Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4521124
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 14 of 21
Found at i:2659192 original size:12 final size:12
Alignment explanation
Indices: 2659175--2659206 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
2659165 ACTAGCACTG
2659175 GAGCCTTCGTCA
1 GAGCCTTCGTCA
2659187 GAGCCTTCGTCA
1 GAGCCTTCGTCA
*
2659199 GAACCTTC
1 GAGCCTTC
2659207 TTTAAGGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.34, G:0.22, T:0.25
Consensus pattern (12 bp):
GAGCCTTCGTCA
Found at i:2662487 original size:205 final size:206
Alignment explanation
Indices: 2662163--2662547 Score: 558
Period size: 205 Copynumber: 1.8 Consensus size: 206
2662153 ATATCAGAGC
* * *
2662163 ATTTGTGATTTAAACATTTGTAGTACATGCCAACAAAATTTCAAAATAGCAAAATCACATAATGT
1 ATTTATGATTTAAACAATTGCAGTACATGCCAACAAAATTTCAAAAT-----AA-CACATAATGT
* *
2662228 TCAAATCGGTCTGATTTGATCTTCTATAGAGGGTATATTGTCCTGACCTAGCTTTACTCTGATGA
60 TCAAATCGGTCTGATCTGATCTTCTATAAAGGGTATATTGTCCTGACCTAGCTTTACTCTGATGA
* *
2662293 CTTATTTGAATCTACATGTGAAAAATACTCAAATGCTAAGTCTTTGACTTAGTATGTGAGTGTTT
125 CTTATTTGAATCTACATGT-AAAAACACTCAAATGCTAAGGCTTTGACTTAGTATGTGAGTGTTT
2662358 TCACACGTAGGTTCAAAA
189 TCACACGTAGGTTCAAAA
* *
2662376 ATTTATGATTTAAACAATTGCAGTACATGCCAACAAAATTTCAAAAT-A-ACATATTGTTTAAAT
1 ATTTATGATTTAAACAATTGCAGTACATGCCAACAAAATTTCAAAATAACACATAATGTTCAAAT
* * * *
2662439 CGGTCTGATCTGATCTTTTATAAAGGGTATGTTGTCCTGACCTAGCTTTACTCTGTTGACTTCTT
66 CGGTCTGATCTGATCTTCTATAAAGGGTATATTGTCCTGACCTAGCTTTACTCTGATGACTTATT
* *
2662504 TGAATCTACGTGTAAAAACACTCACATGCTAAGGCTTTGACTTA
131 TGAATCTACATGTAAAAACACTCAAATGCTAAGGCTTTGACTTA
2662548 ATGAGACATA
Statistics
Matches: 157, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
204 28 0.18
205 84 0.54
207 1 0.01
213 44 0.28
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.36
Consensus pattern (206 bp):
ATTTATGATTTAAACAATTGCAGTACATGCCAACAAAATTTCAAAATAACACATAATGTTCAAAT
CGGTCTGATCTGATCTTCTATAAAGGGTATATTGTCCTGACCTAGCTTTACTCTGATGACTTATT
TGAATCTACATGTAAAAACACTCAAATGCTAAGGCTTTGACTTAGTATGTGAGTGTTTTCACACG
TAGGTTCAAAA
Found at i:2662858 original size:23 final size:23
Alignment explanation
Indices: 2662832--2662895 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
2662822 AGATTTGTCA
* *
2662832 CGAATGACCATATAGAATTATCC
1 CGAAAGACCGTATAGAATTATCC
*
2662855 CGAAGGACCGTATAGAATTATCC
1 CGAAAGACCGTATAGAATTATCC
*
2662878 CGAAAGACCGCATAGAAT
1 CGAAAGACCGTATAGAAT
2662896 CCTTTAACTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (23 bp):
CGAAAGACCGTATAGAATTATCC
Found at i:2669340 original size:59 final size:59
Alignment explanation
Indices: 2669272--2669451 Score: 272
Period size: 59 Copynumber: 3.1 Consensus size: 59
2669262 CAACAGGCTG
* *
2669272 CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCATGATCTTATGTGT
1 CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACGACCTTATGTGT
* *
2669331 GATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACGACCTTACGTGT
1 CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACGACCTTATGTGT
* * ** *
2669390 CATATTCGGGACTACACTAAAGTATAACTAGTATAGATGGT-GGCACGACCTTATGTGT
1 CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACGACCTTATGTGT
2669448 CATA
1 CATA
2669452 CTCGTGTTAG
Statistics
Matches: 110, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
58 20 0.18
59 90 0.82
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (59 bp):
CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACGACCTTATGTGT
Found at i:2675902 original size:59 final size:59
Alignment explanation
Indices: 2675828--2676023 Score: 277
Period size: 59 Copynumber: 3.3 Consensus size: 59
2675818 CAGTAGGCTG
* * *
2675828 CATATTCGGGGTTGCACTAAAGTATAACTAGTGCATATGGTGGGCATGACCTTATGCGT
1 CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACGACCTTATGTGT
*
2675887 CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACAACCTTATGTGT
1 CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACGACCTTATGTGT
* * * * *
2675946 CATATTTGAGACTGCATTAAAGTATAACTAGTGCAAATGGTGGGCACGACCTTATGTGT
1 CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACGACCTTATGTGT
* *
2676005 CCTACTCGGG-TTAGCACTA
1 CATATTCGGGATT-GCACTA
2676024 CGGTGCATAT
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
58 1 0.01
59 119 0.99
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (59 bp):
CATATTCGGGATTGCACTAAAGTATAACTAGTGCATATGGTGGGCACGACCTTATGTGT
Found at i:2676564 original size:2 final size:2
Alignment explanation
Indices: 2676557--2676603 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
2676547 GAGTTTAAGT
2676557 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2676599 TA TA T
1 TA TA T
2676604 CCATATCACA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2676822 original size:14 final size:14
Alignment explanation
Indices: 2676790--2676823 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2676780 TTGTTTCACT
*
2676790 TAAAACATTTTCTG
1 TAAAACATTTTCTA
*
2676804 GAAAACATTTTCTA
1 TAAAACATTTTCTA
2676818 TAAAAC
1 TAAAAC
2676824 GAATTACATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (14 bp):
TAAAACATTTTCTA
Found at i:2677284 original size:21 final size:22
Alignment explanation
Indices: 2677258--2677306 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
2677248 GAATTTCATT
*
2677258 TTCGCAACTCGA-TTCGCCAAA
1 TTCGCAACTCGATTTCGACAAA
*
2677279 TTCGCAACTCGATTTCGACAAT
1 TTCGCAACTCGATTTCGACAAA
2677301 TTCGCA
1 TTCGCA
2677307 GCTCAATTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.29
Consensus pattern (22 bp):
TTCGCAACTCGATTTCGACAAA
Found at i:2677484 original size:118 final size:120
Alignment explanation
Indices: 2677297--2677525 Score: 345
Period size: 118 Copynumber: 1.9 Consensus size: 120
2677287 TCGATTTCGA
* *
2677297 CAATTTCGCAGCTCAATTACCGATATAGGTAAACACAGTACAAAAATCCGGTAAAAAATCTGAAT
1 CAATTTCGCAACTCAATTACCGATATAGGTAAACACAGTACAAAAATCCGATAAAAAATCTGAAT
*
2677362 TCGCCAATTTGAAAACTGAGTTACAAATTTGGAAAATCCGTGTTGCGAATTTGAC
66 TCGCCAATTTAAAAACTGAGTTACAAATTTGGAAAATCCGTGTTGCGAATTTGAC
* * ** *
2677417 CAATTTCGTAACTTAATTACCGATATA-GTAAACATGGTAGAAAAATCCGAT-AAAAATCTGAAT
1 CAATTTCGCAACTCAATTACCGATATAGGTAAACACAGTACAAAAATCCGATAAAAAATCTGAAT
* * *
2677480 TCGCCAATTTAAAAACTGAGTTTCAAATTTGGCAAATTCGTGTTGC
66 TCGCCAATTTAAAAACTGAGTTACAAATTTGGAAAATCCGTGTTGC
2677526 AAAATGTAAA
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
118 54 0.55
119 20 0.20
120 24 0.24
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (120 bp):
CAATTTCGCAACTCAATTACCGATATAGGTAAACACAGTACAAAAATCCGATAAAAAATCTGAAT
TCGCCAATTTAAAAACTGAGTTACAAATTTGGAAAATCCGTGTTGCGAATTTGAC
Found at i:2682239 original size:72 final size:72
Alignment explanation
Indices: 2682121--2682263 Score: 214
Period size: 72 Copynumber: 2.0 Consensus size: 72
2682111 CACTACATTT
* * * * *
2682121 CCTGAGTTGGTACTTTGCTAAGGTTAGAATTCAGAAATTACATGCAATCTGGGAAAGACGCCTTA
1 CCTGAGTTGGTACTCTGCTAAAGTTAGAATTCAAAAACTACATGCAATCTGGGAAAGACGCCGTA
2682186 TCTTCCA
66 TCTTCCA
* * *
2682193 CCTGAGTTGGTACTCTGCTAAAGTTGGAATTCAAAAACTGCTTGCAATCTGGGAAAGACGCCGTA
1 CCTGAGTTGGTACTCTGCTAAAGTTAGAATTCAAAAACTACATGCAATCTGGGAAAGACGCCGTA
2682258 TCTTCC
66 TCTTCC
2682264 GGGAATGTCG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (72 bp):
CCTGAGTTGGTACTCTGCTAAAGTTAGAATTCAAAAACTACATGCAATCTGGGAAAGACGCCGTA
TCTTCCA
Found at i:2682404 original size:30 final size:29
Alignment explanation
Indices: 2682343--2682405 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 29
2682333 ATCGATCTTG
*
2682343 CCACCGAACTATTTTTTGTCTCAATTCGA
1 CCACCGAACTATTTTTTGACTCAATTCGA
2682372 CCACCGAACT-TTTTAATTGACTCAA-TCAGA
1 CCACCGAACTATTTT--TTGACTCAATTC-GA
2682402 CCAC
1 CCAC
2682406 TCTCGGTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
28 4 0.13
29 12 0.40
30 14 0.47
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (29 bp):
CCACCGAACTATTTTTTGACTCAATTCGA
Found at i:2683087 original size:28 final size:28
Alignment explanation
Indices: 2683033--2683087 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
2683023 GGGAGTTTAT
**
2683033 ATGGGTTTACTGCTTAATGTTAGTATAA
1 ATGGGTTTACTGCTTAATGAGAGTATAA
* * *
2683061 ATGGTTTTACTGCTTACTGAGATTATA
1 ATGGGTTTACTGCTTAATGAGAGTATA
2683088 TGAGTTTAGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (28 bp):
ATGGGTTTACTGCTTAATGAGAGTATAA
Found at i:2683123 original size:12 final size:12
Alignment explanation
Indices: 2683106--2683135 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
2683096 GTGGGTTTAC
2683106 TGTTAGTATATA
1 TGTTAGTATATA
2683118 TGTTAGTATATA
1 TGTTAGTATATA
2683130 TGTTAG
1 TGTTAG
2683136 GGAGTTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (12 bp):
TGTTAGTATATA
Found at i:2683158 original size:58 final size:58
Alignment explanation
Indices: 2683085--2683209 Score: 223
Period size: 58 Copynumber: 2.2 Consensus size: 58
2683075 TACTGAGATT
*
2683085 ATATGAGTTTAGTGGGTTTACTGTTAGTATATATGTTAGTATATATGTTAGGGAGTTC
1 ATATGAGTTTAGTGGGTTTACTGTTAGTATAAATGTTAGTATATATGTTAGGGAGTTC
* *
2683143 ATATGAGTTTTGTGGGTTTACTGTTAGTATAAATGTTAGTATATATGTTAGGGAGTTT
1 ATATGAGTTTAGTGGGTTTACTGTTAGTATAAATGTTAGTATATATGTTAGGGAGTTC
2683201 ATATGAGTT
1 ATATGAGTT
2683210 AATATGAGTT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 64 1.00
ACGTcount: A:0.26, C:0.02, G:0.26, T:0.46
Consensus pattern (58 bp):
ATATGAGTTTAGTGGGTTTACTGTTAGTATAAATGTTAGTATATATGTTAGGGAGTTC
Found at i:2683181 original size:12 final size:12
Alignment explanation
Indices: 2683164--2683193 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
2683154 GTGGGTTTAC
2683164 TGTTAGTATAAA
1 TGTTAGTATAAA
*
2683176 TGTTAGTATATA
1 TGTTAGTATAAA
2683188 TGTTAG
1 TGTTAG
2683194 GGAGTTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (12 bp):
TGTTAGTATAAA
Found at i:2683443 original size:19 final size:19
Alignment explanation
Indices: 2683408--2683450 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
2683398 TATGATATGG
*
2683408 TATGTTTATTTGGATAATT
1 TATGTTTATTTGGATAATC
*
2683427 TATGTTTA-TTGATATAATC
1 TATGTTTATTTG-GATAATC
2683446 TATGT
1 TATGT
2683451 AGTGATAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.28, C:0.02, G:0.14, T:0.56
Consensus pattern (19 bp):
TATGTTTATTTGGATAATC
Found at i:2684222 original size:30 final size:30
Alignment explanation
Indices: 2684171--2684268 Score: 110
Period size: 30 Copynumber: 3.3 Consensus size: 30
2684161 AGCAGAACCA
** *
2684171 AATGAACCAGAAATTAG-TGAGCCCGAAATT
1 AATGAACCAG-AACCAGTTGAGCCAGAAATT
*
2684201 AATGAACCAGAACCAGTTGAGCCAGAAAAT
1 AATGAACCAGAACCAGTTGAGCCAGAAATT
* *
2684231 AATAAACCAGAACCA-TCTGAGCCAGACATT
1 AATGAACCAGAACCAGT-TGAGCCAGAAATT
2684261 AATGAACC
1 AATGAACC
2684269 TGAAATTGAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
29 5 0.09
30 53 0.91
ACGTcount: A:0.45, C:0.21, G:0.17, T:0.16
Consensus pattern (30 bp):
AATGAACCAGAACCAGTTGAGCCAGAAATT
Found at i:2686220 original size:26 final size:26
Alignment explanation
Indices: 2686163--2686275 Score: 149
Period size: 26 Copynumber: 4.3 Consensus size: 26
2686153 AACTTGCTAA
* *
2686163 TACATATTCTTCATGCATACA-GTAAT
1 TACATATTGTTCATGCATA-ATGTTAT
*
2686189 TACATAGTGTT-ACTGCATAATGTTAT
1 TACATATTGTTCA-TGCATAATGTTAT
*
2686215 TGCATATTGTTCATGCATAATGTTAT
1 TACATATTGTTCATGCATAATGTTAT
*
2686241 TACATATTGTTCATGCATATTGTTAT
1 TACATATTGTTCATGCATAATGTTAT
2686267 TACATATTG
1 TACATATTG
2686276 GAATAATTGA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
25 2 0.03
26 74 0.96
27 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.44
Consensus pattern (26 bp):
TACATATTGTTCATGCATAATGTTAT
Found at i:2686246 original size:13 final size:13
Alignment explanation
Indices: 2686191--2686275 Score: 84
Period size: 13 Copynumber: 6.5 Consensus size: 13
2686181 ACAGTAATTA
* *
2686191 CATAGTGTTACTG
1 CATATTGTTATTG
*
2686204 CATAATGTTATTG
1 CATATTGTTATTG
2686217 CATATTGTTCA-TG
1 CATATTGTT-ATTG
* *
2686230 CATAATGTTATTA
1 CATATTGTTATTG
2686243 CATATTGTTCA-TG
1 CATATTGTT-ATTG
*
2686256 CATATTGTTATTA
1 CATATTGTTATTG
2686269 CATATTG
1 CATATTG
2686276 GAATAATTGA
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
12 2 0.03
13 56 0.93
14 2 0.03
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (13 bp):
CATATTGTTATTG
Found at i:2686971 original size:16 final size:16
Alignment explanation
Indices: 2686950--2686992 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
2686940 ACAACCAGTA
2686950 TGTTTTAGATTA-ACTT
1 TGTTTTAGATTACA-TT
* *
2686966 TGTTTTAGCTTGCATT
1 TGTTTTAGATTACATT
2686982 TGTTTTAGATT
1 TGTTTTAGATT
2686993 GATTGGAGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.19, C:0.07, G:0.16, T:0.58
Consensus pattern (16 bp):
TGTTTTAGATTACATT
Found at i:2687474 original size:28 final size:28
Alignment explanation
Indices: 2687437--2687521 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 28
2687427 GTTCTTTGAT
2687437 TAGCTGATATTGTTAGGTTTTGTGGTGA
1 TAGCTGATATTGTTAGGTTTTGTGGTGA
* ****
2687465 TAGCTGATATAGTTAGGACACGTAAGG-GA
1 TAGCTGATATTGTTAGGTTTTGT--GGTGA
*
2687494 TATCTGATATTGTTAGGTTTTGTGGTGA
1 TAGCTGATATTGTTAGGTTTTGTGGTGA
2687522 CAATTGACAA
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
27 2 0.05
28 20 0.47
29 19 0.44
30 2 0.05
ACGTcount: A:0.24, C:0.06, G:0.31, T:0.40
Consensus pattern (28 bp):
TAGCTGATATTGTTAGGTTTTGTGGTGA
Found at i:2687585 original size:14 final size:14
Alignment explanation
Indices: 2687566--2687592 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2687556 GTTCTCCAAA
2687566 TCTTTTGTGTATTT
1 TCTTTTGTGTATTT
2687580 TCTTTTGTGTATT
1 TCTTTTGTGTATT
2687593 GGTCAAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.07, G:0.15, T:0.70
Consensus pattern (14 bp):
TCTTTTGTGTATTT
Found at i:2687803 original size:26 final size:26
Alignment explanation
Indices: 2687764--2687842 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2687754 GTTACATACA
2687764 TTGCATCTTCAATTCTAACACAAGTC
1 TTGCATCTTCAATTCTAACACAAGTC
* *
2687790 TTGCATCTTAAATTCTAACACAAGTA
1 TTGCATCTTCAATTCTAACACAAGTC
2687816 TTGCATCTTCAATTCTAACACAAGTC
1 TTGCATCTTCAATTCTAACACAAGTC
2687842 T
1 T
2687843 ATTAACCCAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (26 bp):
TTGCATCTTCAATTCTAACACAAGTC
Found at i:2691668 original size:6 final size:6
Alignment explanation
Indices: 2691657--2691685 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
2691647 TGATAAACAA
2691657 TTGTGT TTGTGT TTGTGT TTGTGT TTGTG
1 TTGTGT TTGTGT TTGTGT TTGTGT TTGTG
2691686 AGAAATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.34, T:0.66
Consensus pattern (6 bp):
TTGTGT
Found at i:2694386 original size:397 final size:387
Alignment explanation
Indices: 2693620--2694547 Score: 1206
Period size: 397 Copynumber: 2.4 Consensus size: 387
2693610 TTTTTCTATT
* * * * *
2693620 AAACGAGTTAGGTTAAACACATCTAAAATCTCTTTTTTTCTTCTAGTTTTCGGTAATAGTCTTAT
1 AAACCAGTTAGGTTAAACACAACTAAAAACTCTTTTCTT-TTCTAGTTTTCGGTAATAGTCTCAT
* * *
2693685 GCAAGATATAGTTCGTGATTTCTGCAATTGCGTTACTGGACGCTGATCATCTCG-T-TGTATCTT
65 GCAAGATATAGTTCGTGATCTCTGCAATTGTGTTACTGGACGCTGATAATCTCGTTGTGTATCTT
* *
2693748 GGGAGACAAATGAAAAAAATATTTTACTCACTATAAATTAAATGTGACATATCTTTTTGAATATT
130 GGGAGACAAATGAAAAAAATATTTTACCCACTATAAATTAAATGTAACATATCTTTTTGAATATT
* * * **
2693813 CTGAATTAAAAATGATATTATATTATTTCCTTTAATTTGAATATTATCATGGTATATCTTACAGT
195 CTAAAATAAAAAAGATATTATATTATTTCCTTTAATTTGAATATTAAAATGGTATATCTTACAGT
* *
2693878 TCAATAATATATTCTATTAAATGCAATATTAATCGATTACTTCCGGATTTATTCAGATACTCATT
260 TC---AATAGA-T-TATTAAATGCAATATTAATCGATTACTTCCGAATTTATTCAGATACTCATT
* *
2693943 ACTGACCTTACTTTTCAAAATATATTTTCTCAATTCTTCTCCTATGAGAAACTCTATAAATACCG
320 AATGACCTTACTTTTCAAAATATATTTTCTCAATTCTTCTCCTATGACAAACTCTATAAATACCG
2694008 CAC
385 CAC
*
2694011 AAACCAGTTAGGTTCAACACAACTAAAAACTCTTTTCTTTTCTAGTTTTCGGTAATAGTCTCATG
1 AAACCAGTTAGGTTAAACACAACTAAAAACTCTTTTCTTTTCTAGTTTTCGGTAATAGTCTCATG
* *
2694076 CAAGATATAGTTCGTGATCTCTGCAATTGTGTTACTGGATGCTAATAATCTCGTTGTCGTATCTT
66 CAAGATATAGTTCGTGATCTCTGCAATTGTGTTACTGGACGCTGATAATCTCGTTGT-GTATCTT
** **
2694141 TAGAGACAAATG-ACCAAATATTTTACCCACTATAAATTAAATATTTTTCTTAAATGTAACATAT
130 GGGAGACAAATGAAAAAAATATTTTACCCAC--T--A-T-AA-A------TTAAATGTAACATAT
2694205 CTTTTTGAATATTCTAAAATAAAAAAGATATTATATTATTTCCTTTAATTTGAATATTAAAATGG
182 CTTTTTGAATATTCTAAAATAAAAAAGATATTATATTATTTCCTTTAATTTGAATATTAAAATGG
** * *** *
2694270 TATATCTTGTAGTTC-A-CGA-TATTAAATGTTGTATTAATTGATTACTGT-CGAATTTATTCAG
247 TATATCTTACAGTTCAATAGATTATTAAATGCAATATTAATCGATTACT-TCCGAATTTATTCAG
2694331 ATACTCATTAATGACCTTACTTTTCAAAATATATATTT-TCAATTCTTCTCCTATGACAAACTCT
311 ATACTCATTAATGACCTTACTTTTCAAAATATAT-TTTCTCAATTCTTCTCCTATGACAAACTCT
*
2694395 ATAAATACCGCTC
375 ATAAATACCGCAC
* * * *
2694408 AAACTAATTAGGTTAAACACAACTAAAAACTCTTTTCTTTTCTAGTTTTTGGTAATAGCCTCATG
1 AAACCAGTTAGGTTAAACACAACTAAAAACTCTTTTCTTTTCTAGTTTTCGGTAATAGTCTCATG
* * * * *
2694473 CAAGATATAGTTCGTTATCTCTGTATTTGTGTTACTGGACGCTGATAATTTCATTGTTGTATCTT
66 CAAGATATAGTTCGTGATCTCTGCAATTGTGTTACTGGACGCTGATAATCTCGTTG-TGTATCTT
2694538 GGGAGACAAA
130 GGGAGACAAA
2694548 CAACCAAAGA
Statistics
Matches: 470, Mismatches: 48, Indels: 32
0.85 0.09 0.06
Matches are distributed among these distances:
390 73 0.16
391 35 0.07
392 16 0.03
393 17 0.04
394 1 0.00
396 1 0.00
397 230 0.49
398 7 0.01
399 1 0.00
400 1 0.00
401 1 0.00
405 87 0.19
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (387 bp):
AAACCAGTTAGGTTAAACACAACTAAAAACTCTTTTCTTTTCTAGTTTTCGGTAATAGTCTCATG
CAAGATATAGTTCGTGATCTCTGCAATTGTGTTACTGGACGCTGATAATCTCGTTGTGTATCTTG
GGAGACAAATGAAAAAAATATTTTACCCACTATAAATTAAATGTAACATATCTTTTTGAATATTC
TAAAATAAAAAAGATATTATATTATTTCCTTTAATTTGAATATTAAAATGGTATATCTTACAGTT
CAATAGATTATTAAATGCAATATTAATCGATTACTTCCGAATTTATTCAGATACTCATTAATGAC
CTTACTTTTCAAAATATATTTTCTCAATTCTTCTCCTATGACAAACTCTATAAATACCGCAC
Found at i:2712305 original size:31 final size:31
Alignment explanation
Indices: 2712242--2712305 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
2712232 TAGGTCCATA
* *
2712242 AGGAATTACCAATCAGTGTTCAACCTATCAG
1 AGGAATTACCAATCAGTGCTCAACCTACCAG
* *
2712273 AGGAATTACCAA-CAGTGACTGAACCTGCCAG
1 AGGAATTACCAATCAGTG-CTCAACCTACCAG
2712304 AG
1 AG
2712306 TCTTCATAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (31 bp):
AGGAATTACCAATCAGTGCTCAACCTACCAG
Found at i:2713233 original size:59 final size:59
Alignment explanation
Indices: 2713104--2713399 Score: 414
Period size: 59 Copynumber: 5.0 Consensus size: 59
2713094 GCACCCTTTT
* *
2713104 AAAAATAACACCTTTACAAAAATTAATTACGTATTAGACA-CCTTTTAAAAATATTTAC
1 AAAAATAACACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTAC
* * *
2713162 AAAAATAACACCTTAACAGAAATTAATTACATATTAGGCACCCTTTTAAAAATATTAAC
1 AAAAATAACACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTAC
* * * *
2713221 AAAAATAGCACCTTAATAGAAATTATTTACGTATTAGACACCATTTTAAAAATATTTAC
1 AAAAATAACACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTAC
* * * *
2713280 AAAAAGATCACCTTAACAGAAATTAATTACGTATTAGGCACCCTTTTAAAAATATTTAT
1 AAAAATAACACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTAC
* * * * * *
2713339 AAAAATAGCACCTTAATAAAAAGTAACTACGTATTAAACACCCTTTTAAAAATATTTAC
1 AAAAATAACACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTAC
2713398 AA
1 AA
2713400 TCTAAACCAA
Statistics
Matches: 209, Mismatches: 28, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
58 36 0.17
59 173 0.83
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.31
Consensus pattern (59 bp):
AAAAATAACACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTAC
Found at i:2713296 original size:118 final size:117
Alignment explanation
Indices: 2713104--2713399 Score: 457
Period size: 118 Copynumber: 2.5 Consensus size: 117
2713094 GCACCCTTTT
* * * *
2713104 AAAAATAACACCTTTACAAAAATTAATTACGTATTAGACACCTTTTAAAAATATTTACAAAAATA
1 AAAAATAGCACCTTAATAAAAATTAATTACGTATTAGACACCTTTTAAAAATATTTACAAAAAGA
2713169 ACACCTTAACAGAAATTAATTACATATTAGGCACCCTTTTAAAAATATTAAC
66 ACACCTTAACAGAAATTAATTACATATTAGGCACCCTTTTAAAAATATTAAC
* *
2713221 AAAAATAGCACCTTAATAGAAATTATTTACGTATTAGACACCATTTTAAAAATATTTACAAAAAG
1 AAAAATAGCACCTTAATAAAAATTAATTACGTATTAGACACC-TTTTAAAAATATTTACAAAAAG
* * * *
2713286 ATCACCTTAACAGAAATTAATTACGTATTAGGCACCCTTTTAAAAATATTTAT
65 AACACCTTAACAGAAATTAATTACATATTAGGCACCCTTTTAAAAATATTAAC
* * *
2713339 AAAAATAGCACCTTAATAAAAAGTAACTACGTATTAAACACCCTTTTAAAAATATTTACAA
1 AAAAATAGCACCTTAATAAAAATTAATTACGTATTAGACA-CCTTTTAAAAATATTTACAA
2713400 TCTAAACCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
117 37 0.23
118 123 0.76
119 2 0.01
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.31
Consensus pattern (117 bp):
AAAAATAGCACCTTAATAAAAATTAATTACGTATTAGACACCTTTTAAAAATATTTACAAAAAGA
ACACCTTAACAGAAATTAATTACATATTAGGCACCCTTTTAAAAATATTAAC
Found at i:2713934 original size:20 final size:20
Alignment explanation
Indices: 2713909--2713946 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2713899 ACTTCATTTT
*
2713909 TTTTATTCTTAGTGCTATTA
1 TTTTATTCATAGTGCTATTA
2713929 TTTTATTCATAGTGCTAT
1 TTTTATTCATAGTGCTAT
2713947 AAGATATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.58
Consensus pattern (20 bp):
TTTTATTCATAGTGCTATTA
Found at i:2717395 original size:59 final size:59
Alignment explanation
Indices: 2717310--2717660 Score: 530
Period size: 59 Copynumber: 6.0 Consensus size: 59
2717300 ACTTTTACGC
* * * * *
2717310 AAATATCACCCTAACATAAATTAATTACGCATTAGGCACCCTTTTAAAAATATTTACAA
1 AAATAGCACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAA
* *
2717369 AAATAGCACCTTTACAGAAATTAATTACGTATTAGACA-CCTTTTAAAAATATTTAAAA
1 AAATAGCACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAA
*
2717427 AAATTGCACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAA
1 AAATAGCACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAA
* *
2717486 AAATAGCACCTTAATAGAGATTAATTACGTATTAGACACCC-TTT-AAAATATTTACAA
1 AAATAGCACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAA
**
2717543 AAATAGCACCTTAACAGAAATTAATTACGTATTAGGGA-CCTTTTAAAAAATATTTACAA
1 AAATAGCACCTTAACAGAAATTAATTACGTATTAGACACCCTTTT-AAAAATATTTACAA
* * *
2717602 AAATAACACCTTAACAGAAATTAATTACGTATTAGATACCCTTTTAAAATTATTTACAA
1 AAATAGCACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAA
2717661 TCTAAACCAA
Statistics
Matches: 266, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
56 2 0.01
57 50 0.19
58 58 0.22
59 150 0.56
60 6 0.02
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.32
Consensus pattern (59 bp):
AAATAGCACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAA
Found at i:2717612 original size:116 final size:116
Alignment explanation
Indices: 2717310--2717660 Score: 533
Period size: 117 Copynumber: 3.0 Consensus size: 116
2717300 ACTTTTACGC
* * * *
2717310 AAATATCACCCTAACATAAATTAATTACGCATTAGGCACCCTTTTAAAAATATTTACAAAAATAG
1 AAATAGCACCTTAACAGAAATTAATTACGTATTAGGCACCCTTTTAAAAATATTTACAAAAATAG
* * *
2717375 CACCTTTACAGAAATTAATTACGTATTAGACACCTTTTAAAAATATTTAAAA
66 CACCTTAACAGAAATTAATTACGTATTAGACACCCTTT-AAAATATTTACAA
* *
2717427 AAATTGCACCTTAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAAAAATAG
1 AAATAGCACCTTAACAGAAATTAATTACGTATTAGGCACCCTTTTAAAAATATTTACAAAAATAG
* *
2717492 CACCTTAATAGAGATTAATTACGTATTAGACACCCTTTAAAATATTTACAA
66 CACCTTAACAGAAATTAATTACGTATTAGACACCCTTTAAAATATTTACAA
*
2717543 AAATAGCACCTTAACAGAAATTAATTACGTATTAGGGA-CCTTTTAAAAAATATTTACAAAAATA
1 AAATAGCACCTTAACAGAAATTAATTACGTATTAGGCACCCTTTT-AAAAATATTTACAAAAATA
* *
2717607 ACACCTTAACAGAAATTAATTACGTATTAGATACCCTTTTAAAATTATTTACAA
65 GCACCTTAACAGAAATTAATTACGTATTAGACACCC-TTTAAAA-TATTTACAA
2717661 TCTAAACCAA
Statistics
Matches: 213, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
115 6 0.03
116 98 0.46
117 100 0.47
118 9 0.04
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.32
Consensus pattern (116 bp):
AAATAGCACCTTAACAGAAATTAATTACGTATTAGGCACCCTTTTAAAAATATTTACAAAAATAG
CACCTTAACAGAAATTAATTACGTATTAGACACCCTTTAAAATATTTACAA
Found at i:2719670 original size:31 final size:32
Alignment explanation
Indices: 2719595--2719670 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
2719585 TGGGGCCTGC
*
2719595 GAGCCTACCCAAGACAATTCCCAAGGCCACTA
1 GAGCCTACCCAAGAAAATTCCCAAGGCCACTA
* * *
2719627 -AGGCTTACCCAAGAAAATTCTCAAGGCCGC-A
1 GA-GCCTACCCAAGAAAATTCCCAAGGCCACTA
2719658 GAGCCTACCCAAG
1 GAGCCTACCCAAG
2719671 GCTCGACTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
31 12 0.32
32 25 0.68
ACGTcount: A:0.34, C:0.34, G:0.18, T:0.13
Consensus pattern (32 bp):
GAGCCTACCCAAGAAAATTCCCAAGGCCACTA
Found at i:2720594 original size:30 final size:28
Alignment explanation
Indices: 2720560--2720775 Score: 87
Period size: 29 Copynumber: 7.4 Consensus size: 28
2720550 CAAAAATATA
2720560 ACCTTTGTAGAAATTAATTACGTATTAGAC
1 ACCTTT-TA-AAATTAATTACGTATTAGAC
* * ** *
2720590 ACCTTTTAAAAATATTTACAAAAATA-AC
1 ACCTTTTAAAATTAATTAC-GTATTAGAC
**
2720618 ACCTTAACATAAATTAATTACGTATTAGAC
1 ACCTT-TTA-AAATTAATTACGTATTAGAC
* * ** *
2720648 ACCTTTTAAAAATATTTACAAAAATAG-C
1 ACCTTTTAAAATTAATTAC-GTATTAGAC
* ** *
2720676 ACATTAACAGAAATTAATTACGTATTAGGC
1 ACCTT-TTA-AAATTAATTACGTATTAGAC
* * *** *
2720706 ACCCTTTTAAAAATATTTATAAAATAG-C
1 A-CCTTTTAAAATTAATTACGTATTAGAC
**
2720734 ACCTTAACATAAATTAATTACGTATTAGAC
1 ACCTT-TTA-AAATTAATTACGTATTAGAC
2720764 ACCCTTTTAAAA
1 A-CCTTTTAAAA
2720776 ATATTTACAA
Statistics
Matches: 127, Mismatches: 46, Indels: 27
0.63 0.23 0.14
Matches are distributed among these distances:
27 4 0.03
28 33 0.26
29 46 0.36
30 37 0.29
31 7 0.06
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.33
Consensus pattern (28 bp):
ACCTTTTAAAATTAATTACGTATTAGAC
Found at i:2720610 original size:58 final size:59
Alignment explanation
Indices: 2720504--2720785 Score: 374
Period size: 58 Copynumber: 4.8 Consensus size: 59
2720494 AATGTCACCC
* * * * * *
2720504 TAACAAAAATTAATTGCGCATTAGGCATCCTTTTAAAAAATATTTACAAAAATATAACCT
1 TAACAGAAATTAATTACGTATTAGACACCCTTTT-AAAAATATTTACAAAAATAGAACCT
***
2720564 TTGTAGAAATTAATTACGTATTAGACA-CCTTTTAAAAATATTTACAAAAATA-ACACCT
1 TAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAAAAATAGA-ACCT
* * *
2720622 TAACATAAATTAATTACGTATTAGACA-CCTTTTAAAAATATTTACAAAAATAGCACAT
1 TAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAAAAATAGAACCT
* * *
2720680 TAACAGAAATTAATTACGTATTAGGCACCCTTTTAAAAATATTTA-TAAAATAGCACCT
1 TAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAAAAATAGAACCT
*
2720738 TAACATAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAA
1 TAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAA
2720786 TCTAAAACAA
Statistics
Matches: 198, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
57 1 0.01
58 153 0.77
59 24 0.12
60 20 0.10
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (59 bp):
TAACAGAAATTAATTACGTATTAGACACCCTTTTAAAAATATTTACAAAAATAGAACCT
Found at i:2721350 original size:20 final size:20
Alignment explanation
Indices: 2721325--2721362 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2721315 ACTTCACTTT
*
2721325 TTTTATTCTTAGTGCTATTA
1 TTTTATTCATAGTGCTATTA
2721345 TTTTATTCATAGTGCTAT
1 TTTTATTCATAGTGCTAT
2721363 AAGATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.58
Consensus pattern (20 bp):
TTTTATTCATAGTGCTATTA
Found at i:2723758 original size:3 final size:3
Alignment explanation
Indices: 2723750--2723785 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
2723740 ATTGTTGAAT
*
2723750 ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2723786 GATACTGGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:2723846 original size:12 final size:12
Alignment explanation
Indices: 2723829--2723865 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
2723819 AATGAAATTC
2723829 TAAATTATTTTA
1 TAAATTATTTTA
*
2723841 TTAATTATTTTA
1 TAAATTATTTTA
2723853 TAAATTAATTTTA
1 TAAATT-ATTTTA
2723866 AAAAGTATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TAAATTATTTTA
Found at i:2731696 original size:185 final size:186
Alignment explanation
Indices: 2731383--2731756 Score: 741
Period size: 185 Copynumber: 2.0 Consensus size: 186
2731373 AATATGTATG
2731383 AATTTATTACTACTATATTAGGTATGAAATTTTATATAGTTATATTGGTAAATATGTAGTAATAT
1 AATTTATTACTACTATATTAGGTATGAAATTTTATATAGTTATATTGGTAAATATGTAGTAATAT
2731448 AATTTTTATTTAAGTTTAATCTATGGAGTGATTTTAGTGGGAAAGACAATGTTGATCTCTTTAGA
66 AATTTTTATTTAAGTTTAATCTATGGAGTGATTTTAGTGGGAAAGACAATGTTGATCTCTTTAGA
2731513 AAATTTGTGTTCGAGCATCTTTGTATGTAGGTGTGTGTGAGCTTATTCATATTTGA
131 AAATTTGTGTTCGAGCATCTTTGTATGTAGGTGTGTGTGAGCTTATTCATATTTGA
2731569 AATTTATTACTACTATATTAGGTATGAAATTTTA-ATAGTTATATTGGTAAATATGTAGTAATAT
1 AATTTATTACTACTATATTAGGTATGAAATTTTATATAGTTATATTGGTAAATATGTAGTAATAT
2731633 AATTTTTATTTAAGTTTAATCTATGGAGTGATTTTAGTGGGAAAGACAATGTTGATCTCTTTAGA
66 AATTTTTATTTAAGTTTAATCTATGGAGTGATTTTAGTGGGAAAGACAATGTTGATCTCTTTAGA
2731698 AAATTTGTGTTCGAGCATCTTTGTATGTAGGTGTGTGTGAGCTTATTCATATTTGA
131 AAATTTGTGTTCGAGCATCTTTGTATGTAGGTGTGTGTGAGCTTATTCATATTTGA
2731754 AAT
1 AAT
2731757 CAGAGTGTTA
Statistics
Matches: 188, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
185 154 0.82
186 34 0.18
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (186 bp):
AATTTATTACTACTATATTAGGTATGAAATTTTATATAGTTATATTGGTAAATATGTAGTAATAT
AATTTTTATTTAAGTTTAATCTATGGAGTGATTTTAGTGGGAAAGACAATGTTGATCTCTTTAGA
AAATTTGTGTTCGAGCATCTTTGTATGTAGGTGTGTGTGAGCTTATTCATATTTGA
Found at i:2739328 original size:30 final size:30
Alignment explanation
Indices: 2739294--2739368 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
2739284 AAATGGATTT
* * *
2739294 AGTTTAGTGATCAAATTATAAAATTTTG-AA
1 AGTTTAGTGACCAAAGTAT-AAACTTTGAAA
*
2739324 AGTTTGGTGACCAAAGTATAAACTTTGAAA
1 AGTTTAGTGACCAAAGTATAAACTTTGAAA
*
2739354 AGTTTAGGGACCAAA
1 AGTTTAGTGACCAAA
2739369 ATGTAATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 7 0.18
30 31 0.82
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (30 bp):
AGTTTAGTGACCAAAGTATAAACTTTGAAA
Found at i:2744404 original size:32 final size:32
Alignment explanation
Indices: 2744285--2744471 Score: 139
Period size: 32 Copynumber: 5.9 Consensus size: 32
2744275 TACTAGCAGT
* *
2744285 GTGTTGCATTCAGATAATGCACAAG-AATGTTA
1 GTGTTGCATTCAGATAATGCA-TAGTAGTGTTA
* * ** * *
2744317 GTGTTGCATTCAGATAATGTACAACAATGTCA
1 GTGTTGCATTCAGATAATGCATAGTAGTGTTA
* * * *
2744349 TTGTTGTATTCAAATAATTCATAGTAGTGTTA
1 GTGTTGCATTCAGATAATGCATAGTAGTGTTA
* * *
2744381 TTGTTTCATTCAGATAATGCATAGTAGTATTA
1 GTGTTGCATTCAGATAATGCATAGTAGTGTTA
* * *
2744413 GTGTCT-TATTAAGATAAGGCATAGTAGT-TTCA
1 GTGT-TGCATTCAGATAATGCATAGTAGTGTT-A
* *
2744445 GTGTCGCATTCAGATACT-CATAGTAGT
1 GTGTTGCATTCAGATAATGCATAGTAGT
2744472 TATTGTCATT
Statistics
Matches: 123, Mismatches: 28, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
31 12 0.10
32 110 0.89
33 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (32 bp):
GTGTTGCATTCAGATAATGCATAGTAGTGTTA
Found at i:2745788 original size:38 final size:37
Alignment explanation
Indices: 2745705--2745792 Score: 115
Period size: 38 Copynumber: 2.4 Consensus size: 37
2745695 TAGGGAGACA
2745705 ATCCTAAGAAGGACTTAAACGACATCCCAGAAAAATG
1 ATCCTAAGAAGGACTTAAACGACATCCCAGAAAAATG
* * * *
2745742 GTCTTAAGAAGGACTTAAACGA-ATTTTCTAGAAAAATG
1 ATCCTAAGAAGGACTTAAACGACA--TCCCAGAAAAATG
2745780 ATCCTAAGAAGGA
1 ATCCTAAGAAGGA
2745793 AAAAATAGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
36 1 0.02
37 20 0.47
38 22 0.51
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (37 bp):
ATCCTAAGAAGGACTTAAACGACATCCCAGAAAAATG
Found at i:2747083 original size:238 final size:235
Alignment explanation
Indices: 2746702--2747296 Score: 707
Period size: 238 Copynumber: 2.5 Consensus size: 235
2746692 TTATCTTTTT
* * * *
2746702 TTTAAAAAACAATTTTCAGAAATGACTTAAATGAGAAGCTTTGGAAATCACTTTCTCATTTGTCA
1 TTTAAAAAACAATTTTCAGAAAAGATTTAAATGAGAAGCTTTGGAAATCACTTTCTCATTTTTTA
* ** * ** *
2746767 AAAATCATGTGAAAACATCCTATCTGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGTT
66 AAAATCATGTGAAAACATCCTGTCCAAAGGCCTTACAGATGGCCCGAAGGACTTATCATCTCGTT
* *
2746832 CAAAAATCTTATAGATGACCCGAAGGATTTAAGCATCATGCT-CGAAAGACTTACTGATGGTCCG
131 CAAAAAGCTTATAGATGACCCGAAGGATTTAAACATCATG-TACGAAAGACTTACTGATGGTCCG
* * *
2746896 AAGGACTTACTAAGTAA-AATACTTTGGAAATCGTTTTCTTAC
195 AAGGACTTACTAAGTAAGAA-ACTTTGCAAATCG-TTTCGTAA
** *
2746938 TTTAAAAAATCAATTTTCAGAAAAAGATTTAAATTTGAAACTTTGGAAATCACTTTCTCATTTTT
1 TTTAAAAAA-CAATTTTCAG-AAAAGATTTAAATGAGAAGCTTTGGAAATCACTTTCTCATTTTT
* * *
2747003 TAAAAATCATGTGAAAACACCCTGTCCAAAGGCCTTACAGATGGCTCGAATGACTTATCATCTCG
64 TAAAAATCATGTGAAAACATCCTGTCCAAAGGCCTTACAGATGGCCCGAAGGACTTATCATCTCG
** * * *
2747068 TTTGAAAGGCTTATAGATGACCCGAAGGATTTAAACATCATGTACGAAAGACTTATTGATGGTCT
129 TTCAAAAAGCTTATAGATGACCCGAAGGATTTAAACATCATGTACGAAAGACTTACTGATGGTCC
* * *
2747133 GAAGGACTTACTAAGTAAGAAATTTTGCAACTTGTTTCGTAA
194 GAAGGACTTACTAAGTAAGAAACTTTGCAAATCGTTTCGTAA
* *
2747175 TTTAAAAAAAAACAATTTTTAGAAAGGATTTAAATGAGAAGCTTTGG-AA--ACTTTCTCATTTT
1 TTT---AAAAAACAATTTTCAGAAAAGATTTAAATGAGAAGCTTTGGAAATCACTTTCTCATTTT
* * ** * ** *
2747237 TTGAAGAA-CATGTGAAAACATCCTGCCCGTAGGTCTTATGGATGGCCCGAAGAACTTATC
63 TT-AAAAATCATGTGAAAACATCCTGTCCAAAGGCCTTACAGATGGCCCGAAGGACTTATC
2747297 CTATTTCTCA
Statistics
Matches: 305, Mismatches: 46, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
235 57 0.19
236 13 0.04
237 22 0.07
238 196 0.64
239 11 0.04
240 6 0.02
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (235 bp):
TTTAAAAAACAATTTTCAGAAAAGATTTAAATGAGAAGCTTTGGAAATCACTTTCTCATTTTTTA
AAAATCATGTGAAAACATCCTGTCCAAAGGCCTTACAGATGGCCCGAAGGACTTATCATCTCGTT
CAAAAAGCTTATAGATGACCCGAAGGATTTAAACATCATGTACGAAAGACTTACTGATGGTCCGA
AGGACTTACTAAGTAAGAAACTTTGCAAATCGTTTCGTAA
Found at i:2747624 original size:46 final size:46
Alignment explanation
Indices: 2747557--2747692 Score: 227
Period size: 46 Copynumber: 3.0 Consensus size: 46
2747547 CAGGCTTAGC
* *
2747557 TTCTTTGAAAACTCATTTAAAAATCATTAAGAAACTTCTGAAAAGT
1 TTCTTTGAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAAAGT
2747603 TTCTTTGAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAAAGT
1 TTCTTTGAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAAAGT
* * *
2747649 TTCTTTAAAAATTCATTTAAAAATCATCAAGAAACTTCCAAAAA
1 TTCTTTGAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAAA
2747693 TCAGACTTAG
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (46 bp):
TTCTTTGAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAAAGT
Found at i:2747806 original size:54 final size:54
Alignment explanation
Indices: 2747649--2747815 Score: 185
Period size: 53 Copynumber: 3.1 Consensus size: 54
2747639 TCTAAAAAGT
* * *
2747649 TTCTTTAAAAATTCATTTAAAAATCATCAAGAAACTTCC-AAAAATCAGACTTAGC
1 TTCTTTCAAAATTCATTTAAAAAT-ATCAAGAAAC-CCCTAAAAATCAGGCTTAGC
* * * * *
2747704 TTCTTTCAAAATTTATTTAAAAACA-AAAAAAACCCCTAAAAATAAGGCTTAGC
1 TTCTTTCAAAATTCATTTAAAAATATCAAGAAACCCCTAAAAATCAGGCTTAGC
* * * * *
2747757 TTCTTTCAACATTCATCTGAAAATATCAAGAAACCCCTGAAAATCAGGCTTAGT
1 TTCTTTCAAAATTCATTTAAAAATATCAAGAAACCCCTAAAAATCAGGCTTAGC
2747811 TTCTT
1 TTCTT
2747816 AAAGAATCAC
Statistics
Matches: 92, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
52 2 0.02
53 40 0.43
54 29 0.32
55 21 0.23
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
TTCTTTCAAAATTCATTTAAAAATATCAAGAAACCCCTAAAAATCAGGCTTAGC
Found at i:2749934 original size:22 final size:24
Alignment explanation
Indices: 2749907--2749958 Score: 72
Period size: 22 Copynumber: 2.2 Consensus size: 24
2749897 TGTTGAAGTA
2749907 TTTTTCTTTC-TTCTTT-TTTCCT
1 TTTTTCTTTCTTTCTTTCTTTCCT
*
2749929 TTTTTCTTTCTTTTCTTTCTTTTCT
1 TTTTTCTTTC-TTTCTTTCTTTCCT
2749954 TTTTT
1 TTTTT
2749959 ATGTTTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 10 0.38
24 6 0.23
25 10 0.38
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (24 bp):
TTTTTCTTTCTTTCTTTCTTTCCT
Found at i:2749965 original size:14 final size:14
Alignment explanation
Indices: 2749908--2749956 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
2749898 GTTGAAGTAT
*
2749908 TTTTC-TTTCTTCTT
1 TTTTCTTTTCTT-TC
*
2749922 TTTTCCTTT-TTTC
1 TTTTCTTTTCTTTC
2749935 -TTTCTTTTCTTTC
1 TTTTCTTTTCTTTC
2749948 TTTTCTTTT
1 TTTTCTTTT
2749957 TTATGTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 7 0.23
13 5 0.17
14 15 0.50
15 3 0.10
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTCTTTTCTTTC
Found at i:2749966 original size:33 final size:31
Alignment explanation
Indices: 2749908--2749975 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 31
2749898 GTTGAAGTAT
*
2749908 TTTTCTTTCTTCTTTTTTC-CTTTTTTCTTTC
1 TTTTCTTTCTTCTTTTTTCATTTTTTTC-TTC
2749939 TTTTCTTTCTTTTCTTTTTT-ATGTTTTTTCTTC
1 TTTTCTTTC--TTCTTTTTTCAT-TTTTTTCTTC
2749972 TTTT
1 TTTT
2749976 TCGCTATGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 9 0.28
33 16 0.50
34 7 0.22
ACGTcount: A:0.01, C:0.18, G:0.01, T:0.79
Consensus pattern (31 bp):
TTTTCTTTCTTCTTTTTTCATTTTTTTCTTC
Found at i:2749974 original size:19 final size:20
Alignment explanation
Indices: 2749950--2749999 Score: 75
Period size: 22 Copynumber: 2.5 Consensus size: 20
2749940 TTTCTTTCTT
2749950 TTCTTTTT-TATGTTTTTTC
1 TTCTTTTTCTATGTTTTTTC
2749969 TTCTTTTTCGCTATGTTTTTTC
1 TTCTTTTT--CTATGTTTTTTC
2749991 TTCTTTTTC
1 TTCTTTTTC
2750000 GCTATATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.29
20 1 0.04
22 19 0.68
ACGTcount: A:0.04, C:0.16, G:0.06, T:0.74
Consensus pattern (20 bp):
TTCTTTTTCTATGTTTTTTC
Found at i:2749975 original size:9 final size:8
Alignment explanation
Indices: 2749907--2749977 Score: 58
Period size: 9 Copynumber: 8.8 Consensus size: 8
2749897 TGTTGAAGTA
2749907 TTTTTC-T
1 TTTTTCTT
*
2749914 TTCTTC-T
1 TTTTTCTT
*
2749921 TTTTTCCT
1 TTTTTCTT
2749929 TTTTTCTT
1 TTTTTCTT
2749937 TCTTTTCTT
1 T-TTTTCTT
2749946 TCTTTTCTT
1 T-TTTTCTT
*
2749955 TTTTAT-GT
1 TTTT-TCTT
2749963 TTTTTCTT
1 TTTTTCTT
2749971 CTTTTTC
1 -TTTTTC
2749978 GCTATGTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
7 12 0.22
8 18 0.33
9 24 0.44
ACGTcount: A:0.01, C:0.18, G:0.01, T:0.79
Consensus pattern (8 bp):
TTTTTCTT
Found at i:2749977 original size:34 final size:30
Alignment explanation
Indices: 2749907--2749977 Score: 79
Period size: 34 Copynumber: 2.2 Consensus size: 30
2749897 TGTTGAAGTA
2749907 TTTTTCTTTCTTCTTTTTTCCTTTTTTCTT
1 TTTTTCTTTCTTCTTTTTTCCTTTTTTCTT
**
2749937 TCTTTTCTTTCTTTTCTTTTTTATGTTTTTTCTT
1 T-TTTTCTTTC--TTCTTTTTT-CCTTTTTTCTT
2749971 CTTTTTC
1 -TTTTTC
2749978 GCTATGTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
30 1 0.03
31 9 0.26
33 9 0.26
34 14 0.41
35 1 0.03
ACGTcount: A:0.01, C:0.18, G:0.01, T:0.79
Consensus pattern (30 bp):
TTTTTCTTTCTTCTTTTTTCCTTTTTTCTT
Found at i:2750012 original size:25 final size:22
Alignment explanation
Indices: 2749958--2750016 Score: 100
Period size: 22 Copynumber: 2.7 Consensus size: 22
2749948 TTTTCTTTTT
2749958 TATGTTTTTTCTTCTTTTTCGC
1 TATGTTTTTTCTTCTTTTTCGC
2749980 TATGTTTTTTCTTCTTTTTCGC
1 TATGTTTTTTCTTCTTTTTCGC
* *
2750002 TATATTTTTTTTTCT
1 TATGTTTTTTCTTCT
2750017 CTCTATATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.07, C:0.15, G:0.07, T:0.71
Consensus pattern (22 bp):
TATGTTTTTTCTTCTTTTTCGC
Found at i:2751942 original size:31 final size:28
Alignment explanation
Indices: 2751907--2751965 Score: 82
Period size: 31 Copynumber: 2.0 Consensus size: 28
2751897 AAAGAATAAG
*
2751907 ACAAGACAAAAGGAAATCAAGTTAGCAAAAA
1 ACAAGACAAAAAG-AAT-AAGTTA-CAAAAA
2751938 ACAAGACAAAAAGAATAAGTTACAAAAA
1 ACAAGACAAAAAGAATAAGTTACAAAAA
2751966 TGATTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 6 0.22
29 6 0.22
30 3 0.11
31 12 0.44
ACGTcount: A:0.64, C:0.12, G:0.14, T:0.10
Consensus pattern (28 bp):
ACAAGACAAAAAGAATAAGTTACAAAAA
Found at i:2752915 original size:110 final size:110
Alignment explanation
Indices: 2752733--2752955 Score: 437
Period size: 110 Copynumber: 2.0 Consensus size: 110
2752723 AAGGTGTGAT
2752733 AGGGACACCATAAAAAAATCAGGTAATTTTAATATTTTTTTTATCAAAATACAAAGTTTGAGGTC
1 AGGGACACCATAAAAAAATCAGGTAATTTTAATATTTTTTTTATCAAAATACAAAGTTTGAGGTC
*
2752798 TACGAAAACTAGAAAGTGGGTTCGAGAGTCAGTTAGGTGTGGGGA
66 TACGAAAACTAGAAAGTGGGTTCGAGAGTCAGTTACGTGTGGGGA
2752843 AGGGACACCATAAAAAAATCAGGTAATTTTAATATTTTTTTTATCAAAATACAAAGTTTGAGGTC
1 AGGGACACCATAAAAAAATCAGGTAATTTTAATATTTTTTTTATCAAAATACAAAGTTTGAGGTC
2752908 TACGAAAACTAGAAAGTGGGTTCGAGAGTCAGTTACGTGTGGGGA
66 TACGAAAACTAGAAAGTGGGTTCGAGAGTCAGTTACGTGTGGGGA
2752953 AGG
1 AGG
2752956 ATTAACACCC
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 112 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (110 bp):
AGGGACACCATAAAAAAATCAGGTAATTTTAATATTTTTTTTATCAAAATACAAAGTTTGAGGTC
TACGAAAACTAGAAAGTGGGTTCGAGAGTCAGTTACGTGTGGGGA
Found at i:2756167 original size:8 final size:8
Alignment explanation
Indices: 2756154--2756180 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
2756144 TTTTTTATAC
2756154 ATAAATAT
1 ATAAATAT
2756162 ATAAATAT
1 ATAAATAT
2756170 ATAAATAT
1 ATAAATAT
2756178 ATA
1 ATA
2756181 TATGTATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAAATAT
Found at i:2756280 original size:38 final size:35
Alignment explanation
Indices: 2756232--2756660 Score: 282
Period size: 38 Copynumber: 11.9 Consensus size: 35
2756222 TAAATTCCAG
*
2756232 AAAACGATTTTTGAAAATTTATATATTATATAGTTTTT
1 AAAAC-ATTTTTGAAAA-TTATATA-TATATAGTTTTA
* * *
2756270 GAAA-ATATTTTGAAAATATATATAATATATAAATTTTG
1 AAAACAT-TTTTGAAAAT-TATAT-ATATAT-AGTTTTA
*
2756308 AAAACA--TTT----A-TATAT-TATATAGTTTTT
1 AAAACATTTTTGAAAATTATATATATATAGTTTTA
* * *
2756335 AAAACA-TTTTAAAAACTTATATAATGTATAGTTTTTT
1 AAAACATTTTTGAAAA-TTATAT-ATATATAG-TTTTA
2756372 AAAACATTTTTTGAAAAATTATATAATATATAGTTTTA
1 AAAACA-TTTTTG-AAAATTATAT-ATATATAGTTTTA
* * * * *
2756410 AAAATATTTTTAAAAAACTTATATAATGTATAATTTTTT
1 AAAACATTTTT-GAAAA-TTATAT-ATATAT-AGTTTTA
2756449 AAAACATTTTTTTGAAAAATTATATGATATATAGTTTTAA
1 AAAACA--TTTTTG-AAAATTATAT-ATATATAGTTTT-A
2756489 AAAACATTTTTGAAAAATTATATAATATATAGTTTTA
1 AAAACATTTTTG-AAAATTATAT-ATATATAGTTTTA
* *
2756526 AAAACATTTTTTTAAAACT-TATATA-ATA-TTTTA
1 AAAACA-TTTTTGAAAATTATATATATATAGTTTTA
* * *
2756559 AAAACA-TTTTGAAAACTATATAATAAATAGTTTTG
1 AAAACATTTTTGAAAATTATAT-ATATATAGTTTTA
* *
2756594 AAAAC-TCTTTTTAAAAGTATA-ATATATAG-TTTA
1 AAAACAT-TTTTGAAAATTATATATATATAGTTTTA
*
2756627 AAAATATTTTTG-AAATATATATATTATATAGTTT
1 AAAACATTTTTGAAAAT-TATATA-TATATAGTTT
2756661 ATATCATATT
Statistics
Matches: 321, Mismatches: 33, Indels: 76
0.75 0.08 0.18
Matches are distributed among these distances:
27 11 0.03
28 8 0.02
30 5 0.02
31 10 0.03
32 8 0.02
33 29 0.09
34 20 0.06
35 19 0.06
36 29 0.09
37 51 0.16
38 67 0.21
39 34 0.11
40 21 0.07
41 9 0.03
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (35 bp):
AAAACATTTTTGAAAATTATATATATATAGTTTTA
Found at i:2756345 original size:28 final size:28
Alignment explanation
Indices: 2756276--2756343 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 28
2756266 TTTTGAAAAT
*
2756276 ATTTTG-AAA-ATATATATAATATATAA
1 ATTTTGAAAACATTTATATAATATATAA
*
2756302 ATTTTGAAAACATTTATATATTATAT-A
1 ATTTTGAAAACATTTATATAATATATAA
* *
2756329 GTTTTTAAAACATTT
1 ATTTTGAAAACATTT
2756344 TAAAAACTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 6 0.17
27 17 0.47
28 13 0.36
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (28 bp):
ATTTTGAAAACATTTATATAATATATAA
Found at i:2756439 original size:77 final size:76
Alignment explanation
Indices: 2756303--2756637 Score: 353
Period size: 77 Copynumber: 4.5 Consensus size: 76
2756293 AATATATAAA
* *
2756303 TTTTGAAAACATTTATATATTATATAGTTTTTAAAACA-TTTTAAAAACTTATATAATGTATAGT
1 TTTTGAAAA-A-TTATATAATATATAGTTTTAAAAACATTTTTAAAAACTTATATAATGTATAGT
2756367 TTTTTAAAACATT
64 TTTTTAAAACATT
* *
2756380 TTTTGAAAAATTATATAATATATAGTTTTAAAAATATTTTTAAAAAACTTATATAATGTATAATT
1 TTTTGAAAAATTATATAATATATAGTTTTAAAAACATTTTT-AAAAACTTATATAATGTATAGTT
2756445 TTTTAAAACATTT
65 TTTTAAAACA-TT
* *
2756458 TTTTGAAAAATTATATGATATATAGTTTTAAAAAACATTTTTGAAAAA-TTATATAATATATAG-
1 TTTTGAAAAATTATATAATATATAGTTTT-AAAAACATTTTT-AAAAACTTATATAATGTATAGT
*
2756521 TTTTAAAAACATT
64 TTTTTAAAACATT
* * * **
2756534 TTTT-TAAAACT-TAT-ATA-ATA-TTTTAAAAACA-TTTTGAAAAC-TATATAATAAATAG-TT
1 TTTTGAAAAATTATATAATATATAGTTTTAAAAACATTTTTAAAAACTTATATAATGTATAGTTT
*
2756591 TTGAAAAC-TCT
66 TTTAAAACAT-T
* *
2756602 TTTT--AAAA--GTATAATATATAG-TTTAAAAATATTTTT
1 TTTTGAAAAATTATATAATATATAGTTTTAAAAACATTTTT
2756638 GAAATATATA
Statistics
Matches: 231, Mismatches: 16, Indels: 30
0.83 0.06 0.11
Matches are distributed among these distances:
66 3 0.01
67 8 0.03
68 43 0.19
69 8 0.03
70 7 0.03
71 4 0.02
72 3 0.01
73 3 0.01
74 3 0.01
75 28 0.12
76 11 0.05
77 51 0.22
78 43 0.19
79 16 0.07
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (76 bp):
TTTTGAAAAATTATATAATATATAGTTTTAAAAACATTTTTAAAAACTTATATAATGTATAGTTT
TTTAAAACATT
Found at i:2756520 original size:116 final size:114
Alignment explanation
Indices: 2756330--2756637 Score: 342
Period size: 116 Copynumber: 2.8 Consensus size: 114
2756320 TATTATATAG
* **
2756330 TTTTTAAAACATTTTAAAAACTTATATAATGTATAGTTTTTTAAAACATTTTTTGAAAAATTATA
1 TTTTTAAAACATTTTAAAAACTTATATAATATATAGTTTTAAAAAACATTTTTTGAAAAATTATA
*
2756395 TAATATATAGTTTTAAAAATATTTTTAAAAAACTTATATAATGTATAAT
66 TAATATATAGTTTTAAAAACATTTTTAAAAAACTTATATAATGTATAAT
*
2756444 TTTTTAAAACATTTTTTTGAAAAA-TTATATGATATATAGTTTTAAAAAACA-TTTTTGAAAAAT
1 TTTTTAAAACA---TTTT-AAAAACTTATATAATATATAGTTTTAAAAAACATTTTTTGAAAAAT
**
2756507 TATATAATATATAGTTTTAAAAACATTTTTTTAAAACTTATAT-A---AT-A-
62 TATATAATATATAGTTTTAAAAACATTTTTAAAAAACTTATATAATGTATAAT
* * * * *
2756554 TTTTAAAAACATTTTGAAAAC-TATATAATAAATAGTTTT-GAAAAC-TCTTTTT--AAAA--GT
1 TTTTTAAAACATTTTAAAAACTTATATAATATATAGTTTTAAAAAACAT-TTTTTGAAAAATTAT
*
2756612 ATAATATATAG-TTTAAAAATATTTTT
65 ATAATATATAGTTTTAAAAACATTTTT
2756638 GAAATATATA
Statistics
Matches: 173, Mismatches: 14, Indels: 27
0.81 0.07 0.13
Matches are distributed among these distances:
101 14 0.08
102 12 0.07
104 4 0.02
105 5 0.03
106 25 0.14
107 4 0.02
110 10 0.06
111 1 0.01
112 2 0.01
114 11 0.06
115 1 0.01
116 52 0.30
117 27 0.16
118 5 0.03
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (114 bp):
TTTTTAAAACATTTTAAAAACTTATATAATATATAGTTTTAAAAAACATTTTTTGAAAAATTATA
TAATATATAGTTTTAAAAACATTTTTAAAAAACTTATATAATGTATAAT
Found at i:2756681 original size:20 final size:20
Alignment explanation
Indices: 2756643--2756714 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
2756633 TTTTTGAAAT
*
2756643 ATATATATTATATAGTTTATATC
1 ATAT-TATTAT-TA-TTTATTTC
*
2756666 ATATTATTATTATTTATTTT
1 ATATTATTATTATTTATTTC
*
2756686 ATTTTATT-TTATTTCATTTC
1 ATATTATTATTATTT-ATTTC
*
2756706 ATTTTATTA
1 ATATTATTA
2756715 ATTTAATTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
19 6 0.14
20 25 0.58
21 2 0.05
22 6 0.14
23 4 0.09
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (20 bp):
ATATTATTATTATTTATTTC
Found at i:2756682 original size:10 final size:9
Alignment explanation
Indices: 2756669--2756733 Score: 51
Period size: 10 Copynumber: 6.8 Consensus size: 9
2756659 TTATATCATA
2756669 TTATTATTAT
1 TTATT-TTAT
2756679 TTATTTTATT
1 TTATTTTA-T
2756689 TTATTTTAT
1 TTATTTTAT
*
2756698 TTCATTTCAT
1 TT-ATTTTAT
*
2756708 TT-TATTAAT
1 TTAT-TTTAT
*
2756717 TTAATTTAAT
1 TT-ATTTTAT
2756727 TTATTTT
1 TTATTTT
2756734 GTTTTGTGAT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
8 1 0.02
9 16 0.34
10 29 0.62
11 1 0.02
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (9 bp):
TTATTTTAT
Found at i:2756686 original size:5 final size:5
Alignment explanation
Indices: 2756669--2756713 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
2756659 TTATATCATA
* *
2756669 TTATT ATTA-T TTATT TTATT TTATT TTATT TCATT TCATT TTATT
1 TTATT -TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT
2756714 AATTTAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
4 3 0.08
5 30 0.83
6 3 0.08
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (5 bp):
TTATT
Found at i:2756772 original size:15 final size:15
Alignment explanation
Indices: 2756752--2756782 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
2756742 ATCCATGTCC
2756752 AAAGATAAGTCCAAG
1 AAAGATAAGTCCAAG
2756767 AAAGATAAGTCCAAG
1 AAAGATAAGTCCAAG
2756782 A
1 A
2756783 GAGCCAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.19, T:0.13
Consensus pattern (15 bp):
AAAGATAAGTCCAAG
Found at i:2757989 original size:27 final size:27
Alignment explanation
Indices: 2757952--2758013 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
2757942 CAAAGTTAAC
* *
2757952 ATTTTTATATTTTTATTCATTTTATTTTT
1 ATTTTTAT-TCTTTATT-ATTTTATTATT
* *
2757981 ATTTTTATTCTTTGTTATTTTGTTATT
1 ATTTTTATTCTTTATTATTTTATTATT
2758008 ATTTTT
1 ATTTTT
2758014 TAATTGTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 15 0.52
28 6 0.21
29 8 0.28
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (27 bp):
ATTTTTATTCTTTATTATTTTATTATT
Found at i:2758054 original size:27 final size:26
Alignment explanation
Indices: 2758024--2758076 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
2758014 TAATTGTTTA
*
2758024 ATATATTTTTTATCTATATTTATATTT
1 ATATATTTTCTATCTAT-TTTATATTT
* *
2758051 ATATATTTTCTATTTATTTTCTATTT
1 ATATATTTTCTATCTATTTTATATTT
2758077 CTCTTTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (26 bp):
ATATATTTTCTATCTATTTTATATTT
Found at i:2758297 original size:7 final size:6
Alignment explanation
Indices: 2758270--2758300 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
2758260 TCGAATCAAG
2758270 TAATTT TAATTT TAATTT TAATTTT TAATTT
1 TAATTT TAATTT TAATTT TAA-TTT TAATTT
2758301 ATGCAATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TAATTT
Found at i:2761145 original size:31 final size:28
Alignment explanation
Indices: 2761100--2761156 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 28
2761090 TGAGGCGTCT
*
2761100 TGTTTGAATTTGTTTTTTTGAACTTTCTCA
1 TGTTTGAACTTG--TTTTTGAACTTTCTCA
2761130 TGTTTGGAACTTGTTTTTGAACTTTCT
1 TGTTT-GAACTTGTTTTTGAACTTTCT
2761157 TTGGATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 14 0.56
30 5 0.20
31 6 0.24
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.58
Consensus pattern (28 bp):
TGTTTGAACTTGTTTTTGAACTTTCTCA
Found at i:2763329 original size:165 final size:164
Alignment explanation
Indices: 2763039--2764229 Score: 961
Period size: 165 Copynumber: 7.2 Consensus size: 164
2763029 TCTATCAGCC
* * * * *
2763039 AAGACCTTCGAGTTCGAATACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGCTAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* *
2763104 AAGGGCTATCT-CCACCAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCA
66 AAGGGCTATCTGCCA--AAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTTGCA
* * * *
2763168 GCTTAACTTAAGTCGATAATGGTTATCTGCCAACTA
129 GCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
* * * * *
2763204 AAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATTATTTGTAGCATAACTTAAATCGAT
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * * ** * * * * *
2763269 AAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACATTCAGCTTCGAGGGTAAATCATTTACAG
66 AAGGGCTATCTGCCAAAGACCTTCGAGTTTGACTACGCTCAGC-TCCAAGGCATATCATTTGCAG
* * * * * *
2763334 CATAACTCAAGGCTAGAAGGGTTATTTGTCACCAA
130 CATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
* * * *
2763369 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCATCATAACTTAAGTCAAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * * *
2763434 AAGGGTTATCTGCCAACCAAAGTCCTTCGAGTTTGACTACGCTCAGCTCCAAGGTACATCATTTG
66 AAGGGCTATCTG----CCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTTG
* * * *
2763499 TAGCATAGCTTATGTCGAGAAGGGCTATCTG-C--C-A
127 CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
* * *** * * * * * * *
2763533 AAGACCCTCGAGTTCGATTATATTCAGCTTCGAGGGCAAATCATTTACAGCATAACTCAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * * * *
2763598 GAAGGGTTATCTGTCACCAAAATAACTTCGAGTTTGACTATGCTCATCTCCAAGGCATATCATTT
65 GAAGGGCTATCTG---CC-AAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTT
*
2763663 GCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCA
126 GCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
* * * *
2763702 AAGACCTTCGAGTTCGACTACGCTCAGGTCCAAGGCGCATCATTTGTAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * * * * *
2763767 AAGGGCTATCTGCCAAAGACCCTCGAGTTTGATTA-GACTAAGCTTCGAGGGCATATCATTTACA
66 AAGGGCTATCTGCCAAAGACCTTCGAGTTTGACTACG-CTCAGC-TCCAAGGCATATCATTTGCA
* * * * *
2763831 GTATAACTCAA-T-GATAGAAGAGTTATCTGTCACCAA
129 GCATAACTTAAGTCG--AGAAGGGTTATCTGCCAACAA
* * * *
2763867 AAGACCTTCAAGTTCGACTACGCTCATCTCCAAGGCATATCATTTACAGCATAACTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * * * * **
2763932 AAGGGTTATCTGCCAACCAAAGACCTTCGAGCTCGACTACGCTCAACTCCAAGACGCATCATTTG
66 AAGGGCTATCTG----CCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTTG
* * *
2763997 CAGCATAACTTAAGTCAAGAAGGGCTATCT----ACCA
127 CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
* * * ** * ** * * * *
2764031 AAGACCCTT-AAGTTTGATTATACTCATCTTTGAGGGCACATCATTTACAGTATAA-TTCAAGGC
1 AAGA-CCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTT-AAGTC
* * * * * ** *
2764094 TAAAAGGGTTATCTGTCACAAAAAAACCTTCGAGTTCGACTAAACTCAGCTCCAAGGCACATCAT
63 GAGAAGGGCTATCTG-C-C--AAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCAT
* * * * * **
2764159 TTGCAACATAGCTTAAGTCGAGAAAGGCTATATGCCAACCG
124 TTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
* *
2764200 AAGACCTTCGAGTTCGATTACACTCAGCTC
1 AAGACCTTCGAGTTCGACTACGCTCAGCTC
2764230 GATGACACCT
Statistics
Matches: 816, Mismatches: 176, Indels: 65
0.77 0.17 0.06
Matches are distributed among these distances:
162 1 0.00
163 3 0.00
164 94 0.12
165 503 0.62
166 4 0.00
167 1 0.00
168 115 0.14
169 94 0.12
170 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (164 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
AAGGGCTATCTGCCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTTGCAGC
ATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
Found at i:2763524 original size:249 final size:249
Alignment explanation
Indices: 2763030--2764229 Score: 1627
Period size: 249 Copynumber: 4.8 Consensus size: 249
2763020 CAAGGGTTGT
* * * ** * * * * *
2763030 CTATCAGCC-AAGACCTTCGAGTTCGAATACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAG
1 CTATCTGCCAAAGACCCTCGAGTTCGATTATACTCAGCTTCGAGGGCAAATCATTTACAGCATAA
* * *
2763093 CTCAAGGCTAGAAGGGCTATCT-CCACC--AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGG
66 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* * * *
2763155 CATATCATTTGCAGCTTAACTTAAGTCGATAATGGTTATCTGCCAACTAAAGACCTTCGAGTTCG
131 CATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCG
* * * *
2763220 ACTATGCTCAGCTCCAAGGCACATTATTTGTAGCATAACTTAAATCGATAAGGG
196 ACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAACTTAAGTCGAGAAGGG
* * *
2763274 CTATCTGCCAAAGACCCTCGAGTTCGATTACATTCAGCTTCGAGGGTAAATCATTTACAGCATAA
1 CTATCTGCCAAAGACCCTCGAGTTCGATTATACTCAGCTTCGAGGGCAAATCATTTACAGCATAA
* *
2763339 CTCAAGGCTAGAAGGGTTATTTGTCACCAAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGG
66 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* * * *
2763404 CATATCATTTGCATCATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAGTCCTTCGAGTTTG
131 CATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCG
* * *
2763469 ACTACGCTCAGCTCCAAGGTACATCATTTGTAGCATAGCTTATGTCGAGAAGGG
196 ACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAACTTAAGTCGAGAAGGG
*
2763523 CTATCTGCCAAAGACCCTCGAGTTCGATTATATTCAGCTTCGAGGGCAAATCATTTACAGCATAA
1 CTATCTGCCAAAGACCCTCGAGTTCGATTATACTCAGCTTCGAGGGCAAATCATTTACAGCATAA
* * * * *
2763588 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAATAACTTCGAGTTTGACTATGCTCATCTCCAAGG
66 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
2763653 CATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCG
131 CATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCG
* * *
2763718 ACTACGCTCAGGTCCAAGGCGCATCATTTGTAGCATAGCTTAAGTCGAGAAGGG
196 ACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAACTTAAGTCGAGAAGGG
* * * * *
2763772 CTATCTGCCAAAGACCCTCGAGTTTGATTAGACTAAGCTTCGAGGGCATATCATTTACAGTATAA
1 CTATCTGCCAAAGACCCTCGAGTTCGATTATACTCAGCTTCGAGGGCAAATCATTTACAGCATAA
* * * * *
2763837 CTCAATGATAGAAGAGTTATCTGTCACCAAAAGACCTTCAAGTTCGACTACGCTCATCTCCAAGG
66 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* *
2763902 CATATCATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGCTCG
131 CATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCG
* * * * *
2763967 ACTACGCTCAACTCCAAGACGCATCATTTGCAGCATAACTTAAGTCAAGAAGGG
196 ACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAACTTAAGTCGAGAAGGG
* ** * * * * *
2764021 CTATCTACCAAAGACCCTTAAGTTTGATTATACTCATCTTTGAGGGCACATCATTTACAGTATAA
1 CTATCTGCCAAAGACCCTCGAGTTCGATTATACTCAGCTTCGAGGGCAAATCATTTACAGCATAA
* * * * **
2764086 TTCAAGGCTAAAAGGGTTATCTGTCACAAAAAAACCTTCGAGTTCGACTAAACTCAGCTCCAAGG
66 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* * * * * * *
2764151 CACATCATTTGCAACATAGCTTAAGTCGAGAAAGGCTATATGCCAACCGAAGACCTTCGAGTTCG
131 CATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCG
* *
2764216 ATTACACTCAGCTC
196 ACTACGCTCAGCTC
2764230 GATGACACCT
Statistics
Matches: 852, Mismatches: 99, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
244 8 0.01
245 24 0.03
246 40 0.05
247 4 0.00
249 776 0.91
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (249 bp):
CTATCTGCCAAAGACCCTCGAGTTCGATTATACTCAGCTTCGAGGGCAAATCATTTACAGCATAA
CTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
CATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCG
ACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAACTTAAGTCGAGAAGGG
Found at i:2764986 original size:74 final size:73
Alignment explanation
Indices: 2764846--2765243 Score: 382
Period size: 74 Copynumber: 5.5 Consensus size: 73
2764836 CAGAAAACGA
* * * *
2764846 TTTTTGCAAATTTATATATTATATAGTTTTTGAAAATATTTTTAAAA-TATATATAATATATAAG
1 TTTTTGAAAAATTATATATTATATAGTTTTT-AAAAAATTTTAAAAACT-TATATAATATAT-AG
2764910 TTTTAAAA-AT
63 TTTTAAAACAT
* * *
2764920 ATTTTGAAAACATTTATATATTATATAGTTTTTAAAACATTTTAAAAACTTATATAATGTATAGT
1 TTTTTGAAAA-A-TTATATATTATATAGTTTTTAAAAAATTTTAAAAACTTATATAATATATAG-
2764985 TTTTTAAAACAT
63 -TTTTAAAACAT
** * *
2764997 TTTTTGAAAAATTATATAATT-TATAG-TTTTAAAAAAAATTAAAAACTTATATAATGTATAATT
1 TTTTTGAAAAATTATAT-ATTATATAGTTTTTAAAAAATTTTAAAAACTTATATAATATAT-AGT
2765060 TTTAAAACAT
64 TTTAAAACAT
* * * *
2765070 TTTTTGAAAAATTATA-AGATATATAGTTTTAAAAAAAATTTAAAAAATTATATAATATATAGTT
1 TTTTTGAAAAATTATATA-TTATATAGTTTTTAAAAAATTTTAAAAACTTATATAATATATAGTT
2765134 TTAAAAACAT
65 TT-AAAACAT
* * *
2765144 TTTTTG-AAAACT-TATA-TA-ATA-TTTTTAAAACATTTTGAAAAC-TATATAATATATAGTTT
1 TTTTTGAAAAATTATATATTATATAGTTTTTAAAAAATTTTAAAAACTTATATAATATATAGTTT
2765203 TGAAAAC-T
66 T-AAAACAT
*
2765211 CTTTTT--AAAAGTATA-A-TATATAG--TTTAAAAAAT
1 -TTTTTGAAAAATTATATATTATATAGTTTTTAAAAAAT
2765244 ATATTTTTGA
Statistics
Matches: 281, Mismatches: 26, Indels: 41
0.81 0.07 0.12
Matches are distributed among these distances:
67 18 0.06
68 33 0.12
69 16 0.06
70 3 0.01
71 3 0.01
72 3 0.01
73 43 0.15
74 82 0.29
75 36 0.13
76 33 0.12
77 11 0.04
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.45
Consensus pattern (73 bp):
TTTTTGAAAAATTATATATTATATAGTTTTTAAAAAATTTTAAAAACTTATATAATATATAGTTT
TAAAACAT
Found at i:2765231 original size:34 final size:33
Alignment explanation
Indices: 2764859--2765274 Score: 142
Period size: 38 Copynumber: 11.5 Consensus size: 33
2764849 TTGCAAATTT
* *
2764859 ATATATTATATAGTTTTTGAAAATA-TTTTTAAAATA
1 ATATAATATATAG-TTTT-AAAA-ACTTTTTTAAA-A
*
2764895 TATATAATATATAAGTTTTAAAAA-TATTTTGAAAA
1 -ATATAATATAT-AGTTTTAAAAACT-TTTTTAAAA
* * *
2764930 CATTTATATATTATATAGTTTTTAAAACATTTTAAAAA
1 -A--TATA-A-TATATAGTTTTAAAAACTTTTTTAAAA
* *
2764968 CTTATATAATGTATAGTTTTTTAAAACATTTTTTGAAAAA
1 ---ATATAATATATAG-TTTTAAAAAC-TTTTTT--AAAA
* *** *
2765008 TTATATAATTTATAGTTTTAAAAA-AAATTAAAAA
1 --ATATAATATATAGTTTTAAAAACTTTTTTAAAA
* * *
2765042 CTTATATAATGTATAATTTTTAAAACATTTTTTGAAAA
1 ---ATATAATATATAGTTTTAAAAAC-TTTTTT-AAAA
** **
2765080 ATTATAAGATATATAGTTTTAAAAAAAATTTAAAAAA
1 A-TAT-A-ATATATAGTTTT-AAAAACTTTTTTAAAA
2765117 TTATATAATATATAGTTTTAAAAACATTTTTTGAAAA
1 --ATATAATATATAGTTTTAAAAAC-TTTTTT-AAAA
* * * *
2765154 CT-T-ATATAATA-TTTTTAAAACATTTTGAAAA
1 ATATAATAT-ATAGTTTTAAAAACTTTTTTAAAA
*
2765185 CTATATAATATATAGTTTTGAAAACTCTTTTTAAAA
1 --ATATAATATATAGTTTTAAAAACT-TTTTTAAAA
* * *
2765221 GTATAATATATAGTTTAAAAAATATATTTTTGAAATA
1 ATATAATATATAGTTTTAAAAA-CT-TTTTT-AAA-A
*
2765258 TATATATTATATAGTTT
1 -ATATAATATATAGTTT
2765275 ATATCATATT
Statistics
Matches: 294, Mismatches: 49, Indels: 71
0.71 0.12 0.17
Matches are distributed among these distances:
31 4 0.01
32 4 0.01
33 14 0.05
34 31 0.11
35 51 0.17
36 48 0.16
37 42 0.14
38 71 0.24
39 24 0.08
40 5 0.02
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (33 bp):
ATATAATATATAGTTTTAAAAACTTTTTTAAAA
Found at i:2765290 original size:25 final size:25
Alignment explanation
Indices: 2765262--2765316 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
2765252 GAAATATATA
2765262 TATTATATAGTTTATATCATATTAT
1 TATTATATAGTTTATATCATATTAT
* * *
2765287 TATTATTTATTTTATTTCATATTAT
1 TATTATATAGTTTATATCATATTAT
2765312 T-TTAT
1 TATTAT
2765317 TAATTTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (25 bp):
TATTATATAGTTTATATCATATTAT
Found at i:2766573 original size:14 final size:14
Alignment explanation
Indices: 2766554--2766651 Score: 54
Period size: 14 Copynumber: 6.3 Consensus size: 14
2766544 CAAAGTTAAC
2766554 ATTTTTATATTTTT
1 ATTTTTATATTTTT
* *
2766568 ATTTTTTTCTTTGTT
1 ATTTTTATATTT-TT
2766583 ATTTTGTTATTATTTTT
1 A-TTT-TTA-TATTTTT
2766600 ATTTGTTTAATATATTTT
1 A-TT-TTT-ATAT-TTTT
*
2766618 -TTTATCTATATTTAT
1 ATTT-T-TATATTTTT
*
2766633 ATTTATATATTTTCT
1 ATTTTTATATTTT-T
2766648 ATTT
1 ATTT
2766652 CTCTTTTGAT
Statistics
Matches: 66, Mismatches: 7, Indels: 21
0.70 0.07 0.22
Matches are distributed among these distances:
14 17 0.26
15 12 0.18
16 13 0.20
17 14 0.21
18 10 0.15
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.72
Consensus pattern (14 bp):
ATTTTTATATTTTT
Found at i:2769200 original size:12 final size:12
Alignment explanation
Indices: 2769183--2769215 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
2769173 TCTTAAATGT
2769183 TGCTTCTCTCGA
1 TGCTTCTCTCGA
*
2769195 TGCTTCTCTCGT
1 TGCTTCTCTCGA
2769207 TGC-TCTCTC
1 TGCTTCTCTC
2769216 TACTTCTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.03, C:0.36, G:0.15, T:0.45
Consensus pattern (12 bp):
TGCTTCTCTCGA
Found at i:2774760 original size:14 final size:14
Alignment explanation
Indices: 2774741--2774767 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2774731 TACTATTAGA
2774741 TTAAAATTATATCT
1 TTAAAATTATATCT
2774755 TTAAAATTATATC
1 TTAAAATTATATC
2774768 AAGTGTGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
TTAAAATTATATCT
Found at i:2775504 original size:15 final size:15
Alignment explanation
Indices: 2775484--2775524 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
2775474 TTGAATTGCT
*
2775484 ATTCTTTTCCACCTA
1 ATTCTTTACCACCTA
2775499 ATTCTTTACCACCTA
1 ATTCTTTACCACCTA
2775514 ATTCTTTACCA
1 ATTCTTTACCA
2775525 AACGAAGGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (15 bp):
ATTCTTTACCACCTA
Found at i:2785257 original size:19 final size:22
Alignment explanation
Indices: 2785221--2785265 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
2785211 TAATTTTTCA
2785221 TAATAATAATTATAATTATTAT
1 TAATAATAATTATAATTATTAT
*
2785243 TAAT-ATAATATATTATTATTAT
1 TAATAATAAT-TATAATTATTAT
2785265 T
1 T
2785266 TATTATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TAATAATAATTATAATTATTAT
Found at i:2785282 original size:2 final size:2
Alignment explanation
Indices: 2785275--2785314 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
2785265 TTATTATTAA
2785275 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2785315 TACAAATTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2786731 original size:20 final size:20
Alignment explanation
Indices: 2786664--2786731 Score: 50
Period size: 20 Copynumber: 3.2 Consensus size: 20
2786654 TAATTTACAT
*
2786664 TTTTATTATTTATTTAGTCAT-
1 TTTTATTATTT-TTTAAT-ATA
*
2786685 TGTTTAATTATATTTTAACT-TA
1 T-TTT-ATTATTTTTTAA-TATA
*
2786707 ATTTATTATTTTTTAATATA
1 TTTTATTATTTTTTAATATA
2786727 TTTTA
1 TTTTA
2786732 AATTATTACT
Statistics
Matches: 37, Mismatches: 5, Indels: 11
0.70 0.09 0.21
Matches are distributed among these distances:
19 1 0.03
20 17 0.46
21 5 0.14
22 7 0.19
23 7 0.19
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (20 bp):
TTTTATTATTTTTTAATATA
Found at i:2786785 original size:35 final size:33
Alignment explanation
Indices: 2786708--2786786 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 33
2786698 TTTAACTTAA
*
2786708 TTTATTATTTTTTAATATATTTTAAATTATTAC
1 TTTATTATTTTTTAATATATTATAAATTATTAC
* *
2786741 TTTAATTATTGTTTTACTATATTATAAA-TATATAT
1 TTT-ATTATT-TTTTAATATATTATAAATTAT-TAC
2786776 TTTATTTATTT
1 TTTA-TTATTT
2786787 AATAATGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
33 3 0.08
34 11 0.28
35 25 0.64
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (33 bp):
TTTATTATTTTTTAATATATTATAAATTATTAC
Found at i:2789064 original size:189 final size:187
Alignment explanation
Indices: 2788722--2789098 Score: 704
Period size: 189 Copynumber: 2.0 Consensus size: 187
2788712 TGCTCCCGAT
2788722 ATCTAAACTCAGGTTCAATTCAAGACAAAAGGTGGTTCTCATCTTGATACTATCCCCATATCATA
1 ATCTAAACTCAGGTTCAATTCAAGACAAAAGGTGGTTCTCATCTTGATACTATCCCCATATCATA
2788787 TAAAGAGTTTAGAGAGCTACTTGAACACGAGAAGTGGATCCATATTATATAAAACCGTTTTCAAC
66 TAAAGAGTTTAGAGAGCTACTTGAACACGAGAAGTGGATCCATATTATATAAAACCGTTTTCAAC
2788852 CTCCGTATCCAAATTGGGATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTC
131 CTCCGTATCCAAATTGGGATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTC
2788909 ATCTAAAACTCAGGTTCAATTCAAGACAAAAGGTGGTTCTCATCTTGATACTATCCCC-TATC-T
1 ATCT-AAACTCAGGTTCAATTCAAGACAAAAGGTGGTTCTCATCTTGATACTATCCCCATATCAT
2788972 ATAAAGAGTTGTAGAGAAGCTACTTGAAGCACGAGAAGTGGATCCATATTATATAAAACCGTTTT
65 ATAAAGAGTT-TAGAG-AGCTACTTGAA-CACGAGAAGTGGATCCATATTATATAAAACCGTTTT
2789037 CAACCTCCGTATCCAAATTGGGATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTC
127 CAACCTCCGTATCCAAATTGGGATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTC
2789098 A
1 A
2789099 AGGTATCCAA
Statistics
Matches: 186, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
186 11 0.06
187 13 0.07
188 64 0.34
189 98 0.53
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (187 bp):
ATCTAAACTCAGGTTCAATTCAAGACAAAAGGTGGTTCTCATCTTGATACTATCCCCATATCATA
TAAAGAGTTTAGAGAGCTACTTGAACACGAGAAGTGGATCCATATTATATAAAACCGTTTTCAAC
CTCCGTATCCAAATTGGGATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTC
Found at i:2789131 original size:56 final size:56
Alignment explanation
Indices: 2789045--2789157 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
2789035 TTCAACCTCC
2789045 GTATCCAAATTGGGATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTCAAG
1 GTATCCAAATTGGGATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTCAAG
*
2789101 GTATCCAAATTGGTATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTCAAG
1 GTATCCAAATTGGGATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTCAAG
2789157 G
1 G
2789158 ACATACCGTC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (56 bp):
GTATCCAAATTGGGATGACATCAACGTTCATTGTGAATATCATTCCGGAGCTCAAG
Found at i:2794082 original size:93 final size:93
Alignment explanation
Indices: 2793923--2794104 Score: 346
Period size: 93 Copynumber: 2.0 Consensus size: 93
2793913 AATAAGAAGA
*
2793923 CTCAATAGCATCTTATGGAAGTGTTCTTTGAGTTATCTGATTTGATTTGGTATGAACTCCAAAAT
1 CTCAATAGCATCTTATGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTATGAACTCCAAAAT
2793988 CAATCATTGGATTTGAAAGATGAATAGG
66 CAATCATTGGATTTGAAAGATGAATAGG
*
2794016 CTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTATGAACTCCAAAAT
1 CTCAATAGCATCTTATGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTATGAACTCCAAAAT
2794081 CAATCATTGGATTTGAAAGATGAA
66 CAATCATTGGATTTGAAAGATGAA
2794105 ATTTGCTCAT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 87 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (93 bp):
CTCAATAGCATCTTATGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTATGAACTCCAAAAT
CAATCATTGGATTTGAAAGATGAATAGG
Found at i:2794215 original size:115 final size:115
Alignment explanation
Indices: 2794013--2794219 Score: 324
Period size: 115 Copynumber: 1.8 Consensus size: 115
2794003 AAAGATGAAT
* * * *
2794013 AGGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTATGAACTCCAA
1 AGGCTCAATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTCGGTAGGAACCCCAA
* * *
2794078 AATCAATCATTGGATTTGAAAGATGAAATTTGCTCATAGTAGAAATAAGG
66 AACCAATCATTGGAATTAAAAGATGAAATTTGCTCATAGTAGAAATAAGG
* *
2794128 AGGCTCAATAGAATCTTTTGGAAGTGTTCTTTGAGTTATCTGATCTGATTCGGTAGGAACCCCAG
1 AGGCTCAATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTCGGTAGGAACCCCAA
*
2794193 AACCGATCATTGGAATTAAAAGATGAA
66 AACCAATCATTGGAATTAAAAGATGAA
2794220 CTGCATGATC
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 82 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (115 bp):
AGGCTCAATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTCGGTAGGAACCCCAA
AACCAATCATTGGAATTAAAAGATGAAATTTGCTCATAGTAGAAATAAGG
Found at i:2796238 original size:54 final size:54
Alignment explanation
Indices: 2796156--2796315 Score: 203
Period size: 59 Copynumber: 2.9 Consensus size: 54
2796146 GAAATCTTGG
* *
2796156 CAGAAGCCATAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGAA
1 CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCCGAA
* * *
2796210 CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGCTTCATTGACCAATAATCCGAG
1 CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATG-TT--TT-ACGAA-CATCCGAA
* * *
2796269 CAGAAACCACAGGAAAAGATGAATGTATTGTCAAATGTTTTACGAAC
1 CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAAC
2796316 CAGTGATTAT
Statistics
Matches: 91, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
54 36 0.40
55 6 0.07
56 2 0.02
57 2 0.02
58 6 0.07
59 39 0.43
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.24
Consensus pattern (54 bp):
CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCCGAA
Found at i:2796727 original size:22 final size:23
Alignment explanation
Indices: 2796676--2796731 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
2796666 ATCTACACTC
2796676 TTCAAAGATGATAGATTCTCTTT
1 TTCAAAGATGATAGATTCTCTTT
*
2796699 TTTAAAGATGATAGATTCTC-TT
1 TTCAAAGATGATAGATTCTCTTT
2796721 TTCAAAGATGA
1 TTCAAAGATGA
2796732 AAACTCTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 12 0.39
23 19 0.61
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (23 bp):
TTCAAAGATGATAGATTCTCTTT
Found at i:2797507 original size:76 final size:76
Alignment explanation
Indices: 2797407--2797943 Score: 959
Period size: 76 Copynumber: 7.1 Consensus size: 76
2797397 ACTATTTCCC
2797407 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
2797472 AAGCCTTCGGG
66 AAGCCTTCGGG
*
2797483 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
2797548 AAGCCTTCGGG
66 AAGCCTTCGGG
2797559 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
2797624 AAGCCTTCGGG
66 AAGCCTTCGGG
* *
2797635 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAACCTTCGGGAGATTTTTGATGTTTTCA
1 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
2797700 AAGCCTTCGGG
66 AAGCCTTCGGG
2797711 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
2797776 AAGCCTTCGGG
66 AAGCCTTCGGG
*
2797787 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-
*
2797852 AAAACCTTCGGG
65 AAAGCCTTCGGG
* * * *
2797864 TCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAACCTTCGGGAGCTTTTTGATGTTTTTA
1 TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
*
2797929 AA-CCCTCGGGG
66 AAGCCTTC-GGG
2797940 TCAT
1 TCAT
2797944 TCATAAGACC
Statistics
Matches: 447, Mismatches: 12, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
75 4 0.01
76 371 0.83
77 72 0.16
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (76 bp):
TCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
AAGCCTTCGGG
Found at i:2798111 original size:3 final size:3
Alignment explanation
Indices: 2798099--2798149 Score: 57
Period size: 3 Copynumber: 16.3 Consensus size: 3
2798089 CATAATAATA
* * *
2798099 ATT ATA ATT ATT ATT AAT ATA ATAT ATT ATT ATT ATT ATT ATTT ATT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT A-TT ATT
2798146 ATT A
1 ATT A
2798150 AATATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 35 0.88
4 5 0.12
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:2798116 original size:16 final size:16
Alignment explanation
Indices: 2798097--2798146 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
2798087 TTCATAATAA
2798097 TAATTATAATTATTAT
1 TAATTATAATTATTAT
2798113 TAA-TATAATATATTAT
1 TAATTATAAT-TATTAT
*
2798129 T-ATTATTATTATTTAT
1 TAATTATAATTA-TTAT
2798145 TA
1 TA
2798147 TTAAATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 9 0.31
16 20 0.69
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTATAATTATTAT
Found at i:2798116 original size:22 final size:22
Alignment explanation
Indices: 2798091--2798136 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
2798081 TAATTTTTCA
2798091 TAATAATAAT-TATAATTATTAT
1 TAAT-ATAATATATAATTATTAT
*
2798113 TAATATAATATATTATTATTAT
1 TAATATAATATATAATTATTAT
2798135 TA
1 TA
2798137 TTATTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TAATATAATATATAATTATTAT
Found at i:2798147 original size:16 final size:18
Alignment explanation
Indices: 2798105--2798160 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
2798095 AATAATTATA
2798105 ATTATTATTAATATAATAT
1 ATTATTATT-ATATAATAT
*
2798124 ATTATTATTAT-TATTAT
1 ATTATTATTATATAATAT
*
2798141 -TTATTATTAAATATATAT
1 ATTATTATTATATA-ATAT
2798159 AT
1 AT
2798161 ATATATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 9 0.29
17 7 0.23
18 5 0.16
19 10 0.32
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTATTATTATATAATAT
Found at i:2801163 original size:43 final size:43
Alignment explanation
Indices: 2801103--2801454 Score: 333
Period size: 43 Copynumber: 8.2 Consensus size: 43
2801093 TTTGGAATAA
* *
2801103 CCGCAAAAGGTCGATATCTATTGCGGTGTTTTTGGAACAAACG
1 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACG
* * * * *
2801146 CCACAAAAGGTCGATATCTATAGCGACATTTTTGGAATAAATG
1 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACG
* * *
2801189 TCGCAAAAAGTCAATATCTATAGCGGCG-TTTTGGAACAAACG
1 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACG
2801231 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACG
1 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACG
* * * * * **
2801274 CCGCAAAATGTCGAGATATATAGCGGCATTTTTGGAAAAAATA
1 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACG
* * * ** *
2801317 TCGCAAAATGTC-AGATCTATAGCGGC-TTTTTCAAAATAAACG
1 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTT-GGAACAAACG
*
2801359 CCGCAAAAGGTCAGAT-T-TATAGTGGCGGTTTTT-GATACAAACG
1 CCGCAAAAGGTC-GATATCTATAGCGGC-GTTTTTGGA-ACAAACG
* * * * *
2801402 CCGCAAAAGG--GAAGATTTATACCGACGTTTTTTGATACAAACG
1 CCGCAAAAGGTCG-ATATCTATAGCGGCGTTTTTGGA-ACAAACG
2801445 CCGCAAAAGG
1 CCGCAAAAGG
2801455 GCTCATGATA
Statistics
Matches: 256, Mismatches: 42, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
40 1 0.00
41 6 0.02
42 81 0.32
43 162 0.63
44 6 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (43 bp):
CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACG
Found at i:2801240 original size:85 final size:85
Alignment explanation
Indices: 2801091--2801411 Score: 307
Period size: 85 Copynumber: 3.8 Consensus size: 85
2801081 TATCATGTCG
* * * *
2801091 TTTTTGGAAT-AA--CCGCAAAAGGTCGATATCTATTGCGG-TGTTTTTGGAACAAACGCCACAA
1 TTTTTGGAATAAACGCCGCAAAAGGTCAATATCTATAGCGGCAG-TTTTGGAACAAACGCCGCAA
*
2801152 AAGGTCGATATCTATAGCGAC
65 AAGGTCGATATCTATAGCGGC
* * *
2801173 ATTTTTGGAATAAATGTCGCAAAAAGTCAATATCTATAGCGGC-GTTTTGGAACAAACGCCGCAA
1 -TTTTTGGAATAAACGCCGCAAAAGGTCAATATCTATAGCGGCAGTTTTGGAACAAACGCCGCAA
2801237 AAGGTCGATATCTATAGCGGC
65 AAGGTCGATATCTATAGCGGC
* * * * * * * ***
2801258 GTTTTTGGAACAAACGCCGCAAAATGTCGAGATATATAGCGGCATTTTTGGAAAAAATATCGCAA
1 -TTTTTGGAATAAACGCCGCAAAAGGTCAATATCTATAGCGGCAGTTTTGGAACAAACGCCGCAA
* *
2801323 AATGTC-AGATCTATAGCGGC
65 AAGGTCGATATCTATAGCGGC
** * * *
2801343 TTTTTCAAAATAAACGCCGCAAAAGGTCAGAT-T-TATAGTGGCGGTTTTTGATACAAACGCCGC
1 TTTTT-GGAATAAACGCCGCAAAAGGTCA-ATATCTATAGCGGCAGTTTTGGA-ACAAACGCCGC
2801406 AAAAGG
63 AAAAGG
2801412 GAAGATTTAT
Statistics
Matches: 194, Mismatches: 36, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
83 10 0.05
84 21 0.11
85 118 0.61
86 45 0.23
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (85 bp):
TTTTTGGAATAAACGCCGCAAAAGGTCAATATCTATAGCGGCAGTTTTGGAACAAACGCCGCAAA
AGGTCGATATCTATAGCGGC
Found at i:2801266 original size:128 final size:128
Alignment explanation
Indices: 2801103--2801411 Score: 410
Period size: 128 Copynumber: 2.4 Consensus size: 128
2801093 TTTGGAATAA
* * * * *
2801103 CCGCAAAAGGTCGATATCTATTGCGGTGTTTTTGGAACAAACGCCACAAAAGGTCGATATCTATA
1 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCGAGATATATA
* * * **
2801168 GCGACATTTTTGGAATAAATGTCGCAAAAAGTCAATATCTATAGCGGCGTTTT-GGAACAAACG
66 GCGACATTTTTGGAAAAAATATCGCAAAAAGTC-AGATCTATAGCGGCGTTTTCAAAACAAACG
*
2801231 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAATGTCGAGATATATA
1 CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCGAGATATATA
* * * *
2801296 GCGGCATTTTTGGAAAAAATATCGCAAAATGTCAGATCTATAGCGGCTTTTTCAAAATAAACG
66 GCGACATTTTTGGAAAAAATATCGCAAAAAGTCAGATCTATAGCGGCGTTTTCAAAACAAACG
*
2801359 CCGCAAAAGGTCAGAT-T-TATAGTGGCGGTTTTT-GATACAAACGCCGCAAAAGG
1 CCGCAAAAGGTC-GATATCTATAGCGGC-GTTTTTGGA-ACAAACGCCGCAAAAGG
2801412 GAAGATTTAT
Statistics
Matches: 160, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
127 27 0.17
128 130 0.81
129 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (128 bp):
CCGCAAAAGGTCGATATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCGAGATATATA
GCGACATTTTTGGAAAAAATATCGCAAAAAGTCAGATCTATAGCGGCGTTTTCAAAACAAACG
Found at i:2804618 original size:17 final size:18
Alignment explanation
Indices: 2804596--2804629 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2804586 TGTTGGGTGT
*
2804596 TGTTGTTGTT-TTTTTTC
1 TGTTGTGGTTGTTTTTTC
2804613 TGTTGTGGTTGTTTTTT
1 TGTTGTGGTTGTTTTTT
2804630 TTCGTTGCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.00, C:0.03, G:0.24, T:0.74
Consensus pattern (18 bp):
TGTTGTGGTTGTTTTTTC
Found at i:2804618 original size:20 final size:20
Alignment explanation
Indices: 2804593--2804636 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
2804583 TGTTGTTGGG
*
2804593 TGTTGTTGTTGTTTTTTTTC
1 TGTTGTGGTTGTTTTTTTTC
2804613 TGTTGTGGTTGTTTTTTTTC
1 TGTTGTGGTTGTTTTTTTTC
2804633 -GTTG
1 TGTTG
2804637 CTCTCTCTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.00, C:0.05, G:0.25, T:0.70
Consensus pattern (20 bp):
TGTTGTGGTTGTTTTTTTTC
Found at i:2805132 original size:3 final size:3
Alignment explanation
Indices: 2805124--2805180 Score: 71
Period size: 3 Copynumber: 18.7 Consensus size: 3
2805114 GGCCTGTTTT
* *
2805124 TAA TAA TAA TAA TAT TAA TAA TAA AAA TATA TAA TAAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TAA TAA
2805170 TAA TAA TAA TA
1 TAA TAA TAA TA
2805181 TAAATAAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 2 0.04
3 39 0.83
4 6 0.13
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:2805144 original size:12 final size:11
Alignment explanation
Indices: 2805126--2805183 Score: 61
Period size: 11 Copynumber: 5.4 Consensus size: 11
2805116 CCTGTTTTTA
2805126 ATAATAATAAT
1 ATAATAATAAT
2805137 ATTAATAATAA-
1 A-TAATAATAAT
2805148 A-AATATATAAT
1 ATAATA-ATAAT
2805159 A-AATAAT-AT
1 ATAATAATAAT
2805168 AATAATAATAAT
1 -ATAATAATAAT
2805180 ATAA
1 ATAA
2805184 ATAAAACTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
9 6 0.15
10 7 0.17
11 17 0.41
12 11 0.27
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:2805187 original size:12 final size:14
Alignment explanation
Indices: 2805124--2805183 Score: 86
Period size: 14 Copynumber: 4.2 Consensus size: 14
2805114 GGCCTGTTTT
2805124 TAATAATAATAATA
1 TAATAATAATAATA
*
2805138 TTAATAATAAAAATA
1 -TAATAATAATAATA
2805153 T-ATAATAAATAATA
1 TAATAAT-AATAATA
2805167 TAATAATAATAATA
1 TAATAATAATAATA
2805181 TAA
1 TAA
2805184 ATAAAACTGG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
13 5 0.12
14 18 0.44
15 18 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TAATAATAATAATA
Found at i:2805713 original size:39 final size:40
Alignment explanation
Indices: 2805636--2805732 Score: 169
Period size: 39 Copynumber: 2.5 Consensus size: 40
2805626 GTTGAACAAA
*
2805636 TTCTTCTCATTATGAATTCCTTCTTTCTTCTTCAGATGAG
1 TTCTTCTCATTATGAACTCCTTCTTTCTTCTTCAGATGAG
*
2805676 TTCTTCTCATTATGAACT-CTTTTTTCTTCTTCAGATGAG
1 TTCTTCTCATTATGAACTCCTTCTTTCTTCTTCAGATGAG
2805715 TTCTTCTCATTATGAACT
1 TTCTTCTCATTATGAACT
2805733 TTCTCTGGAA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
39 38 0.69
40 17 0.31
ACGTcount: A:0.19, C:0.22, G:0.09, T:0.51
Consensus pattern (40 bp):
TTCTTCTCATTATGAACTCCTTCTTTCTTCTTCAGATGAG
Found at i:2805811 original size:152 final size:149
Alignment explanation
Indices: 2805527--2805846 Score: 432
Period size: 152 Copynumber: 2.1 Consensus size: 149
2805517 GCTGAACAAA
* *
2805527 TTCTTCTCATTATGAACTTCTTCTCCTCTTCATATGAGTTCTTCTTATGAACTCTTTCTAGCAAT
1 TTCTTCTCATTATGAACTTCTTCTCCTCTTCAGATGAGTTCTTCTTATGAACTCTTTCTAGCAAA
2805592 ACTGATCCATCGAATGATGAAATCGAGCAAAAAAGTTGAACAAATTCTTCTCATTATGAATTCCT
66 ACTGATCCATCGAATGATGAAATCGAGCAAAAAAGTTGAACAAATTCTTCTCATTATGAATTCCT
*
2805657 TCTTTCTTCTTCAGATGAG
131 TCTTCCTTCTTCAGATGAG
* * *
2805676 TTCTTCTCATTATGAACTCTTTTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACT-TTCTCT-
1 TTCTTCTCATTATGAACT-TCTTCTCCTCTTCAGATGAGTTC-T-TC-TTATGAACTCTT-TCTA
* * * * * *
2805739 GGAAAAGCTGATCCATC-AAGTGATGGATTTGAGC-AAAAGGTTGATCAAATTCTTCTCATTATG
61 GCAAAA-CTGATCCATCGAA-TGATGAAATCGAGCAAAAAAGTTGAACAAATTCTTCTCATTATG
*
2805802 AATTTCTTCTTCCTTCTTCAGATGAG
124 AATTCCTTCTTCCTTCTTCAGATGAG
2805828 TTCTTCTCATTATGAACTT
1 TTCTTCTCATTATGAACTT
2805847 TCTCTGGAAA
Statistics
Matches: 151, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
149 18 0.12
150 19 0.13
151 2 0.01
152 79 0.52
153 33 0.22
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (149 bp):
TTCTTCTCATTATGAACTTCTTCTCCTCTTCAGATGAGTTCTTCTTATGAACTCTTTCTAGCAAA
ACTGATCCATCGAATGATGAAATCGAGCAAAAAAGTTGAACAAATTCTTCTCATTATGAATTCCT
TCTTCCTTCTTCAGATGAG
Found at i:2805972 original size:113 final size:113
Alignment explanation
Indices: 2805677--2805976 Score: 478
Period size: 113 Copynumber: 2.7 Consensus size: 113
2805667 TCAGATGAGT
* *
2805677 TCTTCTCATTATGAAC-TCTTTTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
* * *
2805741 AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGATCAAAT
66 AAATGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAAC
*
2805789 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
*
2805854 AAATGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
66 AAATGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAAC
* * *
2805902 TCTTCTTATTATGAACTTCTTCCTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAC-CTG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT-TTCTCTG
*
2805966 GTAATGCTGAT
65 GAAATGCTGAT
2805977 GACCCGAAGG
Statistics
Matches: 174, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
112 15 0.09
113 157 0.90
114 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (113 bp):
TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
AAATGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAAC
Found at i:2806073 original size:58 final size:58
Alignment explanation
Indices: 2805983--2806098 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
2805973 TGATGACCCG
2805983 AAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGTA
1 AAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGTA
2806041 AAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGTA
1 AAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGTA
2806099 GGACTTACAG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (58 bp):
AAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGTA
Found at i:2806172 original size:76 final size:76
Alignment explanation
Indices: 2806041--2806339 Score: 517
Period size: 76 Copynumber: 3.9 Consensus size: 76
2806031 ATGCACTGTA
* * *
2806041 AAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGTAGGACTTA
1 AAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTA
2806106 CAGATGACCCT
66 CAGATGACCCT
* * * *
2806117 AAGGCTTTGAAAACATCAAAAAGCTTCCGAAGGATTTTTGGAAACATCATGCACTGTAGGAATTA
1 AAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTA
2806182 CAGATGACCCT
66 CAGATGACCCT
* *
2806193 AAGGCTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGGAAACATCATGCACTGCAAGACTTA
1 AAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTA
2806258 CAGATGACCCT
66 CAGATGACCCT
2806269 AAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTA
1 AAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTA
2806334 CAGATG
66 CAGATG
2806340 TGGGAAATAG
Statistics
Matches: 210, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 210 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (76 bp):
AAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTA
CAGATGACCCT
Found at i:2807043 original size:22 final size:22
Alignment explanation
Indices: 2807018--2807070 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
2807008 TAAAGCTTTT
2807018 ATCTTTGAAAAGAGAATCTATC
1 ATCTTTGAAAAGAGAATCTATC
*
2807040 ATCTTTAAAAAGAGAATCTATC
1 ATCTTTGAAAAGAGAATCTATC
2807062 ATCTTTGAA
1 ATCTTTGAA
2807071 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCTTTGAAAAGAGAATCTATC
Found at i:2809898 original size:114 final size:114
Alignment explanation
Indices: 2809568--2809901 Score: 562
Period size: 114 Copynumber: 2.9 Consensus size: 114
2809558 GATTATGCAG
* * * *
2809568 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTTC-TACCGAACCAGACCAGGTAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTGGGG-TTCATACCAAATCAGATCAGATAACTCAAAG
* *
2809632 AACATTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
65 AACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTGCTATGAGCAAA
*
2809682 TTCATCTTTCAAATCCAATGATTAGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAGA
* *
2809747 ACACTTCTAGAAGTTGCTATTGGGTCTCCTTATTTCTGCTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTGCTATGAGCAAA
*
2809796 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAAATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAGA
2809861 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTGCTA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTGCTA
2809902 AAAGAACGTG
Statistics
Matches: 206, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
113 3 0.01
114 203 0.99
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTGCTATGAGCAAA
Found at i:2816741 original size:15 final size:15
Alignment explanation
Indices: 2816721--2816752 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
2816711 AGAATAAATT
2816721 CTCACGAAGACGTCG
1 CTCACGAAGACGTCG
2816736 CTCACGAAGACGTCG
1 CTCACGAAGACGTCG
2816751 CT
1 CT
2816753 TTCACTCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.34, G:0.25, T:0.16
Consensus pattern (15 bp):
CTCACGAAGACGTCG
Found at i:2816914 original size:25 final size:26
Alignment explanation
Indices: 2816872--2816924 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
2816862 TTAATACCTG
*
2816872 AATAAAATAAAATAAAT-ATTAATAA
1 AATAAAATAAAATAAATAAGTAATAA
*
2816897 AATAATATAAAA-ATAATAAGTAATAA
1 AATAAAATAAAATA-AATAAGTAATAA
2816923 AA
1 AA
2816925 AATTTTAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 1 0.04
25 14 0.58
26 9 0.38
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (26 bp):
AATAAAATAAAATAAATAAGTAATAA
Found at i:2817794 original size:22 final size:22
Alignment explanation
Indices: 2817766--2817828 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
2817756 TATATAAAAT
* *
2817766 TAAAATATAAAAAAATAATGAG
1 TAAAATATAAAAAAATAATAAC
*
2817788 TAAAATA-AATAAAATTAA-AAC
1 TAAAATATAA-AAAAATAATAAC
2817809 T-AAATATAAAAAAATAATAA
1 TAAAATATAAAAAAATAATAA
2817829 AAATTTACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 12 0.35
21 8 0.24
22 14 0.41
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (22 bp):
TAAAATATAAAAAAATAATAAC
Found at i:2818640 original size:20 final size:20
Alignment explanation
Indices: 2818617--2818656 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
2818607 TGCTGTTGGG
*
2818617 TGTTGTTGTTGTTTGTTTTC
1 TGTTGTGGTTGTTTGTTTTC
*
2818637 TGTTGTGGTTGTTTTTTTTC
1 TGTTGTGGTTGTTTGTTTTC
2818657 GTTTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.05, G:0.25, T:0.70
Consensus pattern (20 bp):
TGTTGTGGTTGTTTGTTTTC
Found at i:2819165 original size:3 final size:3
Alignment explanation
Indices: 2819157--2819213 Score: 71
Period size: 3 Copynumber: 18.7 Consensus size: 3
2819147 GGCCTGTTTC
* *
2819157 TAA TAA TAA TAA TAT TAA TAA TAA AAA TATA TAA TAAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TAA TAA
2819203 TAA TAA TAA TA
1 TAA TAA TAA TA
2819214 TAAATAAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 2 0.04
3 39 0.83
4 6 0.13
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:2819177 original size:12 final size:11
Alignment explanation
Indices: 2819159--2819216 Score: 61
Period size: 11 Copynumber: 5.4 Consensus size: 11
2819149 CCTGTTTCTA
2819159 ATAATAATAAT
1 ATAATAATAAT
2819170 ATTAATAATAA-
1 A-TAATAATAAT
2819181 A-AATATATAAT
1 ATAATA-ATAAT
2819192 A-AATAAT-AT
1 ATAATAATAAT
2819201 AATAATAATAAT
1 -ATAATAATAAT
2819213 ATAA
1 ATAA
2819217 ATAAAACCGG
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
9 6 0.15
10 7 0.17
11 17 0.41
12 11 0.27
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:2819220 original size:12 final size:14
Alignment explanation
Indices: 2819157--2819216 Score: 86
Period size: 14 Copynumber: 4.2 Consensus size: 14
2819147 GGCCTGTTTC
2819157 TAATAATAATAATA
1 TAATAATAATAATA
*
2819171 TTAATAATAAAAATA
1 -TAATAATAATAATA
2819186 T-ATAATAAATAATA
1 TAATAAT-AATAATA
2819200 TAATAATAATAATA
1 TAATAATAATAATA
2819214 TAA
1 TAA
2819217 ATAAAACCGG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
13 5 0.12
14 18 0.44
15 18 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TAATAATAATAATA
Found at i:2819392 original size:67 final size:67
Alignment explanation
Indices: 2819284--2819415 Score: 264
Period size: 67 Copynumber: 2.0 Consensus size: 67
2819274 CGTACCTAGA
2819284 ATAAACAACCATTAAGAAAATGAAATGCCACTTAGAATATAACCCCTTAACAATTTCAAGAAGTT
1 ATAAACAACCATTAAGAAAATGAAATGCCACTTAGAATATAACCCCTTAACAATTTCAAGAAGTT
2819349 AG
66 AG
2819351 ATAAACAACCATTAAGAAAATGAAATGCCACTTAGAATATAACCCCTTAACAATTTCAAGAAGTT
1 ATAAACAACCATTAAGAAAATGAAATGCCACTTAGAATATAACCCCTTAACAATTTCAAGAAGTT
2819416 TGTAACATCA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.48, C:0.18, G:0.10, T:0.24
Consensus pattern (67 bp):
ATAAACAACCATTAAGAAAATGAAATGCCACTTAGAATATAACCCCTTAACAATTTCAAGAAGTT
AG
Found at i:2820962 original size:75 final size:75
Alignment explanation
Indices: 2820876--2821015 Score: 174
Period size: 75 Copynumber: 1.9 Consensus size: 75
2820866 AAAATCAATA
* * *
2820876 TCAAGACTCAAA-TCACAATATTAAGTTTAGAACAGTAAAATCCATAAACAAACCACAATATTAA
1 TCAAGACTCAAACT-ACAATATTAACTCTAGAACAATAAAATCCATAAACAAACCACAATATTAA
2820940 AACGTCAAATT
65 AACGTCAAATT
* * * * * * *
2820951 TCAAGATTCAAACTATAATATTAACTCTAGAATAATAAAATTCATAATCAAATCATAATATTAAA
1 TCAAGACTCAAACTACAATATTAACTCTAGAACAATAAAATCCATAAACAAACCACAATATTAAA
2821016 GTGTTAAATC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
75 53 0.98
76 1 0.02
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.28
Consensus pattern (75 bp):
TCAAGACTCAAACTACAATATTAACTCTAGAACAATAAAATCCATAAACAAACCACAATATTAAA
ACGTCAAATT
Found at i:2822333 original size:41 final size:41
Alignment explanation
Indices: 2822259--2822579 Score: 331
Period size: 41 Copynumber: 7.8 Consensus size: 41
2822249 AACACAAACT
* ** * * *
2822259 CCACTAAAGTACAAATCTATAATGACATATGTATATAAATG
1 CCACTAAAGTACAAGTCTATAGCGGCATTTGTATAAAAATG
* * *
2822300 CCACTAAAGTACAAGTGTATAGTGGCATTTGTATAAAAACG
1 CCACTAAAGTACAAGTCTATAGCGGCATTTGTATAAAAATG
* * * *
2822341 ACACTAAAGTACAAGTTTATAGTGGCGTTTGTA-AATAAATG
1 CCACTAAAGTACAAGTCTATAGCGGCATTTGTATAA-AAATG
* * * *
2822382 CCACTAAAGTACAAGTCTATAGCGGCTTTTATATACAAACG
1 CCACTAAAGTACAAGTCTATAGCGGCATTTGTATAAAAATG
*
2822423 CCACTAAAGTA-AGAGTCTATAGCGGCGTTTGTATAAAAATG
1 CCACTAAAGTACA-AGTCTATAGCGGCATTTGTATAAAAATG
** * * *
2822464 CCACTAAAGTATGAGCCTATAGCGGCGTTTGTAAACACAAATG
1 CCACTAAAGTACAAGTCTATAGCGGCATTTGTATA-A-AAATG
* *
2822507 CCACTAAAGTACGAGTCTATAGCGGCATTTGTATAAAAACG
1 CCACTAAAGTACAAGTCTATAGCGGCATTTGTATAAAAATG
* * * *
2822548 CCACTAAAGTACTACTCTGTTGCGGCATTTGT
1 CCACTAAAGTACAAGTCTATAGCGGCATTTGT
2822580 TGGGAAAACG
Statistics
Matches: 240, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
40 3 0.01
41 198 0.82
42 3 0.01
43 36 0.15
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (41 bp):
CCACTAAAGTACAAGTCTATAGCGGCATTTGTATAAAAATG
Found at i:2822485 original size:123 final size:125
Alignment explanation
Indices: 2822243--2822579 Score: 385
Period size: 123 Copynumber: 2.7 Consensus size: 125
2822233 ACTTGCAGCA
* ** * * * * *
2822243 TTTGTAAACACAAACT-CCACTAAAGTACAAATCTATAATGACATATGTATATAAATGCCACTAA
1 TTTGTAAACACAAA-TGCCACTAAAGTACAAGTCTATAGCGGCATTTATATAAAAACGCCACTAA
* * ** *
2822307 AGTACAAGTGTATAGTGGCATTTGTATAAAAACGACACTAAAGTACAAGTTTATAGTGGCG
65 AGTACAAGTCTATAGCGGCATTTGTATAAAAACGACACTAAAGTACAAGCCTATAGCGGCG
* * *
2822368 TTTGT-AA-ATAAATGCCACTAAAGTACAAGTCTATAGCGGCTTTTATATACAAACGCCACTAAA
1 TTTGTAAACACAAATGCCACTAAAGTACAAGTCTATAGCGGCATTTATATAAAAACGCCACTAAA
* * * **
2822431 GTA-AGAGTCTATAGCGGCGTTTGTATAAAAATGCCACTAAAGTATGAGCCTATAGCGGCG
66 GTACA-AGTCTATAGCGGCATTTGTATAAAAACGACACTAAAGTACAAGCCTATAGCGGCG
* *
2822491 TTTGTAAACACAAATGCCACTAAAGTACGAGTCTATAGCGGCATTTGTATAAAAACGCCACTAAA
1 TTTGTAAACACAAATGCCACTAAAGTACAAGTCTATAGCGGCATTTATATAAAAACGCCACTAAA
* * * *
2822556 GTACTACTCTGTTGCGGCATTTGT
66 GTACAAGTCTATAGCGGCATTTGT
2822580 TGGGAAAACG
Statistics
Matches: 177, Mismatches: 30, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
122 2 0.01
123 97 0.55
124 4 0.02
125 74 0.42
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (125 bp):
TTTGTAAACACAAATGCCACTAAAGTACAAGTCTATAGCGGCATTTATATAAAAACGCCACTAAA
GTACAAGTCTATAGCGGCATTTGTATAAAAACGACACTAAAGTACAAGCCTATAGCGGCG
Found at i:2822608 original size:125 final size:124
Alignment explanation
Indices: 2822243--2822621 Score: 338
Period size: 125 Copynumber: 3.0 Consensus size: 124
2822233 ACTTGCAGCA
* ** * * * * *
2822243 TTTGTAAACACAAACT-CCACTAAAGTACAAATCTATAATGACATATGTATATAAATGCCACTAA
1 TTTGTAAA-ACAAA-TGCCACTAAAGTACAAGTCTATAGCGGCATTTATATAAAAACGCCACTAA
* * * * * * ** *
2822307 AGTACA-AGTGTATAGTGGCATTTGTATAAAAACGACACTAAAGTA-CAAGTTTATAGTGGCG
64 AGTA-AGACTCTATAGCGGCATTTGTATAAAAACGCCACTAAAGGATGAA-CCTATAGCGGCG
* * *
2822368 TTTGT-AAATAAATGCCACTAAAGTACAAGTCTATAGCGGCTTTTATATACAAACGCCACTAAAG
1 TTTGTAAAACAAATGCCACTAAAGTACAAGTCTATAGCGGCATTTATATAAAAACGCCACTAAAG
* * * * *
2822432 TAAGAGTCTATAGCGGCGTTTGTATAAAAATGCCACTAAAGTATGAGCCTATAGCGGCG
66 TAAGACTCTATAGCGGCATTTGTATAAAAACGCCACTAAAGGATGAACCTATAGCGGCG
* *
2822491 TTTGTAAACACAAATGCCACTAAAGTACGAGTCTATAGCGGCATTTGTATAAAAACGCCACTAAA
1 TTTGTAAA-ACAAATGCCACTAAAGTACAAGTCTATAGCGGCATTTATATAAAAACGCCACTAAA
** * * * * * *
2822556 GTACTACTCTGTTGCGGCATTTGT-TGGGAAAACGCCACT-ATGGATGAACCTATTGCGGCA
65 GTAAGACTCTATAGCGGCATTTGTAT--AAAAACGCCACTAAAGGATGAACCTATAGCGGCG
2822616 TTTGTA
1 TTTGTA
2822622 TAAAAACGCT
Statistics
Matches: 209, Mismatches: 38, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
122 2 0.01
123 95 0.45
124 6 0.03
125 96 0.46
126 10 0.05
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (124 bp):
TTTGTAAAACAAATGCCACTAAAGTACAAGTCTATAGCGGCATTTATATAAAAACGCCACTAAAG
TAAGACTCTATAGCGGCATTTGTATAAAAACGCCACTAAAGGATGAACCTATAGCGGCG
Found at i:2827772 original size:19 final size:19
Alignment explanation
Indices: 2827750--2827786 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
2827740 TTATAATAAT
2827750 ATTTTAA-TTAAATAATTAA
1 ATTTTAACTTAAA-AATTAA
2827769 ATTTTAACTTAAAAATTA
1 ATTTTAACTTAAAAATTA
2827787 TATCTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
ATTTTAACTTAAAAATTAA
Found at i:2829558 original size:161 final size:161
Alignment explanation
Indices: 2829293--2829614 Score: 644
Period size: 161 Copynumber: 2.0 Consensus size: 161
2829283 CTTCTTTAAA
2829293 CTTCGATCTACTCATCGTCCGGCCACCGTTCGACGAACTGAAACCACCATCGTGTTTGTTATCGA
1 CTTCGATCTACTCATCGTCCGGCCACCGTTCGACGAACTGAAACCACCATCGTGTTTGTTATCGA
2829358 ACGATGAATAAAACCCCTCAAAGCTCTCGTCGTGAATCGGTGTCGTTTGTCGTAAATTTCAATCG
66 ACGATGAATAAAACCCCTCAAAGCTCTCGTCGTGAATCGGTGTCGTTTGTCGTAAATTTCAATCG
2829423 GAAGAATCATCGGTTTAACTCAATTTCTGTT
131 GAAGAATCATCGGTTTAACTCAATTTCTGTT
2829454 CTTCGATCTACTCATCGTCCGGCCACCGTTCGACGAACTGAAACCACCATCGTGTTTGTTATCGA
1 CTTCGATCTACTCATCGTCCGGCCACCGTTCGACGAACTGAAACCACCATCGTGTTTGTTATCGA
2829519 ACGATGAATAAAACCCCTCAAAGCTCTCGTCGTGAATCGGTGTCGTTTGTCGTAAATTTCAATCG
66 ACGATGAATAAAACCCCTCAAAGCTCTCGTCGTGAATCGGTGTCGTTTGTCGTAAATTTCAATCG
2829584 GAAGAATCATCGGTTTAACTCAATTTCTGTT
131 GAAGAATCATCGGTTTAACTCAATTTCTGTT
2829615 GGTTTTCCGT
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 161 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (161 bp):
CTTCGATCTACTCATCGTCCGGCCACCGTTCGACGAACTGAAACCACCATCGTGTTTGTTATCGA
ACGATGAATAAAACCCCTCAAAGCTCTCGTCGTGAATCGGTGTCGTTTGTCGTAAATTTCAATCG
GAAGAATCATCGGTTTAACTCAATTTCTGTT
Found at i:2832499 original size:24 final size:24
Alignment explanation
Indices: 2832376--2832485 Score: 175
Period size: 24 Copynumber: 4.6 Consensus size: 24
2832366 AATTCAGTTG
*
2832376 TGATACCTGACCTGGATTTTGATA
1 TGATACTTGACCTGGATTTTGATA
2832400 TGATACTTGACCTGGATTTTGATA
1 TGATACTTGACCTGGATTTTGATA
2832424 TGATACTTGACCTGGATTTTGATA
1 TGATACTTGACCTGGATTTTGATA
* * * *
2832448 TGATACTTTACTTGGATTCTGATC
1 TGATACTTGACCTGGATTTTGATA
2832472 TGATACTTGACCTG
1 TGATACTTGACCTG
2832486 AATTATGTTT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 79 1.00
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (24 bp):
TGATACTTGACCTGGATTTTGATA
Done.