Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008955.1 Hibiscus syriacus cultivar Beakdansim tig00112285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4658001
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 23
Found at i:808282 original size:23 final size:22
Alignment explanation
Indices: 808204--808311 Score: 73
Period size: 22 Copynumber: 4.8 Consensus size: 22
808194 TGAACCCCCT
808204 TTTATTTTTCTCTATTTTTTCATT-
1 TTTATTTTTCTC---TTTTTCATTA
*
808228 TTTCATTTTTCTCTTTCTTCTTTCA
1 TTT-ATTTTTCTCTTT-TTCATT-A
*
808253 TCT-TTTTTCATCTTTTTCATTA
1 TTTATTTTTC-TCTTTTTCATTA
*
808275 TTTA-TTTTCT-TTTTTC-TTT
1 TTTATTTTTCTCTTTTTCATTA
*
808294 TTTATTTTTTTTCTTTTT
1 TTTA-TTTTTCTCTTTTT
808312 TTCCTTTCAC
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
19 6 0.09
20 6 0.09
21 6 0.09
22 16 0.23
23 16 0.23
24 8 0.12
25 11 0.16
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (22 bp):
TTTATTTTTCTCTTTTTCATTA
Found at i:808312 original size:7 final size:7
Alignment explanation
Indices: 808218--808303 Score: 57
Period size: 7 Copynumber: 11.9 Consensus size: 7
808208 TTTTTCTCTA
808218 TTTTTTC
1 TTTTTTC
*
808225 ATTTTTC
1 TTTTTTC
808232 ATTTTTCTC
1 -TTTTT-TC
*
808241 TTTCTTC
1 TTTTTTC
**
808248 TTTCATC
1 TTTTTTC
808255 TTTTTTC
1 TTTTTTC
808262 ATCTTTTTC
1 -T-TTTTTC
* *
808271 ATTATT-
1 TTTTTTC
*
808277 TATTTTC
1 TTTTTTC
808284 TTTTTTC
1 TTTTTTC
*
808291 TTTTTTA
1 TTTTTTC
808298 TTTTTT
1 TTTTTT
808304 TTCTTTTTTT
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
6 3 0.05
7 41 0.67
8 9 0.15
9 8 0.13
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTTC
Found at i:820469 original size:23 final size:23
Alignment explanation
Indices: 820431--820493 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
820421 CAACAAAATT
*
820431 ATAACTAAAATTAAAACTGGGAAA
1 ATAACT-AAATCAAAACTGGGAAA
820455 ATAACTAAATCAAAACTGGGAAA
1 ATAACTAAATCAAAACTGGGAAA
820478 ATAACTAAATCAAAAC
1 ATAACTAAATCAAAAC
820494 AAACATAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 32 0.84
24 6 0.16
ACGTcount: A:0.59, C:0.13, G:0.10, T:0.19
Consensus pattern (23 bp):
ATAACTAAATCAAAACTGGGAAA
Found at i:820710 original size:15 final size:15
Alignment explanation
Indices: 820690--820738 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
820680 TAATATGAAT
820690 CCTAAACAAATTAAA
1 CCTAAACAAATTAAA
820705 CCTAAACTAAATTAAA
1 CCTAAAC-AAATTAAA
* * *
820721 CATGAATAAATTAAA
1 CCTAAACAAATTAAA
820736 CCT
1 CCT
820739 CACGCGTAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 17 0.59
16 12 0.41
ACGTcount: A:0.55, C:0.18, G:0.02, T:0.24
Consensus pattern (15 bp):
CCTAAACAAATTAAA
Found at i:822151 original size:53 final size:53
Alignment explanation
Indices: 822052--822417 Score: 402
Period size: 53 Copynumber: 6.9 Consensus size: 53
822042 TCTTCAAATG
* ****
822052 ACGGG-TCTGCTCCCTCTTG-TTCAGGGATTAAGGAACTCGAACAATCTTCTAAAA
1 ACGGGTTC-GCTCCCTCTTGCTTCAGGGAGT-A-GAACTCGAACAATCTTCTGCCT
* * * *
822106 ATGGGTTCGCTCCCTATTGCTTCAGGGAGTAGAACTCGAATAATCTTCTGCTT
1 ACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCT
* *
822159 ACGAGTTCGCTCCCTCTTGTTTCAAGGG-GTAGAACTCGAACAATCTTCTGCCT
1 ACGGGTTCGCTCCCTCTTGCTTC-AGGGAGTAGAACTCGAACAATCTTCTGCCT
* * * *
822212 ACGGGTTCACTCCCTCTTGCTTCAGGGAGTATAACTCGAATAATCTTCTCCCT
1 ACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCT
* * * *
822265 ATGTGTTAGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTATGCCT
1 ACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCT
* * * *
822318 ACGGGTTCGTTCCCTCTTACTTCAGGGAGTAGAACTCGGACAATCTTCTACCT
1 ACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCT
** * * *
822371 A-TAG-TC-ATCCCTCTTGGTTCAGGGAGTAAAACTCGAACAATCTTCTG
1 ACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTG
822418 GTGTGATTCT
Statistics
Matches: 264, Mismatches: 44, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
50 35 0.13
51 2 0.01
52 5 0.02
53 192 0.73
54 19 0.07
55 11 0.04
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (53 bp):
ACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCT
Found at i:822946 original size:42 final size:42
Alignment explanation
Indices: 822903--823381 Score: 363
Period size: 42 Copynumber: 11.0 Consensus size: 42
822893 TGACCCAAAT
*
822903 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAT
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
*
822945 GATTTAATCATCATGCTCGAAAGACTTACTGATGACCCGAAG
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
* * * **
822987 GACTTCATCATCATGCTCGAAAGACTTACTGATGACCTAAAG
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
*
823029 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATG
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGC-C---C-GAAG
** * * ** **
823076 GATTTGCTTCA-CTACT-CTTCGGTGAAGGCTTACAAATTACCCGAAG
1 GATTT-AATCATC-A-TGC-TC-G-AAAGACTTACTGATGGCCCGAAG
* *
823122 GATTTAATCATCATGCTCGAAATACTTACTGATGGCCTGAAG
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
* * * **
823164 GACTTCATCATTATGCTTAAAAGACTTACTGATGGCCCGAAG
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
* * *
823206 GACTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATG
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGC-C---C-GAAG
* ** * * ** ** *
823253 GGTTTGCTTCA-CTACT-CTTCCGTGAAGGCTTACAAATTACCCTAAG
1 GATTT-AATCATC-A-TGC-T-CG-AAAGACTTACTGATGGCCCGAAG
** *
823299 GATTTAATCATCATGCTTAAAAGACTTACTGATGGCCCTAAG
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
* *
823341 GATTTAAGCATCATGCTCGAAAGACTTATTGATGGCCCGAA
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAA
823382 TGACTTACTA
Statistics
Matches: 342, Mismatches: 69, Indels: 52
0.74 0.15 0.11
Matches are distributed among these distances:
42 247 0.72
43 3 0.01
44 5 0.01
45 10 0.03
46 17 0.05
47 17 0.05
48 11 0.03
49 5 0.01
50 5 0.01
51 22 0.06
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (42 bp):
GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
Found at i:823070 original size:13 final size:13
Alignment explanation
Indices: 823052--823076 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
823042 TGCTCGAAAG
823052 ACTTACTGATGGC
1 ACTTACTGATGGC
823065 ACTTACTGATGG
1 ACTTACTGATGG
823077 ATTTGCTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (13 bp):
ACTTACTGATGGC
Found at i:823132 original size:93 final size:92
Alignment explanation
Indices: 823026--823334 Score: 366
Period size: 93 Copynumber: 3.4 Consensus size: 92
823016 TGATGACCTA
823026 AAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGATTTGCTTCACTAC
1 AAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGATTTGCTTCACTAC
823091 TCTTCGGTGAAGGCTTACAAATTACCCG
66 TCTTC-GTGAAGGCTTACAAATTACCCG
* * * * *
823119 AAGGATTTAATCATCATGCTCGAAATACTTACTGATGG--C---CTGAAGGACTT-CATCATTA-
1 AAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGATTTGCTTCACTAC
** * ** **
823177 TGCTT--AAAAGACTTACTGATGGCCCG
66 T-CTTCGTGAAGGCTTACAAATTACCCG
* * *
823203 AAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGGTTTGCTTCACTAC
1 AAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGATTTGCTTCACTAC
*
823268 TCTTCCGTGAAGGCTTACAAATTACCCT
66 TCTT-CGTGAAGGCTTACAAATTACCCG
**
823296 AAGGATTTAATCATCATGCTTAAAAGACTTACTGATGGC
1 AAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGC
823335 CCTAAGGATT
Statistics
Matches: 173, Mismatches: 32, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
84 49 0.28
86 2 0.01
87 9 0.05
88 9 0.05
89 8 0.05
90 9 0.05
91 2 0.01
93 85 0.49
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (92 bp):
AAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGATTTGCTTCACTAC
TCTTCGTGAAGGCTTACAAATTACCCG
Found at i:823241 original size:177 final size:177
Alignment explanation
Indices: 822938--823388 Score: 688
Period size: 177 Copynumber: 2.5 Consensus size: 177
822928 TTACTGATGG
* * *
822938 CCCGAATGATTTAATCATCATGCTCGAAAGACTTACTGATGACCCGAAGGACTTCATCATCATGC
1 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGACTTCATCATCATGC
* ** *
823003 TCGAAAGACTTACTGATGACCTAAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCACT
66 TCGAAAGACTTACTGATGGCCCGAAGGACTTAATCATCATGCTCGAAAGACTTACTGATGGCACT
*
823068 TACTGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTACAAATTA
131 TACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTACAAATTA
* *
823115 CCCGAAGGATTTAATCATCATGCTCGAAATACTTACTGATGGCCTGAAGGACTTCATCATTATGC
1 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGACTTCATCATCATGC
** *
823180 TTAAAAGACTTACTGATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGCACT
66 TCGAAAGACTTACTGATGGCCCGAAGGACTTAATCATCATGCTCGAAAGACTTACTGATGGCACT
*
823245 TACTGATGGGTTTGCTTCACTACTCTTCCGTGAAGGCTTACAAATTA
131 TACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTACAAATTA
* ** * * *
823292 CCCTAAGGATTTAATCATCATGCTTAAAAGACTTACTGATGGCCCT-AAGGATTTAAGCATCATG
1 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGG-CCTGAAGGACTTCATCATCATG
* *
823356 CTCGAAAGACTTATTGATGGCCCGAATGACTTA
65 CTCGAAAGACTTACTGATGGCCCGAAGGACTTA
823389 CTAAGTGCGA
Statistics
Matches: 246, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
177 243 0.99
178 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (177 bp):
CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGACTTCATCATCATGC
TCGAAAGACTTACTGATGGCCCGAAGGACTTAATCATCATGCTCGAAAGACTTACTGATGGCACT
TACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTACAAATTA
Found at i:823247 original size:13 final size:13
Alignment explanation
Indices: 823229--823253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
823219 TGCTCGAAAG
823229 ACTTACTGATGGC
1 ACTTACTGATGGC
823242 ACTTACTGATGG
1 ACTTACTGATGG
823254 GTTTGCTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (13 bp):
ACTTACTGATGGC
Found at i:826766 original size:21 final size:21
Alignment explanation
Indices: 826737--826783 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
826727 ATGTATGTAA
*
826737 AATGTTTAAATAAATACATGT
1 AATGCTTAAATAAATACATGT
826758 AATGCTTAAATAAATACATGT
1 AATGCTTAAATAAATACATGT
826779 AATGC
1 AATGC
826784 AAATGCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.34
Consensus pattern (21 bp):
AATGCTTAAATAAATACATGT
Found at i:833617 original size:53 final size:53
Alignment explanation
Indices: 833505--833809 Score: 384
Period size: 53 Copynumber: 5.8 Consensus size: 53
833495 GATAGGTCCT
* * *** *
833505 CTCCCTCTTG-TTCAGGGATTAAGGAACGCGAACAATCTTCTAAAAATCGAGTTCG
1 CTCCCTCTTGCTTCAGGGAGT-A-GAACTCGAACAATCTTCTGCCAA-CGGGTTCG
* ** * ** *
833560 CTCCCTATTGCTTCAAAGAGTAGAACTCGAATAATAGTCTGCCTACGGGTTCG
1 CTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCAACGGGTTCG
833613 CTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCAACGGGTTCG
1 CTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCAACGGGTTCG
* *
833666 CTCCCTCTTGCTTCAGAGAGTAAAACTCGAACAATCTTCTGCCAACGGGTTCG
1 CTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCAACGGGTTCG
* * *
833719 CTCCCTCTTGCTTCAGGGAGTAGAACTCGAATAATCTTCTGCCTAC-AG-TC-
1 CTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCAACGGGTTCG
*
833769 CTCCCTCTTGCTTCAGGGAGTAAAACTCGAACAATCTTCTG
1 CTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTG
833810 GTGTGATTCT
Statistics
Matches: 220, Mismatches: 29, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
50 39 0.18
51 2 0.01
52 1 0.00
53 146 0.66
54 15 0.07
55 10 0.05
56 7 0.03
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (53 bp):
CTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCAACGGGTTCG
Found at i:834191 original size:42 final size:42
Alignment explanation
Indices: 834143--834224 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
834133 TTACAAATTA
* *
834143 CCCGAAGAATTTAATCATCTTGCTCAAAAGACTTACTGATGG
1 CCCGAAGAACTTAATCATCATGCTCAAAAGACTTACTGATGG
* * * *
834185 CCCGAAGGACTTCATCATCATGTTCGAAAGACTTACTGAT
1 CCCGAAGAACTTAATCATCATGCTCAAAAGACTTACTGAT
834225 AGGTTTGCTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (42 bp):
CCCGAAGAACTTAATCATCATGCTCAAAAGACTTACTGATGG
Found at i:834295 original size:122 final size:128
Alignment explanation
Indices: 834060--834611 Score: 707
Period size: 135 Copynumber: 4.3 Consensus size: 128
834050 AAGGCTTAAA
* *
834060 ATGGCCCGAAGGACTT-ATCATCTTGCTCGAAAGACTTAC-T-G-A-T--GGATTTGCTTCACTA
1 ATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTACATGGCACTAAGGGTTTGCTTCACTA
* * * * *
834118 CTATTCGGTGAAGGCTTACAAATTACCCGAAGAATTTAATCATCTTGCTCAAAAGACTTACTG
66 CTCTTCCGTGAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTG
*
834181 ATGGCCCGAAGGACTTCATCATCATGTTCGAAAGACTTAC-T-G-A-T-A-GGTTTGCTTCACTA
1 ATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTACATGGCACTAAGGGTTTGCTTCACTA
* *
834240 CTCTTCCGTGAAGGCTTACAAATTTCCCAAAGGATTTAATCATCATGCTCGAAAGACTTACTG
66 CTCTTCCGTGAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTG
*
834303 ATGGCTCGAAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGGTTTGC
1 ATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTAC--ATGGCAC-TA---A-GGGTTTGC
* * *
834368 TTCACTACTCTTTCGTGAAGGCTTACAAATTTCCCGTAGGATTTAATCATCATGCTCGAAAGACT
59 TTCACTACTCTTCCGTGAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACT
834433 TACTG
124 TACTG
*
834438 ATGGCTCGAAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTAATGGGTTTGC
1 ATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTAC--ATGG--C--ACTAA-GGGTTTGC
* *
834503 TTCACTACTCTTTCGTGAAGGCTTACAAATTACCCTAAGGATTTAATCATCATGCTCGAAAGACT
59 TTCACTACTCTTCCGTGAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACT
834568 TACTG
124 TACTG
* * *
834573 ATGGCCCGAAGGATTTAAGCATCATGCTCGAAAGACTTA
1 ATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTA
834612 TTAATGGCCC
Statistics
Matches: 390, Mismatches: 22, Indels: 24
0.89 0.05 0.06
Matches are distributed among these distances:
121 16 0.04
122 132 0.34
125 1 0.00
126 1 0.00
127 1 0.00
129 1 0.00
133 1 0.00
135 232 0.59
137 1 0.00
138 2 0.01
139 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (128 bp):
ATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTACATGGCACTAAGGGTTTGCTTCACTA
CTCTTCCGTGAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTG
Found at i:834311 original size:20 final size:20
Alignment explanation
Indices: 834286--834349 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
834276 TAATCATCAT
834286 GCTCGAAAGACTTACTGATG
1 GCTCGAAAGACTTACTGATG
* *
834306 GCTCGAAGGACTTCATCATCAT-
1 GCTCGAAAGACTT-A-C-TGATG
834328 GCTCGAAAGACTTACTGATG
1 GCTCGAAAGACTTACTGATG
834348 GC
1 GC
834350 ACTTACTGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
19 3 0.08
20 15 0.42
21 2 0.06
22 13 0.36
23 3 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (20 bp):
GCTCGAAAGACTTACTGATG
Found at i:834324 original size:42 final size:42
Alignment explanation
Indices: 834269--834626 Score: 193
Period size: 42 Copynumber: 8.1 Consensus size: 42
834259 AAATTTCCCA
*
834269 AAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCTCG
1 AAGGATTTCATCATCATGCTCGAAAGACTTACTGATGGCTCG
*
834311 AAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTG
1 AAGGATTTCATCATCATGCTCGAAAGACTTACTGATGG--C-T-C-G
* * * * * ** ** *
834358 ATGGGTTTGCTTCA-CTACT-CTTTCGTGAAGGCTTACAAATTTCCCG
1 AAGGATTT-CATCATC-A-TGC--TCG-AAAGACTTACTGATGGCTCG
* *
834404 TAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCTCG
1 AAGGATTTCATCATCATGCTCGAAAGACTTACTGATGGCTCG
* *
834446 AAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACT
1 AAGGATTTCATCATCATGCTCGAAAGACTTACTGATGG--C-T-CG
* * * * ** ** * *
834492 AATGGGTTTGCTTCA-CTACT-CTTTCGTGAAGGCTTACAAATTACCCT
1 AA-GGATTT-CATCATC-A-TGC--TCG-AAAGACTTACTGATGGCTCG
* *
834539 AAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCG
1 AAGGATTTCATCATCATGCTCGAAAGACTTACTGATGGCTCG
* * * * *
834581 AAGGATTTAAGCATCATGCTCGAAAGACTTATTAATGGCCCG
1 AAGGATTTCATCATCATGCTCGAAAGACTTACTGATGGCTCG
834623 AAGG
1 AAGG
834627 TCTTATGGAT
Statistics
Matches: 238, Mismatches: 52, Indels: 52
0.70 0.15 0.15
Matches are distributed among these distances:
42 140 0.59
43 6 0.03
44 4 0.02
45 12 0.05
46 17 0.07
47 17 0.07
48 12 0.05
49 4 0.02
50 6 0.03
51 20 0.08
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (42 bp):
AAGGATTTCATCATCATGCTCGAAAGACTTACTGATGGCTCG
Found at i:834332 original size:22 final size:21
Alignment explanation
Indices: 834278--834341 Score: 78
Period size: 20 Copynumber: 3.0 Consensus size: 21
834268 AAAGGATTTA
834278 ATCATCATGCTCGAAAGACTT
1 ATCATCATGCTCGAAAGACTT
* *
834299 A-C-TGATGGCTCGAAGGACTT
1 ATCATCAT-GCTCGAAAGACTT
834319 CATCATCATGCTCGAAAGACTT
1 -ATCATCATGCTCGAAAGACTT
834341 A
1 A
834342 CTGATGGCAC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
19 3 0.09
20 13 0.37
21 3 0.09
22 13 0.37
23 3 0.09
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (21 bp):
ATCATCATGCTCGAAAGACTT
Found at i:834355 original size:13 final size:13
Alignment explanation
Indices: 834337--834361 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
834327 TGCTCGAAAG
834337 ACTTACTGATGGC
1 ACTTACTGATGGC
834350 ACTTACTGATGG
1 ACTTACTGATGG
834362 GTTTGCTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (13 bp):
ACTTACTGATGGC
Found at i:834446 original size:20 final size:20
Alignment explanation
Indices: 834421--834484 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
834411 TAATCATCAT
834421 GCTCGAAAGACTTACTGATG
1 GCTCGAAAGACTTACTGATG
* *
834441 GCTCGAAGGACTTCATCATCAT-
1 GCTCGAAAGACTT-A-C-TGATG
834463 GCTCGAAAGACTTACTGATG
1 GCTCGAAAGACTTACTGATG
834483 GC
1 GC
834485 ACTTACTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
19 3 0.08
20 15 0.42
21 2 0.06
22 13 0.36
23 3 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (20 bp):
GCTCGAAAGACTTACTGATG
Found at i:834467 original size:22 final size:21
Alignment explanation
Indices: 834413--834476 Score: 78
Period size: 20 Copynumber: 3.0 Consensus size: 21
834403 GTAGGATTTA
834413 ATCATCATGCTCGAAAGACTT
1 ATCATCATGCTCGAAAGACTT
* *
834434 A-C-TGATGGCTCGAAGGACTT
1 ATCATCAT-GCTCGAAAGACTT
834454 CATCATCATGCTCGAAAGACTT
1 -ATCATCATGCTCGAAAGACTT
834476 A
1 A
834477 CTGATGGCAC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
19 3 0.09
20 13 0.37
21 3 0.09
22 13 0.37
23 3 0.09
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (21 bp):
ATCATCATGCTCGAAAGACTT
Found at i:834651 original size:20 final size:20
Alignment explanation
Indices: 834598--834652 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
834588 TAAGCATCAT
*
834598 GCTCGAAAGACTTATTAATG
1 GCTCGAAAGACTTATGAATG
* * * *
834618 GCCCGAAGGTCTTATGGATG
1 GCTCGAAAGACTTATGAATG
*
834638 GCTCGAATGACTTAT
1 GCTCGAAAGACTTAT
834653 CATCTTGCTA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (20 bp):
GCTCGAAAGACTTATGAATG
Found at i:836807 original size:156 final size:156
Alignment explanation
Indices: 836631--836947 Score: 501
Period size: 156 Copynumber: 2.0 Consensus size: 156
836621 GGAATAGCTC
* *
836631 AGCTTTATTGTATACATATAATATAATCACTTTTATCAGGCTAGCTGAATTCTATCCATAAAGCC
1 AGCTTTATTGTATACATATAATATAATCACCTTTATCAGGCTAGCTGAATTATATCCATAAAGCC
* *
836696 GGGGCATTTAACCAATTTCTCTAGAGGGACAACTCAAGCTTTATT-TAATACATATAATATTATA
66 GGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGT-ATACATATAATATTAAA
*
836760 ATCTGGGTATACGGATCCAATTTCTTA
130 ATCTGGGTATACAGATCCAATTTCTTA
* * *
836787 AGCTTTATTGTATATATATAATATAATCACCTTTATCAGGCTAGCTGAATTATGTCTATAAAGCC
1 AGCTTTATTGTATACATATAATATAATCACCTTTATCAGGCTAGCTGAATTATATCCATAAAGCC
* * * * *
836852 GGGGCATTTAACCAATTGCTTTATAGGGATAGCTTAAGCTTTATTGTATACATATAATATTAAAA
66 GGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATACATATAATATTAAAA
836917 TCTGGGTATACAGATCCAATTTCTTA
131 TCTGGGTATACAGATCCAATTTCTTA
836943 AGCTT
1 AGCTT
836948 GTCAAGAAGA
Statistics
Matches: 147, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
156 146 0.99
157 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (156 bp):
AGCTTTATTGTATACATATAATATAATCACCTTTATCAGGCTAGCTGAATTATATCCATAAAGCC
GGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATACATATAATATTAAAA
TCTGGGTATACAGATCCAATTTCTTA
Found at i:837857 original size:13 final size:13
Alignment explanation
Indices: 837826--837851 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
837816 TAACCAAATG
837826 AGGATACAGATCC
1 AGGATACAGATCC
837839 AGGATACAGATCC
1 AGGATACAGATCC
837852 GAGATAGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (13 bp):
AGGATACAGATCC
Found at i:843660 original size:16 final size:16
Alignment explanation
Indices: 843632--843678 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 16
843622 TAATATGAAT
843632 CCTAAAC-AAATTAAA
1 CCTAAACTAAATTAAA
843647 CCTAAACTAAATTAAA
1 CCTAAACTAAATTAAA
* *
843663 CATGAA-TAAATTAAA
1 CCTAAACTAAATTAAA
843678 C
1 C
843679 TTCACGCGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 17 0.59
16 12 0.41
ACGTcount: A:0.57, C:0.17, G:0.02, T:0.23
Consensus pattern (16 bp):
CCTAAACTAAATTAAA
Found at i:845660 original size:2 final size:2
Alignment explanation
Indices: 845653--845680 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
845643 AAATTTAATA
845653 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
845681 TTAAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:845811 original size:15 final size:15
Alignment explanation
Indices: 845791--845822 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
845781 TAATTATCAA
845791 AAAATAACATAAAAT
1 AAAATAACATAAAAT
*
845806 AAAATAACATAACAT
1 AAAATAACATAAAAT
845821 AA
1 AA
845823 TCAAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAATAACATAAAAT
Found at i:846455 original size:20 final size:20
Alignment explanation
Indices: 846430--846479 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
846420 CAAACTTATG
846430 GTATCGATACTGTTCAACCA
1 GTATCGATACTGTTCAACCA
846450 GTATCGATACTGTTCAACCA
1 GTATCGATACTGTTCAACCA
846470 GTATCGATAC
1 GTATCGATAC
846480 CCCTATACCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACTGTTCAACCA
Found at i:847735 original size:21 final size:21
Alignment explanation
Indices: 847693--847737 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
847683 GAAATGGTTA
* **
847693 CGGTGCCATCTGATACGGTTG
1 CGGTGCCATCTGAAACAATTG
847714 CGGTGCCATCTGAAACAATTG
1 CGGTGCCATCTGAAACAATTG
847735 CGG
1 CGG
847738 AATGTACAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.24
Consensus pattern (21 bp):
CGGTGCCATCTGAAACAATTG
Found at i:849652 original size:24 final size:24
Alignment explanation
Indices: 849586--849645 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
849576 TTGTGATTGA
849586 AGGAAGAAGGGATGAGGTATTTAT
1 AGGAAGAAGGGATGAGGTATTTAT
849610 AGGAAGAAGGGATGAGGTATTTAT
1 AGGAAGAAGGGATGAGGTATTTAT
849634 AGGAAGAAGGGA
1 AGGAAGAAGGGA
849646 GGGGGTAGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (24 bp):
AGGAAGAAGGGATGAGGTATTTAT
Found at i:862131 original size:16 final size:15
Alignment explanation
Indices: 862099--862146 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
862089 ACGAGAGATT
862099 AGAGAAGTAGAGAGA
1 AGAGAAGTAGAGAGA
*
862114 AGAGAACGTAG-GAGG
1 AGAGAA-GTAGAGAGA
862129 A-AGAAGTAGAGA-A
1 AGAGAAGTAGAGAGA
862142 AGAGA
1 AGAGA
862147 TGAAGAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
13 5 0.18
14 9 0.32
15 10 0.36
16 4 0.14
ACGTcount: A:0.52, C:0.02, G:0.40, T:0.06
Consensus pattern (15 bp):
AGAGAAGTAGAGAGA
Found at i:866704 original size:23 final size:26
Alignment explanation
Indices: 866647--866700 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 26
866637 ATTTCTCATA
866647 TCCATTCAAACTCTCCCTTGTCTTCTTC
1 TCCATTCAAACTCTCCCTTG--TTCTTC
866675 TCCCATTCAAACTCTCCCTTG-TCTTC
1 T-CCATTCAAACTCTCCCTTGTTCTTC
866701 CATTGTAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 5 0.20
28 1 0.04
29 19 0.76
ACGTcount: A:0.15, C:0.41, G:0.04, T:0.41
Consensus pattern (26 bp):
TCCATTCAAACTCTCCCTTGTTCTTC
Found at i:873060 original size:64 final size:64
Alignment explanation
Indices: 872992--873132 Score: 178
Period size: 64 Copynumber: 2.2 Consensus size: 64
872982 CAAGCTGGAA
* *
872992 TGCATCGATGCATG-GTCTGTGCATCAGTACACAAAATGCATTCGATATTCAAAATATTC-AGGA
1 TGCATCGATGCATGCCT-TGTGCATCAGTACACAAAATGCATTCGAAATTCAAAATATTCAAGG-
873055 G
64 G
* * * **
873056 TGCATCGATGCATGCCTTGTGCATCGGTACATAAAATGTATTCGAAATTCAATTTATTCAAGGG
1 TGCATCGATGCATGCCTTGTGCATCAGTACACAAAATGCATTCGAAATTCAAAATATTCAAGGG
*
873120 TGCATTGATGCAT
1 TGCATCGATGCAT
873133 TACTTTGAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
64 63 0.94
65 4 0.06
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (64 bp):
TGCATCGATGCATGCCTTGTGCATCAGTACACAAAATGCATTCGAAATTCAAAATATTCAAGGG
Found at i:878666 original size:22 final size:21
Alignment explanation
Indices: 878624--878663 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
878614 AAGACTATTT
*
878624 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTAAAATA
878645 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
878664 ATAAAGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAATA
Found at i:879495 original size:21 final size:21
Alignment explanation
Indices: 879469--879523 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
879459 CACATAACAG
879469 GGTGCATCGGTACACCATTAA
1 GGTGCATCGGTACACCATTAA
879490 GGTGCATCGGTACACCATTAA
1 GGTGCATCGGTACACCATTAA
*
879511 GGTGCATTGGTAC
1 GGTGCATCGGTAC
879524 CCCTTCATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (21 bp):
GGTGCATCGGTACACCATTAA
Found at i:879595 original size:20 final size:20
Alignment explanation
Indices: 879570--879607 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
879560 CCATTGTAGC
879570 CAGGGTGCATAGATGCACAA
1 CAGGGTGCATAGATGCACAA
*
879590 CAGGGTGCATCGATGCAC
1 CAGGGTGCATAGATGCAC
879608 TAATTGCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.32, T:0.16
Consensus pattern (20 bp):
CAGGGTGCATAGATGCACAA
Found at i:879703 original size:21 final size:21
Alignment explanation
Indices: 879628--879769 Score: 144
Period size: 21 Copynumber: 6.7 Consensus size: 21
879618 CGGTGTTTGA
* *
879628 GTGCATGGATGCACTACA-TG
1 GTGCATGGATGCACTGCAGGG
* *
879648 GTGCATCGATGCACTAG-TGGCAG
1 GTGCATGGATGCACT-GCAGG--G
* *
879671 GTTCATGAATGCACTGCAGGG
1 GTGCATGGATGCACTGCAGGG
*
879692 GTGCATGGATGCACTACAGGG
1 GTGCATGGATGCACTGCAGGG
*
879713 GTGGATGGATGCACTGCAGGG
1 GTGCATGGATGCACTGCAGGG
* *
879734 GTGCATGGATGCACTGTAGAG
1 GTGCATGGATGCACTGCAGGG
*
879755 GTGCATCGATGCACT
1 GTGCATGGATGCACT
879770 TTGACATTCT
Statistics
Matches: 100, Mismatches: 17, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
20 14 0.14
21 70 0.70
22 1 0.01
23 15 0.15
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.23
Consensus pattern (21 bp):
GTGCATGGATGCACTGCAGGG
Found at i:879766 original size:42 final size:42
Alignment explanation
Indices: 879628--879769 Score: 160
Period size: 42 Copynumber: 3.4 Consensus size: 42
879618 CGGTGTTTGA
* * * *
879628 GTGCATGGATGCACTACA-TGGTGCATCGATGCACTAGTGGCAG
1 GTGCATGGATGCACTGCAGGGGTGCATGGATGCACT-GTAG-AG
* * ** *
879671 GTTCATGAATGCACTGCAGGGGTGCATGGATGCACTACAGGG
1 GTGCATGGATGCACTGCAGGGGTGCATGGATGCACTGTAGAG
*
879713 GTGGATGGATGCACTGCAGGGGTGCATGGATGCACTGTAGAG
1 GTGCATGGATGCACTGCAGGGGTGCATGGATGCACTGTAGAG
*
879755 GTGCATCGATGCACT
1 GTGCATGGATGCACT
879770 TTGACATTCT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 50 0.62
43 16 0.20
44 15 0.19
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.23
Consensus pattern (42 bp):
GTGCATGGATGCACTGCAGGGGTGCATGGATGCACTGTAGAG
Found at i:888485 original size:28 final size:27
Alignment explanation
Indices: 888420--888486 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
888410 TACTGCAACA
*
888420 AAAGAAAAAGAAGTTAAAGATAAAATAT
1 AAAG-AAAAGAAGTTAAAGATAAAATAG
*
888448 AAAGGAAAGAAGATTAAAGA-AAAATAG
1 AAAGAAAAGAAG-TTAAAGATAAAATAG
*
888475 AGAGAAGAAGAA
1 AAAGAA-AAGAA
888487 AAAGTGGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 17 0.52
28 16 0.48
ACGTcount: A:0.67, C:0.00, G:0.21, T:0.12
Consensus pattern (27 bp):
AAAGAAAAGAAGTTAAAGATAAAATAG
Found at i:898956 original size:21 final size:22
Alignment explanation
Indices: 898932--899008 Score: 84
Period size: 23 Copynumber: 3.5 Consensus size: 22
898922 ACCAAAGTGT
898932 CACATA-TTTGTCCCGAATGAC
1 CACATAGTTTGTCCCGAATGAC
* * *
898953 CACATAAGATTATCCCGAAGGAC
1 CACAT-AGTTTGTCCCGAATGAC
* *
898976 CACAAAGTTTTGCCCCGAATGAC
1 CACATAG-TTTGTCCCGAATGAC
898999 CACATAGTTT
1 CACATAGTTT
899009 TGTTCCAAAG
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
21 5 0.11
22 6 0.14
23 33 0.75
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (22 bp):
CACATAGTTTGTCCCGAATGAC
Found at i:899022 original size:23 final size:23
Alignment explanation
Indices: 898970--899024 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
898960 GATTATCCCG
*
898970 AAGGACCACAAAGTTTTGCCCCG
1 AAGGACCACAAAGTTTTGCCCCA
* * **
898993 AATGACCACATAGTTTTGTTCCA
1 AAGGACCACAAAGTTTTGCCCCA
899016 AAGGACCAC
1 AAGGACCAC
899025 GTAGAACCCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (23 bp):
AAGGACCACAAAGTTTTGCCCCA
Found at i:902159 original size:30 final size:30
Alignment explanation
Indices: 902116--902175 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
902106 CCGCCGATAT
*
902116 TCTTTATTTTCTTTTTCTTTTTTATATTTCA
1 TCTTTATTTTCTTTTTCTTTTTGAT-TTTCA
902147 TCTTTA-TTTCTTTTTCTTTTTGATTTTCA
1 TCTTTATTTTCTTTTTCTTTTTGATTTTCA
902176 ATAAGTTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 5 0.18
30 17 0.61
31 6 0.21
ACGTcount: A:0.12, C:0.13, G:0.02, T:0.73
Consensus pattern (30 bp):
TCTTTATTTTCTTTTTCTTTTTGATTTTCA
Found at i:905226 original size:21 final size:21
Alignment explanation
Indices: 905202--905324 Score: 111
Period size: 21 Copynumber: 5.7 Consensus size: 21
905192 TGTCTCGAAT
**
905202 GACCACATATATGTCCCGTAG
1 GACCACATATATGTCCCAAAG
* *
905223 GACCACATAGAATTGTCCCATAG
1 GACCACATA-TA-TGTCCCAAAG
* *
905246 GACCACATATATGTTCCAAAA
1 GACCACATATATGTCCCAAAG
* *
905267 GACCAAATATATGTCCAAGAAG
1 GACCACATATATGTCCCA-AAG
* * *
905289 GACCTCATATATGTTCCACAG
1 GACCACATATATGTCCCAAAG
*
905310 GATCACATATATGTC
1 GACCACATATATGTC
905325 TCGGAGGACC
Statistics
Matches: 81, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
21 45 0.56
22 18 0.22
23 18 0.22
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.24
Consensus pattern (21 bp):
GACCACATATATGTCCCAAAG
Found at i:912184 original size:22 final size:22
Alignment explanation
Indices: 912158--912205 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
912148 CCACAGCTCG
912158 TATAAAATG-CACCGAAGTG-CCA
1 TATAAAATGTC-CCGAAG-GACCA
912180 TATAAAATGTCCCGAAGGACCA
1 TATAAAATGTCCCGAAGGACCA
912202 TATA
1 TATA
912206 TATATCTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 1 0.04
22 22 0.92
23 1 0.04
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.21
Consensus pattern (22 bp):
TATAAAATGTCCCGAAGGACCA
Found at i:912274 original size:21 final size:21
Alignment explanation
Indices: 912245--912319 Score: 80
Period size: 21 Copynumber: 3.5 Consensus size: 21
912235 CCATAGGACC
912245 ACCACATATATGTTCCAAAGG
1 ACCACATATATGTTCCAAAGG
*
912266 ACCAAATATATG-TCCAAGAAGG
1 ACCACATATATGTTCC-A-AAGG
* * *
912288 ACCTCTTATATGTTCCAAAAG
1 ACCACATATATGTTCCAAAGG
*
912309 ATCACATATAT
1 ACCACATATAT
912320 ATCTCAGAGG
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
20 3 0.07
21 23 0.53
22 14 0.33
23 3 0.07
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (21 bp):
ACCACATATATGTTCCAAAGG
Found at i:930600 original size:81 final size:83
Alignment explanation
Indices: 930491--930690 Score: 271
Period size: 89 Copynumber: 2.4 Consensus size: 83
930481 GCACCTAGCA
* *
930491 AAAGGGAGCCAACCTAAGGATATTCCTTGG-A-GCCTACCCAAGGGTATACTTAGGTCCGTAGGG
1 AAAGGGAACCAACCTAAGGATATACCTTGGCAGGCCTACCCAAGGGTATACTTAGGTCCGTAGGG
*
930554 TTACCCTATGCAT-ACAAC
66 TTACCCTAAGC-TCACAAC
*
930572 AAAGGGAACCAACCTAAGGATATACCTTGGGGCCTATGGGCCTACCCAAGGGTATCCTTAGGTCC
1 AAAGGGAACCAACCTAAGGATATACCTT--GG-C-A--GGCCTACCCAAGGGTATACTTAGGTCC
930637 GTAGGGTTACCCTAAGCTCACAAC
60 GTAGGGTTACCCTAAGCTCACAAC
*
930661 AAAGGGAACCAACCTAAGGATATGCCTTGG
1 AAAGGGAACCAACCTAAGGATATACCTTGG
930691 GGCCACGGGC
Statistics
Matches: 105, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
81 26 0.25
83 2 0.02
86 1 0.01
87 2 0.02
88 1 0.01
89 73 0.70
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.20
Consensus pattern (83 bp):
AAAGGGAACCAACCTAAGGATATACCTTGGCAGGCCTACCCAAGGGTATACTTAGGTCCGTAGGG
TTACCCTAAGCTCACAAC
Found at i:930673 original size:89 final size:88
Alignment explanation
Indices: 930522--930703 Score: 303
Period size: 89 Copynumber: 2.1 Consensus size: 88
930512 ATTCCTTGGA
*
930522 GCCTACCCAAGGGTATACTTAGGTCCGTAGGGTTACCCTATGCATACAACAAAGGGAACCAACCT
1 GCCTACCCAAGGGTATACTTAGGTCCGTAGGGTTACCCTAAGCATACAACAAAGGGAACCAACCT
*
930587 AAGGATATACCTTGGGGCCTATGG
66 AAGGATATACCTTGGGGCC-ACGG
*
930611 GCCTACCCAAGGGTATCCTTAGGTCCGTAGGGTTACCCTAAGC-TCACAACAAAGGGAACCAACC
1 GCCTACCCAAGGGTATACTTAGGTCCGTAGGGTTACCCTAAGCAT-ACAACAAAGGGAACCAACC
*
930675 TAAGGATATGCCTTGGGGCCACGG
65 TAAGGATATACCTTGGGGCCACGG
930699 GCCTA
1 GCCTA
930704 AGGATACCCT
Statistics
Matches: 88, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
88 9 0.10
89 79 0.90
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (88 bp):
GCCTACCCAAGGGTATACTTAGGTCCGTAGGGTTACCCTAAGCATACAACAAAGGGAACCAACCT
AAGGATATACCTTGGGGCCACGG
Found at i:931929 original size:26 final size:27
Alignment explanation
Indices: 931887--931938 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 27
931877 GTTTAGATGT
931887 ATTTTAGGTCATTTTACACTTTAGGGC
1 ATTTTAGGTCATTTTACACTTTAGGGC
931914 ATTTT-GGTCATTTTACACTTTAGGG
1 ATTTTAGGTCATTTTACACTTTAGGG
931939 GTATTTCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.46
Consensus pattern (27 bp):
ATTTTAGGTCATTTTACACTTTAGGGC
Found at i:937618 original size:19 final size:19
Alignment explanation
Indices: 937559--937620 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
937549 AAATCTAATG
* *
937559 ATTTTGAAAATATTTTAATA
1 ATTTT-AAATTATTTTTATA
* * * *
937579 ATTTCATATTATTTATCTA
1 ATTTTAAATTATTTTTATA
937598 ATTTTAAATTATTTTTATA
1 ATTTTAAATTATTTTTATA
937617 ATTT
1 ATTT
937621 GTAATAGTTG
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
19 28 0.88
20 4 0.12
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (19 bp):
ATTTTAAATTATTTTTATA
Found at i:941442 original size:21 final size:21
Alignment explanation
Indices: 941416--941465 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
941406 TGCCGCTGCC
*
941416 ATCATCATCA-CATTCCTCCTT
1 ATCATCATCATCA-TCCTCATT
* *
941437 ATCATCAGCATCATGCTCATT
1 ATCATCATCATCATCCTCATT
941458 ATCATCAT
1 ATCATCAT
941466 TATCTTGACT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.28, C:0.32, G:0.04, T:0.36
Consensus pattern (21 bp):
ATCATCATCATCATCCTCATT
Found at i:947373 original size:52 final size:53
Alignment explanation
Indices: 947257--947374 Score: 148
Period size: 54 Copynumber: 2.2 Consensus size: 53
947247 ACTCGAGCTT
* * *
947257 GGAATATTGATATTGCACTAATAAAAACTAGTTGTTTTTTTTATCATTAGGCTG
1 GGAATATCGATATTGCACTAATAAAAACTAGTTG-TTTTTTTACCATTAGGATG
* * * *
947311 GGAGTATCGATATTGCGCTAATAAAAACTAGTTG-TTTTTTACCGTTGGGATG
1 GGAATATCGATATTGCACTAATAAAAACTAGTTGTTTTTTTACCATTAGGATG
*
947363 GGAATGTCGATA
1 GGAATATCGATA
947375 CTAGGTTTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
52 24 0.44
54 31 0.56
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (53 bp):
GGAATATCGATATTGCACTAATAAAAACTAGTTGTTTTTTTACCATTAGGATG
Found at i:954907 original size:8 final size:8
Alignment explanation
Indices: 954896--954958 Score: 51
Period size: 8 Copynumber: 7.9 Consensus size: 8
954886 CAAAAATATT
954896 TTATTATA
1 TTATTATA
954904 TTA-TATA
1 TTATTATA
954911 TTTATT-TA
1 -TTATTATA
954919 TTTATT-TA
1 -TTATTATA
954927 TTATTATTA
1 TTATTA-TA
*
954936 TTAATATA
1 TTATTATA
* *
954944 TTTTTATT
1 TTATTATA
954952 TTATTAT
1 TTATTAT
954959 TTTTGCAGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
7 9 0.20
8 29 0.63
9 8 0.17
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (8 bp):
TTATTATA
Found at i:954959 original size:25 final size:25
Alignment explanation
Indices: 954894--954959 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
954884 AACAAAAATA
* * *
954894 TTTTATTATATTATATATTTATTTAT
1 TTTTATTTTATTAT-TATTAATATAT
*
954920 TTATT-TATTATTATTATTAATATAT
1 TT-TTATTTTATTATTATTAATATAT
954945 TTTTATTTTATTATT
1 TTTTATTTTATTATT
954960 TTTGCAGGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
24 2 0.06
25 20 0.61
26 9 0.27
27 2 0.06
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (25 bp):
TTTTATTTTATTATTATTAATATAT
Found at i:954959 original size:31 final size:30
Alignment explanation
Indices: 954892--954959 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 30
954882 GAAACAAAAA
954892 TATT-TTATTATATTATATATTTATTTATT
1 TATTATTATTATATTATATATTTATTTATT
954921 TATTTATTATTATTATTA-ATATATT-TTTATTT
1 TA-TTATTATTA-TATTATATAT-TTATTTA-TT
954953 TATTATT
1 TATTATT
954960 TTTGCAGGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
29 2 0.06
30 2 0.06
31 19 0.56
32 11 0.32
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (30 bp):
TATTATTATTATATTATATATTTATTTATT
Found at i:960462 original size:37 final size:37
Alignment explanation
Indices: 960420--960490 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
960410 TTAAAATAAA
*
960420 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAG
1 TTTTGTCTCTCTTGAGACAGTTTCCCGTGAAACAAAG
*
960457 TTTTGTCTCTCTTGAGACAGTTTCTCGTGAAACA
1 TTTTGTCTCTCTTGAGACAGTTTCCCGTGAAACA
960491 CCAATCTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (37 bp):
TTTTGTCTCTCTTGAGACAGTTTCCCGTGAAACAAAG
Found at i:960547 original size:67 final size:68
Alignment explanation
Indices: 960439--960590 Score: 200
Period size: 67 Copynumber: 2.2 Consensus size: 68
960429 TCTTGAGACA
* * * * * *
960439 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCGTGAAACAC-CAATCTTTGAA
1 GTTTCTCTTGAAACAAAATTTTGCCTCTCTGGAGACAGTTTCTCGTGAAACACAAAACCTTTGAA
960503 -TAT
66 GT-T
*
960506 GTTTCTCTTGAAACAAAATTTTGCCTCTCTGGAGACAGTTTCTCTTGAAACACAAAAAACCTTTG
1 GTTTCTCTTGAAACAAAATTTTGCCTCTCTGGAGACAGTTTCTCGTGAAACAC--AAAACCTTTG
960571 AAGTT
64 AAGTT
960576 GTTTCTCTTGAAACA
1 GTTTCTCTTGAAACA
960591 CAAAAAAACC
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
67 48 0.65
70 25 0.34
71 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.36
Consensus pattern (68 bp):
GTTTCTCTTGAAACAAAATTTTGCCTCTCTGGAGACAGTTTCTCGTGAAACACAAAACCTTTGAA
GTT
Found at i:960602 original size:34 final size:33
Alignment explanation
Indices: 960543--960657 Score: 132
Period size: 34 Copynumber: 3.6 Consensus size: 33
960533 TCTGGAGACA
* * *
960543 GTTTCTCTTGAAACACAAAAAACCTTTGAAGTT
1 GTTTCTCTTGAAACACAAAAAACCTTTAAAATC
960576 GTTTCTCTTGAAACACAAAAAAACCTTTAAAATC
1 GTTTCTCTTGAAACAC-AAAAAACCTTTAAAATC
960610 GTTTCTCTTG--A-A-AAAAAACCTTTGAAAA-C
1 GTTTCTCTTGAAACACAAAAAACCTTT-AAAATC
**
960639 AATTCTCTTGAAACACAAA
1 GTTTCTCTTGAAACACAAA
960658 GACCTTCGAG
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
29 20 0.28
30 4 0.06
31 2 0.03
32 2 0.03
33 19 0.27
34 24 0.34
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (33 bp):
GTTTCTCTTGAAACACAAAAAACCTTTAAAATC
Found at i:960627 original size:29 final size:29
Alignment explanation
Indices: 960592--960651 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
960582 CTTGAAACAC
**
960592 AAAAAAACCTTT-AAAATCGTTTCTCTTGA
1 AAAAAAACCTTTGAAAA-CAATTCTCTTGA
960621 AAAAAAACCTTTGAAAACAATTCTCTTGA
1 AAAAAAACCTTTGAAAACAATTCTCTTGA
960650 AA
1 AA
960652 CACAAAGACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.47, C:0.17, G:0.07, T:0.30
Consensus pattern (29 bp):
AAAAAAACCTTTGAAAACAATTCTCTTGA
Found at i:960810 original size:84 final size:82
Alignment explanation
Indices: 960652--960837 Score: 259
Period size: 84 Copynumber: 2.3 Consensus size: 82
960642 TCTCTTGAAA
* *
960652 CACAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTCAAGG
1 CACAAAGACCTTCGAGTTCGACTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGG
*
960717 CTAGAAAGGGTTATCTGT
66 CAAGAAAGGGTTATCT-T
* * ** *
960735 CAACAAAGACCTCCGAGTTCGACTCCACTCAGCTCAAAGGCACCATCATTTGTAGCATAGCTCAA
1 C-ACAAAGACCTTCGAGTTCGACTACACTCAGCTCAAAGGCA-CATCATTTACAGCATAACTCAA
960800 GGCAAG-AAGGGTTATCTT
64 GGCAAGAAAGGGTTATCTT
960818 C-CAAAGACCTTCGAGTTCGA
1 CACAAAGACCTTCGAGTTCGA
960838 GGGCGTATCA
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
81 18 0.20
83 3 0.03
84 47 0.51
85 24 0.26
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (82 bp):
CACAAAGACCTTCGAGTTCGACTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGG
CAAGAAAGGGTTATCTT
Found at i:961327 original size:33 final size:33
Alignment explanation
Indices: 961252--961332 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 33
961242 AAAATAAATC
* * *
961252 AACGTATTTGAGTCCTATTAAAACACTATAACT
1 AACGCATTTGAGTCCTATTAAAACACTAAAACG
* *
961285 AACGTATTTGAGTCCTATTGAAACACTAAAACCG
1 AACGCATTTGAGTCCTATTAAAACACTAAAA-CG
961319 AA-GCATTTGAGTCC
1 AACGCATTTGAGTCC
961333 AAGTATGACT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
33 40 0.93
34 3 0.07
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.30
Consensus pattern (33 bp):
AACGCATTTGAGTCCTATTAAAACACTAAAACG
Found at i:961884 original size:4 final size:4
Alignment explanation
Indices: 961867--961912 Score: 71
Period size: 4 Copynumber: 12.2 Consensus size: 4
961857 TGATAATACA
961867 TTAT TTA- TTA- TTAT TTA- TTAT TTAT TTAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
961912 T
1 T
961913 ATTCATTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
3 9 0.22
4 31 0.77
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:965336 original size:21 final size:21
Alignment explanation
Indices: 965312--965363 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
965302 CGATGAACAG
*
965312 TATCAATACTGATGCAAGTAA
1 TATCGATACTGATGCAAGTAA
*
965333 TATCGATACTGATGCAAGTAG
1 TATCGATACTGATGCAAGTAA
965354 TATCGATACT
1 TATCGATACT
965364 AATGTGGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (21 bp):
TATCGATACTGATGCAAGTAA
Found at i:965378 original size:20 final size:20
Alignment explanation
Indices: 965353--965401 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
965343 GATGCAAGTA
* *
965353 GTATCGATACTAATGTGG-AG
1 GTATCGATACCAA-GAGGAAG
965373 GTATCGATACCAAGAGGAAG
1 GTATCGATACCAAGAGGAAG
965393 GTATCGATA
1 GTATCGATA
965402 TTGAAACTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (20 bp):
GTATCGATACCAAGAGGAAG
Found at i:966261 original size:137 final size:137
Alignment explanation
Indices: 966015--966281 Score: 399
Period size: 137 Copynumber: 1.9 Consensus size: 137
966005 TTTGACAGAT
* * *
966015 TTTGTATATGATGGTTATCAATCGATTTTGTTTAATGCATGTGTTGCATTTTCGTATCAATACTA
1 TTTGTATATGAAGGTTATCAATCGATTTTGTTTAATGCATATGTTACATTTTCGTATCAATACTA
* * * *
966080 TTTGTACTTTCGGCACTAGGTGTGCAACCATGGTATTCATAATGAGTATGTGAATTACCATTTCG
66 TATGTACTTTAGGCACTAGGTGTGCAACAATGGAATTCATAATGAGTATGTGAATTACCATTTCG
966145 ACATACA
131 ACATACA
* * *
966152 TTTGTGTATGAAGGTTATCGATCGATTTTGTTTAATGCATATGTTACATTTTCGTATCAGTACTA
1 TTTGTATATGAAGGTTATCAATCGATTTTGTTTAATGCATATGTTACATTTTCGTATCAATACTA
* * * **
966217 TATGTACTTTAGGCACTATGTGTGCATCAATGGAATTCATAATGAGTTTGTGAATTTTCATTTCG
66 TATGTACTTTAGGCACTAGGTGTGCAACAATGGAATTCATAATGAGTATGTGAATTACCATTTCG
966282 GCAGTTAGGT
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
137 115 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (137 bp):
TTTGTATATGAAGGTTATCAATCGATTTTGTTTAATGCATATGTTACATTTTCGTATCAATACTA
TATGTACTTTAGGCACTAGGTGTGCAACAATGGAATTCATAATGAGTATGTGAATTACCATTTCG
ACATACA
Found at i:967781 original size:94 final size:94
Alignment explanation
Indices: 967620--967810 Score: 373
Period size: 94 Copynumber: 2.0 Consensus size: 94
967610 GGTAGGCGAT
967620 GTTGCTAATGTTTCTTAATTTGAAACAAGGTGATCGAGCAGTACATGAGTATGAGACTGAGTATA
1 GTTGCTAATGTTTCTTAATTTGAAACAAGGTGATCGAGCAGTACATGAGTATGAGACTGAGTATA
967685 ACAAGCTGAGTCATTTTGCTATTGAAGTA
66 ACAAGCTGAGTCATTTTGCTATTGAAGTA
*
967714 GTTGCTGATGTTTCTTAATTTGAAACAAGGTGATCGAGCAGTACATGAGTATGAGACTGAGTATA
1 GTTGCTAATGTTTCTTAATTTGAAACAAGGTGATCGAGCAGTACATGAGTATGAGACTGAGTATA
967779 ACAAGCTGAGTCATTTTGCTATTGAAGTA
66 ACAAGCTGAGTCATTTTGCTATTGAAGTA
967808 GTT
1 GTT
967811 CCCAATGAAA
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 96 1.00
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.34
Consensus pattern (94 bp):
GTTGCTAATGTTTCTTAATTTGAAACAAGGTGATCGAGCAGTACATGAGTATGAGACTGAGTATA
ACAAGCTGAGTCATTTTGCTATTGAAGTA
Found at i:971608 original size:7 final size:7
Alignment explanation
Indices: 971582--971632 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
971572 TTATATGTCA
971582 ATATGA-
1 ATATGAG
*
971588 ATATAAG
1 ATATGAG
971595 AATATGAG
1 -ATATGAG
*
971603 ATATGAT
1 ATATGAG
*
971610 ATATGTG
1 ATATGAG
971617 ATAATGAG
1 AT-ATGAG
971625 ATATGAG
1 ATATGAG
971632 A
1 A
971633 CTCTAAGAGA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
6 5 0.14
7 19 0.53
8 12 0.33
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (7 bp):
ATATGAG
Found at i:971613 original size:22 final size:21
Alignment explanation
Indices: 971582--971630 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
971572 TTATATGTCA
971582 ATATGAATATAAGA-ATATGAG
1 ATATGAATATAAGATA-ATGAG
**
971603 ATATGATATATGTGATAATGAG
1 ATATGA-ATATAAGATAATGAG
971625 ATATGA
1 ATATGA
971631 GACTCTAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 6 0.25
22 17 0.71
23 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (21 bp):
ATATGAATATAAGATAATGAG
Found at i:971917 original size:21 final size:21
Alignment explanation
Indices: 971891--971969 Score: 90
Period size: 21 Copynumber: 3.8 Consensus size: 21
971881 TCCTTAAGGA
*
971891 GTGGTCCTTCGGGACATATAT
1 GTGGTCCTTCGAGACATATAT
*
971912 GTGGTCCTTTC-AGACATCTAT
1 GTGGTCC-TTCGAGACATATAT
*
971933 GTGGTCTTTC-AGGACATATAT
1 GTGGTCCTTCGA-GACATATAT
*
971954 GTGGTCATTCGAGACA
1 GTGGTCCTTCGAGACA
971970 AATTTTATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
20 4 0.08
21 42 0.84
22 4 0.08
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (21 bp):
GTGGTCCTTCGAGACATATAT
Found at i:975176 original size:20 final size:20
Alignment explanation
Indices: 975135--975181 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
975125 TATGCAAGTA
* *
975135 GTATCGATACTGATGTGGAG
1 GTATCGATACCGATGAGGAG
975155 GTATCGATACCGA-GAGGAAG
1 GTATCGATACCGATGAGG-AG
975175 GTATCGA
1 GTATCGA
975182 CATTGTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.30, C:0.13, G:0.34, T:0.23
Consensus pattern (20 bp):
GTATCGATACCGATGAGGAG
Found at i:978206 original size:87 final size:87
Alignment explanation
Indices: 978095--978268 Score: 339
Period size: 87 Copynumber: 2.0 Consensus size: 87
978085 TTCTTAGGTT
978095 ACTTAAATTAACAATTAACCACTGAACTTGAAATTATTTCTCGTTAATCTTCTAGTTCCTTACAC
1 ACTTAAATTAACAATTAACCACTGAACTTGAAATTATTTCTCGTTAATCTTCTAGTTCCTTACAC
978160 AAGTCCATCAAGCCTTATTCAA
66 AAGTCCATCAAGCCTTATTCAA
*
978182 ACTTAAATTACCAATTAACCACTGAACTTGAAATTATTTCTCGTTAATCTTCTAGTTCCTTACAC
1 ACTTAAATTAACAATTAACCACTGAACTTGAAATTATTTCTCGTTAATCTTCTAGTTCCTTACAC
978247 AAGTCCATCAAGCCTTATTCAA
66 AAGTCCATCAAGCCTTATTCAA
978269 TTTACCGCCT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.36
Consensus pattern (87 bp):
ACTTAAATTAACAATTAACCACTGAACTTGAAATTATTTCTCGTTAATCTTCTAGTTCCTTACAC
AAGTCCATCAAGCCTTATTCAA
Found at i:981650 original size:41 final size:41
Alignment explanation
Indices: 981604--981686 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
981594 ACTTCTATTA
981604 CAGTCATAAGAATACTAGTCTGATAGTTGTTATTATAAAGC
1 CAGTCATAAGAATACTAGTCTGATAGTTGTTATTATAAAGC
** * *
981645 CAGTCATCGGAATACTAGTCTGATTGTTGTTATTGTAAAGC
1 CAGTCATAAGAATACTAGTCTGATAGTTGTTATTATAAAGC
981686 C
1 C
981687 TTGAGCCTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.35
Consensus pattern (41 bp):
CAGTCATAAGAATACTAGTCTGATAGTTGTTATTATAAAGC
Found at i:988030 original size:23 final size:23
Alignment explanation
Indices: 988000--988060 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
987990 GATAATTTAA
988000 AAATAATATTATTTTAAATAAAT
1 AAATAATATTATTTTAAATAAAT
*
988023 AAATAATATGATTTT-AATAAAT
1 AAATAATATTATTTTAAATAAAT
988045 AAATAA-A-TATTTTAAA
1 AAATAATATTATTTTAAA
988061 ATATTTTCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.14
21 3 0.09
22 13 0.37
23 14 0.40
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (23 bp):
AAATAATATTATTTTAAATAAAT
Found at i:988063 original size:22 final size:22
Alignment explanation
Indices: 988000--988060 Score: 90
Period size: 22 Copynumber: 2.8 Consensus size: 22
987990 GATAATTTAA
988000 AAATAATATTATTTTAAATAAAT
1 AAATAATA-TATTTTAAATAAAT
988023 AAATAATATGATTTT-AATAAAT
1 AAATAATAT-ATTTTAAATAAAT
988045 AAATAA-ATATTTTAAA
1 AAATAATATATTTTAAA
988061 ATATTTTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.14
21 4 0.11
22 14 0.39
23 13 0.36
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
AAATAATATATTTTAAATAAAT
Found at i:990511 original size:15 final size:14
Alignment explanation
Indices: 990480--990507 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
990470 ATAATAAATT
990480 TTAAATTTTTTAAA
1 TTAAATTTTTTAAA
990494 TTAAATTTTTTAAA
1 TTAAATTTTTTAAA
990508 ATTAGCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTAAATTTTTTAAA
Found at i:994919 original size:24 final size:24
Alignment explanation
Indices: 994873--994919 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
994863 AAAGAATCCC
**
994873 AAAAAATAAATTTAAAATTTTACT
1 AAAAAATAAATTTAAAAACTTACT
994897 AAAAAAT-AATGTTAAAAACTTAC
1 AAAAAATAAAT-TTAAAAACTTAC
994920 CTTGCAGCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (24 bp):
AAAAAATAAATTTAAAAACTTACT
Found at i:996078 original size:12 final size:13
Alignment explanation
Indices: 996061--996115 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 13
996051 TTTCAAATTT
*
996061 TATTAATATAATA
1 TATTAATAAAATA
*
996074 T-TTAAGAAAATA
1 TATTAATAAAATA
*
996086 TATTAATTTAAATA
1 TATTAA-TAAAATA
*
996100 TATTTATAAAA-A
1 TATTAATAAAATA
996112 TATT
1 TATT
996116 TATTTATTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
12 15 0.44
13 9 0.26
14 10 0.29
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
TATTAATAAAATA
Found at i:996231 original size:21 final size:22
Alignment explanation
Indices: 996207--996251 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
996197 AAACATTTTC
996207 TTAAGATAATAA-AAATTTATT
1 TTAAGATAATAAGAAATTTATT
* * *
996228 TTAATATAGTAAGATATTTATT
1 TTAAGATAATAAGAAATTTATT
996250 TT
1 TT
996252 TAAAAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (22 bp):
TTAAGATAATAAGAAATTTATT
Found at i:996559 original size:16 final size:16
Alignment explanation
Indices: 996538--996570 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
996528 AGTAACAAAT
996538 TAATA-TTATAAATAAA
1 TAATATTTA-AAATAAA
996554 TAATATTTAAAATAAA
1 TAATATTTAAAATAAA
996570 T
1 T
996571 TTAAAAGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATATTTAAAATAAA
Found at i:997879 original size:3 final size:3
Alignment explanation
Indices: 997873--997929 Score: 80
Period size: 3 Copynumber: 19.0 Consensus size: 3
997863 ATTATTTTTT
* *
997873 TAA TAA TAA TAA T-A TATA TAA TAA TAA TAA TTA TAA TAA TAA TTA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
997918 TAA TAA TAA TAA
1 TAA TAA TAA TAA
997930 AATGGGTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
2 2 0.04
3 43 0.90
4 3 0.06
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:998205 original size:122 final size:119
Alignment explanation
Indices: 998076--998347 Score: 334
Period size: 124 Copynumber: 2.3 Consensus size: 119
998066 TCTTCTCTTT
* * *
998076 CTTCAGATGAGTTCTTCTCATTATGAACTTTTCACTGG-GGATGATGTTGACCTAT-TTCTTTCT
1 CTTCAGATGAGTTCTTCTCATTATGAACTTTTCACTGGAGGATGATGCTAACCTATCTGC-TTCT
* *
998139 GTGATAGAGTCATTCAAAAGATTGAATAAGCTCTTCTCATTATGAATTTCTTCTTTCTC
65 GTGATAGAATCATGCAAAAGATTGAATAAGCTCTTCTCATTATGAA---CTT-TTTCTC
* * * *
998198 CTTCAGATGAGTTCTTCTCATTATGAAC-TTTCTCTGGAAAGGTTGGTGCTAATCTATCTGCTTC
1 CTTCAGATGAGTTCTTCTCATTATGAACTTTTCACTGG--AGGATGATGCTAACCTATCTGCTTC
* * * * *
998262 TGTGATAGAATTATGCAAAAGGTTGAATAAGCTCTTCTTATTGTGAACTTTTTCTT
64 TGTGATAGAATCATGCAAAAGATTGAATAAGCTCTTCTCATTATGAACTTTTTCTC
998318 CTTCAGATGAGTTCTTCTCATTATGAACTT
1 CTTCAGATGAGTTCTTCTCATTATGAACTT
998348 CTTCTTCTTC
Statistics
Matches: 131, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
120 33 0.25
121 12 0.09
122 28 0.21
124 56 0.43
125 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42
Consensus pattern (119 bp):
CTTCAGATGAGTTCTTCTCATTATGAACTTTTCACTGGAGGATGATGCTAACCTATCTGCTTCTG
TGATAGAATCATGCAAAAGATTGAATAAGCTCTTCTCATTATGAACTTTTTCTC
Found at i:998334 original size:36 final size:36
Alignment explanation
Indices: 998294--998385 Score: 148
Period size: 36 Copynumber: 2.6 Consensus size: 36
998284 TTGAATAAGC
* * *
998294 TCTTCTTATTGTGAACTTTTTCTTCTTCAGATGAGT
1 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
998330 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
1 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
*
998366 TATTCTCATTATGAACTTCT
1 TCTTCTCATTATGAACTTCT
998386 CTGGAAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.50
Consensus pattern (36 bp):
TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
Found at i:998363 original size:20 final size:20
Alignment explanation
Indices: 998305--998363 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 20
998295 CTTCTTATTG
*
998305 TGAACTTTTTCTTCTTCAGA
1 TGAACTTCTTCTTCTTCAGA
*
998325 TG-AGTTCTTC-TCATT---A
1 TGAACTTCTTCTTC-TTCAGA
998341 TGAACTTCTTCTTCTTCAGA
1 TGAACTTCTTCTTCTTCAGA
998361 TGA
1 TGA
998364 GTTATTCTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 12
0.67 0.07 0.27
Matches are distributed among these distances:
16 3 0.10
17 9 0.30
18 4 0.13
19 8 0.27
20 6 0.20
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.47
Consensus pattern (20 bp):
TGAACTTCTTCTTCTTCAGA
Found at i:998523 original size:113 final size:113
Alignment explanation
Indices: 998329--998916 Score: 715
Period size: 113 Copynumber: 5.2 Consensus size: 113
998319 TTCAGATGAG
* *
998329 TTCTTCTCATTATGAA---CTTCTT-CTTCTTCAGATGAGTTATTCTCATTATGAACTTC--TCT
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TCGAACT
*** * *
998388 GGAAAAAACTGATCCATCAAGTGATGGATTTGAGCAAAAAGTTGAACAAA
65 GG-AAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAAGTTGAACAAA
*
998438 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTTTGAACTCGAACTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTG
* * * *
998503 GAAAAGTTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAA
66 GAAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAAGTTGAACAAA
* * ** *
998551 TTCTTCTCATTATGAATTTCTTCTTCCTTTTTCAGATGATGAGTTCTTCTCATTATGAACTTTAC
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTCTCATTATGAACTCGAA
* * * * * *
998616 CTGGCAATGTTAATCCATCAAATAATGAATTTAAACAAAAGGTTGAACAAA
63 CTGGAAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAAGTTGAACAAA
*
998667 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTCGAACTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTG
* * * * *
998732 GTAATGCTGATCCATTGAA-TGATGAATTCAAGCAAAAAGTTGAACAAG
66 GAAATGTTGATCCA-TCAAGTGATGAATTTAAGCAAAAAGTTGAACAAA
* * *
998780 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGGTGAGTTCTTCTCATTATGAACTCTAACTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTG
* * * * *
998845 GTACTGTTGTTCCA-CTGAGTGATGAATTTAAGCAAAAAGTTGAACAAG
66 GAAATGTTGATCCATC-AAGTGATGAATTTAAGCAAAAAGTTGAACAAA
*
998893 TTCTTCTCATTATGAACTTTTTCT
1 TTCTTCTCATTATGAACTTCTTCT
998917 GGAAAAGTTG
Statistics
Matches: 421, Mismatches: 46, Indels: 20
0.86 0.09 0.04
Matches are distributed among these distances:
109 16 0.04
112 9 0.02
113 289 0.69
114 8 0.02
115 1 0.00
116 98 0.23
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (113 bp):
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTG
GAAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAAGTTGAACAAA
Found at i:998610 original size:229 final size:227
Alignment explanation
Indices: 998329--998916 Score: 734
Period size: 229 Copynumber: 2.6 Consensus size: 227
998319 TTCAGATGAG
* *
998329 TTCTTCTCATTATGAA--CTTCTT-CTTCTTC--AGATGAGTTATTCTCATTATGAACTTCT-CT
1 TTCTTCTCATTATGAATTCTTCTTCCTTTTTCAGAGATGAGTTCTTCTCATTATGAACTTCTACT
*** * *
998388 GGAAAAAACTGATCCATCAAGTGATGGATTTGAGCAAAAAGTTGAACAAATTCTTCTCATTATGA
66 GG-AAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTCATTATGA
* *
998453 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTTTGAACTCGAACTGGAAAAGTTGATCCA-
130 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTGATCCAT
* ** *
998517 TCAAGTGATGGATTTGAGCAAAAGGTTGAACAAA
195 TCAA-TGATGAATTCAAGCAAAAAGTTGAACAAA
998551 TTCTTCTCATTATGAATTTCTTCTTCCTTTTTCAGATGATGAGTTCTTCTCATTATGAACTT-TA
1 TTCTTCTCATTATGAA-TTCTTCTTCCTTTTTCAGA-GATGAGTTCTTCTCATTATGAACTTCTA
* * * * * *
998615 CCTGGCAATGTTAATCCATCAAATAATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTAT
64 -CTGGAAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTCATTAT
* * *
998680 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTCGAACTGGTAATGCTGATCC
128 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTGATCC
* *
998745 ATTGAATGATGAATTCAAGCAAAAAGTTGAACAAG
193 ATTCAATGATGAATTCAAGCAAAAAGTTGAACAAA
998780 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTT-AG-G-TGAGTTCTTCTCATTATGAAC-TCTA
1 TTCTTCTCATTATGAA-TTCTTCTTCCTT-TTTCAGAGATGAGTTCTTCTCATTATGAACTTCT-
* * * * *
998841 ACTGGTACTGTTGTTCCA-CTGAGTGATGAATTTAAGCAAAAAGTTGAACAAGTTCTTCTCATTA
63 ACTGGAAATGTTGATCCATC-AAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTCATTA
*
998905 TGAACTTTTTCT
127 TGAACTTCTTCT
998917 GGAAAAGTTG
Statistics
Matches: 316, Mismatches: 36, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
222 16 0.05
225 8 0.03
226 90 0.28
227 2 0.01
228 2 0.01
229 188 0.59
230 10 0.03
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (227 bp):
TTCTTCTCATTATGAATTCTTCTTCCTTTTTCAGAGATGAGTTCTTCTCATTATGAACTTCTACT
GGAAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAA
CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTGATCCATT
CAATGATGAATTCAAGCAAAAAGTTGAACAAA
Found at i:998905 original size:73 final size:73
Alignment explanation
Indices: 998818--999020 Score: 228
Period size: 73 Copynumber: 2.8 Consensus size: 73
998808 TCTTTAGGTG
* ** * * *
998818 AGTTCTTCTCATTATGAACTCTAACTGGTACTGTTGTTCCA-CTGAGTGATGAATTTAAGCAAAA
1 AGTTCTTCTCATTATGAACTCTAACTGGAAAAGTTGATCCATC-AAATGATGAATTTAAGCAAAA
998882 AGTTGAACA
65 AGTTGAACA
* ** * * *
998891 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGTTGATCCATCAAATGATGGATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTCTAACTGGAAAAGTTGATCCATCAAATGATGAATTTAAGCAAAAA
998956 GTTGAACA
66 GTTGAACA
* * * **
998964 AATTCCTCTCATTATGAACTTTTTTCTGGAAAAGTTGATCCATCAAATGATGAATTT
1 AGTTCTTCTCATTATGAAC-TCTAACTGGAAAAGTTGATCCATCAAATGATGAATTT
999021 GAATCTTTGC
Statistics
Matches: 113, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
73 76 0.67
74 37 0.33
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (73 bp):
AGTTCTTCTCATTATGAACTCTAACTGGAAAAGTTGATCCATCAAATGATGAATTTAAGCAAAAA
GTTGAACA
Found at i:999021 original size:74 final size:73
Alignment explanation
Indices: 998864--999022 Score: 264
Period size: 73 Copynumber: 2.2 Consensus size: 73
998854 TTCCACTGAG
* * *
998864 TGATGAATTTAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGTTGAT
1 TGATGAATTTGAGCAAAAAGTTGAACAAATTCCTCTCATTATGAACTTTTTCTGGAAAAGTTGAT
998929 CCATCAAA
66 CCATCAAA
* *
998937 TGATGGATTTGAGCAAAAGGTTGAACAAATTCCTCTCATTATGAACTTTTTTCTGGAAAAGTTGA
1 TGATGAATTTGAGCAAAAAGTTGAACAAATTCCTCTCATTATGAAC-TTTTTCTGGAAAAGTTGA
999002 TCCATCAAA
65 TCCATCAAA
999011 TGATGAATTTGA
1 TGATGAATTTGA
999023 ATCTTTGCTA
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
73 41 0.52
74 38 0.48
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (73 bp):
TGATGAATTTGAGCAAAAAGTTGAACAAATTCCTCTCATTATGAACTTTTTCTGGAAAAGTTGAT
CCATCAAA
Found at i:999988 original size:93 final size:93
Alignment explanation
Indices: 999828--1000025 Score: 333
Period size: 93 Copynumber: 2.1 Consensus size: 93
999818 CTTATTTCTA
* *
999828 CTATGAGCACATTCATCTTTCAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAG
1 CTATGAGCACATTCATATTTCAAATCCAATGATTGGTTTTCGGGGTTCATACCAAACCAGATCAG
*
999893 ATAACTCAAAGAACACTTCCATAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
* * *
999921 TTATGAGCACATTCATATTTCAAATCTAATGATTGGTTTTCGGGGTTCATATCAAACCAGATCAG
1 CTATGAGCACATTCATATTTCAAATCCAATGATTGGTTTTCGGGGTTCATACCAAACCAGATCAG
*
999986 ATAACTCAAAGAACATTTCCAGAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
1000014 CTATGAGCACAT
1 CTATGAGCACAT
1000026 GGCACTTGTT
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 97 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (93 bp):
CTATGAGCACATTCATATTTCAAATCCAATGATTGGTTTTCGGGGTTCATACCAAACCAGATCAG
ATAACTCAAAGAACACTTCCAGAAGATG
Found at i:1012653 original size:16 final size:16
Alignment explanation
Indices: 1012632--1012664 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1012622 AGTAACAAAT
1012632 TAATA-TTATAAATAAA
1 TAATATTTA-AAATAAA
1012648 TAATATTTAAAATAAA
1 TAATATTTAAAATAAA
1012664 T
1 T
1012665 TAAAAGCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATATTTAAAATAAA
Found at i:1013679 original size:3 final size:3
Alignment explanation
Indices: 1013668--1013721 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
1013658 ATTATTTTTT
* * * *
1013668 TAA TTA TAA TAA TTA TAA TAA TAA TAA TTA TAA TAA TAA TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1013716 TAA TAA
1 TAA TAA
1013722 AATGGGTAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:1013688 original size:12 final size:12
Alignment explanation
Indices: 1013668--1013719 Score: 86
Period size: 12 Copynumber: 4.3 Consensus size: 12
1013658 ATTATTTTTT
1013668 TAATTATAATAA
1 TAATTATAATAA
* *
1013680 TTATAATAATAA
1 TAATTATAATAA
1013692 TAATTATAATAA
1 TAATTATAATAA
1013704 TAATTATAATAA
1 TAATTATAATAA
1013716 TAAT
1 TAAT
1013720 AAAATGGGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATTATAATAA
Found at i:1013691 original size:15 final size:15
Alignment explanation
Indices: 1013668--1013721 Score: 81
Period size: 15 Copynumber: 3.6 Consensus size: 15
1013658 ATTATTTTTT
*
1013668 TAATTATAATAATTA
1 TAATAATAATAATTA
1013683 TAATAATAATAATTA
1 TAATAATAATAATTA
* *
1013698 TAATAATAATTATAA
1 TAATAATAATAATTA
1013713 TAATAATAA
1 TAATAATAA
1013722 AATGGGTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:1015277 original size:179 final size:179
Alignment explanation
Indices: 1014977--1015334 Score: 716
Period size: 179 Copynumber: 2.0 Consensus size: 179
1014967 TGATTTTTTT
1014977 TTTGATGAATTCAATGTTTAATCTAATTCGAAATGGTGAACTCTTGATTGATTTTGATTGTGAGC
1 TTTGATGAATTCAATGTTTAATCTAATTCGAAATGGTGAACTCTTGATTGATTTTGATTGTGAGC
1015042 AGAGACTCATGGAATGATCCAAAGAGAGTGGAAGGGTTGGATCATGTGAATATTTGTGCTGCTTT
66 AGAGACTCATGGAATGATCCAAAGAGAGTGGAAGGGTTGGATCATGTGAATATTTGTGCTGCTTT
1015107 TGCTTCAGGTGTTGTTTCTGCTGCCATTGGCAGTGATGGTTCAGTGTGG
131 TGCTTCAGGTGTTGTTTCTGCTGCCATTGGCAGTGATGGTTCAGTGTGG
1015156 TTTGATGAATTCAATGTTTAATCTAATTCGAAATGGTGAACTCTTGATTGATTTTGATTGTGAGC
1 TTTGATGAATTCAATGTTTAATCTAATTCGAAATGGTGAACTCTTGATTGATTTTGATTGTGAGC
1015221 AGAGACTCATGGAATGATCCAAAGAGAGTGGAAGGGTTGGATCATGTGAATATTTGTGCTGCTTT
66 AGAGACTCATGGAATGATCCAAAGAGAGTGGAAGGGTTGGATCATGTGAATATTTGTGCTGCTTT
1015286 TGCTTCAGGTGTTGTTTCTGCTGCCATTGGCAGTGATGGTTCAGTGTGG
131 TGCTTCAGGTGTTGTTTCTGCTGCCATTGGCAGTGATGGTTCAGTGTGG
1015335 GTATGGGGAA
Statistics
Matches: 179, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
179 179 1.00
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.37
Consensus pattern (179 bp):
TTTGATGAATTCAATGTTTAATCTAATTCGAAATGGTGAACTCTTGATTGATTTTGATTGTGAGC
AGAGACTCATGGAATGATCCAAAGAGAGTGGAAGGGTTGGATCATGTGAATATTTGTGCTGCTTT
TGCTTCAGGTGTTGTTTCTGCTGCCATTGGCAGTGATGGTTCAGTGTGG
Found at i:1017923 original size:29 final size:29
Alignment explanation
Indices: 1017879--1017938 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
1017869 GTGTTGCTGT
*
1017879 AGGTCGCCATGCCATCCAGGCGACCTTGG
1 AGGTCGCCATGCCATCCAGGAGACCTTGG
* * *
1017908 AGGTCGCCATGGCATCCGGGAGAGCTTGG
1 AGGTCGCCATGCCATCCAGGAGACCTTGG
1017937 AG
1 AG
1017939 TCTCTGCATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.18, C:0.28, G:0.37, T:0.17
Consensus pattern (29 bp):
AGGTCGCCATGCCATCCAGGAGACCTTGG
Found at i:1018165 original size:12 final size:11
Alignment explanation
Indices: 1018145--1018180 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
1018135 GAATTCAACT
1018145 GCATTATTGCA
1 GCATTATTGCA
*
1018156 GCACTTATTGCT
1 GCA-TTATTGCA
1018168 GCATTATTGCA
1 GCATTATTGCA
1018179 GC
1 GC
1018181 CTGTGAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (11 bp):
GCATTATTGCA
Found at i:1018394 original size:16 final size:16
Alignment explanation
Indices: 1018373--1018409 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
1018363 GGTAAGTTTT
1018373 TTATTATTTT-AATTA
1 TTATTATTTTAAATTA
1018388 GTTATTATTTTAAATTA
1 -TTATTATTTTAAATTA
1018405 TTATT
1 TTATT
1018410 TTGTTAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
TTATTATTTTAAATTA
Found at i:1018547 original size:27 final size:28
Alignment explanation
Indices: 1018488--1018552 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
1018478 TATATTAAAA
1018488 AAATAATTAATTAGTGTGTTAGTTAGTT
1 AAATAATTAATTAGTGTGTTAGTTAGTT
* *
1018516 TAATATTTAATTAGT-T-TATAGTTAGTT
1 AAATAATTAATTAGTGTGT-TAGTTAGTT
*
1018543 AAATAGTTAA
1 AAATAATTAA
1018553 GTTATATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.03
27 18 0.56
28 13 0.41
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (28 bp):
AAATAATTAATTAGTGTGTTAGTTAGTT
Found at i:1019002 original size:25 final size:26
Alignment explanation
Indices: 1018950--1019005 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
1018940 ATTAGTTAAT
* *
1018950 TAGTTTTTTAGTTTAAGTTATAAGAA
1 TAGTTTATTAGTTAAAGTTATAAGAA
*
1018976 TAGTTTATTAGTTAAAGTTAT-ATAA
1 TAGTTTATTAGTTAAAGTTATAAGAA
1019001 TAGTT
1 TAGTT
1019006 AAAGTTATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (26 bp):
TAGTTTATTAGTTAAAGTTATAAGAA
Found at i:1021483 original size:21 final size:20
Alignment explanation
Indices: 1021459--1021541 Score: 57
Period size: 21 Copynumber: 4.2 Consensus size: 20
1021449 ACTAGTAATC
1021459 ATTAGTATCAAATAATTAAAT
1 ATTAGTAT-AAATAATTAAAT
* * *
1021480 ATTA--AT-AATAAATCATT
1 ATTAGTATAAATAATTAAAT
* *
1021497 ATTAATAATAAAT-ACTAAAT
1 ATTAGT-ATAAATAATTAAAT
1021517 CATTAGTATTAAATAATTAAAT
1 -ATTAGTA-TAAATAATTAAAT
1021539 ATT
1 ATT
1021542 TAAAAATCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
17 12 0.26
19 2 0.04
20 7 0.15
21 20 0.43
22 6 0.13
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (20 bp):
ATTAGTATAAATAATTAAAT
Found at i:1021486 original size:14 final size:14
Alignment explanation
Indices: 1021469--1021541 Score: 51
Period size: 14 Copynumber: 5.0 Consensus size: 14
1021459 ATTAGTATCA
1021469 AATAATTAAATATT
1 AATAATTAAATATT
1021483 AATAA-TAAATCATT
1 AATAATTAAAT-ATT
* *
1021497 ATTAATAATAAATACTA
1 AATAAT--TAAATA-TT
* *
1021514 AATCATT-AGTATT
1 AATAATTAAATATT
1021527 AAATAATTAAATATT
1 -AATAATTAAATATT
1021542 TAAAAATCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 13
0.68 0.12 0.20
Matches are distributed among these distances:
13 6 0.14
14 21 0.48
15 6 0.14
16 1 0.02
17 10 0.23
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (14 bp):
AATAATTAAATATT
Found at i:1021489 original size:17 final size:17
Alignment explanation
Indices: 1021469--1021510 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
1021459 ATTAGTATCA
*
1021469 AATAATTAAATATTAAT
1 AATAAATAAATATTAAT
* *
1021486 AATAAATCATTATTAAT
1 AATAAATAAATATTAAT
1021503 AATAAATA
1 AATAAATA
1021511 CTAAATCATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (17 bp):
AATAAATAAATATTAAT
Found at i:1021629 original size:13 final size:13
Alignment explanation
Indices: 1021611--1021791 Score: 62
Period size: 12 Copynumber: 14.5 Consensus size: 13
1021601 ACACTCATTT
* *
1021611 ATTATTATTCATA
1 ATTATTAGTAATA
1021624 ATTATTAGTAATA
1 ATTATTAGTAATA
*
1021637 ATTATTA--AATT
1 ATTATTAGTAATA
1021648 ATTATTA-TAA-A
1 ATTATTAGTAATA
* * *
1021659 ATCATTACTAAATC
1 ATTATTAGT-AATA
*
1021673 ATTATTA--AATC
1 ATTATTAGTAATA
* * *
1021684 GTTAGTATTAAATA
1 ATTATTAGT-AATA
*
1021698 ATTATTA-TAATG
1 ATTATTAGTAATA
* *
1021710 ATTATTATTAAATC
1 ATTATTAGT-AATA
* *
1021724 ATTATTA-TCATT
1 ATTATTAGTAATA
*
1021736 ATTATTA--AATC
1 ATTATTAGTAATA
*
1021747 ATTATTA-TAATG
1 ATTATTAGTAATA
* *
1021759 ATTATTACTAAATC
1 ATTATTAGT-AATA
*
1021773 ATTATTA-TAATG
1 ATTATTAGTAATA
1021785 ATTATTA
1 ATTATTA
1021792 TCAAATCATT
Statistics
Matches: 135, Mismatches: 21, Indels: 25
0.75 0.12 0.14
Matches are distributed among these distances:
11 34 0.25
12 42 0.31
13 25 0.19
14 34 0.25
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (13 bp):
ATTATTAGTAATA
Found at i:1021660 original size:14 final size:14
Alignment explanation
Indices: 1021637--1021977 Score: 100
Period size: 14 Copynumber: 25.5 Consensus size: 14
1021627 ATTAGTAATA
* *
1021637 ATTATTAAATTATT
1 ATTATAAAATCATT
1021651 ATTATAAAATCATT
1 ATTATAAAATCATT
*
1021665 A--CT-AAATCATT
1 ATTATAAAATCATT
*
1021676 A-T-T-AAATCGTT
1 ATTATAAAATCATT
* * *
1021687 AGTATTAAATAATT
1 ATTATAAAATCATT
*
1021701 ATTAT--AATGATT
1 ATTATAAAATCATT
*
1021713 ATTATTAAATCATT
1 ATTATAAAATCATT
1021727 A-T-T---ATCATT
1 ATTATAAAATCATT
*
1021736 ATTATTAAATCATT
1 ATTATAAAATCATT
*
1021750 ATTAT--AATGATT
1 ATTATAAAATCATT
1021762 ATTACT-AAATCATT
1 ATTA-TAAAATCATT
*
1021776 ATTAT--AATGATT
1 ATTATAAAATCATT
*
1021788 ATTATCAAATCATTACT
1 ATTATAAAATCA-T--T
*
1021805 AAATTATCAAATCATT
1 --ATTATAAAATCATT
*
1021821 AAATATTAAAATCATT
1 -ATTA-TAAAATCATT
*
1021837 A-T-T-AAATTATT
1 ATTATAAAATCATT
*
1021848 ATTAT--AATGATT
1 ATTATAAAATCATT
1021860 ATTACT-AAATCATT
1 ATTA-TAAAATCATT
*
1021874 ATTAT--AATGATT
1 ATTATAAAATCATT
*
1021886 ATTATCAAATCATT
1 ATTATAAAATCATT
*
1021900 ACTAAATCATCAAATCATT
1 A-T---T-ATAAAATCATT
*
1021919 AAATATTAAAATCATT
1 -ATTA-TAAAATCATT
1021935 A-T-T-AAAT-ATT
1 ATTATAAAATCATT
*
1021945 ATTAT--AATGATT
1 ATTATAAAATCATT
1021957 ATTACT-AAATCATT
1 ATTA-TAAAATCATT
1021971 ATTATAA
1 ATTATAA
1021978 CTTCATACTA
Statistics
Matches: 264, Mismatches: 23, Indels: 80
0.72 0.06 0.22
Matches are distributed among these distances:
9 7 0.03
10 5 0.02
11 35 0.13
12 67 0.25
13 9 0.03
14 85 0.32
15 9 0.03
16 20 0.08
17 1 0.00
18 2 0.01
19 23 0.09
20 1 0.00
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (14 bp):
ATTATAAAATCATT
Found at i:1021721 original size:26 final size:26
Alignment explanation
Indices: 1021637--1022410 Score: 353
Period size: 26 Copynumber: 30.8 Consensus size: 26
1021627 ATTAGTAATA
* * *
1021637 ATTATTAAATTATTATTATAA-AATC
1 ATTATTAAATCATTATTATAATGATT
*
1021662 ATTACTAAATCATTATTA-AATCG-TT
1 ATTATTAAATCATTATTATAAT-GATT
* *
1021687 AGTATTAAATAATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
*
1021713 ATTATTAAATCATTA-T-T-ATCATT
1 ATTATTAAATCATTATTATAATGATT
1021736 ATTATTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
*
1021762 ATTACTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
* *
1021788 ATTATCAAATCATTA--CT-A--A--
1 ATTATTAAATCATTATTATAATGATT
* * * *
1021807 ATTATCAAATCATTAAATATTAA-AATC
1 ATTATTAAATCATT-ATTA-TAATGATT
*
1021834 ATTATTAAATTATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
*
1021860 ATTACTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
* * * *
1021886 ATTATCAAATCATTACTA-AATCATCAA
1 ATTATTAAATCATTATTATAATGAT--T
* *
1021913 ATCATT-AA--A-TATTA-AA--ATC
1 ATTATTAAATCATTATTATAATGATT
1021932 ATTATTAAAT-ATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
* *
1021957 ATTACTAAATCATTATTATAACTTCA-T
1 ATTATTAAATCATTATTATAA--TGATT
* * * *
1021984 ACTAGT-AATCATTAGTATCAAATAATT
1 ATTATTAAATCATTATTAT--AATGATT
* * * * *
1022011 AAATATT-AATAATAAATCATTATG-TT
1 -ATTATTAAATCAT-TATTATAATGATT
* *
1022037 ATTATTAAAT--TTA--A-ATTCGACT
1 ATTATTAAATCATTATTATAAT-GATT
* *
1022059 ATGTA-TAAAT--TTA--A-ATTCGTTT
1 AT-TATTAAATCATTATTATAAT-GATT
* * * * * *
1022081 AGTCATTGTACACTCATTTTTTATTATTTCATA
1 A-TTA-T-TA-AATCA-TTATTA-TA-ATGATT
* *
1022114 ATTATTAATAATAATTATTA-AATCATT
1 ATTATT-A-AATCATTATTATAATGATT
* * *
1022141 ACTATTAAATCATTATTATAA-AATC
1 ATTATTAAATCATTATTATAATGATT
*
1022166 ATTATTAAATCATTCGTATTA-AATCATT
1 ATTATTAAATCA-T--TATTATAATGATT
* *
1022194 ATTATAAAATCATTATTA-AATCATT
1 ATTATTAAATCATTATTATAATGATT
*
1022219 AGTATTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
*
1022245 ATTATTAAATCATTA-T-T-ATCATT
1 ATTATTAAATCATTATTATAATGATT
1022268 ATTATTAAATCATTA-T-TAATGATT
1 ATTATTAAATCATTATTATAATGATT
*
1022292 ATTACTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
* * * *
1022318 ATTATCAAATCATTACTA-AATCATCAA
1 ATTATTAAATCATTATTATAATGAT--T
* *
1022345 ATCATT-AA--A-TATTA-AA--ATC
1 ATTATTAAATCATTATTATAATGATT
1022364 ATTATTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
* *
1022390 ATTACTAAATCATTTTTATAA
1 ATTATTAAATCATTATTATAA
1022411 CTTCATTACT
Statistics
Matches: 585, Mismatches: 96, Indels: 135
0.72 0.12 0.17
Matches are distributed among these distances:
19 24 0.04
20 6 0.01
21 8 0.01
22 26 0.04
23 67 0.11
24 31 0.05
25 120 0.21
26 207 0.35
27 40 0.07
28 32 0.05
29 5 0.01
30 6 0.01
31 6 0.01
32 2 0.00
33 3 0.01
34 2 0.00
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.45
Consensus pattern (26 bp):
ATTATTAAATCATTATTATAATGATT
Found at i:1021812 original size:19 final size:18
Alignment explanation
Indices: 1021788--1021846 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 18
1021778 TATAATGATT
1021788 ATTATCAAATCATTACTAA
1 ATTATCAAATCATTA-TAA
1021807 ATTATCAAATCATTA-AA
1 ATTATCAAATCATTATAA
1021824 TATTA--AAATCATTATTAA
1 -ATTATCAAATCATTA-TAA
1021842 ATTAT
1 ATTAT
1021847 TATTATAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
16 9 0.25
17 6 0.17
18 6 0.17
19 15 0.42
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTATCAAATCATTATAA
Found at i:1021843 original size:98 final size:98
Alignment explanation
Indices: 1021637--1021977 Score: 469
Period size: 98 Copynumber: 3.5 Consensus size: 98
1021627 ATTAGTAATA
* * * * *
1021637 ATTATTAAATTATTATTATAA-AATCATTACTAAATCATTATTA-AATCG-TTAGTATTAAATAA
1 ATTATTAAATTATTATTATAATGATTATTACTAAATCATTATTATAAT-GATTATTATCAAATCA
* * * * * *
1021699 TTATTATAATGAT--TATTATTAAATCATTATTATCATT
65 TTACTA-AATCATCAAATCATTAAAT-ATTA--A-AATC
*
1021736 ATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1 ATTATTAAATTATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
*
1021801 TACTAAATTATCAAATCATTAAATATTAAAATC
66 TACTAAATCATCAAATCATTAAATATTAAAATC
1021834 ATTATTAAATTATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1 ATTATTAAATTATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1021899 TACTAAATCATCAAATCATTAAATATTAAAATC
66 TACTAAATCATCAAATCATTAAATATTAAAATC
1021932 ATTATTAAA-TATTATTATAATGATTATTACTAAATCATTATTATAA
1 ATTATTAAATTATTATTATAATGATTATTACTAAATCATTATTATAA
1021978 CTTCATACTA
Statistics
Matches: 223, Mismatches: 14, Indels: 12
0.90 0.06 0.05
Matches are distributed among these distances:
97 37 0.17
98 107 0.48
99 21 0.09
100 26 0.12
101 23 0.10
102 9 0.04
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (98 bp):
ATTATTAAATTATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
TACTAAATCATCAAATCATTAAATATTAAAATC
Found at i:1022148 original size:14 final size:14
Alignment explanation
Indices: 1022109--1022408 Score: 198
Period size: 14 Copynumber: 22.7 Consensus size: 14
1022099 TTTTATTATT
*
1022109 TCATAATTATT-AA
1 TCATTATTATTAAA
* *
1022122 TAATAATTATTAAA
1 TCATTATTATTAAA
*
1022136 TCATTACTATTAAA
1 TCATTATTATTAAA
1022150 TCATTATTA-TAAA
1 TCATTATTATTAAA
*
1022163 --ATCATTATTAAA
1 TCATTATTATTAAA
**
1022175 TCATTCGTATTAAA
1 TCATTATTATTAAA
1022189 TCATTATTA-TAAA
1 TCATTATTATTAAA
*
1022202 --ATCATTATTAAA
1 TCATTATTATTAAA
*
1022214 TCATTAGTATTAAA
1 TCATTATTATTAAA
1022228 TCATTATTA-T-AA
1 TCATTATTATTAAA
*
1022240 TGATTATTATTAAA
1 TCATTATTATTAAA
1022254 TC---ATTATT--A
1 TCATTATTATTAAA
1022263 TCATTATTATTAAA
1 TCATTATTATTAAA
1022277 TC---ATTATT-AA
1 TCATTATTATTAAA
* *
1022287 TGATTATTACTAAA
1 TCATTATTATTAAA
1022301 TCATTATTA-T-AA
1 TCATTATTATTAAA
* *
1022313 TGATTATTATCAAA
1 TCATTATTATTAAA
*
1022327 TCATTACTAAATCATCAAA
1 TCATTA-T---T-ATTAAA
*
1022346 TCATTAAATATTAAA
1 TCATT-ATTATTAAA
*
1022361 --ATCATTATTAAA
1 TCATTATTATTAAA
1022373 TCATTATTA-T-AA
1 TCATTATTATTAAA
* *
1022385 TGATTATTACTAAA
1 TCATTATTATTAAA
*
1022399 TCATTTTTAT
1 TCATTATTAT
1022409 AACTTCATTA
Statistics
Matches: 225, Mismatches: 32, Indels: 59
0.71 0.10 0.19
Matches are distributed among these distances:
9 3 0.01
10 3 0.01
11 24 0.11
12 52 0.23
13 30 0.13
14 93 0.41
15 6 0.03
16 1 0.00
18 1 0.00
19 11 0.05
20 1 0.00
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (14 bp):
TCATTATTATTAAA
Found at i:1022157 original size:11 final size:11
Alignment explanation
Indices: 1022127--1022393 Score: 153
Period size: 11 Copynumber: 21.6 Consensus size: 11
1022117 ATTAATAATA
1022127 ATTATTAAATC
1 ATTATTAAATC
1022138 ATTACTATTAAATC
1 A-T--TATTAAATC
1022152 ATTATTATAAAATC
1 ATTA-T-T-AAATC
1022166 ATTATTAAATC
1 ATTATTAAATC
1022177 ATTCGTATTAAATC
1 A-T--TATTAAATC
1022191 ATTATTATAAAATC
1 ATTA-T-T-AAATC
1022205 ATTATTAAATC
1 ATTATTAAATC
1022216 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
1022230 ATTATTATAATGATT
1 ATTA-T-TAA--ATC
1022245 ATTATTAAATC
1 ATTATTAAATC
* *
1022256 ATTATTATCATT
1 ATTATTA-AATC
1022268 ATTATTAAATC
1 ATTATTAAATC
*
1022279 ATTATTAATGATT
1 ATTATTAA--ATC
*
1022292 ATTACTAAATC
1 ATTATTAAATC
*
1022303 ATTATTATAATG
1 ATTATTA-AATC
1022315 ATTATTATCAAATC
1 ATTA-T-T-AAATC
*
1022329 ATTACTAAATC
1 ATTATTAAATC
1022340 ATCAAATCATTAAAT-
1 AT----T-ATTAAATC
1022355 ATTA--AAATC
1 ATTATTAAATC
1022364 ATTATTAAATC
1 ATTATTAAATC
*
1022375 ATTATTATAATG
1 ATTATTA-AATC
1022387 ATTATTA
1 ATTATTA
1022394 CTAAATCATT
Statistics
Matches: 206, Mismatches: 15, Indels: 69
0.71 0.05 0.24
Matches are distributed among these distances:
8 4 0.02
9 4 0.02
10 1 0.00
11 66 0.32
12 35 0.17
13 23 0.11
14 57 0.28
15 10 0.05
16 6 0.03
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (11 bp):
ATTATTAAATC
Found at i:1022597 original size:14 final size:14
Alignment explanation
Indices: 1022576--1022715 Score: 133
Period size: 14 Copynumber: 10.9 Consensus size: 14
1022566 ATTAGTAATA
1022576 ATTATTAAATCATT
1 ATTATTAAATCATT
*
1022590 ACTATTAAATCATT
1 ATTATTAAATCATT
*
1022604 ATTA-TAAA--ATC
1 ATTATTAAATCATT
*
1022615 ATTACTAAATCATT
1 ATTATTAAATCATT
*
1022629 AGTATTAAATCATT
1 ATTATTAAATCATT
*
1022643 ATTA-T-AATGATT
1 ATTATTAAATCATT
1022655 ATTATTAAATC---
1 ATTATTAAATCATT
1022666 ATTATT--ATCATT
1 ATTATTAAATCATT
1022678 ATTATTAAATCATT
1 ATTATTAAATCATT
*
1022692 ATTA-T-AATGATT
1 ATTATTAAATCATT
*
1022704 ATTACTAAATCA
1 ATTATTAAATCA
1022716 GACAAGTCAT
Statistics
Matches: 103, Mismatches: 11, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
9 3 0.03
11 12 0.12
12 30 0.29
13 8 0.08
14 50 0.49
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.46
Consensus pattern (14 bp):
ATTATTAAATCATT
Found at i:1022655 original size:26 final size:26
Alignment explanation
Indices: 1022576--1022715 Score: 171
Period size: 26 Copynumber: 5.5 Consensus size: 26
1022566 ATTAGTAATA
1022576 ATTATTAAATCATTACTATTAAATCATT
1 ATTATTAAATCATTACTA-T-AATCATT
*
1022604 ATTATAAAATCATTACTA-AATCATT
1 ATTATTAAATCATTACTATAATCATT
* * *
1022629 AGTATTAAATCATTATTATAATGATT
1 ATTATTAAATCATTACTATAATCATT
1022655 ATTATTAAATCATTA-T-T-ATCATT
1 ATTATTAAATCATTACTATAATCATT
* *
1022678 ATTATTAAATCATTATTATAATGATT
1 ATTATTAAATCATTACTATAATCATT
*
1022704 ATTACTAAATCA
1 ATTATTAAATCA
1022716 GACAAGTCAT
Statistics
Matches: 99, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
23 20 0.20
24 2 0.02
25 24 0.24
26 36 0.36
28 17 0.17
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.46
Consensus pattern (26 bp):
ATTATTAAATCATTACTATAATCATT
Found at i:1022726 original size:49 final size:48
Alignment explanation
Indices: 1022576--1022730 Score: 177
Period size: 49 Copynumber: 3.1 Consensus size: 48
1022566 ATTAGTAATA
* *
1022576 ATTATTAAATCATTACTATTAAATCATTATTATAAAATCATTACTAAATCATT
1 ATTATTAAATCATTATTA-T-AATGATTATTAT-AAATCATTAC--AATCATT
* **
1022629 AGTATTAAATCATTATTATAATGATTATTATTAAATCATTATTATCATT
1 ATTATTAAATCATTATTATAATGATTATTA-TAAATCATTACAATCATT
*
1022678 ATTATTAAATCATTATTATAATGATTATTACTAAATCA-GACAAGTCATT
1 ATTATTAAATCATTATTATAATGATTATTA-TAAATCATTACAA-TCATT
1022727 ATTA
1 ATTA
1022731 CAAATCAAAC
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
48 2 0.02
49 51 0.57
51 19 0.21
52 2 0.02
53 16 0.18
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.45
Consensus pattern (48 bp):
ATTATTAAATCATTATTATAATGATTATTATAAATCATTACAATCATT
Found at i:1022742 original size:22 final size:23
Alignment explanation
Indices: 1022701--1022744 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
1022691 TATTATAATG
*
1022701 ATTATTACTAAATCAGACAAGTC
1 ATTATTACTAAATCAAACAAGTC
1022724 ATTATTAC-AAATCAAACAAGT
1 ATTATTACTAAATCAAACAAGT
1022745 ATTCCATGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.48, C:0.16, G:0.07, T:0.30
Consensus pattern (23 bp):
ATTATTACTAAATCAAACAAGTC
Found at i:1025634 original size:15 final size:15
Alignment explanation
Indices: 1025605--1025633 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1025595 ATATAAAATA
1025605 AACACTAATATTTTT
1 AACACTAATATTTTT
1025620 AACAC-AATATTTTT
1 AACACTAATATTTTT
1025634 TTAAACGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (15 bp):
AACACTAATATTTTT
Found at i:1026077 original size:27 final size:27
Alignment explanation
Indices: 1026047--1026107 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
1026037 TAATATAATC
*
1026047 TATATA-TTAAACTAACAAATTAAATAA
1 TATATACTTAAACTAACAAACT-AATAA
1026074 TATA-ACTTAAACTAACAAACTAATAA
1 TATATACTTAAACTAACAAACTAATAA
*
1026100 TTTATACT
1 TATATACT
1026108 AACAAACTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.34
Consensus pattern (27 bp):
TATATACTTAAACTAACAAACTAATAA
Found at i:1026099 original size:21 final size:21
Alignment explanation
Indices: 1026075--1026118 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
1026065 ATTAAATAAT
1026075 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
1026096 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
1026117 AT
1 AT
1026119 TAACAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.30
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:1026140 original size:7 final size:7
Alignment explanation
Indices: 1026128--1026153 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
1026118 TTAACAAAAT
1026128 TAAACCC
1 TAAACCC
1026135 TAAACCC
1 TAAACCC
1026142 TAAACCC
1 TAAACCC
1026149 TAAAC
1 TAAAC
1026154 TAACAAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:1026874 original size:29 final size:29
Alignment explanation
Indices: 1026832--1026891 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
1026822 CATGCAGAGA
*
1026832 CTCCAAGCTCGCCCGGATGCCGTGGCGAC
1 CTCCAAGCTCGCCCGGATGCCATGGCGAC
* *
1026861 CTCCAAGGTCGCCCGGATGGCATGGCGAC
1 CTCCAAGCTCGCCCGGATGCCATGGCGAC
1026890 CT
1 CT
1026892 ACGAAAACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.15, C:0.38, G:0.32, T:0.15
Consensus pattern (29 bp):
CTCCAAGCTCGCCCGGATGCCATGGCGAC
Found at i:1030932 original size:22 final size:22
Alignment explanation
Indices: 1030891--1030932 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
1030881 ATTATCAATC
* *
1030891 TCTCGACATTAAACATTCACAT
1 TCTCAACATTAAACACTCACAT
*
1030913 TCTCAACATTAAACGCTCAC
1 TCTCAACATTAAACACTCAC
1030933 GATTACAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.31, G:0.05, T:0.29
Consensus pattern (22 bp):
TCTCAACATTAAACACTCACAT
Found at i:1032384 original size:25 final size:25
Alignment explanation
Indices: 1032355--1032405 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
1032345 ATCATTTTGA
1032355 TAAAAACATTATTTATTA-AAATATT
1 TAAAAACA-TATTTATTATAAATATT
* *
1032380 TAAAAATATATTTATTATTAATATT
1 TAAAAACATATTTATTATAAATATT
1032405 T
1 T
1032406 TTAATAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
TAAAAACATATTTATTATAAATATT
Found at i:1032408 original size:27 final size:28
Alignment explanation
Indices: 1032367--1032445 Score: 81
Period size: 27 Copynumber: 2.8 Consensus size: 28
1032357 AAAACATTAT
* * *
1032367 TTATTAAAATATTTAAAAATATA-TTTA
1 TTATTAATATTTTTAATAATATATTTTA
1032394 TTATTAATATTTTTAATAATA-ATTTTA
1 TTATTAATATTTTTAATAATATATTTTA
* *
1032421 TAATTTTAATATTATTAATAATATA
1 T--TATTAATATTTTTAATAATATA
1032446 CAAAACTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 23 0.53
29 18 0.42
30 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (28 bp):
TTATTAATATTTTTAATAATATATTTTA
Found at i:1032572 original size:14 final size:14
Alignment explanation
Indices: 1032553--1032587 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
1032543 CAAACACCGT
*
1032553 AAAATATTTTCTGG
1 AAAATATTTTCTAG
1032567 AAAATATTTTCTAG
1 AAAATATTTTCTAG
1032581 AAAATAT
1 AAAATAT
1032588 AATTAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.40
Consensus pattern (14 bp):
AAAATATTTTCTAG
Found at i:1033777 original size:20 final size:20
Alignment explanation
Indices: 1033752--1033807 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
1033742 ATATGAAATT
*
1033752 TGTCCCTAAGGACCTATGTA
1 TGTCCCGAAGGACCTATGTA
*
1033772 TGTCCCGAAGGACCTCTGTATA
1 TGTCCCGAAGGACCTATG--TA
*
1033794 TATCCCGAAGGACC
1 TGTCCCGAAGGACC
1033808 ACGTAGACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 16 0.52
22 15 0.48
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (20 bp):
TGTCCCGAAGGACCTATGTA
Done.