11 final size:12
Alignment explanation
Indices: 3186599--3186645 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
3186589 ATTGATATCT
3186599 ATATAATCATAC
1 ATATAATCATAC
3186611 ATATAAT-ATAC
1 ATATAATCATAC
* *
3186622 ATATCATCATTC
1 ATATAATCATAC
* *
3186634 AAATTATCATAC
1 ATATAATCATAC
3186646 TCTAATCCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
11 10 0.34
12 19 0.66
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (12 bp):
ATATAATCATAC
Found at i:3191868 original size:166 final size:164
Alignment explanation
Indices: 3191554--3191883 Score: 633
Period size: 166 Copynumber: 2.0 Consensus size: 164
3191544 CTTCTCGTGC
3191554 GGCTTTAATTATCTCGACGCATAAGCCACCACTTTACCCTTTTGCATCAATACACATCCCAAGCC
1 GGCTTTAATTATCTCGACGCATAAGCCACCACTTTACCCTTTTGCATCAATACACATCCCAAGCC
3191619 ATTATAGGACGTCGCTATAAACCACATAGTTTTTACCAGACTCCGATGGAACTAATACTGGAGTT
66 ATTATAGGACGTCGCTATAAACCACATAGTTTTTACCAGACTCCGATGGAACTAATACTGGAGTT
3191684 TCTGTCAAAATCTTTTTCAACAAGTTAAAACTTT
131 TCTGTCAAAATCTTTTTCAACAAGTTAAAACTTT
*
3191718 GGCTTTAATTATCTCTACGCATAAGCCACCACTTTACCCTTTTGCATCAATACACATCCCAAGCC
1 GGCTTTAATTATCTCGACGCATAAGCCACCACTTTACCCTTTTGCATCAATACACATCCCAAGCC
3191783 ATTATAGGACGCGTCGCTATAAACCACATAGTTTTTACCAGACTCCGATGGAACTAATACTGGAG
66 ATTATAGGA--CGTCGCTATAAACCACATAGTTTTTACCAGACTCCGATGGAACTAATACTGGAG
3191848 TTTCTGTCAAAATCTTTTTCAACAAGTTAAAACTTT
129 TTTCTGTCAAAATCTTTTTCAACAAGTTAAAACTTT
3191884 CTTGACATTC
Statistics
Matches: 163, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
164 73 0.45
166 90 0.55
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (164 bp):
GGCTTTAATTATCTCGACGCATAAGCCACCACTTTACCCTTTTGCATCAATACACATCCCAAGCC
ATTATAGGACGTCGCTATAAACCACATAGTTTTTACCAGACTCCGATGGAACTAATACTGGAGTT
TCTGTCAAAATCTTTTTCAACAAGTTAAAACTTT
Found at i:3195052 original size:23 final size:23
Alignment explanation
Indices: 3195025--3195076 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
3195015 CTGAGTGGCA
* *
3195025 TATGAAATTTGTCCCTAAAGACC
1 TATGAAATATGTCCCGAAAGACC
*
3195048 TATG-AATATGTCCCGAAGGACC
1 TATGAAATATGTCCCGAAAGACC
3195070 TATGAAA
1 TATGAAA
3195077 CCCTCGACTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.76
23 6 0.24
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (23 bp):
TATGAAATATGTCCCGAAAGACC
Found at i:3195594 original size:97 final size:97
Alignment explanation
Indices: 3195428--3195622 Score: 390
Period size: 97 Copynumber: 2.0 Consensus size: 97
3195418 GAATTATACT
3195428 TATATTATGCACTCACCTTGGCCTCACTAAATTCCAAATCCACTTCAATGATTTCCTTTCTTTCG
1 TATATTATGCACTCACCTTGGCCTCACTAAATTCCAAATCCACTTCAATGATTTCCTTTCTTTCG
3195493 ATCAAATCTTAACTCGGTGGTTGTTTTGAAAC
66 ATCAAATCTTAACTCGGTGGTTGTTTTGAAAC
3195525 TATATTATGCACTCACCTTGGCCTCACTAAATTCCAAATCCACTTCAATGATTTCCTTTCTTTCG
1 TATATTATGCACTCACCTTGGCCTCACTAAATTCCAAATCCACTTCAATGATTTCCTTTCTTTCG
3195590 ATCAAATCTTAACTCGGTGGTTGTTTTGAAAC
66 ATCAAATCTTAACTCGGTGGTTGTTTTGAAAC
3195622 T
1 T
3195623 TGTTTGCTCT
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (97 bp):
TATATTATGCACTCACCTTGGCCTCACTAAATTCCAAATCCACTTCAATGATTTCCTTTCTTTCG
ATCAAATCTTAACTCGGTGGTTGTTTTGAAAC
Found at i:3197499 original size:16 final size:17
Alignment explanation
Indices: 3197478--3197515 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
3197468 TCTTAAAATT
3197478 TTTAA-ATTTTATATAA
1 TTTAATATTTTATATAA
*
3197494 TTTAAATATTTTATATAT
1 TTT-AATATTTTATATAA
3197512 TTTA
1 TTTA
3197516 TTAATAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 3 0.16
17 3 0.16
18 13 0.68
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTAATATTTTATATAA
Found at i:3204581 original size:20 final size:21
Alignment explanation
Indices: 3204556--3204607 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
3204546 TTTTCCCAAT
*
3204556 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
3204576 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
3204597 TCGCAATGCGA
1 TCGCAATGCGA
3204608 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:3204621 original size:20 final size:20
Alignment explanation
Indices: 3204596--3204709 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
3204586 AATTGGGAAA
3204596 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
3204616 ATCGCAATGCGATACAGACT
1 ATCGCAATGCGATACTGACT
* * *
3204636 CTCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
3204657 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
3204677 TTCGCAATACGATTCTGACT
1 ATCGCAATGCGATACTGACT
* *
3204697 TTCGCAACGCGAT
1 ATCGCAATGCGAT
3204710 TTACATAGCG
Statistics
Matches: 74, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
19 2 0.03
20 58 0.78
21 12 0.16
22 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:3204641 original size:61 final size:61
Alignment explanation
Indices: 3204593--3204709 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
3204583 GCGAATTGGG
* * * *
3204593 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACAGACTCTCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAATACGATACAGACTCTCGCAACGCGATAATAC
* * * *
3204654 AAAATCGCAACGAGATACTGACTTTCGCAATACGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAATACGATACAGACTCTCGCAACGCGAT
3204710 TTACATAGCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAATACGATACAGACTCTCGCAACGCGATAATAC
Found at i:3204905 original size:56 final size:55
Alignment explanation
Indices: 3204819--3204930 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 55
3204809 CATACCTCAA
3204819 ACCCAAAATCACAACACTCATCTCATCTCCATCTCTCACTCTCTACGGCGAAATCC
1 ACCCAAAATCACAACACTCATCTCATCTCCATCTCTCACTCTCTAC-GCGAAATCC
3204875 ACCCAAAATCACAACACTCATCTCATCTCCATCTCTCACTCTCTACGCGAAATCC
1 ACCCAAAATCACAACACTCATCTCATCTCCATCTCTCACTCTCTACGCGAAATCC
3204930 A
1 A
3204931 TCCCCATATC
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 10 0.18
56 46 0.82
ACGTcount: A:0.31, C:0.41, G:0.04, T:0.23
Consensus pattern (55 bp):
ACCCAAAATCACAACACTCATCTCATCTCCATCTCTCACTCTCTACGCGAAATCC
Found at i:3205031 original size:34 final size:35
Alignment explanation
Indices: 3204988--3205062 Score: 143
Period size: 35 Copynumber: 2.2 Consensus size: 35
3204978 AACCATTCAC
3204988 AATCAAAAAT-CCTCACAATCATTCAGAAATGGAA
1 AATCAAAAATCCCTCACAATCATTCAGAAATGGAA
3205022 AATCAAAAATCCCTCACAATCATTCAGAAATGGAA
1 AATCAAAAATCCCTCACAATCATTCAGAAATGGAA
3205057 AATCAA
1 AATCAA
3205063 CCTCCGAGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 10 0.25
35 30 0.75
ACGTcount: A:0.51, C:0.21, G:0.08, T:0.20
Consensus pattern (35 bp):
AATCAAAAATCCCTCACAATCATTCAGAAATGGAA
Found at i:3205369 original size:18 final size:19
Alignment explanation
Indices: 3205346--3205388 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
3205336 GCAACGAGAG
*
3205346 AATCGCAACGCGAAA-TAA
1 AATCGCAACGCGAAACCAA
3205364 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACCAA
3205383 AATCGC
1 AATCGC
3205389 GTTGCGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.47, C:0.28, G:0.16, T:0.09
Consensus pattern (19 bp):
AATCGCAACGCGAAACCAA
Found at i:3205407 original size:19 final size:19
Alignment explanation
Indices: 3205385--3205511 Score: 78
Period size: 20 Copynumber: 7.1 Consensus size: 19
3205375 GAAACCAAAA
3205385 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
3205404 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * **
3205418 TCTCGTTGTGATAGTCATT
1 TCGCGTTGCGATTTTCATT
3205437 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
3205451 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
3205470 TCCGCGTTGCGATTCTT-ATT
1 T-CGCGTTGCGATT-TTCATT
*
3205490 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
3205510 TC
1 TC
3205512 AACCAAAAGA
Statistics
Matches: 82, Mismatches: 12, Indels: 28
0.67 0.10 0.23
Matches are distributed among these distances:
14 19 0.23
16 4 0.05
17 5 0.06
19 25 0.30
20 27 0.33
21 2 0.02
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:3205436 original size:33 final size:33
Alignment explanation
Indices: 3205388--3205485 Score: 160
Period size: 33 Copynumber: 2.9 Consensus size: 33
3205378 ACCAAAATCG
**
3205388 CGTTGCGATTTTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
*
3205421 CGTTGTGATAGTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
3205454 CGTTGCGATAGTCATTTCCGCGTTGCGATTCT
1 CGTTGCGATAGTCATTT-CGCGTTGCGATTCT
3205486 TATTATCTCG
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
33 46 0.77
34 14 0.23
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.42
Consensus pattern (33 bp):
CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
Found at i:3207497 original size:21 final size:21
Alignment explanation
Indices: 3207473--3207527 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 21
3207463 AACGGTGAGG
*
3207473 GGGGACTCTTGAGGGAGGATA
1 GGGGACTCTTGAGGGACGATA
* *
3207494 GGGGCCTCTTGA---ACGATT
1 GGGGACTCTTGAGGGACGATA
3207512 GGGGACTCTTGAGGGA
1 GGGGACTCTTGAGGGA
3207528 TGACAGGTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
18 15 0.56
21 12 0.44
ACGTcount: A:0.20, C:0.15, G:0.44, T:0.22
Consensus pattern (21 bp):
GGGGACTCTTGAGGGACGATA
Found at i:3207907 original size:20 final size:19
Alignment explanation
Indices: 3207882--3207949 Score: 73
Period size: 20 Copynumber: 3.5 Consensus size: 19
3207872 CGAAACTTAA
3207882 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCG-AAATGACT
* *
3207902 ATCGCAATGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
3207922 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
3207941 ATCGCAACG
1 ATCGCAACG
3207950 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
19 14 0.34
20 26 0.63
21 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:3207957 original size:14 final size:14
Alignment explanation
Indices: 3207938--3207995 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
3207928 ATGCGAAATG
3207938 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
3207952 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
3207968 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
*
3207984 AAAATCGTAACG
1 AAAATCGCAACG
3207996 CGAACACAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.48, C:0.22, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:3207980 original size:32 final size:33
Alignment explanation
Indices: 3207922--3207999 Score: 131
Period size: 32 Copynumber: 2.4 Consensus size: 33
3207912 GGAAATGGCT
3207922 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
3207955 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
* *
3207987 ATCGTAACGCGAA
1 ATCGCAATGCGAA
3208000 CACAAATCGC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
32 27 0.63
33 16 0.37
ACGTcount: A:0.46, C:0.22, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:3208007 original size:32 final size:32
Alignment explanation
Indices: 3207922--3208010 Score: 108
Period size: 32 Copynumber: 2.8 Consensus size: 32
3207912 GGAAATGGCT
* *
3207922 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAAT-CAAATCGCAACGACAAA
* *
3207955 ATCGCAATGCGAAATGAAATCGCAACGACAAA
1 ATCGCAACGCGAAATCAAATCGCAACGACAAA
*
3207987 ATCGTAACGCGAACA-CAAATCGCA
1 ATCGCAACGCGAA-ATCAAATCGCA
3208011 TTGCGATTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
32 35 0.69
33 16 0.31
ACGTcount: A:0.46, C:0.24, G:0.18, T:0.12
Consensus pattern (32 bp):
ATCGCAACGCGAAATCAAATCGCAACGACAAA
Found at i:3208027 original size:18 final size:18
Alignment explanation
Indices: 3208006--3208070 Score: 93
Period size: 18 Copynumber: 3.8 Consensus size: 18
3207996 CGAACACAAA
3208006 TCGCATTGCGATTTCATT
1 TCGCATTGCGATTTCATT
*
3208024 TCGCATTGCGATTT--TG
1 TCGCATTGCGATTTCATT
3208040 TCG--TTGCGATTTCATT
1 TCGCATTGCGATTTCATT
3208056 TCGCATTGCGATTTC
1 TCGCATTGCGATTTC
3208071 GTTGTGATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
14 9 0.22
16 8 0.20
18 24 0.59
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.45
Consensus pattern (18 bp):
TCGCATTGCGATTTCATT
Found at i:3208086 original size:29 final size:30
Alignment explanation
Indices: 3208011--3208096 Score: 122
Period size: 32 Copynumber: 2.8 Consensus size: 30
3208001 ACAAATCGCA
3208011 TTGCGATTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTCATTTCGCATTGCGA--TTGTCG
3208043 TTGCGATTTCATTTCGCATTGCGATT-TCG
1 TTGCGATTTCATTTCGCATTGCGATTGTCG
*
3208072 TTGTGATTTTC-TTTCGCATTGCGAT
1 TTGCGA-TTTCATTTCGCATTGCGAT
3208097 AGCCATTTTC
Statistics
Matches: 52, Mismatches: 1, Indels: 5
0.90 0.02 0.09
Matches are distributed among these distances:
29 22 0.42
30 6 0.12
32 24 0.46
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.48
Consensus pattern (30 bp):
TTGCGATTTCATTTCGCATTGCGATTGTCG
Found at i:3208209 original size:16 final size:15
Alignment explanation
Indices: 3208188--3208219 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
3208178 TGCATTCTTC
3208188 AACCAAAACAAAACAA
1 AACCAAAA-AAAACAA
3208204 AACCAAAAAAAACAA
1 AACCAAAAAAAACAA
3208219 A
1 A
3208220 TACTAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (15 bp):
AACCAAAAAAAACAA
Found at i:3209996 original size:20 final size:20
Alignment explanation
Indices: 3209973--3210017 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
3209963 AATGAAAATT
3209973 GCAACACGAAAATGACTATC
1 GCAACACGAAAATGACTATC
* **
3209993 GCAACGCGAATTTGACTATC
1 GCAACACGAAAATGACTATC
3210013 GCAAC
1 GCAAC
3210018 GAGAGAATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.18
Consensus pattern (20 bp):
GCAACACGAAAATGACTATC
Found at i:3210299 original size:20 final size:21
Alignment explanation
Indices: 3210274--3210322 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
3210264 TCTGAGAGAT
3210274 GGAGAT-AGACGGATTTC-TCC
1 GGAGATGAGACGGATTTCGT-C
*
3210294 GGAGATGGGGACGGATTTCGTC
1 GGAGAT-GAGACGGATTTCGTC
3210316 GGAGATG
1 GGAGATG
3210323 GGTGAGAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 6 0.24
21 1 0.04
22 17 0.68
23 1 0.04
ACGTcount: A:0.22, C:0.14, G:0.41, T:0.22
Consensus pattern (21 bp):
GGAGATGAGACGGATTTCGTC
Found at i:3210308 original size:22 final size:22
Alignment explanation
Indices: 3210281--3210324 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
3210271 GATGGAGATA
3210281 GACGGATTTC-TCCGGAGATGGG
1 GACGGATTTCGT-CGGAGATGGG
3210303 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
3210325 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.18, C:0.16, G:0.43, T:0.23
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:3210540 original size:20 final size:20
Alignment explanation
Indices: 3210454--3210548 Score: 93
Period size: 20 Copynumber: 4.7 Consensus size: 20
3210444 GAATATGTAT
*
3210454 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* *
3210474 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* * *
3210494 TATCTCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
*
3210515 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
3210535 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
3210549 TTTCCCAATT
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
19 3 0.05
20 45 0.73
21 12 0.19
22 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:3210567 original size:41 final size:41
Alignment explanation
Indices: 3210475--3210569 Score: 111
Period size: 41 Copynumber: 2.3 Consensus size: 41
3210465 GAAAGTCAGA
* * * ** *
3210475 ATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCAAT
*
3210516 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTT-CCAAT
3210558 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
3210570 TTACTTATTC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
41 43 0.96
42 2 0.04
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (41 bp):
ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:3210659 original size:21 final size:21
Alignment explanation
Indices: 3210619--3210659 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
3210609 ACTGTAGACC
** *
3210619 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGCAACT
3210640 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATGCAAC
3210660 GCGAATTTGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAAATGCAACT
Found at i:3223511 original size:20 final size:21
Alignment explanation
Indices: 3223486--3223527 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
3223476 TAATCATAAC
*
3223486 ATTTCAATATG-CATGTATAT
1 ATTTCAATATGACATATATAT
3223506 ATTTCAATATGACATATATAT
1 ATTTCAATATGACATATATAT
3223527 A
1 A
3223528 AATCATGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (21 bp):
ATTTCAATATGACATATATAT
Found at i:3223733 original size:38 final size:38
Alignment explanation
Indices: 3223681--3223776 Score: 138
Period size: 38 Copynumber: 2.5 Consensus size: 38
3223671 CTCGTACAAA
*
3223681 TGTCCCGAAAGACCTATCATCCCGAAGGATGTCATCTG
1 TGTCCCGAAAGACCTATCATCCCGAAGGATGTAATCTG
* *
3223719 TGTCCCGAAGGACCTGTCATCCCGAAGGATGTAATCTG
1 TGTCCCGAAAGACCTATCATCCCGAAGGATGTAATCTG
* * *
3223757 TATCCCGTATGACCTATCAT
1 TGTCCCGAAAGACCTATCAT
3223777 ATGTCTTATA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
TGTCCCGAAAGACCTATCATCCCGAAGGATGTAATCTG
Found at i:3223762 original size:21 final size:20
Alignment explanation
Indices: 3223699--3223763 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 20
3223689 AAGACCTATC
3223699 ATCCCGAAGGATGTCATCTGT
1 ATCCCGAAGGATGT-ATCTGT
* *
3223720 GTCCCGAA-G--G-ACCTGT
1 ATCCCGAAGGATGTATCTGT
3223736 CATCCCGAAGGATGTAATCTGT
1 -ATCCCGAAGGATGT-ATCTGT
3223758 ATCCCG
1 ATCCCG
3223764 TATGACCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
16 5 0.15
17 7 0.21
18 2 0.06
20 2 0.06
21 13 0.38
22 5 0.15
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (20 bp):
ATCCCGAAGGATGTATCTGT
Found at i:3223982 original size:46 final size:46
Alignment explanation
Indices: 3223925--3224029 Score: 185
Period size: 46 Copynumber: 2.3 Consensus size: 46
3223915 ATGTGTAACC
3223925 ATGT-ATTTCATATCATATCACATGTATCACGTATTACATATTCAT
1 ATGTCATTTCATATCATATCACATGTATCACGTATTACATATTCAT
*
3223970 ATGTCATTTCATATCATATCACATGTATCACGTATTGCATATTCAT
1 ATGTCATTTCATATCATATCACATGTATCACGTATTACATATTCAT
*
3224016 ATATCATTTCATAT
1 ATGTCATTTCATAT
3224030 AGTCACATAG
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
45 4 0.07
46 53 0.93
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.43
Consensus pattern (46 bp):
ATGTCATTTCATATCATATCACATGTATCACGTATTACATATTCAT
Found at i:3235365 original size:20 final size:21
Alignment explanation
Indices: 3235340--3235381 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
3235330 TAATCATAAC
*
3235340 ATTTCAATAT-ACATGTATAT
1 ATTTCAATATGACATATATAT
3235360 ATTTCAATATGACATATATAT
1 ATTTCAATATGACATATATAT
3235381 A
1 A
3235382 AATCATGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.43
Consensus pattern (21 bp):
ATTTCAATATGACATATATAT
Found at i:3235559 original size:17 final size:17
Alignment explanation
Indices: 3235537--3235601 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
3235527 CGTACAAATG
3235537 TCCCGAAGGACCTATCA
1 TCCCGAAGGACCTATCA
** *
3235554 TCCCGAAGGATGTCATCTGTG
1 TCCCGAAGGACCT-ATC---A
*
3235575 TCCCGAAGGACCTGTCA
1 TCCCGAAGGACCTATCA
3235592 TCCCGAAGGA
1 TCCCGAAGGA
3235602 TGTAATCTGT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
17 21 0.57
18 3 0.08
20 2 0.05
21 11 0.30
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (17 bp):
TCCCGAAGGACCTATCA
Found at i:3235580 original size:21 final size:21
Alignment explanation
Indices: 3235554--3235617 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
3235544 GGACCTATCA
3235554 TCCCGAAGGATGTCATCTGTG
1 TCCCGAAGGATGTCATCTGTG
*
3235575 TCCCGAAGGA---C--CTGTCA
1 TCCCGAAGGATGTCATCTGT-G
*
3235592 TCCCGAAGGATGTAATCTGTG
1 TCCCGAAGGATGTCATCTGTG
3235613 TCCCG
1 TCCCG
3235618 TATGACCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
16 4 0.12
17 10 0.29
18 1 0.03
21 15 0.44
22 4 0.12
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (21 bp):
TCCCGAAGGATGTCATCTGTG
Found at i:3235586 original size:38 final size:38
Alignment explanation
Indices: 3235535--3235630 Score: 156
Period size: 38 Copynumber: 2.5 Consensus size: 38
3235525 CTCGTACAAA
*
3235535 TGTCCCGAAGGACCTATCATCCCGAAGGATGTCATCTG
1 TGTCCCGAAGGACCTATCATCCCGAAGGATGTAATCTG
*
3235573 TGTCCCGAAGGACCTGTCATCCCGAAGGATGTAATCTG
1 TGTCCCGAAGGACCTATCATCCCGAAGGATGTAATCTG
* *
3235611 TGTCCCGTATGACCTATCAT
1 TGTCCCGAAGGACCTATCAT
3235631 ATGTCTTATA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (38 bp):
TGTCCCGAAGGACCTATCATCCCGAAGGATGTAATCTG
Found at i:3235836 original size:46 final size:46
Alignment explanation
Indices: 3235779--3235883 Score: 176
Period size: 46 Copynumber: 2.3 Consensus size: 46
3235769 ATGTGTAACC
*
3235779 ATGT-ATTTCATATCATATCACATGTATCACGTATTACATATTCAT
1 ATGTCATTTCATATCATATCACATGTATCACATATTACATATTCAT
*
3235824 ATGTCATTTCATATCATATCACATGTATCACATATTGCATATTCAT
1 ATGTCATTTCATATCATATCACATGTATCACATATTACATATTCAT
*
3235870 ATATCATTTCATAT
1 ATGTCATTTCATAT
3235884 AGTCACATAG
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 4 0.07
46 52 0.93
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (46 bp):
ATGTCATTTCATATCATATCACATGTATCACATATTACATATTCAT
Found at i:3248578 original size:16 final size:16
Alignment explanation
Indices: 3248557--3248591 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
3248547 GAATATGTCA
3248557 ATTTAAAAAGGTATTT
1 ATTTAAAAAGGTATTT
3248573 ATTTAAAAAGGTATTT
1 ATTTAAAAAGGTATTT
3248589 ATT
1 ATT
3248592 ACTTTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (16 bp):
ATTTAAAAAGGTATTT
Found at i:3248892 original size:22 final size:23
Alignment explanation
Indices: 3248836--3248893 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 23
3248826 GAATTCAAGA
*
3248836 TTTTTTCCTCTCTTGAAAAATATT
1 TTTTTTTCTC-CTTGAAAAATATT
* **
3248860 TTCTCAT-TCCTTG-AAAATATT
1 TTTTTTTCTCCTTGAAAAATATT
3248881 TTTTTTTCTCCTT
1 TTTTTTTCTCCTT
3248894 AGTTTTTCCG
Statistics
Matches: 26, Mismatches: 7, Indels: 4
0.70 0.19 0.11
Matches are distributed among these distances:
21 12 0.46
22 9 0.35
23 2 0.08
24 3 0.12
ACGTcount: A:0.21, C:0.19, G:0.03, T:0.57
Consensus pattern (23 bp):
TTTTTTTCTCCTTGAAAAATATT
Found at i:3260771 original size:18 final size:17
Alignment explanation
Indices: 3260747--3260793 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
3260737 TGTTTATGAG
3260747 GGAATTGGAATCTGTGAA
1 GGAATTGGAATCTGT-AA
* * *
3260765 TGAATTGAAATCTGTCA
1 GGAATTGGAATCTGTAA
3260782 GGAATTGGAATC
1 GGAATTGGAATC
3260794 CAATTCCATA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (17 bp):
GGAATTGGAATCTGTAA
Found at i:3261409 original size:39 final size:39
Alignment explanation
Indices: 3261350--3261444 Score: 140
Period size: 39 Copynumber: 2.5 Consensus size: 39
3261340 TTTTCACCCT
*
3261350 AAACCCGAACCCGACCCGACCCGAATATCACACTTAAAAA
1 AAACCCG-ACCCGACCCGACCCAAATATCACACTTAAAAA
*
3261390 AAACCCGACCCGACTCGACCCAAATATCACACTT--AAA
1 AAACCCGACCCGACCCGACCCAAATATCACACTTAAAAA
*
3261427 AAACCCAACCCGACCCGA
1 AAACCCGACCCGACCCGA
3261445 ACAAAATAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
37 19 0.37
39 25 0.49
40 7 0.14
ACGTcount: A:0.41, C:0.40, G:0.09, T:0.09
Consensus pattern (39 bp):
AAACCCGACCCGACCCGACCCAAATATCACACTTAAAAA
Found at i:3262640 original size:18 final size:18
Alignment explanation
Indices: 3262600--3262640 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
3262590 ACAAAATACA
3262600 ACATT-CCTAGTAATCTT
1 ACATTCCCTAGTAATCTT
3262617 --ATTCCCTAGTAATCTT
1 ACATTCCCTAGTAATCTT
3262633 ACATTCCC
1 ACATTCCC
3262641 ACTGGTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 3 0.14
16 12 0.57
18 6 0.29
ACGTcount: A:0.27, C:0.29, G:0.05, T:0.39
Consensus pattern (18 bp):
ACATTCCCTAGTAATCTT
Found at i:3266626 original size:19 final size:21
Alignment explanation
Indices: 3266573--3266630 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 21
3266563 ACCGTCAGAG
*
3266573 GGGTATCGATACCACTATATA
1 GGGTATCGATACCACTATAGA
*
3266594 GTAGTATC-AGTACCA-TAT-GA
1 G-GGTATCGA-TACCACTATAGA
3266614 GGGTATCGATACC-CTAT
1 GGGTATCGATACCACTAT
3266631 TTCGATTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
19 12 0.40
20 3 0.10
21 5 0.17
22 10 0.33
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (21 bp):
GGGTATCGATACCACTATAGA
Found at i:3272117 original size:28 final size:28
Alignment explanation
Indices: 3272080--3272152 Score: 69
Period size: 28 Copynumber: 2.5 Consensus size: 28
3272070 TAATACGCAC
* *
3272080 AAAATAAATAAATAAATTGTTATTATATA
1 AAAAT-AATAAATAAATTGCTATTAAATA
*
3272109 AAAATAAT-AATACATTTGCTATTAAATA
1 AAAATAATAAATA-AATTGCTATTAAATA
3272137 AAGAA-AACTAAATAAA
1 AA-AATAA-TAAATAAA
3272153 AACATTACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
27 4 0.11
28 19 0.53
29 9 0.25
30 4 0.11
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (28 bp):
AAAATAATAAATAAATTGCTATTAAATA
Found at i:3281553 original size:22 final size:22
Alignment explanation
Indices: 3281504--3281553 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
3281494 TCTAGTAAAA
**
3281504 GGTTACCGGTTTTATTATTATT
1 GGTTACCAATTTTATTATTATT
** *
3281526 TTTTACCAATTTTGTTATTATT
1 GGTTACCAATTTTATTATTATT
3281548 GGTTAC
1 GGTTAC
3281554 TTAACCGAAA
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.10, G:0.14, T:0.56
Consensus pattern (22 bp):
GGTTACCAATTTTATTATTATT
Found at i:3281592 original size:21 final size:21
Alignment explanation
Indices: 3281568--3281613 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
3281558 CCGAAAATGT
*
3281568 TAAAAACATTAATGTTTTAGG
1 TAAAAACAATAATGTTTTAGG
* *
3281589 TAAATATAATAATGTTTTAGG
1 TAAAAACAATAATGTTTTAGG
3281610 TAAA
1 TAAA
3281614 TTTTTACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.46, C:0.02, G:0.13, T:0.39
Consensus pattern (21 bp):
TAAAAACAATAATGTTTTAGG
Found at i:3286199 original size:15 final size:15
Alignment explanation
Indices: 3286179--3286220 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
3286169 CTTCATGGGG
*
3286179 TAAGAAGACAACGTC
1 TAAGAAGAAAACGTC
3286194 TAAGAAGAAAACGTC
1 TAAGAAGAAAACGTC
*
3286209 AAAGAAGGAAAA
1 TAAGAA-GAAAA
3286221 AGAAAGCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.57, C:0.12, G:0.21, T:0.10
Consensus pattern (15 bp):
TAAGAAGAAAACGTC
Found at i:3290744 original size:29 final size:27
Alignment explanation
Indices: 3290702--3290758 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 27
3290692 CATCAGCAGT
3290702 TGAAGCAAGTTATTGATGCGTAAGTAACA
1 TGAAGCAAGTTATTGAT--GTAAGTAACA
3290731 TGAAGCAAGTTATTGATGTAAGTAACA
1 TGAAGCAAGTTATTGATGTAAGTAACA
3290758 T
1 T
3290759 AAATTATCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 11 0.39
29 17 0.61
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (27 bp):
TGAAGCAAGTTATTGATGTAAGTAACA
Found at i:3292062 original size:2 final size:2
Alignment explanation
Indices: 3292055--3292080 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3292045 TCCATCTACA
3292055 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3292081 TAATTTCTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3292202 original size:15 final size:15
Alignment explanation
Indices: 3292179--3292219 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
3292169 TGCGTGTCAT
*
3292179 AAATTTATGACACAC
1 AAATTTATGACAAAC
* *
3292194 AAATGTATGTCAAAC
1 AAATTTATGACAAAC
3292209 AAATTTATGAC
1 AAATTTATGAC
3292220 GGGGGCTTCA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (15 bp):
AAATTTATGACAAAC
Found at i:3292228 original size:85 final size:85
Alignment explanation
Indices: 3292130--3292437 Score: 456
Period size: 85 Copynumber: 3.6 Consensus size: 85
3292120 GTCTTTTTAA
* * *
3292130 ATGACGTGTGCTTCAATGACACGCAATGTAAGTCATATATGCGTGTCATAAATTTATGACACACA
1 ATGACGGGGGCTTCAATGACACGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
* *
3292195 AATGTATGTCAAACAAATTT
66 AATGTGTGTCAAACTAATTT
* *
3292215 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACA
1 ATGACGGGGGCTTCAATGACACGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
* *
3292280 AATGTGCGTC-ATCTTAATTT
66 AATGTGTGTCAAAC-TAATTT
* *
3292300 ATGACGGGGGCTTTAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
1 ATGACGGGGGCTTCAATGACACGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
* *
3292365 AATGTGTGTCATATTAATTT
66 AATGTGTGTCAAACTAATTT
** *
3292385 ATGACGGAAGCTTCAATGACACGCAATGTAAGTCATACATGCGCGTCATAAAT
1 ATGACGGGGGCTTCAATGACACGCAATGTAAGTCATACATGCGTGTCATAAAT
3292438 GCGTGTTATA
Statistics
Matches: 201, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
84 2 0.01
85 199 0.99
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (85 bp):
ATGACGGGGGCTTCAATGACACGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
AATGTGTGTCAAACTAATTT
Found at i:3292434 original size:13 final size:13
Alignment explanation
Indices: 3292416--3292460 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
3292406 CGCAATGTAA
*
3292416 GTCATACATGCGC
1 GTCATAAATGCGC
*
3292429 GTCATAAATGCGT
1 GTCATAAATGCGC
* *
3292442 GTTATAAATGTGC
1 GTCATAAATGCGC
3292455 GTCATA
1 GTCATA
3292461 GATTTATGAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (13 bp):
GTCATAAATGCGC
Found at i:3299779 original size:26 final size:26
Alignment explanation
Indices: 3299741--3299791 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3299731 TTTCAATCAA
*
3299741 CCAACAATTAATTAATATAGTAAGAC
1 CCAACAATCAATTAATATAGTAAGAC
3299767 CCAACAATCAATTAATATAGTAAGA
1 CCAACAATCAATTAATATAGTAAGA
3299792 TGAGACATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.08, T:0.25
Consensus pattern (26 bp):
CCAACAATCAATTAATATAGTAAGAC
Found at i:3300308 original size:23 final size:23
Alignment explanation
Indices: 3300238--3300309 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
3300228 TCAAGAGCTT
3300238 GATTGAAGCTCGAGACTCGAACTC
1 GATTGAAGCTCGA-ACTCGAACTC
* * *
3300262 GATTGAAGCTC-AATTTTGAGCTC
1 GATTGAAGCTCGAA-CTCGAACTC
* *
3300285 GATTCAAGCTCGAACTCAAACTC
1 GATTGAAGCTCGAACTCGAACTC
3300308 GA
1 GA
3300310 ATTTGAACCT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
22 1 0.03
23 24 0.63
24 13 0.34
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (23 bp):
GATTGAAGCTCGAACTCGAACTC
Found at i:3303015 original size:7 final size:7
Alignment explanation
Indices: 3303000--3303195 Score: 91
Period size: 7 Copynumber: 28.3 Consensus size: 7
3302990 GTGTATAACT
3303000 TAAACCC
1 TAAACCC
*
3303007 TAAATCC
1 TAAACCC
*
3303014 TAACCCC
1 TAAACCC
3303021 TAAACCC
1 TAAACCC
*
3303028 TAACCCC
1 TAAACCC
*
3303035 T-AACACA
1 TAAAC-CC
3303042 TAAACCC
1 TAAACCC
3303049 TAAACCC
1 TAAACCC
3303056 T-AACACC
1 TAAAC-CC
* *
3303063 TACA-CA
1 TAAACCC
3303069 TAAACCC
1 TAAACCC
*
3303076 TAAATCC
1 TAAACCC
*
3303083 TAAACCT
1 TAAACCC
*
3303090 TAAATCC
1 TAAACCC
* **
3303097 T-ATCATA
1 TAAAC-CC
3303104 TAAACCC
1 TAAACCC
**
3303111 TAAACTA
1 TAAACCC
3303118 TAAACCC
1 TAAACCC
*
3303125 TAAATCC
1 TAAACCC
*
3303132 T-ATCACC
1 TAAAC-CC
3303139 TAAACCC
1 TAAACCC
*
3303146 TAAACCT
1 TAAACCC
*
3303153 TATA-CC
1 TAAACCC
3303159 TAAA-CC
1 TAAACCC
* * *
3303165 TTATCACA
1 TAAAC-CC
**
3303173 TAAACTT
1 TAAACCC
3303180 TAAACCC
1 TAAACCC
3303187 TAAACCC
1 TAAACCC
3303194 TA
1 TA
3303196 TCATTGAAAA
Statistics
Matches: 133, Mismatches: 45, Indels: 22
0.67 0.22 0.11
Matches are distributed among these distances:
6 19 0.14
7 102 0.77
8 12 0.09
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.22
Consensus pattern (7 bp):
TAAACCC
Found at i:3303024 original size:21 final size:21
Alignment explanation
Indices: 3303000--3303164 Score: 116
Period size: 21 Copynumber: 8.3 Consensus size: 21
3302990 GTGTATAACT
* *
3303000 TAAACCCTAAATCCTAACCCC
1 TAAACCCTAAACCCTAACACC
* *
3303021 TAAACCCTAACCCCTAACACA
1 TAAACCCTAAACCCTAACACC
3303042 TAAACCCTAAACCCTAACACC
1 TAAACCCTAAACCCTAACACC
* *
3303063 TACA-CATAAACCCTAA-ATCC
1 TAAACCCTAAACCCTAACA-CC
* * * **
3303083 TAAACCTTAAATCCTATCATA
1 TAAACCCTAAACCCTAACACC
3303104 TAAACCCTAAA--CT---A--
1 TAAACCCTAAACCCTAACACC
* *
3303118 TAAACCCTAAATCCTATCACC
1 TAAACCCTAAACCCTAACACC
* *
3303139 TAAACCCTAAA-CCTTATACC
1 TAAACCCTAAACCCTAACACC
3303159 TAAACC
1 TAAACC
3303165 TTATCACATA
Statistics
Matches: 116, Mismatches: 18, Indels: 21
0.75 0.12 0.14
Matches are distributed among these distances:
14 11 0.09
16 3 0.03
19 4 0.03
20 28 0.24
21 69 0.59
22 1 0.01
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.21
Consensus pattern (21 bp):
TAAACCCTAAACCCTAACACC
Found at i:3303110 original size:35 final size:33
Alignment explanation
Indices: 3303000--3303195 Score: 155
Period size: 35 Copynumber: 5.7 Consensus size: 33
3302990 GTGTATAACT
* * * *
3303000 TAAACCCTAAATCCTAACCCCTAAACCCTAACCCC
1 TAAACCCTAAA-CCTAAACCCTAAA-CCTATCACA
*
3303035 T-AACACATAAACCCTAAACCCTAACACCTA-CACA
1 TAAAC-CCTAAA-CCTAAACCCTAA-ACCTATCACA
* *
3303069 TAAACCCTAAATCCTAAACCTTAAATCCTATCATA
1 TAAACCCTAAA-CCTAAACCCTAAA-CCTATCACA
* *
3303104 TAAACCCTAAACTATAAACCCTAAATCCTATCACC
1 TAAACCCTAAAC-CTAAACCCTAAA-CCTATCACA
*
3303139 TAAACCCTAAACCTTATA-CCTAAACCTTATCACA
1 TAAACCCTAAACC-TAAACCCTAAACC-TATCACA
**
3303173 TAAACTTTAAACCCTAAACCCTA
1 TAAACCCTAAA-CCTAAACCCTA
3303196 TCATTGAAAA
Statistics
Matches: 132, Mismatches: 19, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
33 3 0.02
34 51 0.39
35 77 0.58
36 1 0.01
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.22
Consensus pattern (33 bp):
TAAACCCTAAACCTAAACCCTAAACCTATCACA
Found at i:3303338 original size:11 final size:11
Alignment explanation
Indices: 3303322--3303349 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
3303312 TTATTCATCA
3303322 TTAATATATTT
1 TTAATATATTT
3303333 TTAATATATTT
1 TTAATATATTT
3303344 TTAATA
1 TTAATA
3303350 ATGTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTAATATATTT
Found at i:3323749 original size:19 final size:19
Alignment explanation
Indices: 3323725--3323763 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
3323715 AATAAATAAA
3323725 ACAAGGAAAACTGCAAACG
1 ACAAGGAAAACTGCAAACG
3323744 ACAAGGAAAACTGCAAACG
1 ACAAGGAAAACTGCAAACG
3323763 A
1 A
3323764 AAAGAGAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.21, G:0.21, T:0.05
Consensus pattern (19 bp):
ACAAGGAAAACTGCAAACG
Found at i:3329686 original size:16 final size:17
Alignment explanation
Indices: 3329654--3329686 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
3329644 TCCAGCTACA
*
3329654 CCATTTTGATCCGAAAC
1 CCATTTTGATCCAAAAC
3329671 CCATTTT-ATCCAAAAC
1 CCATTTTGATCCAAAAC
3329687 TTTAAAGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.33, C:0.30, G:0.06, T:0.30
Consensus pattern (17 bp):
CCATTTTGATCCAAAAC
Found at i:3344258 original size:29 final size:32
Alignment explanation
Indices: 3344215--3344275 Score: 101
Period size: 29 Copynumber: 2.0 Consensus size: 32
3344205 TGTTGAGTAA
3344215 ATAAAACATCTATCCATTG-AAAACC-ATGTC
1 ATAAAACATCTATCCATTGAAAAACCAATGTC
3344245 ATAAAA-ATCTATCCATTGAAAAACCAATGTC
1 ATAAAACATCTATCCATTGAAAAACCAATGTC
3344276 TACACTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 12 0.41
30 12 0.41
31 5 0.17
ACGTcount: A:0.46, C:0.21, G:0.07, T:0.26
Consensus pattern (32 bp):
ATAAAACATCTATCCATTGAAAAACCAATGTC
Found at i:3345988 original size:6 final size:6
Alignment explanation
Indices: 3345979--3346005 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
3345969 CTCCTTCTTT
3345979 TATTTA TATTTA TATTTA TATTTA TAT
1 TATTTA TATTTA TATTTA TATTTA TAT
3346006 GAAAAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TATTTA
Found at i:3348293 original size:20 final size:20
Alignment explanation
Indices: 3348268--3348307 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
3348258 GTATGCTTCC
3348268 GCATCTAATATTTTTATTCT
1 GCATCTAATATTTTTATTCT
3348288 GCATCTAATATTTTTATTCT
1 GCATCTAATATTTTTATTCT
3348308 TGATGATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.05, T:0.55
Consensus pattern (20 bp):
GCATCTAATATTTTTATTCT
Found at i:3349403 original size:23 final size:23
Alignment explanation
Indices: 3349375--3349419 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
3349365 ATAAAATTAA
3349375 TATATTTTAATTAATA-TTATAAG
1 TATATTTTAA-TAATATTTATAAG
*
3349398 TATATTTTTATAATATTTATAA
1 TATATTTTAATAATATTTATAA
3349420 TTAGCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
TATATTTTAATAATATTTATAAG
Found at i:3349989 original size:24 final size:25
Alignment explanation
Indices: 3349958--3350012 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
3349948 ACAGTGATTA
3349958 CAAA-ATTAAAGT-GATTTTAAAAT
1 CAAATATTAAAGTGGATTTTAAAAT
* *
3349981 CAAATATTAAGGTGGATTTTAACAT
1 CAAATATTAAAGTGGATTTTAAAAT
*
3350006 TAAATAT
1 CAAATAT
3350013 AATTAAACTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 4 0.15
24 7 0.26
25 16 0.59
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.36
Consensus pattern (25 bp):
CAAATATTAAAGTGGATTTTAAAAT
Found at i:3350894 original size:2 final size:2
Alignment explanation
Indices: 3350887--3350911 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3350877 TTTTCCTGAT
3350887 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
3350912 TTGTTTTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3352142 original size:19 final size:19
Alignment explanation
Indices: 3352110--3352146 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
3352100 ATGACCAACA
*
3352110 AAATCACAATGCGATCTCT
1 AAATCACAACGCGATCTCT
*
3352129 AAATCGCAACGCGATCTC
1 AAATCACAACGCGATCTC
3352147 CATTATCGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.22
Consensus pattern (19 bp):
AAATCACAACGCGATCTCT
Found at i:3352209 original size:21 final size:21
Alignment explanation
Indices: 3352193--3352244 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
3352183 TTTTGACCAT
3352193 CGCATTGCGATTTTTGAAATC
1 CGCATTGCGATTTTTGAAATC
* *
3352214 CGCGTTGCGATTTTAGATAAT-
1 CGCATTGCGATTTTTGA-AATC
*
3352235 CGCAATGCGA
1 CGCATTGCGA
3352245 ATATGTAAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (21 bp):
CGCATTGCGATTTTTGAAATC
Found at i:3352299 original size:20 final size:20
Alignment explanation
Indices: 3352274--3352318 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
3352264 ATAACACTTG
* *
3352274 ATCGCAACGCGATTCTGGCT
1 ATCGCAACGAGATTCTGACT
3352294 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGATTCTGACT
3352314 ATCGC
1 ATCGC
3352319 GTTGCGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (20 bp):
ATCGCAACGAGATTCTGACT
Found at i:3352904 original size:19 final size:19
Alignment explanation
Indices: 3352880--3352930 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
3352870 AACGACAAAA
*
3352880 TTCGCGTTGCGATAGCCAT
1 TTCGCGTTGCGATAACCAT
3352899 TTCGCGTTGCGATAACCAT
1 TTCGCGTTGCGATAACCAT
3352918 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
3352931 TTTCTCGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.33
Consensus pattern (19 bp):
TTCGCGTTGCGATAACCAT
Found at i:3352965 original size:20 final size:19
Alignment explanation
Indices: 3352880--3353004 Score: 80
Period size: 20 Copynumber: 6.7 Consensus size: 19
3352870 AACGACAAAA
* *
3352880 TTCGCGTTGCGATAGCCAT
1 TTCGCGTTGCGATATCAAT
* *
3352899 TTCGCGTTGCGATAACCAT
1 TTCGCGTTGCGATATCAAT
3352918 TTCGCGTTGCG--AT---T
1 TTCGCGTTGCGATATCAAT
* * *
3352932 TTCTCGTTGTGATAGTCAAA
1 TTCGCGTTGCGATA-TCAAT
*
3352952 TTCGCGTTGCGATAATCATT
1 TTCGCGTTGCGAT-ATCAAT
* * *
3352972 TTCGTGTTGCGATTTTCATT
1 TTCGCGTTGCGA-TATCAAT
*
3352992 TTCGTGTTGCGAT
1 TTCGCGTTGCGAT
3353005 TTTAAGTTTC
Statistics
Matches: 87, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
14 10 0.11
16 1 0.01
17 2 0.02
19 30 0.34
20 42 0.48
21 2 0.02
ACGTcount: A:0.16, C:0.20, G:0.23, T:0.41
Consensus pattern (19 bp):
TTCGCGTTGCGATATCAAT
Found at i:3353005 original size:20 final size:20
Alignment explanation
Indices: 3352952--3353007 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
3352942 GATAGTCAAA
* **
3352952 TTCGCGTTGCGATAATCATT
1 TTCGTGTTGCGATTTTCATT
3352972 TTCGTGTTGCGATTTTCATT
1 TTCGTGTTGCGATTTTCATT
3352992 TTCGTGTTGCGATTTT
1 TTCGTGTTGCGATTTT
3353008 AAGTTTCAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.12, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
TTCGTGTTGCGATTTTCATT
Found at i:3353014 original size:20 final size:20
Alignment explanation
Indices: 3352971--3353014 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
3352961 CGATAATCAT
* *
3352971 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTTAAG
3352991 TTTCGTGTTGCGATTTTAAG
1 TTTCGTGTTGCGATTTTAAG
3353011 TTTC
1 TTTC
3353015 AGAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.55
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTTAAG
Found at i:3354880 original size:31 final size:31
Alignment explanation
Indices: 3354824--3354885 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
3354814 TTGTCTTTGT
*
3354824 TTTGTCTTTTGGTTGAAGTTAGTAAATTCATA
1 TTTGTCTTTTGGTTG-ACTTAGTAAATTCATA
3354856 TTTGTCTTTTGGATTG-CTTAGTAAATTCAT
1 TTTGTCTTTTGG-TTGACTTAGTAAATTCAT
3354886 TCGGTAGTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 13 0.46
32 12 0.43
33 3 0.11
ACGTcount: A:0.23, C:0.08, G:0.18, T:0.52
Consensus pattern (31 bp):
TTTGTCTTTTGGTTGACTTAGTAAATTCATA
Found at i:3355039 original size:20 final size:19
Alignment explanation
Indices: 3354998--3355157 Score: 88
Period size: 20 Copynumber: 8.6 Consensus size: 19
3354988 AGAAGAATAG
* *
3354998 TCGCAACACGAAAATGATTA
1 TCGCAACGCG-AAATGACTA
*
3355018 TCGCAACGCGAATTTGACTA
1 TCGCAACGCGAA-ATGACTA
* *
3355038 TCGTAACG-G-GAT-A--A
1 TCGCAACGCGAAATGACTA
* *
3355052 TCGCAATGCGAAAACGACTA
1 TCGCAACGCG-AAATGACTA
*
3355072 TCGCAACACGGAAATGACTA
1 TCGCAACGC-GAAATGACTA
*
3355092 TCGCAACGCGAATTTGACTA
1 TCGCAACGCGAA-ATGACTA
*
3355112 TCGCAACG-G-GAT-A--A
1 TCGCAACGCGAAATGACTA
*
3355126 TCGCAATGCGAAAATGACTA
1 TCGCAACGCG-AAATGACTA
*
3355146 TCGCAACACGAA
1 TCGCAACGCGAA
3355158 TTTAGTTTCG
Statistics
Matches: 104, Mismatches: 21, Indels: 31
0.67 0.13 0.20
Matches are distributed among these distances:
14 15 0.14
15 2 0.02
16 2 0.02
17 5 0.05
18 2 0.02
19 9 0.09
20 68 0.65
21 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.19
Consensus pattern (19 bp):
TCGCAACGCGAAATGACTA
Found at i:3355120 original size:74 final size:74
Alignment explanation
Indices: 3354998--3355157 Score: 284
Period size: 74 Copynumber: 2.2 Consensus size: 74
3354988 AGAAGAATAG
* *
3354998 TCGCAACACGAAAATGATTATCGCAACGCGAATTTGACTATCGTAACGGGATAATCGCAATGCGA
1 TCGCAACACGAAAATGACTATCGCAACGCGAATTTGACTATCGCAACGGGATAATCGCAATGCGA
3355063 AAACGACTA
66 AAACGACTA
*
3355072 TCGCAACACGGAAATGACTATCGCAACGCGAATTTGACTATCGCAACGGGATAATCGCAATGCGA
1 TCGCAACACGAAAATGACTATCGCAACGCGAATTTGACTATCGCAACGGGATAATCGCAATGCGA
*
3355137 AAATGACTA
66 AAACGACTA
3355146 TCGCAACACGAA
1 TCGCAACACGAA
3355158 TTTAGTTTCG
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 81 1.00
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.19
Consensus pattern (74 bp):
TCGCAACACGAAAATGACTATCGCAACGCGAATTTGACTATCGCAACGGGATAATCGCAATGCGA
AAACGACTA
Found at i:3355149 original size:34 final size:34
Alignment explanation
Indices: 3355017--3355152 Score: 137
Period size: 34 Copynumber: 3.8 Consensus size: 34
3355007 GAAAATGATT
** *
3355017 ATCGCAACGCGAATTTGACTATCGTAACGGGATA
1 ATCGCAACGCGAAAATGACTATCGCAACGGGATA
* * *
3355051 ATCGCAATGCGAAAACGACTATCGCAACACGGAAATGA
1 ATCGCAACGCGAAAATGACTATCGC-A-ACGG-GAT-A
**
3355089 CTATCGCAACGCGAATTTGACTATCGCAACGGGATA
1 --ATCGCAACGCGAAAATGACTATCGCAACGGGATA
*
3355125 ATCGCAATGCGAAAATGACTATCGCAAC
1 ATCGCAACGCGAAAATGACTATCGCAAC
3355153 ACGAATTTAG
Statistics
Matches: 82, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
34 45 0.55
35 1 0.01
36 5 0.06
37 4 0.05
38 5 0.06
39 1 0.01
40 21 0.26
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (34 bp):
ATCGCAACGCGAAAATGACTATCGCAACGGGATA
Found at i:3355231 original size:20 final size:20
Alignment explanation
Indices: 3355208--3355265 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
3355198 TCAAATTTGC
* *
3355208 GTTGCGATAATCATTTTCGT
1 GTTGCGATAATAAGTTTCGT
**
3355228 GTTGCGATTTTAAGTTTCGT
1 GTTGCGATAATAAGTTTCGT
**
3355248 GTTGCGATTTTAAGTTTC
1 GTTGCGATAATAAGTTTC
3355266 ATAAACTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.17, C:0.12, G:0.22, T:0.48
Consensus pattern (20 bp):
GTTGCGATAATAAGTTTCGT
Found at i:3355801 original size:42 final size:42
Alignment explanation
Indices: 3355742--3355853 Score: 125
Period size: 42 Copynumber: 2.7 Consensus size: 42
3355732 ACCCGACTCA
** * * *
3355742 CCTATCATCGTTCAAGAGGCCTCTCCTATCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGGCCCCTCCCACCGTTCAAGAGGCC
*
3355784 CCTATCATCCCTCAAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGGCCCCTCCCACCGTTCAAGAGGCC
* ** * *
3355826 CCTGTCATCGTTGAAGAGGTCCCTCCCA
1 CCTATCATCCCTCAAGAGGCCCCTCCCA
3355854 ACATTCTAGA
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGGCCCCTCCCACCGTTCAAGAGGCC
Done.