Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4521124
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 21
Found at i:381948 original size:27 final size:27
Alignment explanation
Indices: 381865--381964 Score: 92
Period size: 27 Copynumber: 3.5 Consensus size: 27
381855 TAAAAATGGT
* * *
381865 TAAATACATATTAACAAATATTTTTAAA
1 TAAATACAAATTAATAAATATATTT-AA
* *
381893 GTAAATAAAAATTTAATATATGAATATTTAA
1 -TAAATACAAA-TTAATAAAT--ATATTTAA
* *
381924 TAAATACATATTAATAAATATATTTAT
1 TAAATACAAATTAATAAATATATTTAA
381951 TAAATACAAATTAA
1 TAAATACAAATTAA
381965 GAATAATGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
27 20 0.34
29 16 0.28
30 15 0.26
31 2 0.03
32 5 0.09
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (27 bp):
TAAATACAAATTAATAAATATATTTAA
Found at i:381953 original size:16 final size:14
Alignment explanation
Indices: 381920--381964 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
381910 ATATGAATAT
381920 TTAATAAATACATA
1 TTAATAAATACATA
*
381934 TTAATAAATATAT-
1 TTAATAAATACATA
* *
381947 TTATTAAATACAAA
1 TTAATAAATACATA
381961 TTAA
1 TTAA
381965 GAATAATGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (14 bp):
TTAATAAATACATA
Found at i:382984 original size:43 final size:43
Alignment explanation
Indices: 382923--383394 Score: 316
Period size: 43 Copynumber: 10.9 Consensus size: 43
382913 ATGAATGTAA
* * *
382923 AAAAAATGAGATT-AAAAAAATTAGGGCTTCAATTATAAATAC
1 AAAAAGTGAGATTGAAAAAAATTAGGGCTTCAATTATAAAGAT
* * * *
382965 AAAAAGTGGGATTG-AAAAAATTGGAGGCTTCAATTGTAAAGGT
1 AAAAAGTGAGATTGAAAAAAATTAG-GGCTTCAATTATAAAGAT
* * *
383008 AGAAAGTGAGATTG-AAAAAGTTAGGGGCTTCAATTATAAAGGT
1 AAAAAGTGAGATTGAAAAAAATTA-GGGCTTCAATTATAAAGAT
* *
383051 AAAAAGTGATATTG-AAAAAATTAGGGGTCTT-AATTATAAAAAT
1 AAAAAGTGAGATTGAAAAAAATTA-GGG-CTTCAATTATAAAGAT
** ** * * * **
383094 AAAAAGTG-GAACAAGAAAAAAAATTAGATACCTCGACTATAAAGGC
1 AAAAAGTGAG-A-TTG-AAAAAAATTAG-GGCTTCAATTATAAAGAT
* * * *
383140 AAAAATTAAGA-TAAAAAGAAATT-GGAGCTTCAATTATAAAGCT
1 AAAAAGTGAGATTGAAAA-AAATTAGG-GCTTCAATTATAAAGAT
*
383183 -AAAAGTGAGATTG--ATAAATTATGGGCCTT-AATTATAAAGAT
1 AAAAAGTGAGATTGAAAAAAATTA-GGG-CTTCAATTATAAAGAT
* * *
383224 AAAAAGTTG-GATTGAAAAAAATATATGGACCTCAATTATAAAGGT
1 AAAAAG-TGAGATTGAAAAAAAT-TA-GGGCTTCAATTATAAAGAT
* *
383269 AAAAGATTGA-ATTGAAAAAAA-TAGGGACCTCAATTATAAA-AGT
1 AAAA-AGTGAGATTGAAAAAAATTAGGG-CTTCAATTATAAAGA-T
*
383312 AAAAAGTGAGATT-AAAAAGATTAGAGGCTTCAATTATAAA-AGT
1 AAAAAGTGAGATTGAAAAAAATTAG-GGCTTCAATTATAAAGA-T
* *
383355 AGAAAGTGAGATTG-AAAAAATTATGGGCCTCAATTATAAA
1 AAAAAGTGAGATTGAAAAAAATTA-GGGCTTCAATTATAAA
383395 TAGGTAAACT
Statistics
Matches: 341, Mismatches: 57, Indels: 63
0.74 0.12 0.14
Matches are distributed among these distances:
40 5 0.01
41 13 0.04
42 55 0.16
43 187 0.55
44 20 0.06
45 36 0.11
46 24 0.07
47 1 0.00
ACGTcount: A:0.49, C:0.06, G:0.19, T:0.25
Consensus pattern (43 bp):
AAAAAGTGAGATTGAAAAAAATTAGGGCTTCAATTATAAAGAT
Found at i:383026 original size:86 final size:85
Alignment explanation
Indices: 382924--383394 Score: 363
Period size: 86 Copynumber: 5.5 Consensus size: 85
382914 TGAATGTAAA
* * * * * *
382924 AAAAATGAGATTAAAAAAATTA-GGGCTTCAATTATAAATACAAAAAGTGGGATTGAAAAAATTG
1 AAAAGTGAGATTGAAAAAATTATGGGCCTCAATTATAAAGATAAAAAGTGAGATTGAAAAAATTG
*
382988 GAGGCTTCAATTGTAAAGGT
66 GAGGCTTCAATTATAAAGGT
* * * * *
383008 AGAAAGTGAGATTGAAAAAGTTAGGGGCTTCAATTATAAAGGTAAAAAGTGATATTGAAAAAATT
1 A-AAAGTGAGATTGAAAAAATTATGGGCCTCAATTATAAAGATAAAAAGTGAGATTGAAAAAATT
**
383073 AGG-GGTCTT-AATTATAAAAAT
65 -GGAGG-CTTCAATTATAAAGGT
** ** * * ** * * **
383094 AAAAAGTG-GAACAAGAAAAAAAATTA-GATACCTCGACTATAAAGGCAAAAATTAAGATAAAAA
1 -AAAAGTGAG-A-TTG--AAAAAATTATG-GGCCTCAATTATAAAGATAAAAAGTGAGATTGAAA
*
383157 GAAATTGGA-GCTTCAATTATAAAGCT
60 -AAATTGGAGGCTTCAATTATAAAGGT
* * *
383183 AAAAGTGAGATTG-ATAAATTATGGGCCTTAATTATAAAGATAAAAAGTTG-GATTGAAAAAAAT
1 AAAAGTGAGATTGAAAAAATTATGGGCCTCAATTATAAAGATAAAAAG-TGAGATTGAAAAAATT
** *
383246 ATATGGACCTCAATTATAAAGGT
65 GGA-GG-CTTCAATTATAAAGGT
*
383269 AAAAGATTGA-ATTGAAAAAAATA-GGGACCTCAATTATAAA-AGTAAAAAGTGAGATT-AAAAA
1 AAAAG--TGAGATTGAAAAAATTATGGG-CCTCAATTATAAAGA-TAAAAAGTGAGATTGAAAAA
* *
383330 GATTAGAGGCTTCAATTATAAAAGT
62 -ATTGGAGGCTTCAATTATAAAGGT
383355 AGAAAGTGAGATTGAAAAAATTATGGGCCTCAATTATAAA
1 A-AAAGTGAGATTGAAAAAATTATGGGCCTCAATTATAAA
383395 TAGGTAAACT
Statistics
Matches: 304, Mismatches: 54, Indels: 56
0.73 0.13 0.14
Matches are distributed among these distances:
83 5 0.02
84 30 0.10
85 25 0.08
86 113 0.37
87 32 0.11
88 48 0.16
89 46 0.15
90 5 0.02
ACGTcount: A:0.49, C:0.06, G:0.19, T:0.25
Consensus pattern (85 bp):
AAAAGTGAGATTGAAAAAATTATGGGCCTCAATTATAAAGATAAAAAGTGAGATTGAAAAAATTG
GAGGCTTCAATTATAAAGGT
Found at i:387292 original size:183 final size:182
Alignment explanation
Indices: 386925--387377 Score: 595
Period size: 183 Copynumber: 2.5 Consensus size: 182
386915 AAATTAAACG
* * * * *
386925 AAGGTTAAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCATCGGACGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTAT
* * * *
386990 GAACTCTCTACTGGATATTTTGAACCAATGTTGAACAAATTCTTCTCATTATGAACTTCTCCTCC
66 GAACTCTCCACTGAAAATGTTGAACCAATGTTGAACAAATTCTTCTCATTATGAACTTCTCCTCC
* * *
387055 TTCGTTTGATGAGTTCTTCTCATTATGAACTCTCCACTAGAAATGTTAAGCC
131 CTCATTGGATGAGTTCTTCTCATTATGAACTCTCCACTAGAAATGTTAAGCC
387107 AAGGTTGAACAAGTTCTTCTCATTATGAACTT-TATCTCCCTCGTTGGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCT-TCTCCCTCGTTGGATGAGTTCTTCTCATTA
* ** * * *
387171 TGAACTCTCCACTGAAAAATGTT-AAGGCAATGTTGAATGAGTTCTTCTCATTATGAACTTTTTC
65 TGAACTCTCCACTG-AAAATGTTGAA-CCAATGTTGAACAAATTCTTCTCATTATGAACTTCTCC
* * * * * * *
387235 TCCCTCATTGGTTGAGTTTTTCTCCTTATTAACTCTCCATTGGAAATGTTGAGCC
128 TCCCTCATTGGATGAGTTCTTCTCATTATGAACTCTCCACTAGAAATGTTAAGCC
* * *
387290 AAGGTTGAACAAGTTCTTATTATTATGAACTTCTTCTCTCTCGTTGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTAT
* *
387355 GAACTCTCCATTGGAAATGTTGA
66 GAACTCTCCACTGAAAATGTTGA
387378 TTGGTTTATC
Statistics
Matches: 236, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
181 1 0.00
182 79 0.33
183 155 0.66
184 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (182 bp):
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTAT
GAACTCTCCACTGAAAATGTTGAACCAATGTTGAACAAATTCTTCTCATTATGAACTTCTCCTCC
CTCATTGGATGAGTTCTTCTCATTATGAACTCTCCACTAGAAATGTTAAGCC
Found at i:387376 original size:91 final size:91
Alignment explanation
Indices: 386925--387377 Score: 584
Period size: 91 Copynumber: 5.0 Consensus size: 91
386915 AAATTAAACG
* * * * *
386925 AAGGTTAAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCATCGGACGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTAT
* * * *
386990 GAACTCTCTACTGGATATTTTGAACC
66 GAACTCTCCACTGGAAATGTTGAGCC
* * * * *
387016 AATGTTGAACAAATTCTTCTCATTATGAACTTCTCCTCCTTCGTTTGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTAT
* *
387081 GAACTCTCCACTAGAAATGTTAAGCC
66 GAACTCTCCACTGGAAATGTTGAGCC
387107 AAGGTTGAACAAGTTCTTCTCATTATGAACTT-TATCTCCCTCGTTGGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCT-TCTCCCTCGTTGGATGAGTTCTTCTCATTA
* * *
387171 TGAACTCTCCACTGAAAAATGTTAAGGC
65 TGAACTCTCCACTG-GAAATGTTGAGCC
* ** * * * * *
387199 AATGTTGAATGAGTTCTTCTCATTATGAACTTTTTCTCCCTCATTGGTTGAGTTTTTCTCCTTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTAT
* *
387264 TAACTCTCCATTGGAAATGTTGAGCC
66 GAACTCTCCACTGGAAATGTTGAGCC
* * *
387290 AAGGTTGAACAAGTTCTTATTATTATGAACTTCTTCTCTCTCGTTGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTAT
*
387355 GAACTCTCCATTGGAAATGTTGA
66 GAACTCTCCACTGGAAATGTTGA
387378 TTGGTTTATC
Statistics
Matches: 311, Mismatches: 48, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
90 1 0.00
91 231 0.74
92 78 0.25
93 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (91 bp):
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTAT
GAACTCTCCACTGGAAATGTTGAGCC
Found at i:388287 original size:5 final size:5
Alignment explanation
Indices: 388277--388341 Score: 62
Period size: 5 Copynumber: 13.0 Consensus size: 5
388267 CGAACATCTC
* * *
388277 CTTTT CTTTT CTTTTT CTTCTT TTTTT CCTTT -TTTT CCTTT C-TTT CTTTT
1 CTTTT CTTTT C-TTTT CTT-TT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
*
388327 CTTTT CTCTT CTTTT
1 CTTTT CTTTT CTTTT
388342 TTTATTTTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
4 7 0.14
5 33 0.67
6 9 0.18
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
CTTTT
Found at i:388313 original size:31 final size:30
Alignment explanation
Indices: 388278--388365 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 30
388268 GAACATCTCC
388278 TTTTCTTTTCTTTTTCTTCTTTTTTTCCTTT
1 TTTTCTTTTCTTTTT-TTCTTTTTTTCCTTT
*
388309 TTTTCCTTTCTTTCTTTTCTTTTCTCTT-CTTT
1 TTTTCTTTTCTTT-TTTTCTTTT-T-TTCCTTT
* * *
388341 TTTTATTTT-TATTTTTATTTTTTTC
1 TTTTCTTTTCTTTTTTTCTTTTTTTC
388366 TTCTTAGGCG
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
28 2 0.04
29 1 0.02
30 8 0.17
31 21 0.44
32 14 0.29
33 2 0.04
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (30 bp):
TTTTCTTTTCTTTTTTTCTTTTTTTCCTTT
Found at i:388350 original size:19 final size:17
Alignment explanation
Indices: 388277--388370 Score: 57
Period size: 17 Copynumber: 5.2 Consensus size: 17
388267 CGAACATCTC
388277 CTTTTCTTTTCTTTTTCTT
1 CTTTT-TTTT-TTTTTCTT
388296 CTTTTTTTCCTTTTTTTCCTTT
1 C-TTTTTT--TTTTTTT-C-TT
* *
388318 CTTTCTTTTCTTTTC-T
1 CTTTTTTTTTTTTTCTT
*
388334 CTTCTTTTTTTATTT-TT
1 CTT-TTTTTTTTTTTCTT
* *
388351 ATTTTTATTTTTTTCTT
1 CTTTTTTTTTTTTTCTT
388368 CTT
1 CTT
388371 AGGCGTAGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
16 13 0.22
17 15 0.26
18 1 0.02
19 9 0.16
20 9 0.16
21 8 0.14
22 3 0.05
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTTTTTTTTTTTTCTT
Found at i:403236 original size:18 final size:18
Alignment explanation
Indices: 403215--403266 Score: 104
Period size: 18 Copynumber: 2.9 Consensus size: 18
403205 TCAATCAACT
403215 GTCAATGGTCGATCAATG
1 GTCAATGGTCGATCAATG
403233 GTCAATGGTCGATCAATG
1 GTCAATGGTCGATCAATG
403251 GTCAATGGTCGATCAA
1 GTCAATGGTCGATCAA
403267 GATGGTCGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (18 bp):
GTCAATGGTCGATCAATG
Found at i:410570 original size:26 final size:27
Alignment explanation
Indices: 410510--410592 Score: 97
Period size: 26 Copynumber: 3.3 Consensus size: 27
410500 TATATTATAG
*
410510 ATATT-AATTTTAATATTAATTTTTTA
1 ATATTAAATTATAATATTAATTTTTTA
410536 A-A-TAAATTA-AATATTAATTTTTTA
1 ATATTAAATTATAATATTAATTTTTTA
*
410560 ATATTATATTATAGATATTAA--TTTTA
1 ATATTAAATTATA-ATATTAATTTTTTA
410586 ATATTAA
1 ATATTAA
410593 TTTTTTAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
24 17 0.35
25 6 0.12
26 18 0.37
27 1 0.02
28 7 0.14
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (27 bp):
ATATTAAATTATAATATTAATTTTTTA
Found at i:410593 original size:64 final size:64
Alignment explanation
Indices: 410492--410650 Score: 291
Period size: 64 Copynumber: 2.5 Consensus size: 64
410482 AGGTTTTATA
* *
410492 TTTAATTTTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATTT
1 TTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATAT
410556 TTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATAT
1 TTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATAT
410620 TTTAATATTATATTATAGATATTTAATTTTA
1 TTTAATATTATATTATAGATA-TTAATTTTA
410651 TATCATATAA
Statistics
Matches: 92, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
64 83 0.90
65 9 0.10
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (64 bp):
TTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATAT
Found at i:410595 original size:40 final size:38
Alignment explanation
Indices: 410545--410629 Score: 111
Period size: 38 Copynumber: 2.2 Consensus size: 38
410535 AAATAAATTA
*
410545 AATATTAATTTTTTAATATTATATTATAGATATT-A-ATTTT
1 AATATTAATTTTTTAA-A-TAAATTA-A-ATATTAATATTTT
410585 AATATTAATTTTTTAAATAAATTAAATATTAATATTTT
1 AATATTAATTTTTTAAATAAATTAAATATTAATATTTT
410623 AATATTA
1 AATATTA
410630 TATTATAGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
36 5 0.12
37 2 0.05
38 18 0.43
39 1 0.02
40 16 0.38
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (38 bp):
AATATTAATTTTTTAAATAAATTAAATATTAATATTTT
Found at i:410641 original size:14 final size:13
Alignment explanation
Indices: 410487--410642 Score: 78
Period size: 14 Copynumber: 12.2 Consensus size: 13
410477 CAAAGAGGTT
*
410487 TTATATT-TAATT
1 TTATATTATAATA
410499 TTATATTATAGATA
1 TTATATTATA-ATA
*
410513 TTA-ATTTTAATA
1 TTATATTATAATA
* *
410525 TTAATTTTTTAA-A
1 TT-ATATTATAATA
*
410538 -TAAATTA-AATA
1 TTATATTATAATA
* *
410549 TTAATTTTTTAATA
1 TT-ATATTATAATA
410563 TTATATTATAGATA
1 TTATATTATA-ATA
*
410577 TTA-ATTTTAATA
1 TTATATTATAATA
* *
410589 TTAATTTTTTAA-A
1 TT-ATATTATAATA
*
410602 -TAAATTA-AATA
1 TTATATTATAATA
*
410613 TTAATATTTTAATA
1 TT-ATATTATAATA
410627 TTATATTATAGATA
1 TTATATTATA-ATA
410641 TT
1 TT
410643 TAATTTTATA
Statistics
Matches: 109, Mismatches: 19, Indels: 30
0.69 0.12 0.19
Matches are distributed among these distances:
10 4 0.04
11 8 0.07
12 21 0.19
13 36 0.33
14 40 0.37
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (13 bp):
TTATATTATAATA
Found at i:411342 original size:31 final size:31
Alignment explanation
Indices: 411305--411364 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
411295 TAGTTGTATG
*
411305 AATTATTTAAATTTCAGTATTGTAAAACTAA
1 AATTATTTAAATCTCAGTATTGTAAAACTAA
*
411336 AATTATTTGAATCTCAGTATTGTAAAACT
1 AATTATTTAAATCTCAGTATTGTAAAACT
411365 CTTTTAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (31 bp):
AATTATTTAAATCTCAGTATTGTAAAACTAA
Found at i:416096 original size:16 final size:16
Alignment explanation
Indices: 416075--416111 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
416065 TGGATGTGTT
416075 TGATTCTTGTTTACTG
1 TGATTCTTGTTTACTG
416091 TGATTCTTGTTTACTG
1 TGATTCTTGTTTACTG
416107 TGATT
1 TGATT
416112 TTCGCTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.14, C:0.11, G:0.19, T:0.57
Consensus pattern (16 bp):
TGATTCTTGTTTACTG
Found at i:418024 original size:22 final size:18
Alignment explanation
Indices: 417999--418046 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 18
417989 TATAATATCA
417999 TAATAATTGTTTTATAATAATT
1 TAATAATT-TTTTA-AAT--TT
418021 TAATGAATTTTTTAAATTT
1 TAAT-AATTTTTTAAATTT
418040 TAATAAT
1 TAATAAT
418047 AAAAATATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
19 6 0.24
21 3 0.12
22 9 0.36
23 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (18 bp):
TAATAATTTTTTAAATTT
Found at i:418345 original size:129 final size:130
Alignment explanation
Indices: 418115--418375 Score: 515
Period size: 129 Copynumber: 2.0 Consensus size: 130
418105 TATATCAATA
418115 ACTCAGGCCAGATTTAAACTTTGTTTTTTTATTCTACGTATTTAGTATAATAATACTTTTGTTTG
1 ACTCAGGCCAGATTTAAACTTTGTTTTTTTATTCTACGTATTTAGTATAATAATACTTTTGTTTG
418180 TAACATAACTGCCTTTTACACCTGCAGCAAGGGAACCGCCTTTTACAACCAAC-AAAGGTTAGGT
66 TAACATAACTGCCTTTTACACCTGCAGCAAGGGAACCGCCTTTTACAACCAACAAAAGGTTAGGT
418244 ACTCAGGCCAGATTTAAACTTTGTTTTTTTATTCTACGTATTTAGTATAATAATACTTTTGTTTG
1 ACTCAGGCCAGATTTAAACTTTGTTTTTTTATTCTACGTATTTAGTATAATAATACTTTTGTTTG
418309 TAACATAACTGCCTTTTACACCTGCAGCAAGGGAACCGCCTTTTACAACCAACAAAAGGTTAGGT
66 TAACATAACTGCCTTTTACACCTGCAGCAAGGGAACCGCCTTTTACAACCAACAAAAGGTTAGGT
418374 AC
1 AC
418376 ACACTGACCC
Statistics
Matches: 131, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
129 118 0.90
130 13 0.10
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.36
Consensus pattern (130 bp):
ACTCAGGCCAGATTTAAACTTTGTTTTTTTATTCTACGTATTTAGTATAATAATACTTTTGTTTG
TAACATAACTGCCTTTTACACCTGCAGCAAGGGAACCGCCTTTTACAACCAACAAAAGGTTAGGT
Found at i:422479 original size:12 final size:11
Alignment explanation
Indices: 422462--422500 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
422452 AATATGTTTA
422462 AATTATTACTTT
1 AATTATTA-TTT
422474 AATTATTATTT
1 AATTATTATTT
*
422485 TATTATTATTTT
1 AATTATTA-TTT
422497 AATT
1 AATT
422501 TTAATCATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (11 bp):
AATTATTATTT
Found at i:422491 original size:11 final size:11
Alignment explanation
Indices: 422463--422497 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
422453 ATATGTTTAA
*
422463 ATTATTACTTTA
1 ATTATTA-TTTT
422475 ATTATTATTTT
1 ATTATTATTTT
422486 ATTATTATTTT
1 ATTATTATTTT
422497 A
1 A
422498 ATTTTAATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 15 0.68
12 7 0.32
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:424067 original size:18 final size:18
Alignment explanation
Indices: 424046--424092 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
424036 CATTTTTATT
424046 CATTTTTTATTGTT-CATA
1 CATTTTTTATT-TTGCATA
424064 CATTTTATT-TTTTGCATA
1 CATTTT-TTATTTTGCATA
*
424082 CATTTTATATT
1 CATTTTTTATT
424093 AATTTCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 3 0.12
18 20 0.80
19 2 0.08
ACGTcount: A:0.23, C:0.11, G:0.04, T:0.62
Consensus pattern (18 bp):
CATTTTTTATTTTGCATA
Found at i:424071 original size:16 final size:17
Alignment explanation
Indices: 424050--424089 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
424040 TTTATTCATT
424050 TTTTATTGTT-CATACA
1 TTTTATTGTTGCATACA
*
424066 TTTTATTTTTTGCATACA
1 TTTTA-TTGTTGCATACA
424084 TTTTAT
1 TTTTAT
424090 ATTAATTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 5 0.24
17 5 0.24
18 11 0.52
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (17 bp):
TTTTATTGTTGCATACA
Found at i:426197 original size:72 final size:72
Alignment explanation
Indices: 426111--426250 Score: 246
Period size: 72 Copynumber: 1.9 Consensus size: 72
426101 ATGCAATAAA
*
426111 GCTTGAGTTATCCCCCTTAAGCAATTGGTTAAT-AGCCCCGACTTTATGGATAATATTCAGCTAG
1 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATCA-CCCCGACTTTATGGATAATATTCAGCTAG
426175 CCTGTTAT
65 CCTGTTAT
*
426183 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATCACCCCGTCTTTATGGATAATATTCAGCTAGC
1 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATCACCCCGACTTTATGGATAATATTCAGCTAGC
426248 CTG
66 CTG
426251 ATATACTATT
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
72 64 0.98
73 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (72 bp):
GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATCACCCCGACTTTATGGATAATATTCAGCTAGC
CTGTTAT
Found at i:428586 original size:2 final size:2
Alignment explanation
Indices: 428579--428606 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
428569 ATAACTTCAA
428579 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
428607 TTAAAACGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:430671 original size:13 final size:13
Alignment explanation
Indices: 430653--430682 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
430643 GAGATGAAAG
430653 AAAGTAAAAGTGA
1 AAAGTAAAAGTGA
*
430666 AAAGTAAAATTGA
1 AAAGTAAAAGTGA
430679 AAAG
1 AAAG
430683 AAGATAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (13 bp):
AAAGTAAAAGTGA
Found at i:431109 original size:13 final size:12
Alignment explanation
Indices: 431090--431175 Score: 58
Period size: 13 Copynumber: 7.2 Consensus size: 12
431080 ATATAGGCGT
431090 GATATGGTGATG
1 GATATGGTGATG
431102 GAATATGGTGAT-
1 G-ATATGGTGATG
*
431114 GATATAGGCG-T-
1 GATAT-GGTGATG
431125 GATAATGGTGATG
1 GAT-ATGGTGATG
431138 GACTATGGTGAT-
1 GA-TATGGTGATG
*
431150 GATATAGGCG-T-
1 GATAT-GGTGATG
431161 GATAATGGTGATG
1 GAT-ATGGTGATG
431174 GA
1 GA
431176 CAGATTGTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
11 21 0.35
12 16 0.27
13 22 0.37
14 1 0.02
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.30
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:431145 original size:36 final size:36
Alignment explanation
Indices: 431072--431176 Score: 185
Period size: 36 Copynumber: 2.9 Consensus size: 36
431062 ATTTATAAGT
* *
431072 TGGTGATAATATAGGCGTGAT-ATGGTGATGGAATA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
431107 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
431143 TGGTGATGATATAGGCGTGATAATGGTGATGGAC
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAC
431177 AGATTGTATC
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
35 20 0.30
36 47 0.70
ACGTcount: A:0.29, C:0.05, G:0.36, T:0.30
Consensus pattern (36 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
Found at i:435640 original size:36 final size:35
Alignment explanation
Indices: 435567--435671 Score: 165
Period size: 36 Copynumber: 2.9 Consensus size: 35
435557 ATTTATAAGT
* *
435567 TGGTGATAATATAGGCGTGATATGGTGATGGAATA
1 TGGTGATGATATAGGCGTGATATGGTGATGGACTA
*
435602 TGGTGATGATATAGGCGTCATCATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGAT-ATGGTGATGGACTA
435638 TGGTGATGATATAGGCGTGATAATGGTGATGGAC
1 TGGTGATGATATAGGCGTGAT-ATGGTGATGGAC
435672 AGATTGTATC
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
35 19 0.30
36 45 0.70
ACGTcount: A:0.28, C:0.07, G:0.35, T:0.30
Consensus pattern (35 bp):
TGGTGATGATATAGGCGTGATATGGTGATGGACTA
Found at i:442979 original size:96 final size:96
Alignment explanation
Indices: 442815--443006 Score: 384
Period size: 96 Copynumber: 2.0 Consensus size: 96
442805 GGAAGTCGAA
442815 TGGGTATGTCAAGGCACTTTACTTTGTCACCTAAGTAAAGTTAGTGAGGGTATATACAAATGATA
1 TGGGTATGTCAAGGCACTTTACTTTGTCACCTAAGTAAAGTTAGTGAGGGTATATACAAATGATA
442880 ATGATGTGGCAAAATGGAATGACTGATGTGG
66 ATGATGTGGCAAAATGGAATGACTGATGTGG
442911 TGGGTATGTCAAGGCACTTTACTTTGTCACCTAAGTAAAGTTAGTGAGGGTATATACAAATGATA
1 TGGGTATGTCAAGGCACTTTACTTTGTCACCTAAGTAAAGTTAGTGAGGGTATATACAAATGATA
442976 ATGATGTGGCAAAATGGAATGACTGATGTGG
66 ATGATGTGGCAAAATGGAATGACTGATGTGG
443007 AAATGGAATT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 96 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.30
Consensus pattern (96 bp):
TGGGTATGTCAAGGCACTTTACTTTGTCACCTAAGTAAAGTTAGTGAGGGTATATACAAATGATA
ATGATGTGGCAAAATGGAATGACTGATGTGG
Found at i:446121 original size:54 final size:54
Alignment explanation
Indices: 446056--446271 Score: 258
Period size: 54 Copynumber: 4.0 Consensus size: 54
446046 CTGACGAGAA
* *
446056 ATCTGGGCAGAATCCACAGGAAAGAATGAATGTGTTGTCTAATGTTTTACGAAC
1 ATCTGGGCAGAAGCCACAGGAAAGAATGAATGTGTTGTCAAATGTTTTACGAAC
* *
446110 ATCTGTGCAGAAGCCAC-GAGAAA-ATATGAATGTGTTGTCAAATGTTTTGCGAAC
1 ATCTGGGCAGAAGCCACAG-GAAAGA-ATGAATGTGTTGTCAAATGTTTTACGAAC
* * * * ***
446164 ATCTGTGCAGAAGCCAAATGAAAGGATGAATGTGTTGTCAAATGTTTTGTAAAC
1 ATCTGGGCAGAAGCCACAGGAAAGAATGAATGTGTTGTCAAATGTTTTACGAAC
* * *
446218 ATCTGGGCAGAGGCCATAGGAAATG-ATGAATGTGTTGCCAAATGTTTTACGAAC
1 ATCTGGGCAGAAGCCACAGGAAA-GAATGAATGTGTTGTCAAATGTTTTACGAAC
446272 CAGTGATTAT
Statistics
Matches: 140, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
53 2 0.01
54 137 0.98
55 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (54 bp):
ATCTGGGCAGAAGCCACAGGAAAGAATGAATGTGTTGTCAAATGTTTTACGAAC
Found at i:447438 original size:123 final size:123
Alignment explanation
Indices: 447063--448055 Score: 1103
Period size: 123 Copynumber: 8.1 Consensus size: 123
447053 CACTCGAGGG
* * * * * * *
447063 ATCAATATTGCCAGAAAGAGTTTGTAATAAGAAAAACTCATATG-AGAAGGAAGAAAAAGTTCAT
1 ATCAACATTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCAT
* * *
447127 AATCTGAAGAACTTATTCAACCTTTTGCTTGACTCTATCGTAGAAGGAGATAGAGCAAC
65 AATCTGAAGAACTTATTCAACCTTTTGCTCGTCTCTATCGCAGAAGGAGATAGAGCAAC
* * *
447186 A-GAACCATTTCAAGACA-GAGTTCATAATAAGAAGAACTTC-TCTGAAGAGGAAGAAGAA-TTC
1 ATCAA-CATTTCCAGA-AGGAGTTCGTAATAAGAAGAAC-TCATCTGAAGAGGAAGAAGAAGTTC
* * * * *
447247 ATAGTCTGAAGAACTTATTCAACCTTTTGCTTGACTTTATCGCAGAAGGAGATAGAGAAAC
63 ATAATCTGAAGAACTTATTCAACCTTTTGCTCGTCTCTATCGCAGAAGGAGATAGAGCAAC
** * * * * * * *
447308 AGAAACATTTCTAGACA-AAGTTTGTAATAAGAAGAAATCCTCTGAAGAAGAAGAAGATGTTCAT
1 ATCAACATTTCCAGA-AGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCAT
* * ** * * * *
447372 AATCTGAATAACTTGTTCAACCTTTCACTCGTCTTTATTGCAAAAGGAGATAAAGCAAC
65 AATCTGAAGAACTTATTCAACCTTTTGCTCGTCTCTATCGCAGAAGGAGATAGAGCAAC
* * *
447431 ATCAACATTTCCAAAAGAAGTTAGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * * *
447496 ATCTGAAGAACTTGTTCAACATTTTGCTCGAT-TCTATCGCAGAAGGAGATAAAAACAAC
66 ATCTGAAGAACTTATTCAACCTTTTGCTCG-TCTCTATCGCAGAAGGAGAT-AGAGCAAC
* * *
447555 ATCAGCGTTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTAAAGAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * * * **
447620 ATCTGAAGAACTTGTTCGACCTTTTGCTCGAT-TCTATCGCAGAAGGAGACAGAGTAGT
66 ATCTGAAGAACTTATTCAACCTTTTGCTCG-TCTCTATCGCAGAAGGAGATAGAGCAAC
* * *
447678 ATCAACGTTTCCAGAAGGAGTTTGTAATAAGAAGAACTCATCTGAAGAGGAAGAATAAGTTCATA
1 ATCAACATTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * * *
447743 ATCTGAGGAACTTATTCAACCTTTTGCTTGAT-TCTATCGCAGAAGGAGATAGAGTAGC
66 ATCTGAAGAACTTATTCAACCTTTTGCTCG-TCTCTATCGCAGAAGGAGATAGAGCAAC
* * *
447801 ATCTACATTTCTAGACA-GAGTTCGTAATAAGAATAACTCATCTGAAGAGGAAGAAGAAGTTCAT
1 ATCAACATTTCCAGA-AGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCAT
* * *
447865 AGTCTGAAGAACTTATTCCACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAG-AAGC
65 AATCTGAAGAACTTATTCAACCTTTTGCTCGTCTCTATCGCAGAAGGAGATAGAGCAA-C
* * * *
447924 ATCAACGTTTCCAGAAGGAGTTCATAATAAGAAGAACTCATCTGAAGAAGAGGAAGAAGTTCATA
1 ATCAACATTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * * ** ** **
447989 ATCTGAAGAACTTGTTCAACCTTAT-CTCGACTC-ATTACAGAAAAAGATAGAGCAGT
66 ATCTGAAGAACTTATTCAACCTTTTGCTCGTCTCTATCGCAGAAGGAGATAGAGCAAC
448045 ATCAACATTTC
1 ATCAACATTTC
448056 TGTCTTAATA
Statistics
Matches: 752, Mismatches: 103, Indels: 32
0.85 0.12 0.04
Matches are distributed among these distances:
121 27 0.04
122 118 0.16
123 487 0.65
124 120 0.16
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (123 bp):
ATCAACATTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
ATCTGAAGAACTTATTCAACCTTTTGCTCGTCTCTATCGCAGAAGGAGATAGAGCAAC
Found at i:449516 original size:11 final size:11
Alignment explanation
Indices: 449488--449521 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
449478 ATATGTTTAA
*
449488 ATTATTACTTTA
1 ATTATTA-TTTT
449500 ATTATTATTTT
1 ATTATTATTTT
449511 ATTATTATTTT
1 ATTATTATTTT
449522 CATTTTAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:449552 original size:2 final size:2
Alignment explanation
Indices: 449532--449576 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
449522 CATTTTAATC
* *
449532 AT AT AA AT AT -T AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
449573 AT AT
1 AT AT
449577 TTGATTAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:452164 original size:19 final size:20
Alignment explanation
Indices: 452140--452178 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
452130 TAAAGTGAAA
452140 TAAGTTAA-TTTGTGTAAGT
1 TAAGTTAATTTTGTGTAAGT
452159 TAAGTTAATTTTGTGTAAGT
1 TAAGTTAATTTTGTGTAAGT
452179 GTGGTTAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (20 bp):
TAAGTTAATTTTGTGTAAGT
Found at i:453445 original size:12 final size:13
Alignment explanation
Indices: 453413--453449 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
453403 TATGAATTAG
453413 TGATATAAGAATA
1 TGATATAAGAATA
453426 TGATATAA-AATA
1 TGATATAAGAATA
453438 TGCA-ATAAGAAT
1 TG-ATATAAGAAT
453450 CGATATGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.54, C:0.03, G:0.14, T:0.30
Consensus pattern (13 bp):
TGATATAAGAATA
Found at i:453910 original size:18 final size:18
Alignment explanation
Indices: 453882--453930 Score: 73
Period size: 18 Copynumber: 2.7 Consensus size: 18
453872 GTGATATGTG
453882 GTCCTTCGGGACATAGTC
1 GTCCTTCGGGACATAGTC
*
453900 GT-CTATCGGGACATAGTG
1 GTCCT-TCGGGACATAGTC
453918 GTCCTTCGGGACA
1 GTCCTTCGGGACA
453931 AATTCTAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 2 0.07
18 24 0.86
19 2 0.07
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.27
Consensus pattern (18 bp):
GTCCTTCGGGACATAGTC
Found at i:461313 original size:41 final size:41
Alignment explanation
Indices: 461252--461332 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
461242 CCAACGGTGT
* *
461252 TGAACATTGATATACAAATGTATCAAAGCTGAACTGATAAC
1 TGAACATTGATACACAAATGTACCAAAGCTGAACTGATAAC
*
461293 TGAACATTGATACACGAATGTACCAAAGCTGAACTGATAA
1 TGAACATTGATACACAAATGTACCAAAGCTGAACTGATAA
461333 GAACTCACTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (41 bp):
TGAACATTGATACACAAATGTACCAAAGCTGAACTGATAAC
Found at i:463363 original size:10 final size:10
Alignment explanation
Indices: 463348--463380 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
463338 ATAACAACAT
463348 CAAATTAAAC
1 CAAATTAAAC
463358 CAAATTAAAC
1 CAAATTAAAC
463368 CAAATTAAAC
1 CAAATTAAAC
463378 CAA
1 CAA
463381 TATCCTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.61, C:0.21, G:0.00, T:0.18
Consensus pattern (10 bp):
CAAATTAAAC
Found at i:464739 original size:22 final size:20
Alignment explanation
Indices: 464709--464753 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
464699 GTCATGTTCG
*
464709 TCTTTCTTTTCTCTTCTCCGTT
1 TCTTGCTTTTCTC-TCT-CGTT
*
464731 TCTTGCTTTTTTCTCTCGTT
1 TCTTGCTTTTCTCTCTCGTT
464751 TCT
1 TCT
464754 ATCGCTTAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 3 0.14
22 11 0.52
ACGTcount: A:0.00, C:0.29, G:0.07, T:0.64
Consensus pattern (20 bp):
TCTTGCTTTTCTCTCTCGTT
Found at i:477365 original size:9 final size:9
Alignment explanation
Indices: 477351--477375 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
477341 GTTTCGAGGG
477351 GGAGTAGAA
1 GGAGTAGAA
477360 GGAGTAGAA
1 GGAGTAGAA
477369 GGAGTAG
1 GGAGTAG
477376 GGGCATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.48, T:0.12
Consensus pattern (9 bp):
GGAGTAGAA
Found at i:484909 original size:22 final size:20
Alignment explanation
Indices: 484872--484916 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
484862 TGCATTCTTG
*
484872 CATTTTTGCATCTTCATATA
1 CATTTTTGCATCTTCATAAA
*
484892 CATTTTTAAGCATTTTCATAAA
1 CATTTTT--GCATCTTCATAAA
484914 CAT
1 CAT
484917 GAAATTAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
22 14 0.67
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.47
Consensus pattern (20 bp):
CATTTTTGCATCTTCATAAA
Found at i:486113 original size:7 final size:7
Alignment explanation
Indices: 486101--486168 Score: 50
Period size: 7 Copynumber: 9.7 Consensus size: 7
486091 CAAAAAGGGC
486101 AAAAAGA
1 AAAAAGA
486108 AAAAAGA
1 AAAAAGA
486115 AAAGAAGCA
1 AAA-AAG-A
*
486124 AAAAAGG
1 AAAAAGA
*
486131 AAAAA-C
1 AAAAAGA
* *
486137 AAGAACA
1 AAAAAGA
486144 AAAAAG-
1 AAAAAGA
*
486150 AAAAAGC
1 AAAAAGA
*
486157 AAAAATA
1 AAAAAGA
486164 AAAAA
1 AAAAA
486169 AGGGGACAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
6 10 0.20
7 29 0.59
8 6 0.12
9 4 0.08
ACGTcount: A:0.79, C:0.06, G:0.13, T:0.01
Consensus pattern (7 bp):
AAAAAGA
Found at i:486147 original size:20 final size:20
Alignment explanation
Indices: 486101--486168 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 20
486091 CAAAAAGGGC
*
486101 AAAAAGAAAAAAGAAAAGAAGCA
1 AAAAAG-AAAAAG-CAAGAA-CA
486124 AAAAAGGAAAAA-CAAGAACA
1 AAAAA-GAAAAAGCAAGAACA
* *
486144 AAAAAGAAAAAGCAAAAATA
1 AAAAAGAAAAAGCAAGAACA
486164 AAAAA
1 AAAAA
486169 AGGGGACAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
19 6 0.15
20 18 0.45
21 5 0.12
23 10 0.25
24 1 0.03
ACGTcount: A:0.79, C:0.06, G:0.13, T:0.01
Consensus pattern (20 bp):
AAAAAGAAAAAGCAAGAACA
Found at i:486806 original size:22 final size:22
Alignment explanation
Indices: 486778--486828 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
486768 CCCCATCAAT
486778 CCTTTGAGCATCAAATACCAAA
1 CCTTTGAGCATCAAATACCAAA
*
486800 CCTTTGAGCATCAAATGCCAAA
1 CCTTTGAGCATCAAATACCAAA
486822 CCTTTGA
1 CCTTTGA
486829 CCAAACACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (22 bp):
CCTTTGAGCATCAAATACCAAA
Found at i:487579 original size:106 final size:106
Alignment explanation
Indices: 487391--487963 Score: 1011
Period size: 106 Copynumber: 5.4 Consensus size: 106
487381 TTTTTACAGC
487391 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
* *
487456 CGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAAT
66 CGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAAT
487497 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
* * *
487562 CGACGAAGGGACTGCTGGTTGTCAATAAACAATTTCCCAAT
66 CGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAAT
* *
487603 TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
* *
487668 CGACGAAGGAACCGCTGGTTGTCAAAAAAACAACTTCCCAAT
66 CGACGAAGGGACCGCTGGTTGTC-AACAAACAACTTCCCAAT
* *
487710 TTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
* *
487775 CGACGAAGGGACCGCTGGTTTTCAACAAACAACTTCTCAAT
66 CGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAAT
487816 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
487881 CGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAAT
66 CGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAAT
*
487922 TTCAGAGCCAATTTCAACTTCACAACGAATGATATTGGACTC
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
487964 GAAACAATAC
Statistics
Matches: 448, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
106 348 0.78
107 100 0.22
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (106 bp):
TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
CGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAAT
Found at i:487794 original size:213 final size:212
Alignment explanation
Indices: 487391--487963 Score: 1011
Period size: 213 Copynumber: 2.7 Consensus size: 212
487381 TTTTTACAGC
487391 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
* *
487456 CGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACA
66 CGACGAAGGGACCGCTGGTTGTCAAAAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACA
*
487521 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCA
131 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* *
487586 ATAAACAATTTCCCAAT
196 ACAAACAACTTCCCAAT
* *
487603 TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
* *
487668 CGACGAAGGAACCGCTGGTTGTCAAAAAAACAACTTCCCAATTTCGGAGCCAATTTCAACTTCAC
66 CGACGAAGGGACCGCTGGTTGTC-AAAAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCAC
* *
487733 AGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTC
130 AACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTC
*
487798 AACAAACAACTTCTCAAT
195 AACAAACAACTTCCCAAT
487816 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
*
487881 CGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACA
66 CGACGAAGGGACCGCTGGTTGTCAAAAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACA
*
487946 ACGAATGATATTGGACTC
131 ACGAAGGATATTGGACTC
487964 GAAACAATAC
Statistics
Matches: 341, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
212 141 0.41
213 200 0.59
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (212 bp):
TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
CGACGAAGGGACCGCTGGTTGTCAAAAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACA
ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
ACAAACAACTTCCCAAT
Found at i:489622 original size:22 final size:23
Alignment explanation
Indices: 489576--489634 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
489566 ATTATTATAT
489576 TTTA-TTTTATTTTTCTCTTTGA
1 TTTATTTTTATTTTTCTCTTTGA
* *
489598 TTTGTTTTTATTTATT-TGTTT-A
1 TTTATTTTTATTT-TTCTCTTTGA
*
489620 TTTATTATTATTTTT
1 TTTATTTTTATTTTT
489635 AAACATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
21 2 0.06
22 15 0.48
23 12 0.39
24 2 0.06
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.76
Consensus pattern (23 bp):
TTTATTTTTATTTTTCTCTTTGA
Found at i:489645 original size:12 final size:12
Alignment explanation
Indices: 489626--489658 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
489616 TTTATTTATT
489626 ATTATTTTTAAA
1 ATTATTTTTAAA
489638 CATT-TTTTTAAA
1 -ATTATTTTTAAA
489650 ATTATTTTT
1 ATTATTTTT
489659 TATTTTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.16
12 13 0.68
13 3 0.16
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTATTTTTAAA
Found at i:490089 original size:12 final size:12
Alignment explanation
Indices: 490072--490096 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
490062 TTGGTAAAAA
490072 AAATAATATTTT
1 AAATAATATTTT
490084 AAATAATATTTT
1 AAATAATATTTT
490096 A
1 A
490097 TCAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AAATAATATTTT
Found at i:495362 original size:21 final size:21
Alignment explanation
Indices: 495336--495404 Score: 54
Period size: 21 Copynumber: 3.3 Consensus size: 21
495326 AATATAGATT
495336 AGAGAGAATATAACCTAGTAG
1 AGAGAGAATATAACCTAGTAG
* * **
495357 AGAGAG--TGTGATTTA-TAG
1 AGAGAGAATATAACCTAGTAG
495375 ATTAGAGAGAATATAACCTAGTAG
1 A---GAGAGAATATAACCTAGTAG
495399 AGAGAG
1 AGAGAG
495405 GGTGATTTAT
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
18 4 0.12
19 5 0.15
21 16 0.47
23 5 0.15
24 4 0.12
ACGTcount: A:0.43, C:0.06, G:0.28, T:0.23
Consensus pattern (21 bp):
AGAGAGAATATAACCTAGTAG
Found at i:495387 original size:42 final size:42
Alignment explanation
Indices: 495328--495414 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
495318 GGCCTAACAA
*
495328 TATAGATTAGAGAGAATATAACCTAGTAGAGAGAGTGTGATT
1 TATAGATTAGAGAGAATATAACCTAGTAGAGAGAGGGTGATT
495370 TATAGATTAGAGAGAATATAACCTAGTAGAGAGAGGGTGATT
1 TATAGATTAGAGAGAATATAACCTAGTAGAGAGAGGGTGATT
495412 TAT
1 TAT
495415 GGTGCAGCAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.40, C:0.05, G:0.26, T:0.29
Consensus pattern (42 bp):
TATAGATTAGAGAGAATATAACCTAGTAGAGAGAGGGTGATT
Found at i:496792 original size:24 final size:26
Alignment explanation
Indices: 496760--496831 Score: 82
Period size: 24 Copynumber: 3.0 Consensus size: 26
496750 CTGTTATTTC
*
496760 AAATTTATTAATATA-AT-TTTAAGA
1 AAATATATTAATATATATATTTAAGA
*
496784 AAATATATTAATATATATATTTAA-T
1 AAATATATTAATATATATATTTAAGA
*
496809 ATATATA-T-ATATATATATTTAAG
1 AAATATATTAATATATATATTTAAG
496832 TTTTTATAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 14 0.33
24 15 0.36
25 8 0.19
26 5 0.12
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (26 bp):
AAATATATTAATATATATATTTAAGA
Found at i:496799 original size:2 final size:2
Alignment explanation
Indices: 496786--496826 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
496776 TTTTAAGAAA
*
496786 AT AT AT -T A- AT AT AT AT AT TT A- AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
496825 AT
1 AT
496827 TTAAGTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
1 3 0.09
2 31 0.91
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:496820 original size:23 final size:21
Alignment explanation
Indices: 496785--496830 Score: 74
Period size: 23 Copynumber: 2.1 Consensus size: 21
496775 ATTTTAAGAA
496785 AATATATTAATATATATATTT
1 AATATATTAATATATATATTT
496806 AATATATATATATATATATATTT
1 AATATAT-TA-ATATATATATTT
496829 AA
1 AA
496831 GTTTTTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 7 0.30
22 2 0.09
23 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATATATTAATATATATATTT
Found at i:497530 original size:29 final size:28
Alignment explanation
Indices: 497465--497537 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
497455 GATAAAAAAT
*
497465 ATTAAATTAAAAAT-ATTAAAACTAAAG
1 ATTAAAATAAAAATAATTAAAACTAAAG
** *
497492 GGTAATAATAAAAATAATTAAAATTATAAG
1 ATTAA-AATAAAAATAATTAAAACTA-AAG
497522 ATTAAAATATAAAATA
1 ATTAAAATA-AAAATA
497538 TAAAATATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
27 3 0.08
28 8 0.22
29 13 0.36
30 12 0.33
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.30
Consensus pattern (28 bp):
ATTAAAATAAAAATAATTAAAACTAAAG
Found at i:497544 original size:14 final size:13
Alignment explanation
Indices: 497507--497545 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
497497 TAATAAAAAT
497507 AATTAAAATTATAA
1 AATTAAAA-TATAA
*
497521 GATTAAAATATAA
1 AATTAAAATATAA
497534 AATATAAAATAT
1 AAT-TAAAATAT
497546 TTAAATTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AATTAAAATATAA
Found at i:498705 original size:21 final size:21
Alignment explanation
Indices: 498662--498710 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
498652 GTGTTGGGTC
* * *
498662 GGTTCTGGATCTGGGCTTTCG
1 GGTTTTGGATCTGGGCCTCCG
*
498683 GGTTTTGGGTCTGGGCCTCCG
1 GGTTTTGGATCTGGGCCTCCG
*
498704 GGATTTG
1 GGTTTTG
498711 TAAAACGGGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.04, C:0.18, G:0.41, T:0.37
Consensus pattern (21 bp):
GGTTTTGGATCTGGGCCTCCG
Found at i:498841 original size:3 final size:3
Alignment explanation
Indices: 498778--498824 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
498768 CTGTGATGTA
498778 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
498825 ATACTATAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:499617 original size:113 final size:113
Alignment explanation
Indices: 499414--499742 Score: 461
Period size: 113 Copynumber: 2.9 Consensus size: 113
499404 AGAGTCGAGC
* * *
499414 AAAAGGTTGAACAAGTTTTTCTCATTGTGAACTTT-TTCTTCC-TCTTCATATGAGTTCTTCTCA
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
499477 TTATGAACT-TCCTCTGGAAAAGTTGATCCATCGAATGATGAATTTAAGA
65 TTATGAACTCTAC-CTGGAAATGTTGATCCATCGAATGATGAATTTAAGA
* *
499526 AAAATGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
499591 TATGAACTCTACCT-GACAATGCTGATCCATC-AAGTGATGAATTTGAGC
66 TATGAACTCTACCTGGA-AATGTTGATCCATCGAA-TGATGAATTTAAGA
**
499639 AAAAGGTTGAACAAGTTCTTCTCATTATGAACCTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
499704 TATGAACTCTACCTGGAAATGTTAATCCATTGAATGATG
66 TATGAACTCTACCTGGAAATGTTGATCCATCGAATGATG
499743 GATACGAATC
Statistics
Matches: 193, Mismatches: 17, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
111 3 0.02
112 38 0.20
113 146 0.76
114 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.38
Consensus pattern (113 bp):
AAAAGGTTGAACAAGTTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTCTACCTGGAAATGTTGATCCATCGAATGATGAATTTAAGA
Found at i:500044 original size:22 final size:22
Alignment explanation
Indices: 500018--500071 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
500008 AAATCCAATA
*
500018 AATCTTTCTTCTTTGAAA-AGAG
1 AATCTATCTTCTTT-AAAGAGAG
* *
500040 GATCTATCATCTTTAAAGAGAG
1 AATCTATCTTCTTTAAAGAGAG
500062 AATCTATCTT
1 AATCTATCTT
500072 TGAAGAATGT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (22 bp):
AATCTATCTTCTTTAAAGAGAG
Found at i:500703 original size:18 final size:18
Alignment explanation
Indices: 500680--500752 Score: 121
Period size: 18 Copynumber: 4.1 Consensus size: 18
500670 CATTTGCAAG
**
500680 AATAAATTGAATTTTGGA
1 AATAAATTGAATTTCAGA
500698 AATAAATTGAATTTCAGA
1 AATAAATTGAATTTCAGA
500716 AATAAATTGAATTTCAGA
1 AATAAATTGAATTTCAGA
500734 AATAAATTGAATTTC-GA
1 AATAAATTGAATTTCAGA
500751 AA
1 AA
500753 AGATAAACTT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
17 4 0.08
18 49 0.92
ACGTcount: A:0.49, C:0.04, G:0.12, T:0.34
Consensus pattern (18 bp):
AATAAATTGAATTTCAGA
Found at i:501740 original size:19 final size:20
Alignment explanation
Indices: 501706--501743 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
501696 CAACAAAAAT
*
501706 TAATTTTTTTTAAATAATTA
1 TAATATTTTTTAAATAATTA
501726 TAATATTTTTT-AATAATT
1 TAATATTTTTTAAATAATT
501744 TTCAATCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TAATATTTTTTAAATAATTA
Found at i:501823 original size:3 final size:3
Alignment explanation
Indices: 501815--501859 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
501805 AGCTCACTTA
501815 TTC TTC TTC TTC TTC TT- TTC TTC TT- TTC TTC TT- TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
501860 AATCTTCATT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 6 0.15
3 33 0.85
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:501837 original size:8 final size:8
Alignment explanation
Indices: 501815--501855 Score: 73
Period size: 8 Copynumber: 5.0 Consensus size: 8
501805 AGCTCACTTA
501815 TTCTTCTT
1 TTCTTCTT
501823 CTTCTTCTT
1 -TTCTTCTT
501832 TTCTTCTT
1 TTCTTCTT
501840 TTCTTCTT
1 TTCTTCTT
501848 TTCTTCTT
1 TTCTTCTT
501856 CTTCAATCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 24 0.75
9 8 0.25
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (8 bp):
TTCTTCTT
Found at i:501837 original size:11 final size:12
Alignment explanation
Indices: 501815--501859 Score: 69
Period size: 11 Copynumber: 4.0 Consensus size: 12
501805 AGCTCACTTA
501815 TTCTTCTTCTTC
1 TTCTTCTTCTTC
501827 TTCTT-TTCTTC
1 TTCTTCTTCTTC
501838 TT-TTCTTCTT-
1 TTCTTCTTCTTC
501848 TTCTTCTTCTTC
1 TTCTTCTTCTTC
501860 AATCTTCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 4 0.13
11 21 0.70
12 5 0.17
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (12 bp):
TTCTTCTTCTTC
Found at i:501845 original size:16 final size:17
Alignment explanation
Indices: 501815--501859 Score: 83
Period size: 16 Copynumber: 2.7 Consensus size: 17
501805 AGCTCACTTA
501815 TTCTTCTTCTTCTTCTT
1 TTCTTCTTCTTCTTCTT
501832 TTCTTCTT-TTCTTCTT
1 TTCTTCTTCTTCTTCTT
501848 TTCTTCTTCTTC
1 TTCTTCTTCTTC
501860 AATCTTCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.59
17 11 0.41
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTCTTCTTCTTCTTCTT
Found at i:503142 original size:22 final size:23
Alignment explanation
Indices: 503117--503160 Score: 72
Period size: 22 Copynumber: 1.9 Consensus size: 23
503107 ACCAGGGACT
503117 AGGTAGATGG-ATTGAAAGGTGA
1 AGGTAGATGGAATTGAAAGGTGA
503139 AGGTAGATGGATATTGAAAGGT
1 AGGTAGATGGA-ATTGAAAGGT
503161 AAAGTCATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
24 10 0.50
ACGTcount: A:0.36, C:0.00, G:0.39, T:0.25
Consensus pattern (23 bp):
AGGTAGATGGAATTGAAAGGTGA
Found at i:504800 original size:29 final size:29
Alignment explanation
Indices: 504755--504813 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
504745 TGACAAGTGA
**
504755 CTAAAATATAAGTTTTG-AAAGTTTGAGGG
1 CTAAAATATAAACTTTGAAAAGTTT-AGGG
504784 CTAAAATATAAACTTTGTAAAAGTTTAGGG
1 CTAAAATATAAACTTTG-AAAAGTTTAGGG
504814 ACAAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 15 0.58
30 4 0.15
31 7 0.27
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (29 bp):
CTAAAATATAAACTTTGAAAAGTTTAGGG
Found at i:505463 original size:263 final size:264
Alignment explanation
Indices: 504955--505488 Score: 955
Period size: 271 Copynumber: 2.0 Consensus size: 264
504945 TCGGTATTGA
*
504955 AATCAGATAATCGGATTAAACCGGAATTTTACGAAAATTTGAAGGATGTTATAAAATGGTTGAAA
1 AATCAGATAATCGGATTAAACCAGAATTTTACGAAAATTTGAAGGATGTTATAAAATGGTTGAAA
*
505020 ATATTATTTTCATATTTTATATCAGAGAAATTTGGCTCCTAAAATGTAATTTTTTAGATTTGATC
66 ATATTATTTTCATATTTTATATCAGAGAAATTTGGCTCCTAAAATGTAATTTTTCAGATTTGATC
*
505085 GAACAGTGGGATTTTAGTGACTAAAATGAAATTTTGGAAAATTTGATTGTCAAAAAGGGAAATTG
131 GAACAGTGGAATTTTAGTGACTAAAATGAAA--TT-----ATTTGATTGTCAAAAAGGGAAATTG
505150 AGAGATGACTTTTTTACATCCATTTATGAATATTAAAATATAATTAAAGGAGTGGCATGGAGGTA
189 AGAGATGACTTTTTTACATCCATTTATGAATATTAAAATATAATTAAAGGAGTGGCATGGAGGTA
505215 AAAATAGGGAT
254 AAAATAGGGAT
505226 AATCAGATAATCGGATTAAACCAGAATTTTACGAAAATTTGAAGGATGTTATAAAATGGTTGAAA
1 AATCAGATAATCGGATTAAACCAGAATTTTACGAAAATTTGAAGGATGTTATAAAATGGTTGAAA
505291 ATATTATTTTCATATTTTATATCAGAGAAATTTGGCTCCTAAAAATGTAATTTTTCAGATTTGAT
66 ATATTATTTTCATATTTTATATCAGAGAAATTTGGCTCCT-AAAATGTAATTTTTCAGATTTGAT
505356 CGAACAGTGGAATTTTAGTGACTAAAATGAAA-T-TTTGATTGTCAAAAAGGGAAATTGAGAGAT
130 CGAACAGTGGAATTTTAGTGACTAAAATGAAATTATTTGATTGTCAAAAAGGGAAATTGAGAGAT
505419 GACTTTTTTACATCCATTTATGAATATTAAAATATAATTAAAGGAGTGGCATGGAGGTAAAAATA
195 GACTTTTTTACATCCATTTATGAATATTAAAATATAATTAAAGGAGTGGCATGGAGGTAAAAATA
505484 GGGAT
260 GGGAT
505489 TCATTAAGGG
Statistics
Matches: 259, Mismatches: 3, Indels: 10
0.95 0.01 0.04
Matches are distributed among these distances:
263 100 0.39
269 1 0.00
271 104 0.40
272 54 0.21
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.34
Consensus pattern (264 bp):
AATCAGATAATCGGATTAAACCAGAATTTTACGAAAATTTGAAGGATGTTATAAAATGGTTGAAA
ATATTATTTTCATATTTTATATCAGAGAAATTTGGCTCCTAAAATGTAATTTTTCAGATTTGATC
GAACAGTGGAATTTTAGTGACTAAAATGAAATTATTTGATTGTCAAAAAGGGAAATTGAGAGATG
ACTTTTTTACATCCATTTATGAATATTAAAATATAATTAAAGGAGTGGCATGGAGGTAAAAATAG
GGAT
Found at i:507855 original size:18 final size:18
Alignment explanation
Indices: 507832--507878 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
507822 AAATATATTT
507832 AGTTATCAAATGATTTTC
1 AGTTATCAAATGATTTTC
*
507850 AGTTATCAGATGATTTTC
1 AGTTATCAAATGATTTTC
507868 AGTTATCAAAT
1 AGTTATCAAAT
507879 AATTACAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.43
Consensus pattern (18 bp):
AGTTATCAAATGATTTTC
Found at i:508066 original size:41 final size:41
Alignment explanation
Indices: 508009--508171 Score: 290
Period size: 41 Copynumber: 4.0 Consensus size: 41
507999 AAATGAGTAC
* *
508009 TTATCAGTTTAGCTTTGGTACATTCGTGTATCAATGTTCAG
1 TTATCAGTTCAACTTTGGTACATTCGTGTATCAATGTTCAG
508050 TTATCAGTTCAACTTTGGTACATTCGTGTATCAATGTTCAG
1 TTATCAGTTCAACTTTGGTACATTCGTGTATCAATGTTCAG
* *
508091 TTATCAGTTCAGCTTTGGTACATTCGTGTATCAATTTTCAG
1 TTATCAGTTCAACTTTGGTACATTCGTGTATCAATGTTCAG
508132 TTATCAGTTCAACTTTGGTACATTCGTGTATCAATGTTCA
1 TTATCAGTTCAACTTTGGTACATTCGTGTATCAATGTTCA
508172 ACACCGTTTG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 116 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (41 bp):
TTATCAGTTCAACTTTGGTACATTCGTGTATCAATGTTCAG
Found at i:514897 original size:17 final size:18
Alignment explanation
Indices: 514877--514915 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
514867 ACCTTGAAAT
514877 AAAATAAAAT-AATAAGA
1 AAAATAAAATAAATAAGA
* *
514894 AAAATAAATTAAATAATA
1 AAAATAAAATAAATAAGA
514912 AAAA
1 AAAA
514916 GACTGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (18 bp):
AAAATAAAATAAATAAGA
Found at i:516756 original size:19 final size:18
Alignment explanation
Indices: 516732--516786 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 18
516722 TAAAACAGTG
* *
516732 TAATAATACTAATTAATAT
1 TAATAATAATAA-TAATAC
516751 TAATAATAAATAATAATAC
1 TAATAAT-AATAATAATAC
516770 TAATAATAATAATAATA
1 TAATAATAATAATAATA
516787 AATTAACCCG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 10 0.30
19 19 0.58
20 4 0.12
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (18 bp):
TAATAATAATAATAATAC
Found at i:516757 original size:3 final size:3
Alignment explanation
Indices: 516732--516787 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
516722 TAAAACAGTG
* * *
516732 TAA TAA TAC TAA TTAA TAT TAA TAA TAAA TAA TAA TAC TAA TAA TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
516779 TAA TAA TAA
1 TAA TAA TAA
516788 ATTAACCCGG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:517446 original size:40 final size:41
Alignment explanation
Indices: 517246--517448 Score: 137
Period size: 40 Copynumber: 4.8 Consensus size: 41
517236 TATCAATGAT
* ** *
517246 TGACACAGTTCCTACGTGATGAGGAAATCAGGTCAGA-TGA
1 TGACACGGTTCCTACGTGATGAGGACGTCAGGTCTGAGTGA
* * *
517286 TGACACGGTTCCTACGTGATGACGACGGCAGGCCATCTAAAGGTGA
1 TGACACGGTTCCTACGTGATGAGGACGTCAGG---TCT-GA-GTGA
* * * *
517332 TAACACGGTTCCTACGTGATGAGGACGGT-TGGTTATCTGGGT-T
1 TGACACGGTTCCTACGTGATGAGGAC-GTCAGG---TCTGAGTGA
* * * *
517375 TGACATGGCTCCTACATGATGA-GAAGATCAGGTC-GAGTGA
1 TGACACGGTTCCTACGTGATGAGGACG-TCAGGTCTGAGTGA
*
517415 TGACACGATTCCTACGTGATGAGGACGTCAGGTC
1 TGACACGGTTCCTACGTGATGAGGACGTCAGGTC
517449 ATCTATAGGT
Statistics
Matches: 123, Mismatches: 29, Indels: 22
0.71 0.17 0.13
Matches are distributed among these distances:
39 3 0.02
40 54 0.44
41 4 0.03
42 3 0.02
43 22 0.18
44 3 0.02
46 33 0.27
47 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (41 bp):
TGACACGGTTCCTACGTGATGAGGACGTCAGGTCTGAGTGA
Found at i:517500 original size:129 final size:128
Alignment explanation
Indices: 517072--517497 Score: 455
Period size: 129 Copynumber: 3.3 Consensus size: 128
517062 TAGGAAGGGG
* * * *
517072 GATAACTCGGTTCCTACATGATAAGGATTGTTGGTTATCAAAGGTTGACACGGCTCCTACATGAT
1 GATAACACGGTTCCTACGTGATGAGGAATGTTGGTTATC-AAGGTTGACACGGCTCCTACATGAT
* * * * * * * *
517137 GAGGAGATTAGGTCGGGTGATGTCATGACTCATACGTGATGAAGA-GTTCTGGCCATCTAAAGGT
65 GAGAAGATCAGGTCGAGTGATGACACGATTCCTACGTGATGAAGACG-TCAGGCCATCTAAAGGT
* * * * * * * *
517201 GATAACACGGCTCATACGTGATGAAGAGT-TATGGTTATCAATGATTGACACAGTTCCTACGTGA
1 GATAACACGGTTCCTACGTGATGAGGAATGT-TGGTTATCAA-GGTTGACACGGCTCCTACATGA
* * *
517265 TGAGGAA-ATCAGGTC-AGATGATGACACGGTTCCTACGTGATGACGACGGCAGGCCATCTAAAG
64 TGA-GAAGATCAGGTCGAG-TGATGACACGATTCCTACGTGATGAAGACGTCAGGCCATCTAAAG
517328 GT
127 GT
** ** *
517330 GATAACACGGTTCCTACGTGATGAGGACGGTTGGTTATCTGGGTTTGACATGGCTCCTACATGAT
1 GATAACACGGTTCCTACGTGATGAGGAATGTTGGTTATCAAGG-TTGACACGGCTCCTACATGAT
* * *
517395 GAGAAGATCAGGTCGAGTGATGACACGATTCCTACGTGATGAGGACGTCAGGTCATCTATAGGT
65 GAGAAGATCAGGTCGAGTGATGACACGATTCCTACGTGATGAAGACGTCAGGCCATCTAAAGGT
** *
517459 GATAATTCGGTTCCTACGTGATGAGGAATGCTGGTTATC
1 GATAACACGGTTCCTACGTGATGAGGAATGTTGGTTATC
517498 TGGAATGACA
Statistics
Matches: 244, Mismatches: 44, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
128 8 0.03
129 230 0.94
130 6 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (128 bp):
GATAACACGGTTCCTACGTGATGAGGAATGTTGGTTATCAAGGTTGACACGGCTCCTACATGATG
AGAAGATCAGGTCGAGTGATGACACGATTCCTACGTGATGAAGACGTCAGGCCATCTAAAGGT
Found at i:519554 original size:41 final size:40
Alignment explanation
Indices: 519466--519558 Score: 100
Period size: 41 Copynumber: 2.2 Consensus size: 40
519456 TTGATGTGAG
* *
519466 CTTTCAAAATGCCCCACATGGATCATTTCTAGTTGAAATGGG
1 CTTTCAAAATGCCCCACAT-G-TCATTTCTAGTTGAAATAGA
*
519508 TTTTCAAAATGCCCCAACAT-TCTATTTCT-GATTGAAATAGA
1 CTTTCAAAATGCCCC-ACATGTC-ATTTCTAG-TTGAAATAGA
519549 CTTTCAAAAT
1 CTTTCAAAAT
519559 ATTCCAACCT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
40 3 0.07
41 23 0.52
42 14 0.32
43 4 0.09
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34
Consensus pattern (40 bp):
CTTTCAAAATGCCCCACATGTCATTTCTAGTTGAAATAGA
Found at i:519646 original size:51 final size:51
Alignment explanation
Indices: 519567--519812 Score: 402
Period size: 51 Copynumber: 4.8 Consensus size: 51
519557 ATATTCCAAC
*
519567 CTTTTCATGCTGATGTGAGCCTTCAAGATGCCCCACATGGATTACTTCTGT
1 CTTTTCATGCTGATGTGAGCCTTCAAGATGCCCCACATGGATTACTTCTAT
* * *
519618 CTTTTCATGCTGATGTGAGCTTTTAAGATGCCCTACATGGATTACTTCTAT
1 CTTTTCATGCTGATGTGAGCCTTCAAGATGCCCCACATGGATTACTTCTAT
* *
519669 CTTTTTATGCTGATGTGAGCCTTCAAGATGCTCCACATGGATTACTTCTAT
1 CTTTTCATGCTGATGTGAGCCTTCAAGATGCCCCACATGGATTACTTCTAT
* *
519720 ATTTTCATGCTGATGTGAGCCTTCAAGATGCCCCATATGGATTACTTCTAT
1 CTTTTCATGCTGATGTGAGCCTTCAAGATGCCCCACATGGATTACTTCTAT
* *
519771 CTTTTCATGCTGATGTGAGCCTTCAAGATACCCTACATGGAT
1 CTTTTCATGCTGATGTGAGCCTTCAAGATGCCCCACATGGAT
519813 AATATGAACC
Statistics
Matches: 178, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 178 1.00
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (51 bp):
CTTTTCATGCTGATGTGAGCCTTCAAGATGCCCCACATGGATTACTTCTAT
Found at i:521135 original size:1 final size:1
Alignment explanation
Indices: 521121--521201 Score: 72
Period size: 1 Copynumber: 81.0 Consensus size: 1
521111 ATTCAATTTC
* * * * * * * *
521121 TTTTTTATTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTCTCTTTCTTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
521186 CTTTTTTCTTTTTTTT
1 TTTTTTTTTTTTTTTT
521202 CCTGATAGAT
Statistics
Matches: 60, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.01, C:0.11, G:0.00, T:0.88
Consensus pattern (1 bp):
T
Found at i:521137 original size:11 final size:10
Alignment explanation
Indices: 521117--521201 Score: 91
Period size: 10 Copynumber: 8.2 Consensus size: 10
521107 CTTGATTCAA
521117 TTTCTTTTTT
1 TTTCTTTTTT
*
521127 ATTCTTTTTT
1 TTTCTTTTTT
*
521137 TCT-TTTTTT
1 TTTCTTTTTT
521146 TTTCTTTTTTT
1 TTTC-TTTTTT
*
521157 TTTTTTTTTT
1 TTTCTTTTTT
*
521167 TTTCTCTTTCT
1 TTTCT-TTTTT
521178 TTTCTTTTCTTT
1 TTTC-TTT-TTT
521190 TTTCTTTTTT
1 TTTCTTTTTT
521200 TT
1 TT
521202 CCTGATAGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
9 8 0.13
10 25 0.40
11 22 0.35
12 7 0.11
ACGTcount: A:0.01, C:0.12, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:521147 original size:21 final size:20
Alignment explanation
Indices: 521121--521200 Score: 97
Period size: 21 Copynumber: 3.9 Consensus size: 20
521111 ATTCAATTTC
*
521121 TTTTTTATTCTTTTTTTCTT
1 TTTTTTTTTCTTTTTTTCTT
* *
521141 TTTTTTTTCTTTTTTTTTTTT
1 TTTTTTTT-TCTTTTTTTCTT
521162 TTTTTTTTCTCTTTCTTTTCTT
1 TTTTTTTT-TCTTT-TTTTCTT
*
521184 TTCTTTTTTCTTTTTTT
1 TTTTTTTTTCTTTTTTT
521201 TCCTGATAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.21
21 28 0.54
22 13 0.25
ACGTcount: A:0.01, C:0.11, G:0.00, T:0.88
Consensus pattern (20 bp):
TTTTTTTTTCTTTTTTTCTT
Found at i:521201 original size:21 final size:22
Alignment explanation
Indices: 521117--521202 Score: 106
Period size: 23 Copynumber: 4.0 Consensus size: 22
521107 CTTGATTCAA
*
521117 TTTCTTTTTTATTCTTTTTTTCT
1 TTTCTTTTTT-CTCTTTTTTTCT
*
521140 TTT-TTTTTTCT-TTTTTTTTT
1 TTTCTTTTTTCTCTTTTTTTCT
*
521160 TTTTTTTTTTCTCTTTCTTTTCT
1 TTTCTTTTTTCTCTTT-TTTTCT
521183 TTTCTTTTTTCT-TTTTTTTC
1 TTTCTTTTTTCTCTTTTTTTC
521203 CTGATAGATG
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
20 11 0.20
21 14 0.25
22 12 0.21
23 19 0.34
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (22 bp):
TTTCTTTTTTCTCTTTTTTTCT
Found at i:528567 original size:3 final size:3
Alignment explanation
Indices: 528544--528623 Score: 135
Period size: 3 Copynumber: 26.7 Consensus size: 3
528534 TAAAACAGTG
*
528544 TAA TAA TAC TAA TTAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
528589 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
528624 TTTAAACCGG
Statistics
Matches: 73, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
2 2 0.03
3 68 0.93
4 3 0.04
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:530376 original size:14 final size:14
Alignment explanation
Indices: 530340--530448 Score: 67
Period size: 14 Copynumber: 7.9 Consensus size: 14
530330 GATTACACCC
*
530340 TAAACCTTAAACT-
1 TAAACCCTAAACTA
*
530353 TAAGCCCTAAACTA
1 TAAACCCTAAACTA
*
530367 TAAACCCTAAAGTA
1 TAAACCCTAAACTA
* ** *
530381 TATATTCTAAACCA
1 TAAACCCTAAACTA
*
530395 TAAACCCTAAAGTA
1 TAAACCCTAAACTA
* ** **
530409 TACATTCTAAACCC
1 TAAACCCTAAACTA
**
530423 TAAACCCTAAACCC
1 TAAACCCTAAACTA
*
530437 TAAATCCTAAAC
1 TAAACCCTAAAC
530449 CCTTAATCCA
Statistics
Matches: 71, Mismatches: 24, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
13 11 0.15
14 60 0.85
ACGTcount: A:0.45, C:0.28, G:0.03, T:0.25
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:530397 original size:28 final size:28
Alignment explanation
Indices: 530359--530433 Score: 123
Period size: 28 Copynumber: 2.7 Consensus size: 28
530349 AACTTAAGCC
* *
530359 CTAAACTATAAACCCTAAAGTATATATT
1 CTAAACCATAAACCCTAAAGTATACATT
530387 CTAAACCATAAACCCTAAAGTATACATT
1 CTAAACCATAAACCCTAAAGTATACATT
*
530415 CTAAACCCTAAACCCTAAA
1 CTAAACCATAAACCCTAAA
530434 CCCTAAATCC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.47, C:0.25, G:0.03, T:0.25
Consensus pattern (28 bp):
CTAAACCATAAACCCTAAAGTATACATT
Found at i:530427 original size:7 final size:7
Alignment explanation
Indices: 530415--530451 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
530405 AGTATACATT
530415 CTAAACC
1 CTAAACC
530422 CTAAACC
1 CTAAACC
530429 CTAAACC
1 CTAAACC
*
530436 CTAAATC
1 CTAAACC
530443 CTAAACC
1 CTAAACC
530450 CT
1 CT
530452 TAATCCAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:530446 original size:28 final size:28
Alignment explanation
Indices: 530336--530451 Score: 81
Period size: 28 Copynumber: 4.2 Consensus size: 28
530326 GTTAGATTAC
* * **
530336 ACCCTAAACCTTAAA-CTTAAGCCCTAA
1 ACCCTAAACCCTAAACCATAAATCCTAA
** ** * *
530363 ACTATAAACCCTAAAGTATATATTCTAA
1 ACCCTAAACCCTAAACCATAAATCCTAA
* ** * *
530391 ACCATAAACCCTAAAGTATACATTCTAA
1 ACCCTAAACCCTAAACCATAAATCCTAA
*
530419 ACCCTAAACCCTAAACCCTAAATCCTAA
1 ACCCTAAACCCTAAACCATAAATCCTAA
530447 ACCCT
1 ACCCT
530452 TAATCCAATT
Statistics
Matches: 71, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
27 12 0.17
28 59 0.83
ACGTcount: A:0.43, C:0.30, G:0.03, T:0.24
Consensus pattern (28 bp):
ACCCTAAACCCTAAACCATAAATCCTAA
Found at i:530449 original size:14 final size:14
Alignment explanation
Indices: 530415--530457 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
530405 AGTATACATT
*
530415 CTAAACCCTAAACC
1 CTAAACCCTAAATC
530429 CTAAACCCTAAATC
1 CTAAACCCTAAATC
*
530443 CTAAACCCTTAATC
1 CTAAACCCTAAATC
530457 C
1 C
530458 AATTATGTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.21
Consensus pattern (14 bp):
CTAAACCCTAAATC
Found at i:530552 original size:21 final size:21
Alignment explanation
Indices: 530526--530598 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
530516 GATTACACCC
*
530526 TAAACTATAAACTATAAACTA
1 TAAACTATAAACTATAAACCA
530547 TAAACTATAAACTATAAACCA
1 TAAACTATAAACTATAAACCA
* *
530568 TAAACCT-TAAATCT-CAAACCC
1 TAAA-CTATAAA-CTATAAACCA
530589 TAAACTATAA
1 TAAACTATAA
530599 GCCCTAACTA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
20 2 0.04
21 40 0.87
22 4 0.09
ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAACTATAAACTATAAACCA
Found at i:530573 original size:7 final size:7
Alignment explanation
Indices: 530526--530572 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
530516 GATTACACCC
530526 TAAACTA
1 TAAACTA
530533 TAAACTA
1 TAAACTA
530540 TAAACTA
1 TAAACTA
530547 TAAACTA
1 TAAACTA
530554 TAAACTA
1 TAAACTA
*
530561 TAAACCA
1 TAAACTA
530568 TAAAC
1 TAAAC
530573 CTTAAATCTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.26
Consensus pattern (7 bp):
TAAACTA
Found at i:530603 original size:14 final size:14
Alignment explanation
Indices: 530533--530618 Score: 77
Period size: 14 Copynumber: 6.2 Consensus size: 14
530523 CCCTAAACTA
**
530533 TAAACTATAAACTA
1 TAAACTATAAACCC
**
530547 TAAACTATAAACTA
1 TAAACTATAAACCC
* *
530561 TAAACCATAAACCT
1 TAAACTATAAACCC
*
530575 TAAATCT-CAAACCC
1 TAAA-CTATAAACCC
*
530589 TAAACTATAAGCCC
1 TAAACTATAAACCC
530603 T-AACTATAAACCC
1 TAAACTATAAACCC
530616 TAA
1 TAA
530619 GACCTAAGCT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
13 14 0.23
14 45 0.75
15 1 0.02
ACGTcount: A:0.50, C:0.24, G:0.01, T:0.24
Consensus pattern (14 bp):
TAAACTATAAACCC
Found at i:530609 original size:13 final size:13
Alignment explanation
Indices: 530583--530618 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
530573 CTTAAATCTC
530583 AAACCCTAAACTAT
1 AAACCCT-AACTAT
*
530597 AAGCCCTAACTAT
1 AAACCCTAACTAT
530610 AAACCCTAA
1 AAACCCTAA
530619 GACCTAAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.47, C:0.31, G:0.03, T:0.19
Consensus pattern (13 bp):
AAACCCTAACTAT
Found at i:530615 original size:186 final size:189
Alignment explanation
Indices: 530287--530664 Score: 441
Period size: 186 Copynumber: 2.0 Consensus size: 189
530277 CGTTGTATAT
*
530287 TACTAAAAGAAAAATAAAAGCCCATTTAATTAAGCACATGTTAGATTACACCCTAAACCTTAAAC
1 TACTAAAAGAAAAATAAAAGCCCATTTAATTAAGCACATCTTAGATTACACCCTAAACCTTAAAC
* * * ** * * * **
530352 TTAAGCCCTAAACTATAAACCCTAAAGTATATATTCTAAACCATAAACCCTAAAGTATACATTCT
66 TTAAACCATAAACTATAAACCATAAACCATAAACTCTAAACCATAAACCCTAAACTATACACCCT
* *
530417 AAACCCTAAACCCTAA-ACC-C-TAAATCCTAAACCCTTAATC-CAATTATGTGATAGGG
131 AAACCATAAACCCTAAGACCACTTAAACCCTAAACCCTT-ATCTCAATTATGTGATAGGG
*
530473 TACTAAAAGAAAAATAAAAGCCCATTTAATTAAGCATATCTTAGATTACACCCTAAA-CTATAAA
1 TACTAAAAGAAAAATAAAAGCCCATTTAATTAAGCACATCTTAGATTACACCCTAAACCT-TAAA
* * *
530537 CTATAAACTATAAACTATAAACTATAAACCATAAAC-CTTAAATC-TCAAACCCTAAACTATA-A
65 CT-TAAACCATAAACTATAAACCATAAACCATAAACTC-TAAACCAT-AAACCCTAAACTATACA
* *
530599 GCCCT-AACTATAAACCCTAAGACCTAAGCTTAAACCCTAAACCCTTATCTCGATTATGTGATAG
127 -CCCTAAACCATAAACCCTAAGACC--A-CTTAAACCCTAAACCCTTATCTCAATTATGTGATAG
530663 GG
188 GG
530665 GTTAAGTTAT
Statistics
Matches: 161, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
185 2 0.01
186 77 0.48
187 48 0.30
191 4 0.02
192 30 0.19
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.26
Consensus pattern (189 bp):
TACTAAAAGAAAAATAAAAGCCCATTTAATTAAGCACATCTTAGATTACACCCTAAACCTTAAAC
TTAAACCATAAACTATAAACCATAAACCATAAACTCTAAACCATAAACCCTAAACTATACACCCT
AAACCATAAACCCTAAGACCACTTAAACCCTAAACCCTTATCTCAATTATGTGATAGGG
Found at i:530619 original size:20 final size:20
Alignment explanation
Indices: 530596--530643 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
530586 CCCTAAACTA
530596 TAAGCCCTAA-CTATAAACCC
1 TAAGCCCTAAGCT-TAAACCC
*
530616 TAAGACCTAAGCTTAAACCC
1 TAAGCCCTAAGCTTAAACCC
*
530636 TAAACCCT
1 TAAGCCCT
530644 TATCTCGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.40, C:0.33, G:0.06, T:0.21
Consensus pattern (20 bp):
TAAGCCCTAAGCTTAAACCC
Found at i:532362 original size:130 final size:129
Alignment explanation
Indices: 532128--532391 Score: 415
Period size: 130 Copynumber: 2.0 Consensus size: 129
532118 GAATACGAAC
* *
532128 AAGTGCCAATAGAATAGTCTCATCGAAAATCATCGCTCGATATCAGAATATTAGAATCTCAAGTT
1 AAGTGCCAAAAGAATAGTCTCATCAAAAATCATCGCTCGATATCAGAATATTAGAATCTCAAGTT
* *
532193 TTTCGATTGATTTTCATCAATTTTGAGTAGATTTCGTAAAAAATCAATTCAAGAAAAATATAATG
66 TTTCGATTGATTTTCATCAATTTTGAATAAATTTCGT-AAAAATCAATTCAAGAAAAATATAATG
* *
532258 AAGTGCCAAAAGAATAGTCTCATCAAAAATCATCG-TGCGATATCAGAATATTGGAATTTCAA-T
1 AAGTGCCAAAAGAATAGTCTCATCAAAAATCATCGCT-CGATATCAGAATATTAGAATCTCAAGT
* *
532321 CTTTTCGATTGATTTTCATTAATTTTGAATAAATTTTGTAAAAATCAATTCAAGAAAAATATAAT
65 -TTTTCGATTGATTTTCATCAATTTTGAATAAATTTCGTAAAAATCAATTCAAGAAAAATATAAT
532386 G
129 G
532387 AAGTG
1 AAGTG
532392 AAGTGAAATA
Statistics
Matches: 124, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
129 34 0.27
130 90 0.73
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (129 bp):
AAGTGCCAAAAGAATAGTCTCATCAAAAATCATCGCTCGATATCAGAATATTAGAATCTCAAGTT
TTTCGATTGATTTTCATCAATTTTGAATAAATTTCGTAAAAATCAATTCAAGAAAAATATAATG
Found at i:537173 original size:21 final size:21
Alignment explanation
Indices: 537147--537189 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
537137 TTTCTGGGTT
* *
537147 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
537168 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
537189 A
1 A
537190 CGAATATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:537301 original size:67 final size:68
Alignment explanation
Indices: 537169--537320 Score: 182
Period size: 68 Copynumber: 2.2 Consensus size: 68
537159 ACCCATTCAA
* * ** * * *
537169 GGGGAACCGATACCCCTTCAACGAATATGTTTTCCAGAATGCTAGAGGGGAATCGGTACCCCCA-
1 GGGGAACCGATACCCCCTCAACGAATAAGAATTCCAGAAGGCTAGAGGGGAACCGATACCCCCAG
537233 GGG
66 GGG
* * *
537236 GGGGAACCGATACCCCCTCATCGTATAAGAAATTCCAGAAGGCTATAGGGGAACCGATA-CCCCA
1 GGGGAACCGATACCCCCTCAACGAATAAG-AATTCCAGAAGGCTAGAGGGGAACCGATACCCCCA
537300 GGGG
65 GGGG
*
537304 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
537321 ATGAGAAAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 30 0.42
68 42 0.58
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.16
Consensus pattern (68 bp):
GGGGAACCGATACCCCCTCAACGAATAAGAATTCCAGAAGGCTAGAGGGGAACCGATACCCCCAG
GGG
Found at i:537677 original size:28 final size:28
Alignment explanation
Indices: 537623--537693 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
537613 CATATTATGA
*
537623 TACATGACATGAAATTGTATTAAATGTAT
1 TACATGACATG-AATTATATTAAATGTAT
*
537652 TACATGACATGAATTATATTATATGTAT
1 TACATGACATGAATTATATTAAATGTAT
537680 TACATGACATGAAT
1 TACATGACATGAAT
537694 ATGCAGAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 29 0.73
29 11 0.28
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (28 bp):
TACATGACATGAATTATATTAAATGTAT
Found at i:537749 original size:30 final size:31
Alignment explanation
Indices: 537707--537766 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
537697 CAGAAAAGTT
*
537707 ATATGCACTATGTGATAAAGGTATGTAAATG
1 ATATGCACTATGTGATAAAGGTATGAAAATG
*
537738 ATATGC-CTATGTGTTAAAGGTATGAAAAT
1 ATATGCACTATGTGATAAAGGTATGAAAAT
537767 ACTATGTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (31 bp):
ATATGCACTATGTGATAAAGGTATGAAAATG
Found at i:538014 original size:22 final size:22
Alignment explanation
Indices: 537986--538060 Score: 141
Period size: 22 Copynumber: 3.4 Consensus size: 22
537976 TTATGGACAA
537986 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
538008 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
538030 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
*
538052 AATTATACG
1 AATTCTACG
538061 AGCTGTGGTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.28
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:544113 original size:21 final size:21
Alignment explanation
Indices: 544087--544129 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
544077 TTTCTGGGTT
* *
544087 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
544108 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
544129 A
1 A
544130 CGAATATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:544241 original size:67 final size:68
Alignment explanation
Indices: 544109--544260 Score: 182
Period size: 68 Copynumber: 2.2 Consensus size: 68
544099 ACCCATTCAA
* * ** * * *
544109 GGGGAACCGATACCCCTTCAACGAATATGTTTTCCAGAATGCTAGAGGGGAATCGGTACCCCCA-
1 GGGGAACCGATACCCCCTCAACGAATAAGAATTCCAGAAGGCTAGAGGGGAACCGATACCCCCAG
544173 GGG
66 GGG
* * *
544176 GGGGAACCGATACCCCCTCATCGTATAAGAAATTCCAGAAGGCTATAGGGGAACCGATA-CCCCA
1 GGGGAACCGATACCCCCTCAACGAATAAG-AATTCCAGAAGGCTAGAGGGGAACCGATACCCCCA
544240 GGGG
65 GGGG
*
544244 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
544261 ATGAGAAAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 30 0.42
68 42 0.58
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.16
Consensus pattern (68 bp):
GGGGAACCGATACCCCCTCAACGAATAAGAATTCCAGAAGGCTAGAGGGGAACCGATACCCCCAG
GGG
Found at i:544616 original size:28 final size:28
Alignment explanation
Indices: 544562--544632 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
544552 CATATTATGA
*
544562 TACATGACATGAAATTGTATTAAATGTAT
1 TACATGACATG-AATTATATTAAATGTAT
*
544591 TACATGACATGAATTATATTATATGTAT
1 TACATGACATGAATTATATTAAATGTAT
544619 TACATGACATGAAT
1 TACATGACATGAAT
544633 ATGCAGAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 29 0.73
29 11 0.28
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (28 bp):
TACATGACATGAATTATATTAAATGTAT
Found at i:544688 original size:30 final size:31
Alignment explanation
Indices: 544646--544705 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
544636 CAGAAAAGTT
*
544646 ATATGCACTATGTGATAAAGGTATGTAAATG
1 ATATGCACTATGTGATAAAGGTATGAAAATG
*
544677 ATATGC-CTATGTGTTAAAGGTATGAAAAT
1 ATATGCACTATGTGATAAAGGTATGAAAAT
544706 ACTATGTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (31 bp):
ATATGCACTATGTGATAAAGGTATGAAAATG
Found at i:544953 original size:22 final size:22
Alignment explanation
Indices: 544925--544999 Score: 132
Period size: 22 Copynumber: 3.4 Consensus size: 22
544915 TTATGGACAA
544925 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
*
544947 AATTCTATGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
544969 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
*
544991 AATTATACG
1 AATTCTACG
545000 AGCTGTGGTG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.29
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:547913 original size:31 final size:31
Alignment explanation
Indices: 547826--547956 Score: 142
Period size: 31 Copynumber: 4.2 Consensus size: 31
547816 AGAGTCGAGG
*
547826 GTATACCTGTGTTCTACGGAACATATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
* *
547857 GAATTACCTATG-TCTTTC-GAGACATATGGACA
1 GTA-TACCTATGTTC-TACGGA-ACATATGGACA
*
547889 GTATACCTATGTTCTAAGGAACATATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
* * * *
547920 ATTTACCTAGGTTCTACGGAACCTATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
547951 GT-TACC
1 GTATACC
547957 GAGGATCTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
30 4 0.05
31 53 0.64
32 26 0.31
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30
Consensus pattern (31 bp):
GTATACCTATGTTCTACGGAACATATGGACA
Found at i:547984 original size:30 final size:30
Alignment explanation
Indices: 547940--548011 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
547930 GTTCTACGGA
* *
547940 ACCTATGGACAGTTACCGAGGATCTTTATG
1 ACCTCTGGATAGTTACCGAGGATCTTTATG
547970 ACCTCTGGATAGTTACCGAGGATCTTTATG
1 ACCTCTGGATAGTTACCGAGGATCTTTATG
548000 ACCTCTGGATAG
1 ACCTCTGGATAG
548012 GTCCTTCGGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (30 bp):
ACCTCTGGATAGTTACCGAGGATCTTTATG
Found at i:554204 original size:31 final size:31
Alignment explanation
Indices: 554169--554272 Score: 165
Period size: 31 Copynumber: 3.4 Consensus size: 31
554159 ACATAAACCG
* *
554169 AGTGACCATATCT-TAATTAAATAAAAACGAA
1 AGTGACCATAT-TATAATGAAATGAAAACGAA
554200 AGTGACCATATTATAATGAAATGAAAACGAA
1 AGTGACCATATTATAATGAAATGAAAACGAA
554231 AGTGACCATATTATAATGAAATGAAAACGAA
1 AGTGACCATATTATAATGAAATGAAAACGAA
*
554262 AGTTACCATAT
1 AGTGACCATAT
554273 ATTATATTTT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
30 1 0.01
31 68 0.99
ACGTcount: A:0.50, C:0.12, G:0.13, T:0.25
Consensus pattern (31 bp):
AGTGACCATATTATAATGAAATGAAAACGAA
Found at i:555992 original size:39 final size:39
Alignment explanation
Indices: 555940--556039 Score: 173
Period size: 39 Copynumber: 2.5 Consensus size: 39
555930 GGGCCCATCA
*
555940 TTTTTAATCTTATTTTTTATATTTATAATTAAGGTTATT
1 TTTTTAATTTTATTTTTTATATTTATAATTAAGGTTATT
555979 TTTTTAATTTTATTTTTTATATTTATAATTAAGGTTATT
1 TTTTTAATTTTATTTTTTATATTTATAATTAAGGTTATT
556018 TATTTTCAATTTTATTTTTTAT
1 T-TTTT-AATTTTATTTTTTAT
556040 CTTATGATCG
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
39 39 0.67
40 4 0.07
41 15 0.26
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (39 bp):
TTTTTAATTTTATTTTTTATATTTATAATTAAGGTTATT
Found at i:556135 original size:42 final size:43
Alignment explanation
Indices: 556089--556241 Score: 113
Period size: 42 Copynumber: 3.6 Consensus size: 43
556079 TTTTATTTTC
*
556089 ATAATTGAGGTC-TCT-ATTTTTTTAATCTAACTTTTTACATTT
1 ATAATTGAGGTCATCTAATTTTTTTAATCT-ACTTTTTACCTTT
* * * * *
556131 ATAATTG-TGCCTTTTAATTTTTTTTCAATCCTACTTTTTACCTAT
1 ATAATTGAGGTCATCTAA-TTTTTTT-AAT-CTACTTTTTACCTTT
* * * *
556176 ATAAATGAGG-CATTTAA-TTTTATAATATTACTTTTTACCTTT
1 ATAATTGAGGTCATCTAATTTTTTTAAT-CTACTTTTTACCTTT
*
556218 ATAATTGAAGTC--CTAATTTTTTTA
1 ATAATTGAGGTCATCTAATTTTTTTA
556242 GTTTCACTTC
Statistics
Matches: 87, Mismatches: 16, Indels: 16
0.73 0.13 0.13
Matches are distributed among these distances:
41 5 0.06
42 39 0.45
43 7 0.08
44 7 0.08
45 26 0.30
46 3 0.03
ACGTcount: A:0.28, C:0.12, G:0.07, T:0.53
Consensus pattern (43 bp):
ATAATTGAGGTCATCTAATTTTTTTAATCTACTTTTTACCTTT
Found at i:562886 original size:13 final size:13
Alignment explanation
Indices: 562870--562905 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
562860 AGGAAAGAAA
562870 AAAAAGTTAAAAT
1 AAAAAGTTAAAAT
*
562883 AAAAAATTAAAAT
1 AAAAAGTTAAAAT
*
562896 TAAAAGTTAA
1 AAAAAGTTAA
562906 CTTAAAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (13 bp):
AAAAAGTTAAAAT
Found at i:563275 original size:6 final size:6
Alignment explanation
Indices: 563264--563301 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
563254 TGACCGAAAC
563264 AATAAA AATAAA AATAAA AATAAA AAT--A AATAAA AATA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATA
563302 TTATCAGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.13
6 26 0.87
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:564436 original size:199 final size:199
Alignment explanation
Indices: 564083--564731 Score: 683
Period size: 200 Copynumber: 3.3 Consensus size: 199
564073 TCGTGGAGTT
* * * ***
564083 GAACTTTAAAGCTTTGAGT-GACATATAGCTCTTCTT--AACTTAAGCTATG-CAAAATATGGGT
1 GAACTTGAAAGCTTTG-GTAGACAGATAGCTCTT-TTCGAA-TTAAGCTATGTCGAAATAT-AAC
** * * *
564144 TGGGAAGTGGTTCTTTGTTGTAAAATCGCAACCAACCTGAGCATTCTTCTTGGCTTAAAGACCTT
62 TGGGAAGTGGTTCTTTGTTGCCAAATCGCAACCAACTTGGGCCTTCTTCTTGGCTTAAAGACCTT
** *
564209 AGTTTGAATTTTGACCGAAAAATAGTTCCTCGTTACTA-CTTGCGGTCAATGTGCTCTTGAGTTG
127 AGTTTGAATTTTGACCG-AAGGTAGTTCCTCGTTACTACCATGCGGTCAATGTGCTCTTGAGTTG
564273 AGTGGAATC
191 AGTGGAATC
* * ** * *
564282 GAACTTGAAAGCTTTGGTCGATAGATAGCTCTTTTCGGCTTAAGCTATGTCGAAATCTGACTGGG
1 GAACTTGAAAGCTTTGGTAGACAGATAGCTCTTTTCGAATTAAGCTATGTCGAAATATAACTGGG
*
564347 AAGTGGTTCTTTGTTGCCAAACCGCAACCAACTTGGGCCCTT-TTCTTGGCTTAAAGACCTTAGT
66 AAGTGGTTCTTTGTTGCCAAATCGCAACCAACTTGGG-CCTTCTTCTTGGCTTAAAGACCTTAGT
* * * *
564411 TTGAATTTTAACATGAAGGTAGTTCCTTGTTACTACCATGCGGTCAATGTGCTCTTAAGTTGAGT
130 TTGAATTTTGAC-CGAAGGTAGTTCCTCGTTACTACCATGCGGTCAATGTGCTCTTGAGTTGAGT
564476 GGAATC
194 GGAATC
* * * * *
564482 GAACTTGAAAGTTTTGGTAGGCAGATAGCTCTTCTT--AATTTAAGTTATGTTGAAATATAATTG
1 GAACTTGAAAGCTTTGGTAGACAGATAGCTCTT-TTCGAA-TTAAGCTATGTCGAAATATAACTG
* * * * * * * * * *
564545 AGAAGTGGTTCATTGTTTCCAAGTCACAACTAACTTGGGTCTTCTTATCT-GATTAAAGACCTTG
64 GGAAGTGGTTCTTTGTTGCCAAATCGCAACCAACTTGGGCCTTCTTCT-TGGCTTAAAGACCTTA
**
564609 GTTTGAATTTTGACCGATAGGTAGTTATTCGTTGA-TACCATGCGGTCAATGTGCT-TTCGAGTT
128 GTTTGAATTTTGACCGA-AGGTAGTTCCTCGTT-ACTACCATGCGGTCAATGTGCTCTT-GAGTT
* *
564672 GAATTGAATC
190 GAGTGGAATC
*
564682 GAACTTGAAAGCTTTGGTTA-ACAGATAGCTCTTCTCGAATTAAGCTATGT
1 GAACTTGAAAGCTTTGG-TAGACAGATAGCTCTTTTCGAATTAAGCTATGT
564732 TGTAAATGAT
Statistics
Matches: 377, Mismatches: 56, Indels: 33
0.81 0.12 0.07
Matches are distributed among these distances:
198 4 0.01
199 132 0.35
200 233 0.62
201 8 0.02
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.35
Consensus pattern (199 bp):
GAACTTGAAAGCTTTGGTAGACAGATAGCTCTTTTCGAATTAAGCTATGTCGAAATATAACTGGG
AAGTGGTTCTTTGTTGCCAAATCGCAACCAACTTGGGCCTTCTTCTTGGCTTAAAGACCTTAGTT
TGAATTTTGACCGAAGGTAGTTCCTCGTTACTACCATGCGGTCAATGTGCTCTTGAGTTGAGTGG
AATC
Found at i:565108 original size:114 final size:112
Alignment explanation
Indices: 564807--565148 Score: 328
Period size: 115 Copynumber: 3.0 Consensus size: 112
564797 AGACGATTCC
* * * * *
564807 CCTTCGCGGTTTAAGTCAGTTTTGATTTTTTGGATAACTCCCCTTCGTGGGTCTAAGTCAAGTGA
1 CCTTCACGATTTAAG-CAGTATTGATTATTTGGATGACTCCCCTTCGTGGGTCTAAGTCAAGTGA
* * * * * * *
564872 GACGTCTTTCCTTCATGG-TTCAAGCCAATCTTGATTCTTTGGATGAATCC
65 GACGAC--TCCTT-TTGGATTTAAGACAGTCTTGATTCTTTGGATGACTCA
* * * *
564922 CCTTCACGATTTAAGCCGATATTGATTCTTTGGATTG-CTCCCCTTAGCGGGTCTAAGTCAAGTG
1 CCTTCACGATTTAAGCAG-TATTGATTATTTGGA-TGACTCCCCTTCGTGGGTCTAAGTCAAGTG
*
564986 AGATGACTCCCTTTTGTGATTTAAGACAGTCTTGATTCTTTGGATGACTCA
64 AGACGACT-CCTTTTG-GATTTAAGACAGTCTTGATTCTTTGGATGACTCA
* * * * * *
565037 TCTTCACGATTTAAGCAGTCTTGATTATTTGGATGACTCCCTTTCGTAGGTCTGAGTCAAGCGAG
1 CCTTCACGATTTAAGCAGTATTGATTATTTGGATGACTCCCCTTCGTGGGTCTAAGTCAAGTGAG
* *** *
565102 ACGACTCCTCTTTGCAGTTTAAGTTGGTATTGATTCTTTGGATGACT
66 ACGACTCCT-TTTGGA-TTTAAGACAGTCTTGATTCTTTGGATGACT
565149 TTTTCTTCAT
Statistics
Matches: 187, Mismatches: 32, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
113 9 0.05
114 78 0.42
115 99 0.53
116 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.38
Consensus pattern (112 bp):
CCTTCACGATTTAAGCAGTATTGATTATTTGGATGACTCCCCTTCGTGGGTCTAAGTCAAGTGAG
ACGACTCCTTTTGGATTTAAGACAGTCTTGATTCTTTGGATGACTCA
Found at i:565231 original size:37 final size:37
Alignment explanation
Indices: 565181--565259 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
565171 TGCGACATGA
*
565181 TTCTTTGAGTGACTTACTTTCGTGGGTTTAAGTAAGG
1 TTCTTTGAGTGACTTACCTTCGTGGGTTTAAGTAAGG
* *
565218 TTCTTTG-GATGACTTCCCTTCGTGGGTTTAAGTCAGG
1 TTCTTTGAG-TGACTTACCTTCGTGGGTTTAAGTAAGG
565255 TTCTT
1 TTCTT
565260 CAGATGAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.15, C:0.15, G:0.25, T:0.44
Consensus pattern (37 bp):
TTCTTTGAGTGACTTACCTTCGTGGGTTTAAGTAAGG
Found at i:569225 original size:64 final size:64
Alignment explanation
Indices: 569124--569247 Score: 153
Period size: 64 Copynumber: 1.9 Consensus size: 64
569114 CTTTAAAATA
* * *
569124 AAAATAAAAACATCGAATGTCATCAGTGTATCGATGCACAAG-TAGTGCATCGATGCACCCCCTT
1 AAAATAAAAACATCGAATGACATCAGTGTACCGATGCA-AAGATAGTGCACCGATGCACCCCCTT
* * * *
569188 AAAATACAAACATCGAATGAGATTTA-TGTACCGATGCATAGATAGTGCACCGATGCACCC
1 AAAATAAAAACATCGAATGACA-TCAGTGTACCGATGCAAAGATAGTGCACCGATGCACCC
569248 GTCAAGGGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
63 2 0.04
64 47 0.92
65 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (64 bp):
AAAATAAAAACATCGAATGACATCAGTGTACCGATGCAAAGATAGTGCACCGATGCACCCCCTT
Found at i:570317 original size:15 final size:15
Alignment explanation
Indices: 570297--570338 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
570287 TGAAATTAGG
570297 TATGTGATTATAAGA
1 TATGTGATTATAAGA
* *
570312 TATGTGATAATAAGT
1 TATGTGATTATAAGA
*
570327 TATATGATTATA
1 TATGTGATTATA
570339 TGATCATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (15 bp):
TATGTGATTATAAGA
Found at i:570833 original size:23 final size:23
Alignment explanation
Indices: 570783--570827 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
570773 TGGAACTACG
*
570783 GTGCAATTCTACGTGGCACTTCA
1 GTGCAATCCTACGTGGCACTTCA
570806 GTGCAATCCTACGTGGCACTTC
1 GTGCAATCCTACGTGGCACTTC
570828 GTTGCATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (23 bp):
GTGCAATCCTACGTGGCACTTCA
Found at i:574424 original size:25 final size:25
Alignment explanation
Indices: 574386--574434 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
574376 TCGGATAATT
*
574386 TAATCGAATATAAAAAAATCAAAATC
1 TAATCGAAAATAAAAAAAT-AAAATC
*
574412 TAATC-AAAATAAATAAATAAAAT
1 TAATCGAAAATAAAAAAATAAAAT
574435 AAAGGGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 11 0.52
26 5 0.24
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.24
Consensus pattern (25 bp):
TAATCGAAAATAAAAAAATAAAATC
Found at i:575661 original size:43 final size:42
Alignment explanation
Indices: 575575--575964 Score: 250
Period size: 43 Copynumber: 9.1 Consensus size: 42
575565 AAAAATTCCA
* * * * *
575575 CAATAGGTGTTGATATTTAGTGGCGTTTGAACAAAAAATGCCG
1 CAATAAGTGTTGATATTTAGCGGCGTTTGTA-TAAAAACGCCG
* * * *
575618 TAATAAGTGTTGATATTTAGCAGAGTTTATATAACAAACGCCG
1 CAATAAGTGTTGATATTTAGCGGCGTTTGTATAA-AAACGCCG
* * *
575661 TAATAGGTTTTGATATTTAAG-GGCGTTTGTATTAAAAACGCCG
1 CAATAAGTGTTGATATTT-AGCGGCGTTTGTA-TAAAAACGCCG
* * * *
575704 CAAT-AGTTGTTGATATTTAACGGTGTTTGTATTACAAACGCCA
1 CAATAAG-TGTTGATATTTAGCGGCGTTTGTA-TAAAAACGCCG
* *
575747 CAATAGGTTTTGATATTTAGCGGCGTTTGTAATAAAAACGCCG
1 CAATAAGTGTTGATATTTAGCGGCGTTTGT-ATAAAAACGCCG
* * * *
575790 CAAT-AGATGTTGATGTTTAGCGGCGTTTTTTTCACAAACGCCG
1 CAATAAG-TGTTGATATTTAGCGGCGTTTGTAT-AAAAACGCCG
* * * * * * ** **
575833 CAGT-GGTTATTGAGATTTAGCGGTGTTTTTATCGCAAACGTTG
1 CAATAAG-TGTTGATATTTAGCGGCGTTTGTAT-AAAAACGCCG
* * ** *
575876 CAATAAGTGTTGAAATTTAGCGGCATTT-TCCCACAAACGCCG
1 CAATAAGTGTTGATATTTAGCGGCGTTTGT-ATAAAAACGCCG
* ** *
575918 CAATAGGTGTTGAGCTTTAGCGGCGTTTGTTCATACAAACGCCG
1 CAATAAGTGTTGATATTTAGCGGCGTTTG-T-ATAAAAACGCCG
575962 CAA
1 CAA
575965 AAAGATCGCT
Statistics
Matches: 273, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
42 38 0.14
43 212 0.78
44 23 0.08
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (42 bp):
CAATAAGTGTTGATATTTAGCGGCGTTTGTATAAAAACGCCG
Done.