Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008956.1 Hibiscus syriacus cultivar Beakdansim tig00112287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 140070
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:12199 original size:30 final size:30
Alignment explanation
Indices: 12151--12245 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 30
12141 GCACAAATTT
12151 AAACATAAA-GGATTAAAATAATAAAAATAG
1 AAAC-TAAAGGGATTAAAATAATAAAAATAG
* * * * *
12181 AAATTAAAGGGATCAAAATGGAT-GAAATAA
1 AAACTAAAGGGATTAAAAT-AATAAAAATAG
*
12211 AAACTAAAGGGATTAAAATAGTAAAAATAG
1 AAACTAAAGGGATTAAAATAATAAAAATAG
12241 AAACT
1 AAACT
12246 TATGAGTCTA
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
29 5 0.10
30 44 0.86
31 2 0.04
ACGTcount: A:0.61, C:0.04, G:0.15, T:0.20
Consensus pattern (30 bp):
AAACTAAAGGGATTAAAATAATAAAAATAG
Found at i:14009 original size:3 final size:3
Alignment explanation
Indices: 14001--14038 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
13991 TGTAATTAAT
**
14001 TAA TAA TAA TAA CGA TAA TAA TAA T-A TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14039 AAAACCCGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:15257 original size:3 final size:3
Alignment explanation
Indices: 15249--15292 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
15239 TTTGTTTTAT
*
15249 TTA TTA TTA TTA TT- TTG TT- TTA TTA TTA -TA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15293 AATAATTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 8 0.22
3 29 0.78
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15273 original size:16 final size:16
Alignment explanation
Indices: 15246--15292 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
15236 TCATTTGTTT
15246 TATT-TATTATTATTA
1 TATTATATTATTATTA
* * *
15261 TTTTGTTTTATTATTA
1 TATTATATTATTATTA
15277 TATTATATTATTATTA
1 TATTATATTATTATTA
15293 AATAATTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 3 0.12
16 23 0.88
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (16 bp):
TATTATATTATTATTA
Found at i:15285 original size:23 final size:23
Alignment explanation
Indices: 15239--15282 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15229 TTTTATTTCA
15239 TTTGTTTTATTTATTATTATTAT
1 TTTGTTTTATTTATTATTATTAT
15262 TTTGTTTTA-TTATTA-TATTAT
1 TTTGTTTTATTTATTATTATTAT
15283 ATTATTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 6 0.29
22 6 0.29
23 9 0.43
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (23 bp):
TTTGTTTTATTTATTATTATTAT
Found at i:21281 original size:22 final size:22
Alignment explanation
Indices: 21253--21329 Score: 145
Period size: 22 Copynumber: 3.5 Consensus size: 22
21243 TACATCTACC
21253 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
21275 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
21297 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
21319 TTCAAAGATGA
1 TTCAAAGATGA
21330 AAGCTTTATT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:22140 original size:159 final size:164
Alignment explanation
Indices: 21842--22159 Score: 452
Period size: 159 Copynumber: 2.0 Consensus size: 164
21832 AGAATGAACA
21842 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCCAAAAAATAATAATGAGAAAA
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTT---AAAAATAATAATGAGAAAA
**
21907 TGATTTCCATAGCTTCTCATTTTATCTTTTCTAAAATGAAATTGTTAAAAAGTAAGAAAACGATT
63 TGATTTCCATAGCTTCTCATTACATCTTTTCTAAAATGAAATTGTTAAAAAGTAAGAAAACGATT
* *
21972 TCCTTAGTTTTTTACTTAGTAAACTATTTCCAACAGCC
128 TCCATAGTTTCTTACTTAGT-AACTATTTCCAACAGCC
**
22010 TTATCTTGAGATTGGGGCATGTTACCC-ATC-ACATGTTATTT-TGAA-AATAATGAGAAAATGA
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTAAAAATAATAATGAGAAAATGA
* * * *
22071 TTT-CATAGTTTCTCA-TACATCTTTTCTAAAAATGAAATT-TTGAATAGTAAGAAAACGATTTT
66 TTTCCATAGCTTCTCATTACATCTTTTCT-AAAATGAAATTGTTAAAAAGTAAGAAAACGATTTC
22133 CATAGTTTCTTACTTAGTAACTATTTC
130 CATAGTTTCTTACTTAGTAACTATTTC
22160 TCACATTTGT
Statistics
Matches: 139, Mismatches: 10, Indels: 12
0.86 0.06 0.07
Matches are distributed among these distances:
158 9 0.06
159 46 0.33
160 22 0.16
161 19 0.14
162 2 0.01
166 11 0.08
167 3 0.02
168 27 0.19
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (164 bp):
TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTAAAAATAATAATGAGAAAATGA
TTTCCATAGCTTCTCATTACATCTTTTCTAAAATGAAATTGTTAAAAAGTAAGAAAACGATTTCC
ATAGTTTCTTACTTAGTAACTATTTCCAACAGCC
Found at i:22461 original size:113 final size:110
Alignment explanation
Indices: 22299--22715 Score: 585
Period size: 113 Copynumber: 3.8 Consensus size: 110
22289 TTTGAGGGTC
* *
22299 ATCAGCATTTCCA-GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
1 ATCAGCATTACCAGGAAGAGTTCATAATAAGAAGAACTCATCT---GAAGGAAGAAGAAGTTCAT
* *
22363 AATGAGAAGAACTTGTTTAACCTTTTGCTTGAATTCATCATTCGATGG
63 AATGAGAAGAACTTATTCAACCTTTTGCTTGAATTCATCATTCGATGG
* * *
22411 ATCAGCATTACCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAATAAGAAGTTCAT
1 ATCAGCATTACCAGGAAGAGTTCATAATAAGAAGAACTCATCT---GAAGGAAGAAGAAGTTCAT
*
22476 AATGAGAAGAACTTATTCAACCTTTCGCTTGAATTCATCATTCGATGG
63 AATGAGAAGAACTTATTCAACCTTTTGCTTGAATTCATCATTCGATGG
*
22524 ATCAGCATTACC-GGTAGAGTTCATAATAAGAAGAACTCATCTG-A-G-AGAAGAAGTTCAT-AT
1 ATCAGCATTACCAGGAAGAGTTCATAATAAGAAGAACTCATCTGAAGGAAGAAGAAGTTCATAAT
* * * *
22584 GAGAAGAATTTATTCAACTTTTTGCTCGATTTCATCATTCGATGG
66 GAGAAGAACTTATTCAACCTTTTGCTTGAATTCATCATTCGATGG
* *
22629 ATCAGTATTGCCAGGAAGAGTTCATAATAAGAAGAACTCATCTGAAGGAAGAAGAAGTTCATAAT
1 ATCAGCATTACCAGGAAGAGTTCATAATAAGAAGAACTCATCTGAAGGAAGAAGAAGTTCATAAT
* *
22694 GAGAAGAGCTTGTTCAACCTTT
66 GAGAAGAACTTATTCAACCTTT
22716 GTTTGATGCT
Statistics
Matches: 279, Mismatches: 20, Indels: 14
0.89 0.06 0.04
Matches are distributed among these distances:
105 52 0.19
106 42 0.15
107 2 0.01
108 2 0.01
109 14 0.05
110 20 0.07
112 41 0.15
113 106 0.38
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (110 bp):
ATCAGCATTACCAGGAAGAGTTCATAATAAGAAGAACTCATCTGAAGGAAGAAGAAGTTCATAAT
GAGAAGAACTTATTCAACCTTTTGCTTGAATTCATCATTCGATGG
Found at i:24395 original size:3 final size:3
Alignment explanation
Indices: 24382--24451 Score: 60
Period size: 3 Copynumber: 24.3 Consensus size: 3
24372 TTAATTGCAA
* *
24382 TAT TAT T-T TAT TAT TAT TAT TAT TATT TAT TGCT T-T AAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT T-AT TAT TAT TAT TAT
*
24427 T-T CAT TAT TAT TAT T-T T-T TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
24452 TATATATATA
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
2 8 0.14
3 43 0.77
4 5 0.09
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:25422 original size:20 final size:19
Alignment explanation
Indices: 25397--25438 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
25387 ATATTTTATA
25397 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
25417 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
25436 AAT
1 AAT
25439 ATCAAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:25527 original size:29 final size:29
Alignment explanation
Indices: 25494--25550 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
25484 ATATTTCTAA
25494 ATAAATAAATATTTTATTT-ATAAATATAT
1 ATAAATAAATATTTT-TTTCATAAATATAT
* *
25523 ATAAATTAATATTTTTTTCATAATTATA
1 ATAAATAAATATTTTTTTCATAAATATA
25551 ATTTGAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 22 0.88
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (29 bp):
ATAAATAAATATTTTTTTCATAAATATAT
Found at i:26335 original size:22 final size:22
Alignment explanation
Indices: 26304--26347 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26294 TTTATACATC
* *
26304 TATTTTAAAAAGATTAAAGACG
1 TATTTCAAAAAAATTAAAGACG
26326 TATTTCAAAAAAATTAAAGACG
1 TATTTCAAAAAAATTAAAGACG
26348 CACTATACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.30
Consensus pattern (22 bp):
TATTTCAAAAAAATTAAAGACG
Found at i:30563 original size:19 final size:18
Alignment explanation
Indices: 30539--30574 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
30529 TAATAAAATT
30539 AATTTAATAATCATAATAA
1 AATTTAATAATC-TAATAA
*
30558 AATTTATTAATCTAATA
1 AATTTAATAATCTAATA
30575 GTTATAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTTAATAATCTAATAA
Found at i:30568 original size:27 final size:28
Alignment explanation
Indices: 30536--30598 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
30526 ATTTAATAAA
*
30536 ATTAATTTAATAATCATAA-TAAAATTT
1 ATTAATCTAATAATCATAATTAAAATTT
* *
30563 ATTAATCTAATAGTTATAATTAAAATTT
1 ATTAATCTAATAATCATAATTAAAATTT
*
30591 -TCAATCTA
1 ATTAATCTA
30599 GAGCATAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 23 0.74
28 8 0.26
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (28 bp):
ATTAATCTAATAATCATAATTAAAATTT
Found at i:31475 original size:2 final size:2
Alignment explanation
Indices: 31468--31496 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
31458 GGATATTTTC
31468 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
31497 ATACTCCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33316 original size:43 final size:43
Alignment explanation
Indices: 33255--33340 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
33245 TATAAGAAAG
*
33255 GGAGGCCTCGTTAAAACCCCTTTCATAACCGTCAAAAACACTA
1 GGAGGCCTCGTTAAAACCCCCTTCATAACCGTCAAAAACACTA
33298 GGAGGCCTCGTTAAAACCCCCTTCATAACCGTCAAAAACACTA
1 GGAGGCCTCGTTAAAACCCCCTTCATAACCGTCAAAAACACTA
33341 AGGTATCTTG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.35, C:0.31, G:0.14, T:0.20
Consensus pattern (43 bp):
GGAGGCCTCGTTAAAACCCCCTTCATAACCGTCAAAAACACTA
Found at i:34396 original size:2 final size:2
Alignment explanation
Indices: 34389--34414 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
34379 AAATATTTAA
34389 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
34415 TTAAAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47790 original size:32 final size:32
Alignment explanation
Indices: 47741--47803 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 32
47731 AACATTATAT
* *
47741 TTTTTTGTATTGAATTTTATTTATTTTTAATTC
1 TTTTTTGTATTGAATTTT-TATACTTTTAATTC
47774 TTTTTT-TATT-ACATTTTTATACTTTTAATT
1 TTTTTTGTATTGA-ATTTTTATACTTTTAATT
47804 ACAATTGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 12 0.44
32 9 0.33
33 6 0.22
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (32 bp):
TTTTTTGTATTGAATTTTTATACTTTTAATTC
Found at i:47798 original size:22 final size:22
Alignment explanation
Indices: 47755--47799 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
47745 TTGTATTGAA
* *
47755 TTTTATTTATTTTTAATTCTTT
1 TTTTATTCATTTTTAATACTTT
47777 TTTTATTACATTTTT-ATACTTT
1 TTTTATT-CATTTTTAATACTTT
47799 T
1 T
47800 AATTACAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTATTCATTTTTAATACTTT
Found at i:48390 original size:19 final size:19
Alignment explanation
Indices: 48366--48470 Score: 102
Period size: 19 Copynumber: 5.2 Consensus size: 19
48356 GCGATTTTGA
48366 AAAATGTGTTGCGATAGTT
1 AAAATGTGTTGCGATAGTT
*
48385 AAAATGTGTTGTGATAGTT
1 AAAATGTGTTGCGATAGTT
* *
48404 AAAATGTGTTGCAAGAGTTT
1 AAAATGTGTTGCGATAG-TT
*
48424 GAAAAACGTGTTGTTGCGATAGTG
1 --AAAA--TG-TGTTGCGATAGTT
* *
48448 AAAAAGTGTTGCGATAGTG
1 AAAATGTGTTGCGATAGTT
48467 AAAA
1 AAAA
48471 ATCCAAAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
19 49 0.68
20 3 0.04
22 8 0.11
24 3 0.04
25 9 0.12
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (19 bp):
AAAATGTGTTGCGATAGTT
Found at i:48982 original size:61 final size:61
Alignment explanation
Indices: 48886--49337 Score: 421
Period size: 61 Copynumber: 7.6 Consensus size: 61
48876 GTTGCGATTA
48886 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAACGAATT
1 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAACGAATT
*
48947 TGGAAAATCGCAACGCGAACTTGGACTATCACAACGTGAACTTGGACTATCGCAACGAATT
1 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAACGAATT
* * ** *
49008 TGGAAAATCGCAACGCGAACTTCGACTATCGCAAC--GAATTTGGAAAATCGCAACGCGAACT
1 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAA--CGAATT
* ** * * ** * *
49069 TCGACTATCGCAA--CAAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
1 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAACGAATT
* * *
49128 TGGAAAATCGCAACGCGAACTTCGACTATCGCAAC--GAATTTGGACTATCGCAACGTAAACT
1 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAACG--AATT
** * ** * * *
49189 TGGACTATCGCAA--CGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAACGTGAACT
1 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAAC--GAATT
** * * * * **
49250 TGGACTATCGTAA--CGAATTTGGAC--T---AACGTAAATTTGGAAAATCGCAACGAATT
1 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAACGAATT
* *
49304 TGGAAAATCGCAACACGAACTTGAACTATCGCAA
1 TGGAAAATCGCAACGCGAACTTGGACTATCGCAA
49338 AATCGCGTTG
Statistics
Matches: 319, Mismatches: 53, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
54 14 0.04
56 27 0.08
58 1 0.00
59 80 0.25
61 196 0.61
63 1 0.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.21
Consensus pattern (61 bp):
TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAACGAATT
Found at i:49011 original size:40 final size:40
Alignment explanation
Indices: 48886--49243 Score: 486
Period size: 40 Copynumber: 8.9 Consensus size: 40
48876 GTTGCGATTA
* *
48886 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACT
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAAC--GAATT
** * * ** *
48928 TGGACTATCGCAA--CGAATTTGGAAAATCGCAACGCGAACT
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAA--CGAATT
** * * *
48968 TGGACTATCACAACGTGAACTTGGACTATCGCAACGAATT
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
49008 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
*
49048 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACAAATT
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
49088 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
49128 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
** ** *
49168 TGGACTATCGCAACGTAAACTTGGACTATCGCAACGAATT
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
49208 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACG
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACG
49244 TGAACTTGGA
Statistics
Matches: 284, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
40 257 0.90
42 27 0.10
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (40 bp):
TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATT
Found at i:49272 original size:80 final size:78
Alignment explanation
Indices: 48886--49299 Score: 492
Period size: 80 Copynumber: 5.2 Consensus size: 78
48876 GTTGCGATTA
* * *
48886 TGGAAAATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAACGAATTTGGA
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAAC--GAATTTGGACTATCGCAACGAACTTGGA
** *
48951 AAATCGCAACGCGAACT
64 CTATCGCAA--CGAATT
** * * * ** *
48968 TGGACTATCACAACGTGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGA
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGACTATCGCAA--CGAACTTGGA
49033 CTATCGCAACGAATT
64 CTATCGCAACGAATT
* ** *
49048 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACAAATTTGGAAAATCGCAACGCGAACTTCGA
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGACTATCGCAA--CGAACTTGGA
49113 CTATCGCAACGAATT
64 CTATCGCAACGAATT
49128 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGACTATCGCAACGTAAACTTGGA
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGACTATCGCAACG--AACTTGGA
49193 CTATCGCAACGAATT
64 CTATCGCAACGAATT
* * *
49208 TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGTGAACTTGGACTATCGTAACGAATTTGGA
1 TGGAAAATCGCAACGCGAACTTCGACTATCGCAAC--GAATTTGGACTATCGCAACGAACTTGGA
* *
49273 CTAACG-TA--AATT
64 CTATCGCAACGAATT
49285 TGGAAAATCGCAACG
1 TGGAAAATCGCAACG
49300 AATTTGGAAA
Statistics
Matches: 299, Mismatches: 27, Indels: 17
0.87 0.08 0.05
Matches are distributed among these distances:
77 19 0.06
78 2 0.01
79 1 0.00
80 213 0.71
82 64 0.21
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (78 bp):
TGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGACTATCGCAACGAACTTGGACT
ATCGCAACGAATT
Found at i:49288 original size:35 final size:35
Alignment explanation
Indices: 49240--49307 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
49230 CGACTATCGC
* ** *
49240 AACGTGAACTTGGACTATCGTAACGAATTTGGACT
1 AACGTAAACTTGGAAAATCGCAACGAATTTGGACT
*
49275 AACGTAAATTTGGAAAATCGCAACGAATTTGGA
1 AACGTAAACTTGGAAAATCGCAACGAATTTGGA
49308 AAATCGCAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (35 bp):
AACGTAAACTTGGAAAATCGCAACGAATTTGGACT
Found at i:51533 original size:15 final size:17
Alignment explanation
Indices: 51513--51544 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
51503 TCTTAACTCA
51513 AAATTA-AGG-GAAAAG
1 AAATTACAGGTGAAAAG
51528 AAATTACAGGTGAAAAG
1 AAATTACAGGTGAAAAG
51545 TGAATAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 3 0.20
17 6 0.40
ACGTcount: A:0.56, C:0.03, G:0.25, T:0.16
Consensus pattern (17 bp):
AAATTACAGGTGAAAAG
Found at i:51599 original size:5 final size:5
Alignment explanation
Indices: 51591--51636 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
51581 TGATAAATGT
51591 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG T
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG T
51637 GCATGTAGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (5 bp):
TTTTG
Found at i:55254 original size:60 final size:60
Alignment explanation
Indices: 55154--55298 Score: 138
Period size: 60 Copynumber: 2.4 Consensus size: 60
55144 TATGACCCTA
* * * *
55154 ATTTTAAATTAGCTCCT-AAACTTTTCAATGATTCATTTTCATTCCTA-GAA-TATGACTA-TC
1 ATTTTAAATTA-ATCCTCAAACTTTTCAATCATTCAATTTCA-TCC-ACAAACTATGA-TATTC
*
55214 ATTTTAAATTAATCCTCAAACTTTTGAA-CATATCAATTTCATCCACAAACTATGATATTC
1 ATTTTAAATTAATCCTCAAACTTTTCAATCAT-TCAATTTCATCCACAAACTATGATATTC
* * *
55274 ATTCTAAACTAGTCCTCAAACTTTT
1 ATTTTAAATTAATCCTCAAACTTTT
55299 TTAAAAATTC
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
58 1 0.01
59 13 0.18
60 58 0.81
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (60 bp):
ATTTTAAATTAATCCTCAAACTTTTCAATCATTCAATTTCATCCACAAACTATGATATTC
Found at i:66380 original size:22 final size:21
Alignment explanation
Indices: 66339--66381 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
66329 GTAGCGGTAT
*
66339 TGTAGCAGGGTATCGATTCCC
1 TGTAGCAGGGAATCGATTCCC
*
66360 TGTAGCAGGAGAATCGGTTCCC
1 TGTAGCAGG-GAATCGATTCCC
66382 CTCTTTGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (21 bp):
TGTAGCAGGGAATCGATTCCC
Found at i:67132 original size:31 final size:31
Alignment explanation
Indices: 67065--67132 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
67055 TCATTCTATT
* * *
67065 ATACATGTATTTTGATAAAATATCCAATGTG
1 ATACTTGTACTTTGATAAAATATCCAATATG
**
67096 ATACTTGTACTTTGATAAAATATTGAATATG
1 ATACTTGTACTTTGATAAAATATCCAATATG
*
67127 GTACTT
1 ATACTT
67133 CAACTATCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (31 bp):
ATACTTGTACTTTGATAAAATATCCAATATG
Found at i:79280 original size:20 final size:20
Alignment explanation
Indices: 79255--79356 Score: 159
Period size: 20 Copynumber: 5.1 Consensus size: 20
79245 CGTTGCGATT
79255 TTCTGACTATCGCAACGCGA
1 TTCTGACTATCGCAACGCGA
*
79275 TTCTGACTATCGCAACGAGA
1 TTCTGACTATCGCAACGCGA
*
79295 TTTTGACTATCGCAACGCGA
1 TTCTGACTATCGCAACGCGA
*
79315 TTCTGACAATCGCAACGCGA
1 TTCTGACTATCGCAACGCGA
* *
79335 TGCTGACTATCGCAATGCGA
1 TTCTGACTATCGCAACGCGA
79355 TT
1 TT
79357 TTCAAAGCGC
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 73 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (20 bp):
TTCTGACTATCGCAACGCGA
Found at i:79982 original size:19 final size:19
Alignment explanation
Indices: 79958--79997 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
79948 AGAATCGTAA
*
79958 TGCGATTTTAATTTTGCGT
1 TGCGATTTTAATTTCGCGT
*
79977 TGCGATTTTCATTTCGCGT
1 TGCGATTTTAATTTCGCGT
79996 TG
1 TG
79998 TGATAGTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.15, G:0.23, T:0.50
Consensus pattern (19 bp):
TGCGATTTTAATTTCGCGT
Found at i:80035 original size:20 final size:19
Alignment explanation
Indices: 79975--80038 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
79965 TTAATTTTGC
** *
79975 GTTGCGATTTTCATTTCGC
1 GTTGCGATAGTCATTTCGT
*
79994 GTTGTGATAGTCAAATTT-GT
1 GTTGCGATAGTC--ATTTCGT
80014 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCA-TTTCGT
80034 GTTGC
1 GTTGC
80039 AATTTTAAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 12 0.33
20 19 0.53
21 4 0.11
ACGTcount: A:0.16, C:0.14, G:0.25, T:0.45
Consensus pattern (19 bp):
GTTGCGATAGTCATTTCGT
Found at i:81799 original size:18 final size:18
Alignment explanation
Indices: 81776--81825 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
81766 TTTACTCGTA
81776 ATTTCACTTAGATTAACC
1 ATTTCACTTAGATTAACC
81794 ATTTCACTTAGATTAACC
1 ATTTCACTTAGATTAACC
81812 ATTTCACTTAGATT
1 ATTTCACTTAGATT
81826 GCTTAGAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (18 bp):
ATTTCACTTAGATTAACC
Found at i:82012 original size:20 final size:20
Alignment explanation
Indices: 81973--82038 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
81963 TAGTTTACTT
81973 TCGCAACGCGAAAA-GACTA
1 TCGCAACGCGAAAATGACTA
*
81992 TCGCAACGCAAAAATGACTA
1 TCGCAACGCGAAAATGACTA
* **
82012 TCGCAACGGGAATTTGACTA
1 TCGCAACGCGAAAATGACTA
82032 TCGCAAC
1 TCGCAAC
82039 AAAAGAATCG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
19 13 0.32
20 28 0.68
ACGTcount: A:0.38, C:0.26, G:0.20, T:0.17
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:82137 original size:20 final size:20
Alignment explanation
Indices: 82108--82172 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
82098 TTCGCGTTCG
82108 CAACGCGAAAATGACTATCA
1 CAACGCGAAAATGACTATCA
* * *
82128 CAACGTGAAAATGAATATCG
1 CAACGCGAAAATGACTATCA
**
82148 CAACGCGAATTTGACTATCA
1 CAACGCGAAAATGACTATCA
82168 CAACG
1 CAACG
82173 AAAGAATCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.18
Consensus pattern (20 bp):
CAACGCGAAAATGACTATCA
Found at i:82225 original size:133 final size:132
Alignment explanation
Indices: 81972--82238 Score: 426
Period size: 133 Copynumber: 2.0 Consensus size: 132
81962 ATAGTTTACT
* * * *
81972 TTCGCAACGCGAAAAGACTATCGCAACGCAAAAATGACTATCGCAACGGGAATTTGACTATCGCA
1 TTCGCAACGCGAAAAGACTATCACAACGCAAAAATGAATATCGCAACGCGAATTTGACTATCACA
* * * *
82037 ACAAAAGAATCGCAATGCGAAATGAAAATCGCATTGTGATTCTCTCGTTGCGATAGTCAAATTCG
66 ACAAAAGAATCACAATGCGAAATGAAAATCGCATTGCGATCCTCTCGTTGCGATAGTCAAATTCA
82102 CG
131 CG
**
82104 TTCGCAACGCGAAAATGACTATCACAACGTGAAAATGAATATCGCAACGCGAATTTGACTATCAC
1 TTCGCAACGCGAAAA-GACTATCACAACGCAAAAATGAATATCGCAACGCGAATTTGACTATCAC
*
82169 AACGAAAGAATCACAATGCGAAATGAAAATCGCATTGCGATCCTCTCGTTGCGATAGTCAAATTC
65 AACAAAAGAATCACAATGCGAAATGAAAATCGCATTGCGATCCTCTCGTTGCGATAGTCAAATTC
82234 ACG
130 ACG
82237 TT
1 TT
82239 ACGATAGTCA
Statistics
Matches: 123, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
132 15 0.12
133 108 0.88
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (132 bp):
TTCGCAACGCGAAAAGACTATCACAACGCAAAAATGAATATCGCAACGCGAATTTGACTATCACA
ACAAAAGAATCACAATGCGAAATGAAAATCGCATTGCGATCCTCTCGTTGCGATAGTCAAATTCA
CG
Found at i:82843 original size:21 final size:21
Alignment explanation
Indices: 82752--82856 Score: 68
Period size: 21 Copynumber: 5.0 Consensus size: 21
82742 GACTCACCTG
*
82752 TCATCGTTCAAGAGGCCTC-C
1 TCATCGTTCAAGAGGCCACTC
* * * *
82772 CCTATCATTCAAGAGGCCCCTA
1 TC-ATCGTTCAAGAGGCCACTC
** * *
82794 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAGGCCACTC
* * *
82815 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCACTC
* *
82836 TCATCGTTGAAGAGGTCACTC
1 TCATCGTTCAAGAGGCCACTC
82857 CCAATATTAT
Statistics
Matches: 62, Mismatches: 21, Indels: 3
0.72 0.24 0.03
Matches are distributed among these distances:
20 1 0.02
21 60 0.97
22 1 0.02
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCACTC
Found at i:84293 original size:14 final size:14
Alignment explanation
Indices: 84256--84317 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
84246 TTGCTTGTTT
*
84256 AATTGATTTATAAA
1 AATTGATTTGTAAA
84270 AATTGATTTGTAAA
1 AATTGATTTGTAAA
* *
84284 AGTTGATTTGTTTAA
1 AATTGATTTG-TAAA
* *
84299 TATTGATGTGTAAA
1 AATTGATTTGTAAA
84313 TAATT
1 -AATT
84318 CTTATTTGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 25 0.66
15 13 0.34
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.47
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:84441 original size:20 final size:20
Alignment explanation
Indices: 84416--84467 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
84406 AGGTACACTT
*
84416 TCGCAACGCTAAA-CTCAAAA
1 TCGCAACGCGAAAGC-CAAAA
*
84436 TCGCAATGCGAAAGCCAAAA
1 TCGCAACGCGAAAGCCAAAA
84456 TCGCAACGCGAA
1 TCGCAACGCGAA
84468 GTCAATTCGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.42, C:0.29, G:0.17, T:0.12
Consensus pattern (20 bp):
TCGCAACGCGAAAGCCAAAA
Found at i:84504 original size:20 final size:20
Alignment explanation
Indices: 84463--84715 Score: 213
Period size: 20 Copynumber: 13.7 Consensus size: 20
84453 AAATCGCAAC
84463 GCGA-AGTC-AATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
* * *
84481 GCGATAGTCTAATACGCTTT
1 GCGATAGTCAAATTCGCGTT
*
84501 GCGAT--T----TTCTCGTT
1 GCGATAGTCAAATTCGCGTT
* *
84515 GCGATAGTCAAATACCCGTT
1 GCGATAGTCAAATTCGCGTT
*
84535 GCGATAATCAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
*
84555 GCGATAGTCAAATTCGTGTT
1 GCGATAGTCAAATTCGCGTT
84575 GCGATAGTCAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
*
84595 GCGAT--T----TTCTCGTT
1 GCGATAGTCAAATTCGCGTT
* *
84609 GCGATAGTCAAATACCCGTT
1 GCGATAGTCAAATTCGCGTT
* *
84629 GCGATAATCAAATTCACGTT
1 GCGATAGTCAAATTCGCGTT
* *
84649 GCGAT--T----TTTGAGTT
1 GCGATAGTCAAATTCGCGTT
*
84663 GCGATAATCAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
84683 GCGATAGTCAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
*
84703 GCGATATTCAAAT
1 GCGATAGTCAAAT
84716 GAATGTGTAA
Statistics
Matches: 189, Mismatches: 26, Indels: 38
0.75 0.10 0.15
Matches are distributed among these distances:
14 32 0.17
16 3 0.02
18 7 0.04
19 4 0.02
20 143 0.76
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (20 bp):
GCGATAGTCAAATTCGCGTT
Found at i:84560 original size:74 final size:74
Alignment explanation
Indices: 84463--84715 Score: 239
Period size: 74 Copynumber: 3.4 Consensus size: 74
84453 AAATCGCAAC
* * *
84463 GCGA-AGTC-AATTCGCGTTGCGATAGTCTAATACGCTTTGCGATTTTCTCGTTGCGATAGTCAA
1 GCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCTTTGCGATTTTCTAGTTGCGATAGTCAA
*
84526 ATACCCGTT
66 ATTCCCGTT
* ** * * *
84535 GCGATAATCAAATTCGCGTTGCGATAGTCAAATTCG-TGTTGCGATAGTCAAATTCGCG-TTG-C
1 GCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCT-TTGCGATTTTCTAGTT-GCGATAGTC
** *
84597 GATTTTCTCGTT
64 -AAATTCCCGTT
* * * * * *
84609 GCGATAGTCAAATACCCGTTGCGATAATCAAATTCACGTTGCGATTTT-TGAGTTGCGATAATCA
1 GCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCTTTGCGATTTTCT-AGTTGCGATAGTCA
*
84673 AATTCGCGTT
65 AATTCCCGTT
*
84683 GCGATAGTCAAATTCGCGTTGCGATATTCAAAT
1 GCGATAGTCAAATTCGCGTTGCGATAGTCAAAT
84716 GAATGTGTAA
Statistics
Matches: 141, Mismatches: 31, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
72 4 0.03
73 8 0.06
74 125 0.89
75 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (74 bp):
GCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCTTTGCGATTTTCTAGTTGCGATAGTCAA
ATTCCCGTT
Found at i:84597 original size:94 final size:93
Alignment explanation
Indices: 84463--84653 Score: 321
Period size: 94 Copynumber: 2.1 Consensus size: 93
84453 AAATCGCAAC
* *
84463 GCGA-AGTCAATTCGCGTTGCGATAGTCTAATACGCTTTGCGATTTTCTCGTTGCGATAGTCAAA
1 GCGATAGTCAATTCGCGTTGCGATAGTCAAATACGCGTTGCGATTTTCTCGTTGCGATAGTCAAA
*
84527 TACCCGTTGCGATAATCAAATTCGCGTT
66 TACCCGTTGCGATAATCAAATTCACGTT
* *
84555 GCGATAGTCAAATTCGTGTTGCGATAGTCAAATTCGCGTTGCGATTTTCTCGTTGCGATAGTCAA
1 GCGATAGTC-AATTCGCGTTGCGATAGTCAAATACGCGTTGCGATTTTCTCGTTGCGATAGTCAA
84620 ATACCCGTTGCGATAATCAAATTCACGTT
65 ATACCCGTTGCGATAATCAAATTCACGTT
84649 GCGAT
1 GCGAT
84654 TTTTGAGTTG
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 4 0.04
93 4 0.04
94 84 0.91
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (93 bp):
GCGATAGTCAATTCGCGTTGCGATAGTCAAATACGCGTTGCGATTTTCTCGTTGCGATAGTCAAA
TACCCGTTGCGATAATCAAATTCACGTT
Found at i:84615 original size:34 final size:37
Alignment explanation
Indices: 84531--84634 Score: 117
Period size: 34 Copynumber: 2.8 Consensus size: 37
84521 GTCAAATACC
*
84531 CGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGT
1 CGTTGCGATAGTCAAATTCGCGTTGCGATA-T---ATTCGT
84572 -GTTGCGATAGTCAAATTCGCGTTGCGAT-T-TTC-T
1 CGTTGCGATAGTCAAATTCGCGTTGCGATATATTCGT
* *
84605 CGTTGCGATAGTCAAATACCCGTTGCGATA
1 CGTTGCGATAGTCAAATTCGCGTTGCGATA
84635 ATCAAATTCA
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
33 1 0.02
34 29 0.50
38 1 0.02
40 27 0.47
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (37 bp):
CGTTGCGATAGTCAAATTCGCGTTGCGATATATTCGT
Found at i:84633 original size:54 final size:54
Alignment explanation
Indices: 84550--84707 Score: 237
Period size: 54 Copynumber: 2.9 Consensus size: 54
84540 AATCAAATTC
*
84550 GCGTTGCGATAGTCAAATTCGTGTTGCGATAGTCAAATTCGCGTTGCGATTTTCT
1 GCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTT-T
* * * *
84605 -CGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCACGTTGCGATTTTT
1 GCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTT
* *
84658 GAGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGAT
1 GCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGAT
84708 ATTCAAATGA
Statistics
Matches: 91, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 90 0.99
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (54 bp):
GCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTT
Found at i:84854 original size:140 final size:140
Alignment explanation
Indices: 84686--84955 Score: 513
Period size: 140 Copynumber: 1.9 Consensus size: 140
84676 TCGCGTTGCG
*
84686 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
84751 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTAAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTAAAAATGTTAAAAGTTTACACATAA
84816 AATACACATA
131 AATACACATA
*
84826 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAATAGATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
*
84891 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTAAAAATGTTAAAAGTTTACACATAA
84956 TACAATGTTT
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 127 1.00
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (140 bp):
ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTAAAAATGTTAAAAGTTTACACATAA
AATACACATA
Found at i:87376 original size:24 final size:24
Alignment explanation
Indices: 87325--87376 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
87315 ATCTGAGTAT
** *
87325 TGACCAAGATCAAAGTCCGGGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
87349 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
87373 TGAC
1 TGAC
87377 TAATACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:88207 original size:20 final size:20
Alignment explanation
Indices: 88182--88297 Score: 162
Period size: 20 Copynumber: 5.8 Consensus size: 20
88172 GAAATTCAGT
88182 GTTGCGATAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
*
88202 GTTGCGATAGTCAGAATCGT
1 GTTGCGATAGTCAGAATCGC
88222 GTTGCGATAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
*
88242 GTTGCGATAGTCATAATCGC
1 GTTGCGATAGTCAGAATCGC
* * *
88262 GTTGCGAT-TTACATATTCGC
1 GTTGCGATAGT-CAGAATCGC
*
88282 ATTGCGATAGTCAGAA
1 GTTGCGATAGTCAGAA
88298 AATCACAACG
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
19 1 0.01
20 83 0.98
21 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (20 bp):
GTTGCGATAGTCAGAATCGC
Found at i:89457 original size:24 final size:24
Alignment explanation
Indices: 89430--89497 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
89420 TCAAATTTGA
* * *
89430 ATTCTGTTATGATACCTGACCTGG
1 ATTCTGATATGATACATGACATGG
* *
89454 ATTCTGATCTGATACATAACATGG
1 ATTCTGATATGATACATGACATGG
* *
89478 ATTATGATATGATACTTGAC
1 ATTCTGATATGATACATGAC
89498 TTGAATTATG
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (24 bp):
ATTCTGATATGATACATGACATGG
Found at i:89505 original size:24 final size:24
Alignment explanation
Indices: 89426--89507 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
89416 GATTTCAAAT
* * *
89426 TTGAATTCTGTTATGATACCTGAC
1 TTGAATTATGATATGATACATGAC
* * * * *
89450 CTGGATTCTGATCTGATACATAAC
1 TTGAATTATGATATGATACATGAC
* * *
89474 ATGGATTATGATATGATACTTGAC
1 TTGAATTATGATATGATACATGAC
89498 TTGAATTATG
1 TTGAATTATG
89508 TTTTGATTTT
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (24 bp):
TTGAATTATGATATGATACATGAC
Found at i:91908 original size:17 final size:17
Alignment explanation
Indices: 91886--91918 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
91876 TTTCTGAAAT
91886 TTTAAAT-TTTTATATAA
1 TTTAAATATTTT-TATAA
91903 TTTAAATATTTTTATA
1 TTTAAATATTTTTATA
91919 TTTGTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTAAATATTTTTATAA
Found at i:91947 original size:26 final size:26
Alignment explanation
Indices: 91882--91947 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 26
91872 TATGTTTCTG
* *
91882 AAATTTTA-AATTTTTATATAATTTA
1 AAATTTTATAATTTGTATATAATATA
91907 AATATTTT-TATATTTGTAT-TAATAATA
1 AA-ATTTTATA-ATTTGTATATAAT-ATA
91934 AAATTTTATAATTT
1 AAATTTTATAATTT
91948 TACATCCTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
25 2 0.06
26 19 0.56
27 13 0.38
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (26 bp):
AAATTTTATAATTTGTATATAATATA
Found at i:92389 original size:4 final size:4
Alignment explanation
Indices: 92380--92410 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
92370 AAAAGAAGGG
92380 AATA AATA AATA AATA AATA AATA AATA AAT
1 AATA AATA AATA AATA AATA AATA AATA AAT
92411 GTATAAGCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:94331 original size:2 final size:2
Alignment explanation
Indices: 94320--94358 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
94310 TCTCCATCCC
94320 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94359 AACAATTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:96659 original size:22 final size:22
Alignment explanation
Indices: 96598--96659 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
96588 ATTTGTATCG
96598 TATTAATTTTTTATTTATCATT
1 TATTAATTTTTTATTTATCATT
* * *
96620 TATAAACTTGTTATTTAT-ATTT
1 TATTAATTTTTTATTTATCA-TT
*
96642 TATTAATTTTTTAATTAT
1 TATTAATTTTTTATTTAT
96660 TAATTTAACA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (22 bp):
TATTAATTTTTTATTTATCATT
Found at i:97389 original size:150 final size:151
Alignment explanation
Indices: 97118--97418 Score: 595
Period size: 150 Copynumber: 2.0 Consensus size: 151
97108 TGGAAGAGCG
97118 AATTAAGAACATGAGAAACGGAAAGAGATTGTAATTATATTACAATATCCTGTGGCTGTGGGTGT
1 AATTAAGAACATGAGAAACGGAAAGAGATTGTAATTATATTACAATATCCTGTGGCTGTGGGTGT
97183 GGGTAAATTACAACAAAGTTACATTACATGAGACTCAACCTCAACTCGAGCATTATGGCGTCACA
66 GGGTAAATTACAACAAAGTTACATTACATGAGACTCAACCTCAACTCGAGCATTATGGCGTCACA
97248 AAATTGGGGC-TCCTGTCACA
131 AAATTGGGGCGTCCTGTCACA
97268 AATTAAGAACATGAGAAACGGAAAGAGATTGTAATTATATTACAATATCCTGTGGCTGTGGGTGT
1 AATTAAGAACATGAGAAACGGAAAGAGATTGTAATTATATTACAATATCCTGTGGCTGTGGGTGT
97333 GGGTAAATTACAACAAAGTTACATTACATGAGACTCAACCTCAACTCGAGCATTATGGCGTCACA
66 GGGTAAATTACAACAAAGTTACATTACATGAGACTCAACCTCAACTCGAGCATTATGGCGTCACA
97398 AAATTGGGGCGTCCTGTCACA
131 AAATTGGGGCGTCCTGTCACA
97419 GGGCTTTTTA
Statistics
Matches: 150, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
150 140 0.93
151 10 0.07
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (151 bp):
AATTAAGAACATGAGAAACGGAAAGAGATTGTAATTATATTACAATATCCTGTGGCTGTGGGTGT
GGGTAAATTACAACAAAGTTACATTACATGAGACTCAACCTCAACTCGAGCATTATGGCGTCACA
AAATTGGGGCGTCCTGTCACA
Found at i:113354 original size:35 final size:36
Alignment explanation
Indices: 113284--113354 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 36
113274 TTACCTTCTG
* * *
113284 TTTCAGATGCAATAGGATCTGAATCTGGTTCTTGGC
1 TTTCAGAGGCAATAGGATCCGAAACTGGTTCTTGGC
113320 TTTCAGAGGCAATA-GATCCGAAACTGGTTCTTGGC
1 TTTCAGAGGCAATAGGATCCGAAACTGGTTCTTGGC
113355 GAATGCTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 19 0.59
36 13 0.41
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (36 bp):
TTTCAGAGGCAATAGGATCCGAAACTGGTTCTTGGC
Found at i:115733 original size:19 final size:18
Alignment explanation
Indices: 115687--115742 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
115677 ACCTGATACC
115687 ATGTAGAAAACAGACTGT
1 ATGTAGAAAACAGACTGT
* *
115705 A-GAAAGAAAACAGTCTGT
1 ATG-TAGAAAACAGACTGT
115723 ATTGTAGAAAACAGACTGT
1 A-TGTAGAAAACAGACTGT
115742 A
1 A
115743 GGAAACAGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
17 1 0.03
18 15 0.48
19 14 0.45
20 1 0.03
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.21
Consensus pattern (18 bp):
ATGTAGAAAACAGACTGT
Found at i:117505 original size:19 final size:18
Alignment explanation
Indices: 117471--117507 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
117461 TTTTAATTTT
117471 TTAAAATATATATATATA
1 TTAAAATATATATATATA
117489 TTAAAGATAT-TAT-TATA
1 TTAAA-ATATATATATATA
117506 TT
1 TT
117508 TATAAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 8 0.44
19 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
TTAAAATATATATATATA
Found at i:117602 original size:29 final size:29
Alignment explanation
Indices: 117501--117590 Score: 162
Period size: 29 Copynumber: 3.1 Consensus size: 29
117491 AAAGATATTA
117501 TTATATTTATAAAAACAAATCATAATTTCT
1 TTATATTTAT-AAAACAAATCATAATTTCT
117531 TTATATTTATAAAACAAATCATAATTTCT
1 TTATATTTATAAAACAAATCATAATTTCT
*
117560 TTATATTTATAAAACAAACCATAATTTCT
1 TTATATTTATAAAACAAATCATAATTTCT
117589 TT
1 TT
117591 TAAATTACAA
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
29 49 0.83
30 10 0.17
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (29 bp):
TTATATTTATAAAACAAATCATAATTTCT
Found at i:120282 original size:11 final size:12
Alignment explanation
Indices: 120254--120280 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
120244 CTTCTCAAAA
120254 TTTTATTATATT
1 TTTTATTATATT
120266 TTTTATTATATT
1 TTTTATTATATT
120278 TTT
1 TTT
120281 ATACTAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTATTATATT
Found at i:121736 original size:60 final size:58
Alignment explanation
Indices: 121641--121759 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 58
121631 ACCTCGAATC
121641 TAATATAAAACAAATGTTTCACTCACCTTTGCCTCACTGAAGTCCTAAACAAAATCCT
1 TAATATAAAACAAATGTTTCACTCACCTTTGCCTCACTGAAGTCCTAAACAAAATCCT
*
121699 TAATATAAAACAAATGTGTTGCACTCACCTTTGCCTCACTGGAGTCCTAAACAAAATCCT
1 TAATATAAAACAAATGT-TT-CACTCACCTTTGCCTCACTGAAGTCCTAAACAAAATCCT
121759 T
1 T
121760 TTATCTTTCG
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
58 17 0.29
59 2 0.03
60 39 0.67
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.29
Consensus pattern (58 bp):
TAATATAAAACAAATGTTTCACTCACCTTTGCCTCACTGAAGTCCTAAACAAAATCCT
Found at i:129185 original size:27 final size:27
Alignment explanation
Indices: 129147--129201 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
129137 TGGTGTATGG
*
129147 TTCAAAAGGAAAAACTTTATAATAAAC
1 TTCAAAAGGAAAAACTTTAGAATAAAC
*
129174 TTCAAAAGGAAAAAGTTTAGAATAAAC
1 TTCAAAAGGAAAAACTTTAGAATAAAC
129201 T
1 T
129202 AAGTAGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.55, C:0.09, G:0.11, T:0.25
Consensus pattern (27 bp):
TTCAAAAGGAAAAACTTTAGAATAAAC
Found at i:129823 original size:3 final size:3
Alignment explanation
Indices: 129810--129847 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
129800 ATCTAACCTT
129810 TTA TATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
129848 GTTTATAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:132540 original size:16 final size:16
Alignment explanation
Indices: 132512--132543 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
132502 AATAAATAAT
132512 TATATTAATTTTTTTA
1 TATATTAATTTTTTTA
132528 TATATATAATTTTTTT
1 TATAT-TAATTTTTTT
132544 GATAAATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TATATTAATTTTTTTA
Found at i:132552 original size:18 final size:17
Alignment explanation
Indices: 132517--132552 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
132507 ATAATTATAT
*
132517 TAATTTTTTTATATATA
1 TAATTTTTTTATAAATA
132534 TAATTTTTTTGATAAATA
1 TAATTTTTTT-ATAAATA
132552 T
1 T
132553 GAGGTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TAATTTTTTTATAAATA
Found at i:136166 original size:60 final size:61
Alignment explanation
Indices: 136085--136223 Score: 167
Period size: 60 Copynumber: 2.3 Consensus size: 61
136075 TAAAATGTTT
* * * *
136085 AATTTCATCCCTAAACCATGA-CTATCATCCTAAATTAGTCCTC-AAACTTTTGAATATTTC
1 AATTTCATCCCCAAACTATGACCT-TCATCCTAAATTAGTCCTCAAAACTTTTGAACATTCC
** * * *
136145 AATTTCATCCCCAAACTATGACCTTCATTTTAAATTGGTTCTCAAAATTTTTGAACATTCC
1 AATTTCATCCCCAAACTATGACCTTCATCCTAAATTAGTCCTCAAAACTTTTGAACATTCC
136206 AATTTCAT-CCCAAACTAT
1 AATTTCATCCCCAAACTAT
136224 ACGCATATAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
60 44 0.65
61 24 0.35
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.37
Consensus pattern (61 bp):
AATTTCATCCCCAAACTATGACCTTCATCCTAAATTAGTCCTCAAAACTTTTGAACATTCC
Found at i:136494 original size:60 final size:59
Alignment explanation
Indices: 136342--136518 Score: 169
Period size: 60 Copynumber: 2.9 Consensus size: 59
136332 TTGGAGATAT
* ** * *
136342 AATTGGAATATTCAAAAGTTTGGGGACCAATTTAGAAA-AAGTGTCATAGTTTAGTGATGA
1 AATTAGAATATTCAAAAGTTTAAGGA-CAATTTA-AAATAAGAGTCATAGTTTAGGGATGA
* * * * * *
136402 AATTAGAATGTTAAAAAATTTACGGACTAATTTATAATGAGAGTCATAGTTTAGGGATGA
1 AATTAGAATATTCAAAAGTTTAAGGAC-AATTTAAAATAAGAGTCATAGTTTAGGGATGA
* * *
136462 AATT-GAGATATTCAAAAGTTTAAGGATCAATTTAAAATAAAAGTTATAGTTTGGGGA
1 AATTAGA-ATATTCAAAAGTTTAAGGA-CAATTTAAAATAAGAGTCATAGTTTAGGGA
136519 CATATGATTC
Statistics
Matches: 94, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
59 5 0.05
60 88 0.94
61 1 0.01
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (59 bp):
AATTAGAATATTCAAAAGTTTAAGGACAATTTAAAATAAGAGTCATAGTTTAGGGATGA
Done.