Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 4521124 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 File 5 of 21 Found at i:747868 original size:23 final size:23 Alignment explanation
Indices: 747818--747862 Score: 72 Period size: 23 Copynumber: 2.0 Consensus size: 23 747808 TGCCTATTTT * * 747818 ATTATATAAGCGCTACTTATTAC 1 ATTATATAAGAGCTACTTAATAC 747841 ATTATATAAGAGCTACTTAATA 1 ATTATATAAGAGCTACTTAATA 747863 TGTTATTGTA Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 23 20 1.00 ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38 Consensus pattern (23 bp): ATTATATAAGAGCTACTTAATAC Found at i:748858 original size:2 final size:2 Alignment explanation
Indices: 748851--748879 Score: 58 Period size: 2 Copynumber: 14.5 Consensus size: 2 748841 CATCAACAAT 748851 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 748880 CATTTTTCAT Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 27 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:754364 original size:49 final size:48 Alignment explanation
Indices: 754295--754393 Score: 171 Period size: 49 Copynumber: 2.0 Consensus size: 48 754285 TAGTATTTTA * * 754295 TATTAGTCCTCAAATTATGACCTCCACTATAAATTGATCCTTAAACTT 1 TATTAGTCCTCAAATTATGACCTCCACTATAAACTGATCATTAAACTT 754343 TATTCAGTCCTCAAATTATGACCTCCACTATAAACTGATCATTAAACTT 1 TATT-AGTCCTCAAATTATGACCTCCACTATAAACTGATCATTAAACTT 754392 TA 1 TA 754394 AAAATGTTTT Statistics Matches: 48, Mismatches: 2, Indels: 1 0.94 0.04 0.02 Matches are distributed among these distances: 48 4 0.08 49 44 0.92 ACGTcount: A:0.34, C:0.23, G:0.06, T:0.36 Consensus pattern (48 bp): TATTAGTCCTCAAATTATGACCTCCACTATAAACTGATCATTAAACTT Found at i:757559 original size:36 final size:35 Alignment explanation
Indices: 757515--757585 Score: 124 Period size: 36 Copynumber: 2.0 Consensus size: 35 757505 AACATCTACC * 757515 AAACTTTACTAAACTTTGAAAAACATTTTTCAAAG 1 AAACTTTACCAAACTTTGAAAAACATTTTTCAAAG 757550 AAACATTTACCAAACTTTGAAAAACATTTTTCAAAG 1 AAAC-TTTACCAAACTTTGAAAAACATTTTTCAAAG 757586 TTGGTTGCCA Statistics Matches: 34, Mismatches: 1, Indels: 1 0.94 0.03 0.03 Matches are distributed among these distances: 35 4 0.12 36 30 0.88 ACGTcount: A:0.46, C:0.15, G:0.06, T:0.32 Consensus pattern (35 bp): AAACTTTACCAAACTTTGAAAAACATTTTTCAAAG Found at i:757584 original size:21 final size:21 Alignment explanation
Indices: 757525--757584 Score: 60 Period size: 21 Copynumber: 3.1 Consensus size: 21 757515 AAACTTTACT 757525 AAACTTTGAAAAACATTTTTC 1 AAACTTTGAAAAACATTTTTC ** 757546 AAA----G--AAACATTTACC 1 AAACTTTGAAAAACATTTTTC 757561 AAACTTTGAAAAACATTTTTC 1 AAACTTTGAAAAACATTTTTC 757582 AAA 1 AAA 757585 GTTGGTTGCC Statistics Matches: 29, Mismatches: 4, Indels: 12 0.64 0.09 0.27 Matches are distributed among these distances: 15 12 0.41 17 1 0.03 19 1 0.03 21 15 0.52 ACGTcount: A:0.48, C:0.15, G:0.05, T:0.32 Consensus pattern (21 bp): AAACTTTGAAAAACATTTTTC Found at i:761286 original size:16 final size:17 Alignment explanation
Indices: 761255--761288 Score: 52 Period size: 16 Copynumber: 2.1 Consensus size: 17 761245 CGTATCGCCG * 761255 ACAAAATTTTACTATTC 1 ACAAAATTTCACTATTC 761272 ACAAAA-TTCACTATTC 1 ACAAAATTTCACTATTC 761288 A 1 A 761289 TGTGAATAGT Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 16 10 0.62 17 6 0.38 ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35 Consensus pattern (17 bp): ACAAAATTTCACTATTC Found at i:761753 original size:35 final size:35 Alignment explanation
Indices: 761696--761772 Score: 120 Period size: 35 Copynumber: 2.2 Consensus size: 35 761686 CCTATTCATA 761696 TTTTCAACAAACATCTACCAAACTTTGAAAAACAT 1 TTTTCAACAAACATCTACCAAACTTTGAAAAACAT * * 761731 TTTTCAAGGAAACATTTA-CAAACTTTGAAAAACAT 1 TTTTCAA-CAAACATCTACCAAACTTTGAAAAACAT 761766 TTTTCAA 1 TTTTCAA 761773 AGTTGGTTGC Statistics Matches: 39, Mismatches: 2, Indels: 2 0.91 0.05 0.05 Matches are distributed among these distances: 35 31 0.79 36 8 0.21 ACGTcount: A:0.44, C:0.18, G:0.05, T:0.32 Consensus pattern (35 bp): TTTTCAACAAACATCTACCAAACTTTGAAAAACAT Found at i:762116 original size:23 final size:23 Alignment explanation
Indices: 762090--762137 Score: 60 Period size: 23 Copynumber: 2.1 Consensus size: 23 762080 ATAAAGTATA * * 762090 ATAACATACTAGGTAGTGCTTAT 1 ATAACATAATAGGTAGCGCTTAT ** 762113 ATAATGTAATAGGTAGCGCTTAT 1 ATAACATAATAGGTAGCGCTTAT 762136 AT 1 AT 762138 TGACATATTT Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 23 21 1.00 ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35 Consensus pattern (23 bp): ATAACATAATAGGTAGCGCTTAT Found at i:762742 original size:199 final size:199 Alignment explanation
Indices: 762369--762857 Score: 888 Period size: 199 Copynumber: 2.4 Consensus size: 199 762359 AAAATTACAT * * * 762369 ATTACATATTACATTGTACTTTTGGTTTTCTATGTTTTTGGGATCGACACTTTCTATATATGGAT 1 ATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGAT 762434 CGACACTTTATGGTTGCACCATGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAA 66 CGACACTTTATGGTTGCACC-TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAA * 762499 AAAGTATCGATAAATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATT 130 AAAGTATCGACAAATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATT 762564 GAAAA 195 GAAAA * 762569 ATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGATTGACACTTTTTATATATGGAT 1 ATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGAT 762634 CGACACTTTATGGTTGCACCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAA 66 CGACACTTTATGGTTGCACCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAA * * 762699 AAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG 131 AAGTATCGACAAATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG 762764 AAAA 196 AAAA * 762768 ATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGTT 1 ATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGAT 762833 CGACACTTTATGGTTGCACCCTGTT 66 CGACACTTTATGGTTGCA-CCTGTT 762858 GGCCATATTG Statistics Matches: 279, Mismatches: 9, Indels: 2 0.96 0.03 0.01 Matches are distributed among these distances: 199 192 0.69 200 87 0.31 ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39 Consensus pattern (199 bp): ATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGAT CGACACTTTATGGTTGCACCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAA AAGTATCGACAAATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG AAAA Found at i:762987 original size:18 final size:18 Alignment explanation
Indices: 762964--763024 Score: 59 Period size: 19 Copynumber: 3.3 Consensus size: 18 762954 TCTCATTCAT * 762964 AATTATATTCACATACAA 1 AATTATAATCACATACAA ** 762982 AATTATAAATCGTATACAA 1 AATTAT-AATCACATACAA ** 763001 AATTATAAATCTTATACAA 1 AATTAT-AATCACATACAA 763020 AATTA 1 AATTA 763025 ACCCTACATT Statistics Matches: 38, Mismatches: 4, Indels: 1 0.88 0.09 0.02 Matches are distributed among these distances: 18 6 0.16 19 32 0.84 ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34 Consensus pattern (18 bp): AATTATAATCACATACAA Found at i:763000 original size:19 final size:19 Alignment explanation
Indices: 762976--763024 Score: 89 Period size: 19 Copynumber: 2.6 Consensus size: 19 762966 TTATATTCAC 762976 ATACAAAATTATAAATCGT 1 ATACAAAATTATAAATCGT * 762995 ATACAAAATTATAAATCTT 1 ATACAAAATTATAAATCGT 763014 ATACAAAATTA 1 ATACAAAATTA 763025 ACCCTACATT Statistics Matches: 29, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 19 29 1.00 ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33 Consensus pattern (19 bp): ATACAAAATTATAAATCGT Found at i:764852 original size:33 final size:33 Alignment explanation
Indices: 764815--764880 Score: 105 Period size: 33 Copynumber: 2.0 Consensus size: 33 764805 CATCTTAATA * 764815 TCACCCCTTAACACCCCAACTTCTTTCACCACT 1 TCACCCCTCAACACCCCAACTTCTTTCACCACT * * 764848 TCACCCCTCAACACCTCTACTTCTTTCACCACT 1 TCACCCCTCAACACCCCAACTTCTTTCACCACT 764881 CCATCTATTT Statistics Matches: 30, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 33 30 1.00 ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29 Consensus pattern (33 bp): TCACCCCTCAACACCCCAACTTCTTTCACCACT Found at i:764939 original size:21 final size:21 Alignment explanation
Indices: 764914--764978 Score: 103 Period size: 21 Copynumber: 3.1 Consensus size: 21 764904 CCCCTTATGC 764914 CTCTCAAGTGTATCTTCGACT 1 CTCTCAAGTGTATCTTCGACT 764935 CTCTCAAGTGTATCTTCGACT 1 CTCTCAAGTGTATCTTCGACT * * * 764956 CTATCAAGTTTCTCTTCGACT 1 CTCTCAAGTGTATCTTCGACT 764977 CT 1 CT 764979 TGATTGTCTT Statistics Matches: 41, Mismatches: 3, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 21 41 1.00 ACGTcount: A:0.18, C:0.29, G:0.12, T:0.40 Consensus pattern (21 bp): CTCTCAAGTGTATCTTCGACT Found at i:767041 original size:24 final size:24 Alignment explanation
Indices: 767004--767056 Score: 63 Period size: 24 Copynumber: 2.2 Consensus size: 24 766994 CCGTTCTATC 767004 TATTTTCAGAGGATAT-TTAGCTTA 1 TATTTTCAGAGGATATGTTA-CTTA ** * 767028 TATTTTCATCGGATATGTTATTTA 1 TATTTTCAGAGGATATGTTACTTA 767052 TATTT 1 TATTT 767057 AATCGATACA Statistics Matches: 25, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 24 22 0.88 25 3 0.12 ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53 Consensus pattern (24 bp): TATTTTCAGAGGATATGTTACTTA Found at i:767218 original size:17 final size:18 Alignment explanation
Indices: 767196--767238 Score: 61 Period size: 20 Copynumber: 2.3 Consensus size: 18 767186 ATATATCCGG 767196 TATCATTT-TACCGGTTT 1 TATCATTTATACCGGTTT 767213 TATCATTTTGATACCGGTTT 1 TATCA-TTT-ATACCGGTTT 767233 TATCAT 1 TATCAT 767239 ATTTTTACCT Statistics Matches: 23, Mismatches: 0, Indels: 4 0.85 0.00 0.15 Matches are distributed among these distances: 17 5 0.22 18 3 0.13 19 1 0.04 20 14 0.61 ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51 Consensus pattern (18 bp): TATCATTTATACCGGTTT Found at i:767256 original size:20 final size:19 Alignment explanation
Indices: 767201--767247 Score: 67 Period size: 20 Copynumber: 2.4 Consensus size: 19 767191 TCCGGTATCA 767201 TTTTACCGGTTTTATCATT 1 TTTTACCGGTTTTATCATT * 767220 TTGATACCGGTTTTATCATAT 1 TT-TTACCGGTTTTATCAT-T 767241 TTTTACC 1 TTTTACC 767248 TGTTATATCG Statistics Matches: 24, Mismatches: 2, Indels: 3 0.83 0.07 0.10 Matches are distributed among these distances: 19 2 0.08 20 19 0.79 21 3 0.12 ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53 Consensus pattern (19 bp): TTTTACCGGTTTTATCATT Found at i:767409 original size:20 final size:20 Alignment explanation
Indices: 767382--767428 Score: 78 Period size: 20 Copynumber: 2.4 Consensus size: 20 767372 TCCGGTAACG 767382 TTTTACCGGTTTTATCAT-T 1 TTTTACCGGTTTTATCATAT 767401 TTCTTACCGGTTTTATCATAT 1 TT-TTACCGGTTTTATCATAT 767422 TTTTACC 1 TTTTACC 767429 TGGTATATCG Statistics Matches: 26, Mismatches: 0, Indels: 3 0.90 0.00 0.10 Matches are distributed among these distances: 19 2 0.08 20 21 0.81 21 3 0.12 ACGTcount: A:0.17, C:0.19, G:0.09, T:0.55 Consensus pattern (20 bp): TTTTACCGGTTTTATCATAT Found at i:767472 original size:181 final size:182 Alignment explanation
Indices: 767168--767640 Score: 718 Period size: 181 Copynumber: 2.6 Consensus size: 182 767158 CGTACTTACG * * * 767168 AAAGTATCGACACTTTCAATATATCCGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT 1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTCATACCGGTTT * * * 767233 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTAT 66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT 767298 AGG-CGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T 131 AGGAC-CTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT * 767349 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTCTTACCGGTTT 1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTCATACCGGTTT * * 767414 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT 66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT * * 767479 AGGACTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT 131 AGGACCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT * * * * * * * 767531 AAAGTACCGACACTTTAAATGTATCTGGTAGCGCTTTACCGGTTTTATCA-TTTCAATACTGGTT 1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTC-ATACCGGTT * * * 767595 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT 65 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT 767641 AATTTGGATC Statistics Matches: 266, Mismatches: 23, Indels: 5 0.90 0.08 0.02 Matches are distributed among these distances: 181 171 0.64 182 95 0.36 ACGTcount: A:0.26, C:0.17, G:0.14, T:0.42 Consensus pattern (182 bp): AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTCATACCGGTTT TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT AGGACCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT Found at i:770529 original size:59 final size:56 Alignment explanation
Indices: 770420--770639 Score: 196 Period size: 59 Copynumber: 3.8 Consensus size: 56 770410 TTATAACTAC * * * 770420 AAGGACTAGAATA-AAAAATAGAAACTTAAAGGACCT-AAATAGTAAAAATAGAAACCTA 1 AAGGACTAAAATAGAAAAATAGAAACTT-AGGGA-CTAAAATAGT--AAATAGAAACTTA * * 770478 GAGGACTAAAATAGCAAAAATAGAAACATAGGGACTAAAATAGATGAAATAGAAA-TTA 1 AAGGACTAAAATAG-AAAAATAGAAACTTAGGGACTAAAATAG-T-AAATAGAAACTTA * * 770536 AAGGGACTAAAATAGATAAAATAAAAACTTAGGGGACT-AAATAGTAAATACAAACATTTA 1 AA-GGACTAAAATAGA-AAAATAGAAACTTA-GGGACTAAAATAGTAAATAGAAAC--TTA * * * 770596 AAGGATTAAAATAGTAAAAATAGAAAGTTAAAGGACTAAAATAG 1 AAGGACTAAAATAG-AAAAATAGAAACTT-AGGGACTAAAATAG 770640 CAAAAATATA Statistics Matches: 135, Mismatches: 14, Indels: 24 0.78 0.08 0.14 Matches are distributed among these distances: 57 8 0.06 58 18 0.13 59 76 0.56 60 33 0.24 ACGTcount: A:0.57, C:0.07, G:0.16, T:0.19 Consensus pattern (56 bp): AAGGACTAAAATAGAAAAATAGAAACTTAGGGACTAAAATAGTAAATAGAAACTTA Found at i:770549 original size:89 final size:87 Alignment explanation
Indices: 770420--770647 Score: 227 Period size: 89 Copynumber: 2.6 Consensus size: 87 770410 TTATAACTAC * * 770420 AAGGACTAGAATA--AAAAATAGAAACTTAAAGGACCT-AAATAGTAAAAATAGAAACCTAGAGG 1 AAGGACTAAAATAGTAAAAATAGAAACTTAAAGGA-CTAAAATAG-AAAAATAAAAACCTAGAGG * 770482 ACTAAAATAGCAAAAATAGAAACA-T- 64 ACT-AAATAG--AAAATACAAACATTA * * * * 770507 AGGGACTAAAATAG-ATGAAATAGAAA-TTAAAGGGACTAAAATAGATAAAATAAAAACTTAGGG 1 AAGGACTAAAATAGTA-AAAATAGAAACTTAAA-GGACTAAAATAGA-AAAATAAAAACCTAGAG * 770570 GACTAAATAGTAAATACAAACATTTA 63 GACTAAATAGAAAATACAAACA-TTA * * 770596 AAGGATTAAAATAGTAAAAATAGAAAGTTAAAGGACTAAAATAGCAAAAATA 1 AAGGACTAAAATAGTAAAAATAGAAACTTAAAGGACTAAAATAG-AAAAATA 770648 TACATTTAAA Statistics Matches: 119, Mismatches: 11, Indels: 20 0.79 0.07 0.13 Matches are distributed among these distances: 86 10 0.08 87 11 0.09 88 16 0.13 89 75 0.63 90 7 0.06 ACGTcount: A:0.58, C:0.07, G:0.16, T:0.19 Consensus pattern (87 bp): AAGGACTAAAATAGTAAAAATAGAAACTTAAAGGACTAAAATAGAAAAATAAAAACCTAGAGGAC TAAATAGAAAATACAAACATTA Found at i:770659 original size:30 final size:29 Alignment explanation
Indices: 770420--770647 Score: 207 Period size: 30 Copynumber: 7.7 Consensus size: 29 770410 TTATAACTAC * 770420 AAGGACTAGAATA-AAAAATAGAAACTTA 1 AAGGACTAAAATAGAAAAATAGAAACTTA * 770448 AAGGACCT-AAATAGTAAAAATAGAAACCTA 1 AAGGA-CTAAAATAG-AAAAATAGAAACTTA * * 770478 GAGGACTAAAATAGCAAAAATAGAAACAT- 1 AAGGACTAAAATAG-AAAAATAGAAACTTA * * 770507 AGGGACTAAAATAGATGAAATAGAAA-TTA 1 AAGGACTAAAATAGA-AAAATAGAAACTTA * 770536 AAGGGACTAAAATAGATAAAATAAAAACTTA 1 AA-GGACTAAAATAGA-AAAATAGAAACTTA ** * * 770567 GGGGACT-AAATAG-TAAATACAAACATTTA 1 AAGGACTAAAATAGAAAAATAGAAAC--TTA * * 770596 AAGGATTAAAATAGTAAAAATAGAAAGTTA 1 AAGGACTAAAATAG-AAAAATAGAAACTTA 770626 AAGGACTAAAATAGCAAAAATA 1 AAGGACTAAAATAG-AAAAATA 770648 TACATTTAAA Statistics Matches: 163, Mismatches: 24, Indels: 24 0.77 0.11 0.11 Matches are distributed among these distances: 27 9 0.06 28 11 0.07 29 39 0.24 30 93 0.57 31 3 0.02 32 8 0.05 ACGTcount: A:0.58, C:0.07, G:0.16, T:0.19 Consensus pattern (29 bp): AAGGACTAAAATAGAAAAATAGAAACTTA Found at i:772134 original size:3 final size:3 Alignment explanation
Indices: 772126--772176 Score: 79 Period size: 3 Copynumber: 17.3 Consensus size: 3 772116 AAAATAACAA 772126 AAT AAT AAT AAT AAT AA- ACAT AAT AAT AAT AAT AAT AAT AAT AAT 1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT 772171 AA- AAT A 1 AAT AAT A 772177 TACAATAAAA Statistics Matches: 45, Mismatches: 0, Indels: 6 0.88 0.00 0.12 Matches are distributed among these distances: 2 3 0.07 3 41 0.91 4 1 0.02 ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29 Consensus pattern (3 bp): AAT Found at i:772183 original size:15 final size:14 Alignment explanation
Indices: 772129--772192 Score: 83 Period size: 15 Copynumber: 4.4 Consensus size: 14 772119 ATAACAAAAT 772129 AATAATAATAATAA 1 AATAATAATAATAA 772143 ACATAATAATAATAA 1 A-ATAATAATAATAA 772158 TAATAATAATAATAA 1 -AATAATAATAATAA * * 772173 AATATACAATAAAAA 1 AATA-ATAATAATAA 772188 AATAA 1 AATAA 772193 AAGACCCGGA Statistics Matches: 45, Mismatches: 2, Indels: 6 0.85 0.04 0.11 Matches are distributed among these distances: 14 6 0.13 15 38 0.84 16 1 0.02 ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27 Consensus pattern (14 bp): AATAATAATAATAA Found at i:772678 original size:129 final size:128 Alignment explanation
Indices: 772381--772785 Score: 409 Period size: 129 Copynumber: 3.1 Consensus size: 128 772371 AGTCGTCTAA * * * * 772381 GGGTGACACAACTCCTACGTGATGAGGAGATCTGGTCAGGGGATGACACTGCTCATACACAATGA 1 GGGTGACACAACTCCTACGTGATGAGAAG-TCTGGTC-GGGGATGACACGGCTCATACGCGATGA * ** * * * 772446 AGAGTTCTTGGCCATCTTTAGTTAGGGTGATAGC-TCGGTTCCTACGCGATGAGGACGGCTGGTT 64 AGATTTC-TGGCCATCTTTAG---GAATGATAACAT-GGTTCCTACGTGATGAGGACGACTGGTT * 772510 ATCTAA 124 ATC-AG * * * 772516 GGGTGACACAACTCCTATGTGATGAGGAGGTCTGGTCGGTGGATGACAC-GCTCATACGTGATGA 1 GGGTGACACAACTCCTACGTGATGA-GAAGTCTGGTCGG-GGATGACACGGCTCATACGCGATGA * * * 772580 AGATTTCTGGCCATCTTCAGGAATGATAACATGGTTCTTACGTGATGAGGACGATTGGTTATCAG 64 AGATTTCTGGCCATCTTTAGGAATGATAACATGGTTCCTACGTGATGAGGACGACTGGTTATCAG * * * * 772645 GGGTGACACGACTCCTACGTGATGAGTAAGTCTGGTCGGGGATGACACGGTTCCTACGCGATGAG 1 GGGTGACACAACTCCTACGTGATGAG-AAGTCTGGTCGGGGATGACACGGCTCATACGCGATGAA ** * * * * * 772710 GATGGCAGGCAATCTTTAGGGAGGACGATAACACGGTTCCTACGTGATGAGGACGACAGGTTATC 65 GATTTCTGGCCATCTTTA-GGA--ATGATAACATGGTTCCTACGTGATGAGGACGACTGGTTATC * 772775 TG 127 AG 772777 GGGTGACAC 1 GGGTGACAC 772786 GGCTCAAACA Statistics Matches: 228, Mismatches: 34, Indels: 19 0.81 0.12 0.07 Matches are distributed among these distances: 128 10 0.04 129 60 0.26 130 37 0.16 131 1 0.00 132 46 0.20 133 12 0.05 134 20 0.09 135 40 0.18 136 2 0.01 ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25 Consensus pattern (128 bp): GGGTGACACAACTCCTACGTGATGAGAAGTCTGGTCGGGGATGACACGGCTCATACGCGATGAAG ATTTCTGGCCATCTTTAGGAATGATAACATGGTTCCTACGTGATGAGGACGACTGGTTATCAG Found at i:772782 original size:132 final size:128 Alignment explanation
Indices: 772381--772863 Score: 423 Period size: 132 Copynumber: 3.7 Consensus size: 128 772371 AGTCGTCTAA * * * * *** 772381 GGGTGACACAACTCCTACGTGATGAGGAGATCTGGTCAGGGGATGACACTGCTCATACACAATGA 1 GGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTC-GGGGATGACAC-GTTCCTACGTGATG- * ** * * * * 772446 AGA-GTTCTTGGCCATCTTTAGTTAGG-GTGATAGCTCGGTTCCTACGCGATGAGGACGGCTGGT 63 AGATG-GC-TGGCCATCTTTAG---GGAACGATAACACGGTTCCTACGTGATGAGGACGACTGGT * 772509 TATCTAA 123 TATCT-G * * * * 772516 GGGTGACACAACTCCTATGTGATGAGGAGGTCTGGTCGGTGGATGACACGCTCATACGTGATGAA 1 GGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCGG-GGATGACACGTTCCTACGTGATG-A ** * * * * * * 772581 GATTTCTGGCCATCTTCA-GGAATGATAACATGGTTCTTACGTGATGAGGACGATTGGTTATCAG 64 GATGGCTGGCCATCTTTAGGGAACGATAACACGGTTCCTACGTGATGAGGACGACTGGTTATCTG * * * 772645 GGGTGACACGACTCCTACGTGATGAGTAAGTCTGGTCGGGGATGACACGGTTCCTACGCGATGAG 1 GGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGATGACAC-GTTCCTACGTGATGA- * * * 772710 GATGGCAGGCAATCTTTAGGGAGGACGATAACACGGTTCCTACGTGATGAGGACGACAGGTTATC 64 GATGGCTGGCCATCTTTAGGGA--ACGATAACACGGTTCCTACGTGATGAGGACGACTGGTTATC 772775 TG 127 TG * ** * * * * 772777 GGGTGACACGGCTCAAACATGATAAGGAGGTCTGGTTGGGGGATGACACATTTCCTACGTGATGA 1 GGGTGACACGACTCCTACGTGATGAGGAGGTCTGG-TCGGGGATGACAC-GTTCCTACGTGATGA * 772842 GATGGTTGGCCATCTTTAGGGA 64 GATGGCTGGCCATCTTTAGGGA 772864 TTTTGGTTTC Statistics Matches: 290, Mismatches: 49, Indels: 21 0.81 0.14 0.06 Matches are distributed among these distances: 128 10 0.03 129 61 0.21 130 36 0.12 132 84 0.29 133 36 0.12 134 19 0.07 135 44 0.15 ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25 Consensus pattern (128 bp): GGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGATGACACGTTCCTACGTGATGAGA TGGCTGGCCATCTTTAGGGAACGATAACACGGTTCCTACGTGATGAGGACGACTGGTTATCTG Found at i:775862 original size:19 final size:20 Alignment explanation
Indices: 775819--775862 Score: 63 Period size: 19 Copynumber: 2.2 Consensus size: 20 775809 AATCAGTATT 775819 AATGAGTTCAAGTATAAGTA 1 AATGAGTTCAAGTATAAGTA * * 775839 GATGAGTT-AAGTATATGTA 1 AATGAGTTCAAGTATAAGTA 775858 AATGA 1 AATGA 775863 ACGAAATAGG Statistics Matches: 21, Mismatches: 3, Indels: 1 0.84 0.12 0.04 Matches are distributed among these distances: 19 14 0.67 20 7 0.33 ACGTcount: A:0.43, C:0.02, G:0.23, T:0.32 Consensus pattern (20 bp): AATGAGTTCAAGTATAAGTA Found at i:776067 original size:65 final size:67 Alignment explanation
Indices: 775929--776068 Score: 164 Period size: 65 Copynumber: 2.1 Consensus size: 67 775919 TTTTGGTCAT * 775929 AGGGTATCGATACCATATGAAGGGGTATTGATACCTCCTCTTGAATGAAAAATTACAGAATGTCA 1 AGGGTATCGATACCATATGAAGGGGTATCGATACCTCCTCTTGAATGAAAAATTACAGAATGTCA * 775994 GT 66 GC * * * * 775996 ATGGTATCGATACCATAT-AGGGGGTATCGATACC-CC-C-TGAAGATGAAAATTTCCAGAATGT 1 AGGGTATCGATACCATATGAAGGGGTATCGATACCTCCTCTTG-A-ATGAAAAATTACAGAATGT 776057 -AGGC 64 CA-GC 776061 AGGGTATC 1 AGGGTATC 776069 TATATCTCAG Statistics Matches: 63, Mismatches: 7, Indels: 8 0.81 0.09 0.10 Matches are distributed among these distances: 63 2 0.03 64 3 0.05 65 27 0.43 66 14 0.22 67 17 0.27 ACGTcount: A:0.33, C:0.16, G:0.24, T:0.26 Consensus pattern (67 bp): AGGGTATCGATACCATATGAAGGGGTATCGATACCTCCTCTTGAATGAAAAATTACAGAATGTCA GC Found at i:776631 original size:22 final size:22 Alignment explanation
Indices: 776603--776701 Score: 121 Period size: 22 Copynumber: 4.5 Consensus size: 22 776593 GAGGGTTTAT * 776603 AGTGGTCTTTCGGGACATATCC 1 AGTGGTCCTTCGGGACATATCC 776625 AGTGGTCCTTCGGGA-AGTATCC 1 AGTGGTCCTTCGGGACA-TATCC * * 776647 AATGGTCCTTC-GGACGTATCC 1 AGTGGTCCTTCGGGACATATCC ** 776668 AGTGGTCCTTCGGGATGTATCC 1 AGTGGTCCTTCGGGACATATCC * 776690 ATTGGTCCTTCG 1 AGTGGTCCTTCG 776702 AGACGTAGTG Statistics Matches: 68, Mismatches: 6, Indels: 6 0.85 0.08 0.08 Matches are distributed among these distances: 21 19 0.28 22 49 0.72 ACGTcount: A:0.16, C:0.24, G:0.28, T:0.31 Consensus pattern (22 bp): AGTGGTCCTTCGGGACATATCC Found at i:776672 original size:43 final size:43 Alignment explanation
Indices: 776605--776708 Score: 154 Period size: 43 Copynumber: 2.4 Consensus size: 43 776595 GGGTTTATAG * * 776605 TGGTCTTTCGGGACATATCCAGTGGTCCTTCGGGAAGTATCCAA 1 TGGTCCTTC-GGACGTATCCAGTGGTCCTTCGGGAAGTATCCAA * * 776649 TGGTCCTTCGGACGTATCCAGTGGTCCTTCGGGATGTATCCAT 1 TGGTCCTTCGGACGTATCCAGTGGTCCTTCGGGAAGTATCCAA 776692 TGGTCCTTCGAGACGTA 1 TGGTCCTTCG-GACGTA 776709 GTGTCCTTCA Statistics Matches: 55, Mismatches: 4, Indels: 2 0.90 0.07 0.03 Matches are distributed among these distances: 43 41 0.75 44 14 0.25 ACGTcount: A:0.17, C:0.24, G:0.28, T:0.31 Consensus pattern (43 bp): TGGTCCTTCGGACGTATCCAGTGGTCCTTCGGGAAGTATCCAA Found at i:782376 original size:20 final size:20 Alignment explanation
Indices: 782351--782407 Score: 114 Period size: 20 Copynumber: 2.9 Consensus size: 20 782341 TTCCATAATG 782351 TAGGCAGGGTATCTATACCA 1 TAGGCAGGGTATCTATACCA 782371 TAGGCAGGGTATCTATACCA 1 TAGGCAGGGTATCTATACCA 782391 TAGGCAGGGTATCTATA 1 TAGGCAGGGTATCTATA 782408 TCTCAGTTAG Statistics Matches: 37, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 20 37 1.00 ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26 Consensus pattern (20 bp): TAGGCAGGGTATCTATACCA Found at i:782965 original size:22 final size:22 Alignment explanation
Indices: 782938--783043 Score: 178 Period size: 22 Copynumber: 4.9 Consensus size: 22 782928 GAGGGTTTAT * * 782938 AGTGGTCCTTCGGGACATATCT 1 AGTGGTCCTTCGGGACGTATCC 782960 AGTGGTCCTTCGGGACGTATCC 1 AGTGGTCCTTCGGGACGTATCC * 782982 AGTGGTCCTTCGGAACGTATCC 1 AGTGGTCCTTCGGGACGTATCC 783004 AGTGGTCCTTC-GGACGTATCC 1 AGTGGTCCTTCGGGACGTATCC 783025 AGTGGTCCTTCGGGACGTA 1 AGTGGTCCTTCGGGACGTA 783044 GTGGTCATTC Statistics Matches: 79, Mismatches: 4, Indels: 2 0.93 0.05 0.02 Matches are distributed among these distances: 21 20 0.25 22 59 0.75 ACGTcount: A:0.16, C:0.25, G:0.30, T:0.28 Consensus pattern (22 bp): AGTGGTCCTTCGGGACGTATCC Found at i:785031 original size:64 final size:63 Alignment explanation
Indices: 784912--785120 Score: 201 Period size: 64 Copynumber: 3.3 Consensus size: 63 784902 TTTTTCAGAG * * 784912 TGATGCACCGATGCACCAATCCATGCATCGATGCAC-CATGA-ATTAAATTG-AACATCGAATGC 1 TGATGCATCGATGCA-CAA-CCATGCATCGATGCACTCAGGATATT--A-TGAAACATCGAATGC 784974 ATT 61 ATT * * * 784977 TCATGCATCGATGCACATACCATGCA-CGATGCACTGAGGATATTATGAAAACATCGAATACATT 1 TGATGCATCGATGCACA-ACCATGCATCGATGCACTCAGGATATTATG-AAACATCGAATGCATT * * * * * * * * 785041 TGATGCATCGATGCACCAGCCATGCATTGATGCAGTCTGGCTATTTTGAAACATTGAATGCACT 1 TGATGCATCGATGCA-CAACCATGCATCGATGCACTCAGGATATTATGAAACATCGAATGCATT 785105 TGATGCATCGATGCAC 1 TGATGCATCGATGCAC 785121 TAATGATCCA Statistics Matches: 121, Mismatches: 16, Indels: 16 0.79 0.10 0.10 Matches are distributed among these distances: 62 2 0.02 63 10 0.08 64 75 0.62 65 34 0.28 ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26 Consensus pattern (63 bp): TGATGCATCGATGCACAACCATGCATCGATGCACTCAGGATATTATGAAACATCGAATGCATT Found at i:789946 original size:24 final size:23 Alignment explanation
Indices: 789918--790062 Score: 69 Period size: 24 Copynumber: 6.5 Consensus size: 23 789908 CACTTAACAA 789918 TGCATCGATGCATCCCTTTGAATG 1 TGCATCGATGCAT-CCTTTGAATG * * 789942 TGCATCGATTCATCATGTTG-A-- 1 TGCATCGATGCATCCT-TTGAATG * ** 789963 TGCACCGATGCA--C-TT-AACAA 1 TGCATCGATGCATCCTTTGAA-TG 789983 TGCATCGATGCATCCCTTTGAATG 1 TGCATCGATGCAT-CCTTTGAATG * * * 790007 TGCATCAATTCATCATGTTG-A-- 1 TGCATCGATGCATCCT-TTGAATG * * 790028 TGCACCGATGCA-CGCCTTGAATG 1 TGCATCGATGCATC-CTTTGAATG 790051 TGCATCGATGCA 1 TGCATCGATGCA 790063 CAGGGTCATG Statistics Matches: 89, Mismatches: 17, Indels: 31 0.65 0.12 0.23 Matches are distributed among these distances: 17 3 0.03 20 15 0.17 21 20 0.22 23 18 0.20 24 31 0.35 25 2 0.02 ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30 Consensus pattern (23 bp): TGCATCGATGCATCCTTTGAATG Found at i:790001 original size:65 final size:65 Alignment explanation
Indices: 789897--790040 Score: 279 Period size: 65 Copynumber: 2.2 Consensus size: 65 789887 TTTGTGCTTT * 789897 ATGCACCGATGCACTTAACAATGCATCGATGCATCCCTTTGAATGTGCATCGATTCATCATGTTG 1 ATGCACCGATGCACTTAACAATGCATCGATGCATCCCTTTGAATGTGCATCAATTCATCATGTTG 789962 ATGCACCGATGCACTTAACAATGCATCGATGCATCCCTTTGAATGTGCATCAATTCATCATGTTG 1 ATGCACCGATGCACTTAACAATGCATCGATGCATCCCTTTGAATGTGCATCAATTCATCATGTTG 790027 ATGCACCGATGCAC 1 ATGCACCGATGCAC 790041 GCCTTGAATG Statistics Matches: 78, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 65 78 1.00 ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29 Consensus pattern (65 bp): ATGCACCGATGCACTTAACAATGCATCGATGCATCCCTTTGAATGTGCATCAATTCATCATGTTG Found at i:795914 original size:17 final size:18 Alignment explanation
Indices: 795892--795925 Score: 52 Period size: 17 Copynumber: 1.9 Consensus size: 18 795882 GATTTAAAAT * 795892 ACAAAATGAAGT-AATTA 1 ACAAAATAAAGTCAATTA 795909 ACAAAATAAAGTCAATT 1 ACAAAATAAAGTCAATT 795926 GATTTCAAGT Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 17 11 0.73 18 4 0.27 ACGTcount: A:0.59, C:0.09, G:0.09, T:0.24 Consensus pattern (18 bp): ACAAAATAAAGTCAATTA Found at i:796314 original size:30 final size:30 Alignment explanation
Indices: 796280--796473 Score: 114 Period size: 30 Copynumber: 6.5 Consensus size: 30 796270 TAAATGACCT 796280 AAATAGCAAAAATAGAAATCTAAGGGACTA 1 AAATAGCAAAAATAGAAATCTAAGGGACTA * * 796310 AAATAGCAAAAACA-AAAAC-ATAGGGACTA 1 AAATAGCAAAAATAGAAATCTA-AGGGACTA * *** ** 796339 AAATAG-AAGAAATAAAAAAGAAACAGACTA 1 AAATAGCAA-AAATAGAAATCTAAGGGACTA * * 796369 AAATAG-ATAAAATAGAAA-CTTAGGGGGCT- 1 AAATAGCA-AAAATAGAAATC-TAAGGGACTA * * * * * * 796398 AACTAACAAATATAGACATTTAAAGGACTA 1 AAATAGCAAAAATAGAAATCTAAGGGACTA * * * 796428 AAACATCAAAAATAGAAAGT-TAAAGGACTA 1 AAATAGCAAAAATAGAAA-TCTAAGGGACTA * 796458 AAATAACAAAAATAGA 1 AAATAGCAAAAATAGA 796474 CATTTAAAGG Statistics Matches: 126, Mismatches: 28, Indels: 20 0.72 0.16 0.11 Matches are distributed among these distances: 28 3 0.02 29 40 0.32 30 80 0.63 31 3 0.02 ACGTcount: A:0.60, C:0.10, G:0.14, T:0.16 Consensus pattern (30 bp): AAATAGCAAAAATAGAAATCTAAGGGACTA Found at i:796481 original size:30 final size:30 Alignment explanation
Indices: 796401--796489 Score: 124 Period size: 30 Copynumber: 3.0 Consensus size: 30 796391 GGGGGCTAAC * 796401 TAACAAATATAGACATTTAAAGGACTAAAA 1 TAACAAAAATAGACATTTAAAGGACTAAAA * * * * 796431 CATCAAAAATAGAAAGTTAAAGGACTAAAA 1 TAACAAAAATAGACATTTAAAGGACTAAAA * 796461 TAACAAAAATAGACATTTAAAGGGCTAAA 1 TAACAAAAATAGACATTTAAAGGACTAAA 796490 TAGTAATTAC Statistics Matches: 49, Mismatches: 10, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 30 49 1.00 ACGTcount: A:0.57, C:0.10, G:0.12, T:0.20 Consensus pattern (30 bp): TAACAAAAATAGACATTTAAAGGACTAAAA Found at i:796973 original size:2 final size:2 Alignment explanation
Indices: 796961--796994 Score: 59 Period size: 2 Copynumber: 17.0 Consensus size: 2 796951 AAGAAATGCA * 796961 AG AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG 1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG 796995 CTCTCAACTA Statistics Matches: 30, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00 Consensus pattern (2 bp): AG Found at i:797995 original size:3 final size:3 Alignment explanation
Indices: 797989--798025 Score: 58 Period size: 3 Copynumber: 12.3 Consensus size: 3 797979 AAAATAAAAA 797989 AAT AAT AAT AAT AA- ACAT AAT AAT AAT AAT AAT AAT A 1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT A 798026 TACAATAAAT Statistics Matches: 32, Mismatches: 0, Indels: 4 0.89 0.00 0.11 Matches are distributed among these distances: 2 1 0.03 3 30 0.94 4 1 0.03 ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30 Consensus pattern (3 bp): AAT Found at i:797997 original size:21 final size:22 Alignment explanation
Indices: 797955--798042 Score: 63 Period size: 24 Copynumber: 3.8 Consensus size: 22 797945 AGTGGGCCTG * 797955 TAAAAATTAAACAAAAT-GTAAT- 1 TAAAAA-TAAA-AAAATAATAATA 797977 TAAAAATAAAAAAATAATAATAA 1 TAAAAATAAAAAAATAATAAT-A * * 798000 TAAACATAATAATAATAATAATAA 1 TAAAAATAA-AAAAATAATAAT-A * 798024 TATACAATAAATAAAATAA 1 TA-AAAATAAA-AAAATAA 798043 AAAAGATTCG Statistics Matches: 54, Mismatches: 6, Indels: 9 0.78 0.09 0.13 Matches are distributed among these distances: 20 5 0.09 21 8 0.15 22 6 0.11 23 8 0.15 24 16 0.30 25 11 0.20 ACGTcount: A:0.69, C:0.03, G:0.01, T:0.26 Consensus pattern (22 bp): TAAAAATAAAAAAATAATAATA Found at i:798010 original size:15 final size:15 Alignment explanation
Indices: 797981--798025 Score: 65 Period size: 15 Copynumber: 3.1 Consensus size: 15 797971 TGTAATTAAA 797981 AATAA-AAAAATAAT 1 AATAATAAAAATAAT * 797995 AATAATAAACATAAT 1 AATAATAAAAATAAT * 798010 AATAATAATAATAAT 1 AATAATAAAAATAAT 798025 A 1 A 798026 TACAATAAAT Statistics Matches: 27, Mismatches: 3, Indels: 1 0.87 0.10 0.03 Matches are distributed among these distances: 14 5 0.19 15 22 0.81 ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27 Consensus pattern (15 bp): AATAATAAAAATAAT Found at i:798978 original size:25 final size:20 Alignment explanation
Indices: 798927--798968 Score: 84 Period size: 20 Copynumber: 2.1 Consensus size: 20 798917 AATGGATGTG 798927 TTTGTTTTATATTATGTTTA 1 TTTGTTTTATATTATGTTTA 798947 TTTGTTTTATATTATGTTTA 1 TTTGTTTTATATTATGTTTA 798967 TT 1 TT 798969 AAGGTTGTTT Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 20 22 1.00 ACGTcount: A:0.19, C:0.00, G:0.10, T:0.71 Consensus pattern (20 bp): TTTGTTTTATATTATGTTTA Found at i:800016 original size:24 final size:23 Alignment explanation
Indices: 799981--800034 Score: 63 Period size: 24 Copynumber: 2.3 Consensus size: 23 799971 CACCAAAGCT * * * 799981 CGTATAATTGCACTGAAGTACCG 1 CGTAGAATTGCACCGAAGTACCA * 800004 CGTAGAATATGCACCGAAGTGCCA 1 CGTAGAAT-TGCACCGAAGTACCA 800028 CGTAGAA 1 CGTAGAA 800035 ATGTCCCAAA Statistics Matches: 26, Mismatches: 4, Indels: 1 0.84 0.13 0.03 Matches are distributed among these distances: 23 7 0.27 24 19 0.73 ACGTcount: A:0.33, C:0.22, G:0.24, T:0.20 Consensus pattern (23 bp): CGTAGAATTGCACCGAAGTACCA Found at i:800113 original size:23 final size:23 Alignment explanation
Indices: 799995--800115 Score: 77 Period size: 23 Copynumber: 5.3 Consensus size: 23 799985 TAATTGCACT * * 799995 GAAGTACCGCGTAGAATATG-CACC 1 GAAGGACCACGTAGAA-ATGTC-CC 800019 GAAGTG-CCACGTAGAAATGTCCC 1 GAAG-GACCACGTAGAAATGTCCC * * * * 800042 -AAAGACCACATAGTATTGTCCC 1 GAAGGACCACGTAGAAATGTCCC * * * ** 800064 GAAGAACCGCCTAGAAATGTCTT 1 GAAGGACCACGTAGAAATGTCCC * * 800087 GAAGGACCATGTAGAATTGTCCC 1 GAAGGACCACGTAGAAATGTCCC 800110 GAAGGA 1 GAAGGA 800116 TAGCATAGAA Statistics Matches: 72, Mismatches: 21, Indels: 9 0.71 0.21 0.09 Matches are distributed among these distances: 21 1 0.01 22 16 0.22 23 41 0.57 24 14 0.19 ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19 Consensus pattern (23 bp): GAAGGACCACGTAGAAATGTCCC Found at i:801933 original size:22 final size:22 Alignment explanation
Indices: 801914--801970 Score: 64 Period size: 22 Copynumber: 2.5 Consensus size: 22 801904 ATAAAAAAGT 801914 AAAATAAAA-ACAACATAAAATA 1 AAAATAAAATA-AACATAAAATA * 801936 AAAATAAAATAAACATAATAATTG 1 AAAATAAAATAAACATAA-AA-TA 801960 AAAA-AAAATAA 1 AAAATAAAATAA 801971 CAGTGACTAA Statistics Matches: 31, Mismatches: 1, Indels: 5 0.84 0.03 0.14 Matches are distributed among these distances: 22 16 0.52 23 10 0.32 24 5 0.16 ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18 Consensus pattern (22 bp): AAAATAAAATAAACATAAAATA Found at i:801934 original size:16 final size:16 Alignment explanation
Indices: 801908--801953 Score: 56 Period size: 16 Copynumber: 2.8 Consensus size: 16 801898 ATAGATATAA 801908 AAAAGTAAAATAAAAAC 1 AAAA-TAAAATAAAAAC * * 801925 AACATAAAATAAAAAT 1 AAAATAAAATAAAAAC 801941 AAAATAAACATAA 1 AAAATAAA-ATAA 801954 TAATTGAAAA Statistics Matches: 25, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 16 18 0.72 17 7 0.28 ACGTcount: A:0.76, C:0.07, G:0.02, T:0.15 Consensus pattern (16 bp): AAAATAAAATAAAAAC Found at i:801972 original size:22 final size:20 Alignment explanation
Indices: 801908--801972 Score: 58 Period size: 22 Copynumber: 3.0 Consensus size: 20 801898 ATAGATATAA * 801908 AAAAGTAAAATAAAAACAACAT 1 AAAA-TAAAA-AAAAATAACAT 801930 AAAATAAAAATAAAATAAACAT 1 AAAATAAAAA-AAAAT-AACAT * 801952 AATAATTGAAAAAAAATAACA 1 AA-AA-TAAAAAAAAATAACA 801973 GTGACTAAAA Statistics Matches: 37, Mismatches: 2, Indels: 8 0.79 0.04 0.17 Matches are distributed among these distances: 20 1 0.03 21 9 0.24 22 15 0.41 23 7 0.19 24 5 0.14 ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17 Consensus pattern (20 bp): AAAATAAAAAAAAATAACAT Found at i:802055 original size:51 final size:50 Alignment explanation
Indices: 801965--802079 Score: 128 Period size: 51 Copynumber: 2.3 Consensus size: 50 801955 AATTGAAAAA * * 801965 AAATAACAGTGACTAAAATATAAGAAAATAAAAGTTAGTAG-TCAAATAAG 1 AAATAACAGTGACGAAAATATAAGAAAATAAAAGATAGTAGAT-AAATAAG * * 802015 AAATAACTAGTGACGAAAATATAA-AAATTTAAATA-ATAGTAGATAAATCAG 1 AAATAAC-AGTGACGAAAATATAAGAAA-ATAAA-AGATAGTAGATAAATAAG 802066 AAATTAACAGTGAC 1 AAA-TAACAGTGAC 802080 TAAATTAAAA Statistics Matches: 56, Mismatches: 4, Indels: 9 0.81 0.06 0.13 Matches are distributed among these distances: 50 10 0.18 51 40 0.71 52 6 0.11 ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23 Consensus pattern (50 bp): AAATAACAGTGACGAAAATATAAGAAAATAAAAGATAGTAGATAAATAAG Found at i:802374 original size:14 final size:14 Alignment explanation
Indices: 802355--802385 Score: 62 Period size: 14 Copynumber: 2.2 Consensus size: 14 802345 TTTAAAGCAC 802355 AAACAGATATTGGA 1 AAACAGATATTGGA 802369 AAACAGATATTGGA 1 AAACAGATATTGGA 802383 AAA 1 AAA 802386 ATACGCATGA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 17 1.00 ACGTcount: A:0.55, C:0.06, G:0.19, T:0.19 Consensus pattern (14 bp): AAACAGATATTGGA Found at i:803268 original size:16 final size:16 Alignment explanation
Indices: 803247--803277 Score: 62 Period size: 16 Copynumber: 1.9 Consensus size: 16 803237 TAGTTGGGCC 803247 TCGGGTTGGGTCTTGG 1 TCGGGTTGGGTCTTGG 803263 TCGGGTTGGGTCTTG 1 TCGGGTTGGGTCTTG 803278 TAAACGGGCT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 15 1.00 ACGTcount: A:0.00, C:0.13, G:0.48, T:0.39 Consensus pattern (16 bp): TCGGGTTGGGTCTTGG Found at i:803630 original size:91 final size:92 Alignment explanation
Indices: 803499--803675 Score: 275 Period size: 91 Copynumber: 1.9 Consensus size: 92 803489 TTCGTGAATC * 803499 GAGCAAAGGTTGAACAAGCTCTTCATTATGAATTCTCTACTAGAAATGTTGGTCCCTCAAGTGAG 1 GAGCAAAGGTTGAACAAGCTCTTCATCATGAATTCTCTACTAGAAATGTTGGTCCCTCAAGTGAG * 803564 GTGTCGCTAATTCGAAATGTCACGATT 66 GCGTCGCTAATTCGAAATGTCACGATT * * * * 803591 GAGCCAAGGTTGAATAAGTTCTTC-TCATGAATTCTCTACTAGAAATGTTGGTCCCTCGAGTGAG 1 GAGCAAAGGTTGAACAAGCTCTTCATCATGAATTCTCTACTAGAAATGTTGGTCCCTCAAGTGAG * * 803655 GCGTCTCTGATTCGAAATGTC 66 GCGTCGCTAATTCGAAATGTC 803676 GTGAATCTAG Statistics Matches: 77, Mismatches: 8, Indels: 1 0.90 0.09 0.01 Matches are distributed among these distances: 91 56 0.73 92 21 0.27 ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31 Consensus pattern (92 bp): GAGCAAAGGTTGAACAAGCTCTTCATCATGAATTCTCTACTAGAAATGTTGGTCCCTCAAGTGAG GCGTCGCTAATTCGAAATGTCACGATT Found at i:803850 original size:39 final size:39 Alignment explanation
Indices: 803733--804101 Score: 546 Period size: 39 Copynumber: 9.5 Consensus size: 39 803723 GTTTTAAGAA * * 803733 AAACAATCTCAAGTGAGAT-AAATCTTCTGTTTCGAGTG 1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG * * 803771 AAACTATCTCAAGTGAGATAAAAATCTTCTGTTTCAAGTG 1 AAACTATCTCAAGCGAGAT-AAAATCTTCTGTTTCGAGTG * * 803811 AAACTATCTCAAGCGAGATAAAATATTATGTTTCGAGTG 1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG * * 803850 AAACTATCTCAAGCGAGATAAAATATTTTGTTTCGAGTG 1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG 803889 AAACTATCTCAAGCGAGAT-AAATCTTCTGTTTCGAGTG 1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG 803927 AAACTATCTCAAGCGAGAT-AAATCTTCTGTTTCGAGTG 1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG * * 803965 AAACTATCTCAAGCGAGATAAAGTCTTTTGTTTCGAGTG 1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG * * * * 804004 AAACTATTTCAAGCGATATAAAATCTTCTATTTTGAGTG 1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG * * * * 804043 AAACTATCTCAAGTGAGATAAAATATTTTGTTTCGTGTG 1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG 804082 AAACTATCTCAAGCGAGATA 1 AAACTATCTCAAGCGAGATA 804102 CTGATCCCTA Statistics Matches: 302, Mismatches: 26, Indels: 5 0.91 0.08 0.02 Matches are distributed among these distances: 38 92 0.30 39 174 0.58 40 36 0.12 ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33 Consensus pattern (39 bp): AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG Found at i:803981 original size:19 final size:19 Alignment explanation
Indices: 803883--803981 Score: 62 Period size: 19 Copynumber: 5.2 Consensus size: 19 803873 TATTTTGTTT 803883 CGAGTGAAACTATCTCAAG 1 CGAGTGAAACTATCTCAAG **** 803902 CGAGAT-AAATCT-TCTGTTT 1 CGAG-TGAAA-CTATCTCAAG 803921 CGAGTGAAACTATCTCAAG 1 CGAGTGAAACTATCTCAAG **** 803940 CGAGAT-AAATCT-TCTGTTT 1 CGAG-TGAAA-CTATCTCAAG 803959 CGAGTGAAACTATCTCAAG 1 CGAGTGAAACTATCTCAAG 803978 CGAG 1 CGAG 803982 ATAAAGTCTT Statistics Matches: 56, Mismatches: 16, Indels: 16 0.64 0.18 0.18 Matches are distributed among these distances: 18 6 0.11 19 44 0.79 20 6 0.11 ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28 Consensus pattern (19 bp): CGAGTGAAACTATCTCAAG Found at i:805617 original size:55 final size:55 Alignment explanation
Indices: 805446--805769 Score: 409 Period size: 55 Copynumber: 5.9 Consensus size: 55 805436 TACCACAATG * * * * * 805446 GAAATTCATATACTTATTATGAATTTTTTAGTTTTGCATACAAAGAGCCCATACA 1 GAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACA * * * 805501 -AAATTCATAAACTTATTATGAATTTCTTAGCTTTTTGCACACAAAGTACCCATATA 1 GAAATTCATAAACTCATTATGAATTTCTTAG--TTTTGCACACAAAGTGCCCATACA * * * * 805557 TAAATTCAAAAACTCATTATGAATTTCTTAGTTTTGCACACAAATTTCCCATACA 1 GAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACA * * * 805612 GAAATTCATAAACTCATTATGAATTTCTTAGTTTTTCACACAGAGTGTCCATAC- 1 GAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACA * * * * 805666 GAAAATTCATAAAATCATTATGAATTTCTTAGTTTTTCACACAAAGTGCCAATACG 1 G-AAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACA * * 805722 GAAATTCATAAACTCGTTATGAATTTCTTAGTTTTTGCACACACAGTG 1 GAAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACAAAGTG 805770 TCATTTGGTA Statistics Matches: 237, Mismatches: 26, Indels: 11 0.86 0.09 0.04 Matches are distributed among these distances: 54 29 0.12 55 145 0.61 56 35 0.15 57 28 0.12 ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37 Consensus pattern (55 bp): GAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACA Found at i:806237 original size:22 final size:20 Alignment explanation
Indices: 806185--806262 Score: 70 Period size: 19 Copynumber: 3.9 Consensus size: 20 806175 TACATTCTGG 806185 ATCTATGGTATCGATA-TCT 1 ATCTATGGTATCGATACTCT * * 806204 ATCTCTTAGTATCGATACTTCT 1 ATCT-ATGGTATCGATAC-TCT * 806226 ATACTATGGTATTGATACTCT 1 AT-CTATGGTATCGATACTCT ** 806247 AT-TACAGTATCGATAC 1 ATCTATGGTATCGATAC 806263 CATTTTTGCA Statistics Matches: 47, Mismatches: 8, Indels: 8 0.75 0.13 0.13 Matches are distributed among these distances: 19 15 0.32 20 10 0.21 21 5 0.11 22 15 0.32 23 2 0.04 ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41 Consensus pattern (20 bp): ATCTATGGTATCGATACTCT Found at i:806258 original size:94 final size:95 Alignment explanation
Indices: 806117--806296 Score: 229 Period size: 94 Copynumber: 1.9 Consensus size: 95 806107 CATGGTATCG * * 806117 AGTATCGATACTTCTACACTGTGGTACCGATATTCCATCTCAATATCGATACCATTTCTACATTC 1 AGTATCGATACTTCTACACTATGGTACCGATACTCCATCTCAATATCGATACCATTTCTACATTC * * 806182 TG-GATCTATGGTATCGATATCTATCTCTT 66 TGAAATCAATGGTATCGATATCTATCTCTT * ** * * * * 806211 AGTATCGATACTTCTATACTATGGTATTGATACTCTAT-TACAGTATCGATACCATTTTTGCATT 1 AGTATCGATACTTCTACACTATGGTACCGATACTCCATCT-CAATATCGATACCATTTCTACATT 806275 CTGTAAATCAATGGTATCGATA 65 CTG-AAATCAATGGTATCGATA 806297 CCTTCCTCAT Statistics Matches: 72, Mismatches: 11, Indels: 4 0.83 0.13 0.05 Matches are distributed among these distances: 93 1 0.01 94 56 0.78 96 15 0.21 ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39 Consensus pattern (95 bp): AGTATCGATACTTCTACACTATGGTACCGATACTCCATCTCAATATCGATACCATTTCTACATTC TGAAATCAATGGTATCGATATCTATCTCTT Found at i:806261 original size:19 final size:20 Alignment explanation
Indices: 806210--806262 Score: 56 Period size: 22 Copynumber: 2.6 Consensus size: 20 806200 ATCTATCTCT 806210 TAGTATCGATACTTCTATAC 1 TAGTATCGATACTTCTATAC * 806230 TATGGTATTGATAC-TCTATTAC 1 TA--GTATCGATACTTCTA-TAC 806252 -AGTATCGATAC 1 TAGTATCGATAC 806263 CATTTTTGCA Statistics Matches: 28, Mismatches: 2, Indels: 7 0.76 0.05 0.19 Matches are distributed among these distances: 19 9 0.32 20 2 0.07 21 5 0.18 22 12 0.43 ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40 Consensus pattern (20 bp): TAGTATCGATACTTCTATAC Found at i:812541 original size:55 final size:55 Alignment explanation
Indices: 812466--812733 Score: 394 Period size: 55 Copynumber: 4.9 Consensus size: 55 812456 ACCACTACTG * * * * * 812466 AAATTTATATACTTATTATGAATTTCTTAGTTTTTCACAAAAAGTGCCCATACGA 1 AAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGA * * 812521 AAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATATGG 1 AAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGA * * 812576 AAATTCATAAACTCATTATGAATTTCTTAGTTTTGAATACAAAGTGCCCATACGA 1 AAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGA * * * 812631 AAATTAATAAACTCATTATGAATTTCTTAGTTTTGAACACAAAGTGCCCATATGA 1 AAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGA * * 812686 AAATTCA-AAATTCATTATGAATTTCTTAGTTTTTGCACACACAGTGCC 1 AAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACAAAGTGCC 812734 ATTTGGTAAT Statistics Matches: 194, Mismatches: 18, Indels: 2 0.91 0.08 0.01 Matches are distributed among these distances: 54 21 0.11 55 173 0.89 ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36 Consensus pattern (55 bp): AAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGA Found at i:816220 original size:55 final size:55 Alignment explanation
Indices: 816135--816407 Score: 413 Period size: 55 Copynumber: 4.9 Consensus size: 55 816125 CTACCACTAC * * * 816135 GGAAATTCATATACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGTCCATACA 1 GGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATA-A * 816191 -GAAATTCATAAACTTATTATGAATTTCTTAGCTTTTTGCACACAAAGTGCCCATAA 1 GGAAATTCATAAACTCATTATGAATTTCTTAG--TTTTGCACACAAAGTGCCCATAA * 816247 GGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTTCCCATAA 1 GGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATAA * * * 816302 GGAAATTTATAAACTCATTATGAATTTCTTGGTTTTGCACACAAAGTGCCCATAC 1 GGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATAA * * 816357 GGAAATTCATAAACTCATTATAAATTTCTTAGTTTTTGCACACACAGTGCC 1 GGAAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACAAAGTGCC 816408 ATTTGGTAAT Statistics Matches: 201, Mismatches: 12, Indels: 8 0.91 0.05 0.04 Matches are distributed among these distances: 55 132 0.66 56 18 0.09 57 51 0.25 ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36 Consensus pattern (55 bp): GGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATAA Found at i:825030 original size:17 final size:14 Alignment explanation
Indices: 824996--825032 Score: 51 Period size: 14 Copynumber: 2.8 Consensus size: 14 824986 AAATGCATAC 824996 ACATATCATATAAT 1 ACATATCATATAAT * 825010 ACATATCATA-ATT 1 ACATATCATATAAT 825023 ACATA-CATAT 1 ACATATCATAT 825033 TGAACCAATC Statistics Matches: 21, Mismatches: 1, Indels: 3 0.84 0.04 0.12 Matches are distributed among these distances: 12 4 0.19 13 7 0.33 14 10 0.48 ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35 Consensus pattern (14 bp): ACATATCATATAAT Found at i:825427 original size:40 final size:39 Alignment explanation
Indices: 825383--825461 Score: 149 Period size: 40 Copynumber: 2.0 Consensus size: 39 825373 AGTACATAGA 825383 GGTTGTGCACAATGTTGTCACCACAGCTCGTATAAATCCC 1 GGTTGTGCACAATGTTGTCACCACAGCTC-TATAAATCCC 825423 GGTTGTGCACAATGTTGTCACCACAGCTCTATAAATCCC 1 GGTTGTGCACAATGTTGTCACCACAGCTCTATAAATCCC 825462 ACTAGGGGCG Statistics Matches: 39, Mismatches: 0, Indels: 1 0.98 0.00 0.03 Matches are distributed among these distances: 39 10 0.26 40 29 0.74 ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28 Consensus pattern (39 bp): GGTTGTGCACAATGTTGTCACCACAGCTCTATAAATCCC Found at i:825510 original size:18 final size:18 Alignment explanation
Indices: 825483--825551 Score: 77 Period size: 18 Copynumber: 3.8 Consensus size: 18 825473 GTAGAATTTA * 825483 TCCCGTAGGACCACTATG 1 TCCCGAAGGACCACTATG * 825501 TCCCGAAGGACCACTGTG 1 TCCCGAAGGACCACTATG * * 825519 TCCCGAACGACCAGTATG 1 TCCCGAAGGACCACTATG * 825537 -CCTTGAAGGACCACT 1 TCC-CGAAGGACCACT 825552 GATAATCCCT Statistics Matches: 42, Mismatches: 8, Indels: 2 0.81 0.15 0.04 Matches are distributed among these distances: 17 2 0.05 18 40 0.95 ACGTcount: A:0.25, C:0.33, G:0.23, T:0.19 Consensus pattern (18 bp): TCCCGAAGGACCACTATG Found at i:828540 original size:30 final size:31 Alignment explanation
Indices: 828500--828568 Score: 81 Period size: 30 Copynumber: 2.3 Consensus size: 31 828490 AAATTATCTC 828500 TTTA-TTTTTGT-TATAACTTATTAAATAT-T 1 TTTATTTTTTGTCT-TAACTTATTAAATATAT * * 828529 TTTATTTTTTGTCTTAATTTATTAATTATAT 1 TTTATTTTTTGTCTTAACTTATTAAATATAT * 828560 TTTGTTTTT 1 TTTATTTTT 828569 ATTTTAATGT Statistics Matches: 34, Mismatches: 3, Indels: 4 0.83 0.07 0.10 Matches are distributed among these distances: 29 4 0.12 30 20 0.59 31 10 0.29 ACGTcount: A:0.25, C:0.03, G:0.04, T:0.68 Consensus pattern (31 bp): TTTATTTTTTGTCTTAACTTATTAAATATAT Found at i:828690 original size:31 final size:31 Alignment explanation
Indices: 828652--828715 Score: 92 Period size: 31 Copynumber: 2.1 Consensus size: 31 828642 ATATAATTAA 828652 ATATTTTACTATTAATTTAATATAAAAATAT 1 ATATTTTACTATTAATTTAATATAAAAATAT * * * * 828683 ATATTTTACTATTATTTTTATTTAGAAATAT 1 ATATTTTACTATTAATTTAATATAAAAATAT 828714 AT 1 AT 828716 TATATTTAAT Statistics Matches: 29, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 31 29 1.00 ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53 Consensus pattern (31 bp): ATATTTTACTATTAATTTAATATAAAAATAT Found at i:828842 original size:36 final size:35 Alignment explanation
Indices: 828762--828882 Score: 114 Period size: 36 Copynumber: 3.6 Consensus size: 35 828752 AAAATATAGT 828762 TTTAATTTAAAATAAGAAT--AA-A-ATATA-TT- 1 TTTAATTTAAAATAAGAATAAAATATATATATTTA * 828791 TTTAA-GTAAATATAAGAATAAAATATTATATATTTA 1 TTTAATTTAAA-ATAAGAATAAAATA-TATATATTTA * * 828827 TTTAATTTAAAATAAGAGTAAAATATATATTTTTA 1 TTTAATTTAAAATAAGAATAAAATATATATATTTA * 828862 TATTAAATTAATAATAA-AATA 1 T-TTAATTTAA-AATAAGAATA 828883 TTTAAATATA Statistics Matches: 75, Mismatches: 6, Indels: 15 0.78 0.06 0.16 Matches are distributed among these distances: 28 4 0.05 29 13 0.17 31 2 0.03 32 1 0.01 34 5 0.07 35 12 0.16 36 29 0.39 37 9 0.12 ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42 Consensus pattern (35 bp): TTTAATTTAAAATAAGAATAAAATATATATATTTA Found at i:828868 original size:31 final size:31 Alignment explanation
Indices: 828724--828883 Score: 123 Period size: 29 Copynumber: 5.1 Consensus size: 31 828714 ATTATATTTA * * * 828724 ATATATTTTTAAAAGTTAATATAATAATAAAAT 1 ATATATTTTT-ATA-TTAAAATAAGAATAAAAT * * 828757 ATA-GTTTTAAT-TTAAAATAAGAAT-AAA- 1 ATATATTTTTATATTAAAATAAGAATAAAAT * 828784 ATATATTTTTA-AGTAAATATAAGAATAAAAT 1 ATATATTTTTATATTAAA-ATAAGAATAAAAT * * 828815 ATTATATATTTATTTAATTTAAAATAAGAGTAAAAT 1 A-TATAT-TTT-TAT-A-TTAAAATAAGAATAAAAT * * 828851 ATATATTTTTATATTAAATTAATAATAAAAT 1 ATATATTTTTATATTAAAATAAGAATAAAAT 828882 AT 1 AT 828884 TTAAATATAT Statistics Matches: 101, Mismatches: 15, Indels: 24 0.72 0.11 0.17 Matches are distributed among these distances: 27 3 0.03 28 12 0.12 29 19 0.19 30 3 0.03 31 19 0.19 32 10 0.10 33 8 0.08 34 4 0.04 35 5 0.05 36 14 0.14 37 4 0.04 ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42 Consensus pattern (31 bp): ATATATTTTTATATTAAAATAAGAATAAAAT Found at i:830626 original size:16 final size:17 Alignment explanation
Indices: 830605--830656 Score: 67 Period size: 15 Copynumber: 3.3 Consensus size: 17 830595 TAAGAAATAC 830605 AAATATTTAAAAT-TTA 1 AAATATTTAAAATATTA 830621 AAATA-TTAAAATATTA 1 AAATATTTAAAATATTA * 830637 AAA-ATTT-AAATATAA 1 AAATATTTAAAATATTA 830652 AAATA 1 AAATA 830657 CCATTAATTA Statistics Matches: 32, Mismatches: 1, Indels: 6 0.82 0.03 0.15 Matches are distributed among these distances: 15 18 0.56 16 14 0.44 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (17 bp): AAATATTTAAAATATTA Found at i:830631 original size:8 final size:8 Alignment explanation
Indices: 830605--830656 Score: 63 Period size: 8 Copynumber: 6.6 Consensus size: 8 830595 TAAGAAATAC 830605 AAATATTTA 1 AAATA-TTA 830614 AAAT-TTA 1 AAATATTA 830621 AAATATTA 1 AAATATTA 830629 AAATATTA 1 AAATATTA * 830637 AAA-ATTT 1 AAATATTA * 830644 AAATATAA 1 AAATATTA 830652 AAATA 1 AAATA 830657 CCATTAATTA Statistics Matches: 38, Mismatches: 3, Indels: 5 0.83 0.07 0.11 Matches are distributed among these distances: 7 13 0.34 8 21 0.55 9 4 0.11 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (8 bp): AAATATTA Found at i:830647 original size:23 final size:24 Alignment explanation
Indices: 830605--830656 Score: 79 Period size: 24 Copynumber: 2.2 Consensus size: 24 830595 TAAGAAATAC * * 830605 AAATATTTAAAATTTAAAATATTA 1 AAATATTAAAAATTTAAAATATAA 830629 AAATATTAAAAATTT-AAATATAA 1 AAATATTAAAAATTTAAAATATAA 830652 AAATA 1 AAATA 830657 CCATTAATTA Statistics Matches: 26, Mismatches: 2, Indels: 1 0.90 0.07 0.03 Matches are distributed among these distances: 23 12 0.46 24 14 0.54 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (24 bp): AAATATTAAAAATTTAAAATATAA Found at i:839545 original size:16 final size:14 Alignment explanation
Indices: 839516--839605 Score: 67 Period size: 15 Copynumber: 6.0 Consensus size: 14 839506 GCTTAAACTT 839516 AAAAATTAAAATATA 1 AAAAATT-AAATATA 839531 AAAATATTCAAATATTA 1 AAAA-ATT-AAATA-TA 839548 AAAAATTAAATAT- 1 AAAAATTAAATATA * * 839561 -AAAATAAAATAAA 1 AAAAATTAAATATA 839574 TAAAAATTAAATTACTA 1 -AAAAATTAAA-TA-TA * 839591 TACAAATTAAATATA 1 -AAAAATTAAATATA 839606 TATATGTTAA Statistics Matches: 62, Mismatches: 6, Indels: 14 0.76 0.07 0.17 Matches are distributed among these distances: 12 10 0.16 14 1 0.02 15 19 0.31 16 15 0.24 17 17 0.27 ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30 Consensus pattern (14 bp): AAAAATTAAATATA Found at i:839575 original size:31 final size:32 Alignment explanation
Indices: 839516--839575 Score: 79 Period size: 31 Copynumber: 1.9 Consensus size: 32 839506 GCTTAAACTT * * 839516 AAAAATTAAAATATAAAAATATTCAAATATTA 1 AAAAATTAAAATATAAAAAAAATCAAATATTA 839548 AAAAATT-AAATATAAAATAAAAT-AAATA 1 AAAAATTAAAATATAAAA-AAAATCAAATA 839576 AAAATTAAAT Statistics Matches: 25, Mismatches: 2, Indels: 3 0.83 0.07 0.10 Matches are distributed among these distances: 31 15 0.60 32 10 0.40 ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28 Consensus pattern (32 bp): AAAAATTAAAATATAAAAAAAATCAAATATTA Found at i:839597 original size:27 final size:28 Alignment explanation
Indices: 839548--839603 Score: 71 Period size: 27 Copynumber: 2.0 Consensus size: 28 839538 TCAAATATTA 839548 AAAAATTAAATATAAAATAAAA-TAAAT 1 AAAAATTAAATATAAAATAAAATTAAAT ** 839575 AAAAATTAAAT-TACTATACAAATTAAAT 1 AAAAATTAAATATAAAATA-AAATTAAAT 839603 A 1 A 839604 TATATATGTT Statistics Matches: 25, Mismatches: 2, Indels: 3 0.83 0.07 0.10 Matches are distributed among these distances: 26 5 0.20 27 14 0.56 28 6 0.24 ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29 Consensus pattern (28 bp): AAAAATTAAATATAAAATAAAATTAAAT Found at i:839609 original size:17 final size:16 Alignment explanation
Indices: 839517--839609 Score: 58 Period size: 17 Copynumber: 6.1 Consensus size: 16 839507 CTTAAACTTA * 839517 AAAATTAAA-ATATAA 1 AAAATTAAATATATAT * 839532 AAATATTCAAATAT-TAA 1 AAA-ATT-AAATATATAT 839549 AAAATT--A-A-ATAT 1 AAAATTAAATATATAT * * 839561 AAAATAAAATAAATA- 1 AAAATTAAATATATAT 839576 AAAATTAAAT-TACTAT 1 AAAATTAAATATA-TAT 839592 ACAAATTAAATATATAT 1 A-AAATTAAATATATAT 839609 A 1 A 839610 TGTTAAGAAT Statistics Matches: 62, Mismatches: 4, Indels: 22 0.70 0.05 0.25 Matches are distributed among these distances: 12 8 0.13 13 1 0.02 14 2 0.03 15 15 0.24 16 10 0.16 17 22 0.35 18 4 0.06 ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31 Consensus pattern (16 bp): AAAATTAAATATATAT Found at i:839623 original size:24 final size:22 Alignment explanation
Indices: 839594--839656 Score: 63 Period size: 24 Copynumber: 2.7 Consensus size: 22 839584 ATTACTATAC 839594 AAATTAAATATATATATGTTAAGA 1 AAATTAAATATATATAT-TTAA-A * * 839618 ATATTAAAAATATTATTATTTAAA 1 AAATTAAATATA-TA-TATTTAAA * 839642 AAAATAAATATATAT 1 AAATTAAATATATAT 839657 CATAAGCTTT Statistics Matches: 32, Mismatches: 5, Indels: 6 0.74 0.12 0.14 Matches are distributed among these distances: 22 1 0.03 23 2 0.06 24 20 0.62 25 6 0.19 26 3 0.09 ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40 Consensus pattern (22 bp): AAATTAAATATATATATTTAAA Found at i:840934 original size:14 final size:16 Alignment explanation
Indices: 840915--840946 Score: 50 Period size: 15 Copynumber: 2.1 Consensus size: 16 840905 GTTAATTTTA 840915 TTTTT-ATATTTA-AT 1 TTTTTAATATTTATAT 840929 TTTTTAATATTTATAT 1 TTTTTAATATTTATAT 840945 TT 1 TT 840947 AAAAATTTAA Statistics Matches: 16, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 14 5 0.31 15 7 0.44 16 4 0.25 ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72 Consensus pattern (16 bp): TTTTTAATATTTATAT Found at i:840955 original size:21 final size:21 Alignment explanation
Indices: 840908--840974 Score: 62 Period size: 21 Copynumber: 3.1 Consensus size: 21 840898 ACTAATAGTT * * * 840908 AATTTTATTTTTATATTTAAT 1 AATTTAATATTTATATTTAAA ** 840929 TTTTTAATATTTATATTTAAA 1 AATTTAATATTTATATTTAAA * 840950 AATTTAAAATATTTGTATTTAAA 1 AATTT--AATATTTATATTTAAA 840973 AA 1 AA 840975 CCAAATAAGT Statistics Matches: 36, Mismatches: 8, Indels: 2 0.78 0.17 0.04 Matches are distributed among these distances: 21 19 0.53 23 17 0.47 ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57 Consensus pattern (21 bp): AATTTAATATTTATATTTAAA Found at i:843602 original size:20 final size:20 Alignment explanation
Indices: 843573--843611 Score: 60 Period size: 20 Copynumber: 1.9 Consensus size: 20 843563 ATTTCACCAC * 843573 ATGCAACTATATGCTCCTAA 1 ATGCAACTATATGATCCTAA * 843593 ATGCATCTATATGATCCTA 1 ATGCAACTATATGATCCTA 843612 TATGAGCTTT Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 20 17 1.00 ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33 Consensus pattern (20 bp): ATGCAACTATATGATCCTAA Found at i:853369 original size:35 final size:35 Alignment explanation
Indices: 853323--853392 Score: 140 Period size: 35 Copynumber: 2.0 Consensus size: 35 853313 TAGATATTAC 853323 ATTGTACTTATCCCAGATTAATAAAATAAAAACCT 1 ATTGTACTTATCCCAGATTAATAAAATAAAAACCT 853358 ATTGTACTTATCCCAGATTAATAAAATAAAAACCT 1 ATTGTACTTATCCCAGATTAATAAAATAAAAACCT 853393 TTGGGTAAGA Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 35 35 1.00 ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31 Consensus pattern (35 bp): ATTGTACTTATCCCAGATTAATAAAATAAAAACCT Found at i:855590 original size:4 final size:4 Alignment explanation
Indices: 855581--855638 Score: 55 Period size: 4 Copynumber: 14.0 Consensus size: 4 855571 ATGTTAGAAG * * * 855581 AAAT AAAT AAAT AAAT AAA- ATACT AAAT AAGT CAAAT GAAAT GAAT AAAT 1 AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT -AAAT -AAAT AAAT AAAT 855631 AAAT AAAT 1 AAAT AAAT 855639 TAATCAAAGA Statistics Matches: 44, Mismatches: 7, Indels: 6 0.77 0.12 0.11 Matches are distributed among these distances: 3 1 0.02 4 35 0.80 5 8 0.18 ACGTcount: A:0.67, C:0.03, G:0.05, T:0.24 Consensus pattern (4 bp): AAAT Found at i:858101 original size:92 final size:92 Alignment explanation
Indices: 857850--858105 Score: 460 Period size: 91 Copynumber: 2.8 Consensus size: 92 857840 TAGAGCTGGA ** 857850 AAATTGTTTATTGACAAACCAGCGGTCCTTCGTCACGAAGTTGAACTTGCGTTGTCTGGAGTCCA 1 AAATTG-TTATTGAC-AACCAGCGGTCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA 857915 ATATCCTTCGTTGTGAAGTTGAAATTGGG 64 ATATCCTTCGTTGTGAAGTTGAAATTGGG * 857944 AAA-TGTTATTGACAACCAGCGGTCCCTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT 1 AAATTGTTATTGACAACCAGCGGTCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT 858008 ATCCTTCGTTGTGAAGTTGAAATTGGG 66 ATCCTTCGTTGTGAAGTTGAAATTGGG 858035 AAATTGTTATTGACAACCAGCGGTCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT 1 AAATTGTTATTGACAACCAGCGGTCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT 858100 ATCCTT 66 ATCCTT 858106 TGTCTGGAGT Statistics Matches: 157, Mismatches: 4, Indels: 4 0.95 0.02 0.02 Matches are distributed among these distances: 91 78 0.50 92 74 0.47 93 2 0.01 94 3 0.02 ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33 Consensus pattern (92 bp): AAATTGTTATTGACAACCAGCGGTCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT ATCCTTCGTTGTGAAGTTGAAATTGGG Found at i:858110 original size:21 final size:21 Alignment explanation
Indices: 858084--858126 Score: 86 Period size: 21 Copynumber: 2.0 Consensus size: 21 858074 TGAACTTGCG 858084 TTGTCTGGAGTCCAATATCCT 1 TTGTCTGGAGTCCAATATCCT 858105 TTGTCTGGAGTCCAATATCCT 1 TTGTCTGGAGTCCAATATCCT 858126 T 1 T 858127 CGTTGTGAAG Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 21 22 1.00 ACGTcount: A:0.19, C:0.23, G:0.19, T:0.40 Consensus pattern (21 bp): TTGTCTGGAGTCCAATATCCT Found at i:858230 original size:207 final size:206 Alignment explanation
Indices: 857901--858614 Score: 949 Period size: 186 Copynumber: 3.6 Consensus size: 206 857891 TGAACTTGCG 857901 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATGTTATTGACAACCAGCGG 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATGTTATTGACAACCAGCGG 857966 TCCCTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAAT 66 TCCCTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAAT 858031 TGGGAAATTG-TTATTGACAACCAGCGGT-CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG 131 TGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG 858094 TCCAATATCCT 196 TCCAATATCCT 858105 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAA-TG-TTATTGACAACCAGC 858170 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA 64 GGTCCC-TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA 858235 AATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG 128 AATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG 858300 GAGTCCAATATCCT 193 GAGTCCAATATCCT * * * 858314 TCGT-T---GT--GA-A------G-T-TGAAATTGGGAAATT--G---T-TTATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTT--GAAATTGGGAAATGTTATTGACAACCAGC * 858358 GGTCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC-ATATCCTTCGTTGTGAAGTTGAA 64 GGTCCCTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAA * 858422 ATTGGGAAATTGTATATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG 129 ATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG 858487 AGTCCAATATCCT 194 AGTCCAATATCCT * * * * * 858500 TCGT-T---GT--GA-A------G-T-TGAAATTG-----GGAAATTGTATATTGACAACCAGCG 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATGT-TATTGACAACCAGCG * * 858545 GTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAA 65 GTCCC-TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAA 858610 ATTGG 129 ATTGG 858615 CTCTGGGTAA Statistics Matches: 485, Mismatches: 9, Indels: 48 0.89 0.02 0.09 Matches are distributed among these distances: 184 2 0.00 185 1 0.00 186 138 0.28 187 69 0.14 188 47 0.10 190 1 0.00 194 7 0.01 195 1 0.00 196 7 0.01 202 1 0.00 203 1 0.00 204 46 0.09 205 4 0.01 206 21 0.04 207 71 0.15 208 19 0.04 209 49 0.10 ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34 Consensus pattern (206 bp): TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATGTTATTGACAACCAGCGG TCCCTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAAT TGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG TCCAATATCCT Found at i:858266 original size:94 final size:94 Alignment explanation
Indices: 858105--858614 Score: 970 Period size: 94 Copynumber: 5.4 Consensus size: 94 858095 CCAATATCCT 858105 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 858170 GGTCCCTTCGTCGTGAAGTTGAACTTGCG 66 GGTCCCTTCGTCGTGAAGTTGAACTTGCG 858199 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 858264 GGTCCCTTCGTCGTGAAGTTGAACTTGCG 66 GGTCCCTTCGTCGTGAAGTTGAACTTGCG 858293 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 858358 GGT-CCTTCGTCGTGAAGTTGAACTTGCG 66 GGTCCCTTCGTCGTGAAGTTGAACTTGCG * 858386 TTGTCTGGAGTCC-ATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTATATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 858450 GGTCCCTTCGTCGTGAAGTTGAACTTGCG 66 GGTCCCTTCGTCGTGAAGTTGAACTTGCG * 858479 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTATATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC * 858544 GGTCCCTTCGTCGTGAAGTTGAACTTGCA 66 GGTCCCTTCGTCGTGAAGTTGAACTTGCG * 858573 TTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGG 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG 858615 CTCTGGGTAA Statistics Matches: 411, Mismatches: 3, Indels: 4 0.98 0.01 0.01 Matches are distributed among these distances: 92 53 0.13 93 76 0.18 94 282 0.69 ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34 Consensus pattern (94 bp): TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC GGTCCCTTCGTCGTGAAGTTGAACTTGCG Found at i:858469 original size:186 final size:188 Alignment explanation
Indices: 858105--858614 Score: 970 Period size: 186 Copynumber: 2.7 Consensus size: 188 858095 CCAATATCCT 858105 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 858170 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA 66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA * 858235 AATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG 131 AATTGGGAAATTGTATATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG 858293 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC 858358 GGT-CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC-ATATCCTTCGTTGTGAAGTTGA 66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA 858421 AATTGGGAAATTGTATATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG 131 AATTGGGAAATTGTATATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG * 858479 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTATATTGACAACCAGC 1 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC * * 858544 GGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGA 66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA 858609 AATTGG 131 AATTGG 858615 CTCTGGGTAA Statistics Matches: 316, Mismatches: 4, Indels: 4 0.98 0.01 0.01 Matches are distributed among these distances: 186 146 0.46 187 75 0.24 188 95 0.30 ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34 Consensus pattern (188 bp): TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGC GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA AATTGGGAAATTGTATATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG Found at i:859403 original size:9 final size:9 Alignment explanation
Indices: 859378--859423 Score: 74 Period size: 9 Copynumber: 5.0 Consensus size: 9 859368 TATTTTCTTT 859378 TCTTTTTTC 1 TCTTTTTTC 859387 TCTCTTTTTC 1 TCT-TTTTTC 859397 TCTTTTTTC 1 TCTTTTTTC 859406 TCTTTTTTC 1 TCTTTTTTC * 859415 TATTTTTTC 1 TCTTTTTTC 859424 CAATTTAGGG Statistics Matches: 35, Mismatches: 1, Indels: 2 0.92 0.03 0.05 Matches are distributed among these distances: 9 26 0.74 10 9 0.26 ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76 Consensus pattern (9 bp): TCTTTTTTC Found at i:866596 original size:17 final size:18 Alignment explanation
Indices: 866576--866609 Score: 52 Period size: 17 Copynumber: 1.9 Consensus size: 18 866566 AAACATGGAG 866576 AATATAAAATA-AAAACA 1 AATATAAAATATAAAACA * 866593 AATATGAAATATAAAAC 1 AATATAAAATATAAAAC 866610 GTAAAATATG Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 17 10 0.67 18 5 0.33 ACGTcount: A:0.71, C:0.06, G:0.03, T:0.21 Consensus pattern (18 bp): AATATAAAATATAAAACA Found at i:869869 original size:4 final size:4 Alignment explanation
Indices: 869805--869834 Score: 60 Period size: 4 Copynumber: 7.5 Consensus size: 4 869795 AAAATGTTAG 869805 AATA AATA AATA AATA AATA AATA AATA AA 1 AATA AATA AATA AATA AATA AATA AATA AA 869835 ATACTAAATA Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 26 1.00 ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23 Consensus pattern (4 bp): AATA Found at i:877905 original size:16 final size:16 Alignment explanation
Indices: 877884--877916 Score: 66 Period size: 16 Copynumber: 2.1 Consensus size: 16 877874 TGTATGTATC 877884 TGTGTGTGGATATATG 1 TGTGTGTGGATATATG 877900 TGTGTGTGGATATATG 1 TGTGTGTGGATATATG 877916 T 1 T 877917 ATGCGTGTGA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 17 1.00 ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45 Consensus pattern (16 bp): TGTGTGTGGATATATG Found at i:877924 original size:20 final size:19 Alignment explanation
Indices: 877876--877925 Score: 61 Period size: 16 Copynumber: 2.7 Consensus size: 19 877866 GTATTGCATG 877876 TATGTATCTGTGTGTGGATA 1 TATGTATC-GTGTGTGGATA 877896 TATG--T-GTGTGTGGATA 1 TATGTATCGTGTGTGGATA 877912 TATGTATGCGTGTG 1 TATGTAT-CGTGTG 877926 AACATTGCTT Statistics Matches: 26, Mismatches: 0, Indels: 8 0.76 0.00 0.24 Matches are distributed among these distances: 16 15 0.58 18 2 0.08 20 9 0.35 ACGTcount: A:0.18, C:0.04, G:0.34, T:0.44 Consensus pattern (19 bp): TATGTATCGTGTGTGGATA Found at i:879069 original size:3 final size:3 Alignment explanation
Indices: 879061--879116 Score: 89 Period size: 3 Copynumber: 19.0 Consensus size: 3 879051 TTTGACCTTT 879061 TTA TTA TTA TT- TTAA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA 1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA 879105 TTA TTA TTA TTA 1 TTA TTA TTA TTA 879117 CATGCCCAAA Statistics Matches: 50, Mismatches: 0, Indels: 6 0.89 0.00 0.11 Matches are distributed among these distances: 2 4 0.08 3 44 0.88 4 2 0.04 ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66 Consensus pattern (3 bp): TTA Found at i:881985 original size:16 final size:15 Alignment explanation
Indices: 881938--881993 Score: 58 Period size: 16 Copynumber: 3.5 Consensus size: 15 881928 TAGTTGGACT 881938 GAAAATAACCTGAACC 1 GAAAATAACCT-AACC ** * 881954 GAAAGCAACCCAAACC 1 GAAAATAA-CCTAACC 881970 GAAAATAACTCTAACC 1 GAAAATAAC-CTAACC 881986 GAAAATAA 1 GAAAATAA 881994 TCCGAATATG Statistics Matches: 32, Mismatches: 6, Indels: 4 0.76 0.14 0.10 Matches are distributed among these distances: 15 1 0.03 16 29 0.91 17 2 0.06 ACGTcount: A:0.54, C:0.25, G:0.11, T:0.11 Consensus pattern (15 bp): GAAAATAACCTAACC Found at i:883012 original size:21 final size:21 Alignment explanation
Indices: 882988--883028 Score: 82 Period size: 21 Copynumber: 2.0 Consensus size: 21 882978 GATTGCTGCC 882988 AGGGTACCGATACCCTGCTAT 1 AGGGTACCGATACCCTGCTAT 883009 AGGGTACCGATACCCTGCTA 1 AGGGTACCGATACCCTGCTA 883029 CAGTACTTCT Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 21 20 1.00 ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22 Consensus pattern (21 bp): AGGGTACCGATACCCTGCTAT Found at i:888015 original size:18 final size:19 Alignment explanation
Indices: 887978--888015 Score: 51 Period size: 20 Copynumber: 2.0 Consensus size: 19 887968 CATTCATGGG * 887978 GTATCGATACCTGGAGGGTA 1 GTATCGATACC-GAAGGGTA 887998 GTATCGATACC-AAGGGTA 1 GTATCGATACCGAAGGGTA 888016 CCGATACTAA Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 18 6 0.35 20 11 0.65 ACGTcount: A:0.29, C:0.16, G:0.32, T:0.24 Consensus pattern (19 bp): GTATCGATACCGAAGGGTA Found at i:888782 original size:21 final size:21 Alignment explanation
Indices: 888758--888815 Score: 71 Period size: 21 Copynumber: 2.7 Consensus size: 21 888748 ATCCTTAAGG * 888758 AGTGGTCCTTTGGGACATCTA 1 AGTGGTCCTTTGGGACATATA * * 888779 AGTGGTCCTTAGGGATATATA 1 AGTGGTCCTTTGGGACATATA * 888800 TGTGTGTCCTTTGGGA 1 AGTG-GTCCTTTGGGA 888816 TAAGTTTAAG Statistics Matches: 31, Mismatches: 5, Indels: 1 0.84 0.14 0.03 Matches are distributed among these distances: 21 21 0.68 22 10 0.32 ACGTcount: A:0.19, C:0.14, G:0.31, T:0.36 Consensus pattern (21 bp): AGTGGTCCTTTGGGACATATA Found at i:895314 original size:21 final size:21 Alignment explanation
Indices: 895290--895335 Score: 56 Period size: 21 Copynumber: 2.2 Consensus size: 21 895280 CTTTCAGGAT * * 895290 ATATATGTAATCCTTTGGAAC 1 ATATATGCAATCCTTTAGAAC * * 895311 ATATATGCAGTTCTTTAGAAC 1 ATATATGCAATCCTTTAGAAC 895332 ATAT 1 ATAT 895336 TTTTTCATTT Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 21 21 1.00 ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39 Consensus pattern (21 bp): ATATATGCAATCCTTTAGAAC Found at i:900469 original size:23 final size:23 Alignment explanation
Indices: 900422--900469 Score: 60 Period size: 23 Copynumber: 2.1 Consensus size: 23 900412 AAAATTTCAG * * ** 900422 GAGCTCGATTGAAGCTCGATTTT 1 GAGCTCGATTCAAGATCGAAATT 900445 GAGCTCGATTCAAGATCGAAATT 1 GAGCTCGATTCAAGATCGAAATT 900468 GA 1 GA 900470 TTCAAGCTCG Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 23 21 1.00 ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29 Consensus pattern (23 bp): GAGCTCGATTCAAGATCGAAATT Found at i:904656 original size:15 final size:15 Alignment explanation
Indices: 904633--904670 Score: 58 Period size: 15 Copynumber: 2.5 Consensus size: 15 904623 AATATAGCAT 904633 GACCCGAAATGACTC 1 GACCCGAAATGACTC * * 904648 GATCCGAAATGATTC 1 GACCCGAAATGACTC 904663 GACCCGAA 1 GACCCGAA 904671 CTTGATTTGA Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 15 20 1.00 ACGTcount: A:0.34, C:0.29, G:0.21, T:0.16 Consensus pattern (15 bp): GACCCGAAATGACTC Found at i:905771 original size:19 final size:19 Alignment explanation
Indices: 905714--905771 Score: 55 Period size: 20 Copynumber: 3.0 Consensus size: 19 905704 TGTATTATTT * 905714 TTAAAATTTTAATAAAAATA 1 TTAAATTTTTAATAAAAA-A * ** 905734 TTAAATTTATAATTGAAAA 1 TTAAATTTTTAATAAAAAA 905753 -TAAATTTTTTAATAAAAAA 1 TTAAA-TTTTTAATAAAAAA 905772 AAGTATTTCT Statistics Matches: 30, Mismatches: 7, Indels: 3 0.75 0.17 0.08 Matches are distributed among these distances: 18 4 0.13 19 12 0.40 20 14 0.47 ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41 Consensus pattern (19 bp): TTAAATTTTTAATAAAAAA Found at i:908664 original size:21 final size:20 Alignment explanation
Indices: 908639--908677 Score: 60 Period size: 21 Copynumber: 1.9 Consensus size: 20 908629 TAAGGCATTA 908639 AACATCATAAACAAAACAAAC 1 AACATCATAAA-AAAACAAAC * 908660 AACATCATACAAAAACAA 1 AACATCATAAAAAAACAA 908678 CCATCCATTA Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 20 7 0.41 21 10 0.59 ACGTcount: A:0.67, C:0.23, G:0.00, T:0.10 Consensus pattern (20 bp): AACATCATAAAAAAACAAAC Found at i:916280 original size:16 final size:16 Alignment explanation
Indices: 916261--916312 Score: 54 Period size: 16 Copynumber: 3.3 Consensus size: 16 916251 TATACAATTT 916261 ACATATTCATATAATC 1 ACATATTCATATAATC * 916277 ACATAGTTCA-AT-TTC 1 ACATA-TTCATATAATC ** 916292 ACATAGACATATAATC 1 ACATATTCATATAATC 916308 ACATA 1 ACATA 916313 GATCATGTAA Statistics Matches: 29, Mismatches: 4, Indels: 6 0.74 0.10 0.15 Matches are distributed among these distances: 14 2 0.07 15 9 0.31 16 14 0.48 17 4 0.14 ACGTcount: A:0.44, C:0.19, G:0.04, T:0.33 Consensus pattern (16 bp): ACATATTCATATAATC Found at i:916303 original size:31 final size:30 Alignment explanation
Indices: 916255--916313 Score: 91 Period size: 31 Copynumber: 1.9 Consensus size: 30 916245 ACCATTTATA ** 916255 CAATTTACATATTCATATAATCACATAGTT 1 CAATTTACATAGACATATAATCACATAGTT 916285 CAATTTCACATAGACATATAATCACATAG 1 CAATTT-ACATAGACATATAATCACATAG 916314 ATCATGTAAT Statistics Matches: 26, Mismatches: 2, Indels: 1 0.90 0.07 0.03 Matches are distributed among these distances: 30 6 0.23 31 20 0.77 ACGTcount: A:0.42, C:0.19, G:0.05, T:0.34 Consensus pattern (30 bp): CAATTTACATAGACATATAATCACATAGTT Found at i:916313 original size:16 final size:16 Alignment explanation
Indices: 916268--916329 Score: 58 Period size: 16 Copynumber: 3.9 Consensus size: 16 916258 TTTACATATT * 916268 CATATAATCACATAGTT 1 CATATAATCACATAG-A * 916285 CA-AT-TTCACATAGA 1 CATATAATCACATAGA 916299 CATATAATCACATAGA 1 CATATAATCACATAGA * 916315 TCATGTAAT-ACATAG 1 -CATATAATCACATAG 916330 GGTGACATGT Statistics Matches: 38, Mismatches: 4, Indels: 7 0.78 0.08 0.14 Matches are distributed among these distances: 14 2 0.05 15 10 0.26 16 17 0.45 17 9 0.24 ACGTcount: A:0.44, C:0.18, G:0.08, T:0.31 Consensus pattern (16 bp): CATATAATCACATAGA Found at i:925547 original size:44 final size:44 Alignment explanation
Indices: 925408--925565 Score: 169 Period size: 45 Copynumber: 3.5 Consensus size: 44 925398 CCAAGGATTT * * 925408 GATTATTGTGTTGCGGAAATTAAAATCAAAGGATTAGTTCCTTTC 1 GATTATTG-GTTGTGAAAATTAAAATCAAAGGATTAGTTCCTTTC * 925453 AATTATTGGATTGAT-AAAATTAAAATCAAAGGATTAGTTCCTTTC 1 GATTATTGG-TTG-TGAAAATTAAAATCAAAGGATTAGTTCCTTTC * * * 925498 CATTATTGAGTTGTGAAAAAT-AAATCAAAGGATTAATTCCTTGT- 1 GATTATTG-GTTGTGAAAATTAAAATCAAAGGATTAGTTCCTT-TC ** 925542 GATTATTGGGTTGCAAAAATTAAA 1 GATTATT-GGTTGTGAAAATTAAA 925566 GTATTAATTT Statistics Matches: 96, Mismatches: 10, Indels: 14 0.80 0.08 0.12 Matches are distributed among these distances: 44 37 0.39 45 58 0.60 46 1 0.01 ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37 Consensus pattern (44 bp): GATTATTGGTTGTGAAAATTAAAATCAAAGGATTAGTTCCTTTC Found at i:925938 original size:58 final size:57 Alignment explanation
Indices: 925784--926234 Score: 462 Period size: 58 Copynumber: 7.8 Consensus size: 57 925774 CTTAAGAATA * * * 925784 TTGTAAGTAAAATAAATAGTTTG-ATTTATTTCCTTGAGAATCTTAAATGATTCTAACT 1 TTGTAAG-AAAATAAATTG-TTGAATTTATTTTCTTGAGAATCTTGAATGATTCTAACT * * ** * * * * 925842 TTGTATG-GAATAAATAATTGAATTTATTTCCTTCAAAATCTTGAACGATTCTAACT 1 TTGTAAGAAAATAAATTGTTGAATTTATTTTCTTGAGAATCTTGAATGATTCTAACT * * * * 925898 TTGTAACGAAAATAAATAGTTGAATTTATTTTCTTGAAAATCTTAAATGATTTTAACT 1 TTGTAA-GAAAATAAATTGTTGAATTTATTTTCTTGAGAATCTTGAATGATTCTAACT * * 925956 TTGTCACGAAAATAAATTGTTGAATTTGTTTTCTTGAGAATCTTGAATGATTCTAACT 1 TTGT-AAGAAAATAAATTGTTGAATTTATTTTCTTGAGAATCTTGAATGATTCTAACT ** ** 926014 TCATAAGAAAAATAAATTGTCCAATTTATTTTCTTGAGAATCTTGAATGATTCTAACT 1 TTGTAAG-AAAATAAATTGTTGAATTTATTTTCTTGAGAATCTTGAATGATTCTAACT ** * * * * 926072 TCATAAGAAAAATAAATTGTCT-AATTTATTTTCTTGAGAATCATGGATTATTCTATCT 1 TTGTAAG-AAAATAAATTGT-TGAATTTATTTTCTTGAGAATCTTGAATGATTCTAACT * * * * * 926130 TT-TAAAAGAAATCAATTGTTAAATTTATTTTCTTGAGAATCTTAAATGATTCT-ATT 1 TTGTAAGA-AAATAAATTGTTGAATTTATTTTCTTGAGAATCTTGAATGATTCTAACT * ** 926186 TTGTTAAAGAAAATAAATTGTTAAATTTATTTTCTCAAGAATCTTGAAT 1 TTG-T-AAGAAAATAAATTGTTGAATTTATTTTCTTGAGAATCTTGAAT 926235 AAAGAAATAA Statistics Matches: 336, Mismatches: 46, Indels: 22 0.83 0.11 0.05 Matches are distributed among these distances: 55 3 0.01 56 49 0.15 57 44 0.13 58 236 0.70 59 4 0.01 ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43 Consensus pattern (57 bp): TTGTAAGAAAATAAATTGTTGAATTTATTTTCTTGAGAATCTTGAATGATTCTAACT Found at i:926258 original size:43 final size:44 Alignment explanation
Indices: 926190--926273 Score: 116 Period size: 43 Copynumber: 1.9 Consensus size: 44 926180 TCTATTTTGT * 926190 TAAAGAAAATAAATTGTTAAATTTATTTTCTCAAGAATCTTGAA 1 TAAAGAAAATAAATTGATAAATTTATTTTCTCAAGAATCTTGAA * * * * 926234 TAAAG-AAATAAATTGATGATTTTATTTTCTTATGAATCTT 1 TAAAGAAAATAAATTGATAAATTTATTTTCTCAAGAATCTT 926274 TAATGATTAT Statistics Matches: 35, Mismatches: 5, Indels: 1 0.85 0.12 0.02 Matches are distributed among these distances: 43 30 0.86 44 5 0.14 ACGTcount: A:0.42, C:0.06, G:0.10, T:0.43 Consensus pattern (44 bp): TAAAGAAAATAAATTGATAAATTTATTTTCTCAAGAATCTTGAA Found at i:926314 original size:101 final size:101 Alignment explanation
Indices: 926134--926319 Score: 232 Period size: 101 Copynumber: 1.8 Consensus size: 101 926124 CTATCTTTTA * * * * 926134 AAAGAAATCAATTGTTAAATTTATTTTCTTGAGAATCTTAAATGATTCTATTTTGTTAAAGAAAA 1 AAAGAAATAAATTGATAAATTTATTTTCTTGAGAATCTTAAATGATTATATTTTGTAAAAGAAAA * * 926199 TAAATTGTTAAATTTATTTTCTCAAGAATCTTGAAT 66 TAAATCGTCAAATTTATTTTCTCAAGAATCTTGAAT * * * * * 926235 AAAGAAATAAATTGATGATTTTATTTTCTT-ATGAATCTTTAATGATTATGTCTTT-TAAAAGGA 1 AAAGAAATAAATTGATAAATTTATTTTCTTGA-GAATCTTAAATGATTATAT-TTTGTAAAAGAA * 926298 AATAAATCGTCGAATTTATTTT 64 AATAAATCGTCAAATTTATTTT 926320 TTGATTTGTA Statistics Matches: 71, Mismatches: 12, Indels: 4 0.82 0.14 0.05 Matches are distributed among these distances: 100 1 0.01 101 67 0.94 102 3 0.04 ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44 Consensus pattern (101 bp): AAAGAAATAAATTGATAAATTTATTTTCTTGAGAATCTTAAATGATTATATTTTGTAAAAGAAAA TAAATCGTCAAATTTATTTTCTCAAGAATCTTGAAT Found at i:926341 original size:38 final size:39 Alignment explanation
Indices: 926290--926475 Score: 216 Period size: 39 Copynumber: 4.8 Consensus size: 39 926280 TTATGTCTTT * 926290 TAAAAGGAAATAAATCGTCGAATTTATTTT-TTGATTTG 1 TAAAAGGAAATAAATCGTTGAATTTATTTTCTTGATTTG * * * * 926328 TAAAAGGAAATAAATTGTTGGATTT-TATT-TAGTATTTTG 1 TAAAAGGAAATAAATCGTTGAATTTATTTTCTTG-A-TTTG * ** * * 926367 GAAAAGGAAATAAATTATTGAATTTATTTTCTTGGTTTA 1 TAAAAGGAAATAAATCGTTGAATTTATTTTCTTGATTTG * * 926406 TAAAAGTAAATAAATCGTTGAATTTATTTTCTTGTTTTG 1 TAAAAGGAAATAAATCGTTGAATTTATTTTCTTGATTTG * 926445 TAAAAGGAAATAAATCGTTCAATTTATTTTC 1 TAAAAGGAAATAAATCGTTGAATTTATTTTC 926476 CAATGAGTCT Statistics Matches: 124, Mismatches: 20, Indels: 7 0.82 0.13 0.05 Matches are distributed among these distances: 37 5 0.04 38 23 0.19 39 91 0.73 40 3 0.02 41 2 0.02 ACGTcount: A:0.37, C:0.04, G:0.15, T:0.44 Consensus pattern (39 bp): TAAAAGGAAATAAATCGTTGAATTTATTTTCTTGATTTG Found at i:926625 original size:39 final size:37 Alignment explanation
Indices: 926509--926644 Score: 107 Period size: 39 Copynumber: 3.6 Consensus size: 37 926499 TATGTAAAGG * * 926509 GAAATAAATCGTTTGATTAATTTTCCTATTTTGTAAAAA 1 GAAATAAATCGTTGGATTTATTTTCCTA-TTT-TAAAAA ** * ** * 926548 GAAATAACCCGTTGGACTTATTTTCCCGTTTT---AG 1 GAAATAAATCGTTGGATTTATTTTCCTATTTTAAAAA * 926582 GAAATAAATTGTTGGATTTATTTTCCTATTTCATAAAAA 1 GAAATAAATCGTTGGATTTATTTTCCTATTT--TAAAAA * * * 926621 GAAATAAATCATTGAATTAATTTT 1 GAAATAAATCGTTGGATTTATTTT 926645 TTTGGAATCT Statistics Matches: 73, Mismatches: 19, Indels: 10 0.72 0.19 0.10 Matches are distributed among these distances: 34 26 0.36 36 1 0.01 37 1 0.01 38 3 0.04 39 42 0.58 ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42 Consensus pattern (37 bp): GAAATAAATCGTTGGATTTATTTTCCTATTTTAAAAA Found at i:926644 original size:73 final size:73 Alignment explanation
Indices: 926508--926644 Score: 177 Period size: 73 Copynumber: 1.9 Consensus size: 73 926498 ATATGTAAAG * ** * * * 926508 GGAAATAAATCGTTTGATTAATTTTCCTATTTTGTAAAAAGAAATAACCCGTTGGACTTATTTTC 1 GGAAATAAATCGTTGGATTAATTTTCCTATTTCATAAAAAGAAATAAACCATTGGAATTATTTTC 926573 CCGTTTTA 66 CCGTTTTA * * * 926581 GGAAATAAATTGTTGGATTTATTTTCCTATTTCATAAAAAGAAATAAATCATT-GAATTAATTTT 1 GGAAATAAATCGTTGGATTAATTTTCCTATTTCATAAAAAGAAATAAACCATTGGAATT-ATTTT 926645 TTTGGAATCT Statistics Matches: 54, Mismatches: 9, Indels: 2 0.83 0.14 0.03 Matches are distributed among these distances: 72 4 0.07 73 50 0.93 ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42 Consensus pattern (73 bp): GGAAATAAATCGTTGGATTAATTTTCCTATTTCATAAAAAGAAATAAACCATTGGAATTATTTTC CCGTTTTA Found at i:929315 original size:2 final size:2 Alignment explanation
Indices: 929310--929666 Score: 140 Period size: 2 Copynumber: 188.0 Consensus size: 2 929300 GGTTCTTTTT * * * 929310 TA TA TA -A TA TA CA -A TA TA T- TC TA TA TA T- TA T- TT TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA * * * 929347 T- TG TA TA T- TA TA GTA TT TA TA TA GTA TA TGA TA AA TA TGA TA 1 TA TA TA TA TA TA TA -TA TA TA TA TA -TA TA T-A TA TA TA T-A TA * * 929389 TA GTC T- TA TA TA T- TA TA GTA T- TA TA TA TA T- TA TA GTA TT 1 TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA * 929428 TA TA TA GTA TA TGA TA TA TA TA -A TA TA GTC T- TA TA TA T- TA 1 TA TA TA -TA TA T-A TA TA TA TA TA TA TA -TA TA TA TA TA TA TA * 929468 TA TA GTA TA GTA T- TC TA TA T- TA TA T- TA TA -A TA TA TA T- TA 1 TA TA -TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA * 929507 TA TA T- TA TA TA T- TA TA GTA TA TA TC TA T- TA T- TA TA TA TA 1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA * * 929546 T- TA TA TA GTA T- TA TA TA T- TA TA GTG TA TA TT TA TA T- TA TA 1 TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA * * 929586 TA GCA TA TT TA T- TA T- TA TA TA T- TA TA TA GT- TA TA TA T- TA 1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA * * 929625 TA TA TA T- TA TG TA T- TA T- TA TA TT TA GTA T- TA TA TA T- TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA 929663 TA TA 1 TA TA 929667 ATTACATTTT Statistics Matches: 273, Mismatches: 27, Indels: 110 0.67 0.07 0.27 Matches are distributed among these distances: 1 37 0.14 2 205 0.75 3 31 0.11 ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52 Consensus pattern (2 bp): TA Found at i:929405 original size:5 final size:5 Alignment explanation
Indices: 929397--929760 Score: 118 Period size: 5 Copynumber: 68.4 Consensus size: 5 929387 TATAGTCTTA * * * 929397 TATAT TATAG TATTAT ATATAT TATAG TAT-T TATAT AGTATAT GATAT 1 TATAT TATAT TA-TAT -TATAT TATAT TATAT TATAT --TATAT TATAT * * 929445 ATATAA TATAGT CT-TA- TATAT TATAT AGTATAG TAT-T CTATAT TATAT 1 -TATAT TATA-T -TATAT TATAT TATAT --TATAT TATAT -TATAT TATAT 929493 TATAAT ATATAT TATA- TAT-T ATATAT TATAGT ATATAT CTATTAT TATA- 1 TAT-AT -TATAT TATAT TATAT -TATAT TATA-T -TATAT -TA-TAT TATAT * 929542 TATAT TATA- TAGTATT ATATAT TATAGT GTATATT TATAT TATAT AGCATAT 1 TATAT TATAT TA-TA-T -TATAT TATA-T -TATA-T TATAT TATAT --TATAT * 929594 T-TAT TAT-T ATATAT TATA- TAGT-T ATATAT TATA- TATAT TAT-G 1 TATAT TATAT -TATAT TATAT TA-TAT -TATAT TATAT TATAT TATAT * * 929636 TATTAT TATAT T-TAG TAT-T ATATAT TATA- TA-AT TACATTT TATAT 1 TA-TAT TATAT TATAT TATAT -TATAT TATAT TATAT T--ATAT TATAT * * 929681 T-TAT TATAT ACTAGTAT TATAT TATAA TATTAT TATGT TATAT TATTAT 1 TATAT TATAT --TA-TAT TATAT TATAT TA-TAT TATAT TATAT TA-TAT * 929730 TATTAT TATTAT TATTAT TATTAT TTTAT TA 1 TA-TAT TA-TAT TA-TAT TA-TAT TATAT TA 929761 ATTTTTATTT Statistics Matches: 279, Mismatches: 26, Indels: 108 0.68 0.06 0.26 Matches are distributed among these distances: 3 2 0.01 4 37 0.13 5 128 0.46 6 70 0.25 7 37 0.13 8 5 0.02 ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55 Consensus pattern (5 bp): TATAT Found at i:929540 original size:3 final size:3 Alignment explanation
Indices: 929485--929760 Score: 104 Period size: 3 Copynumber: 90.7 Consensus size: 3 929475 TAGTATTCTA * * 929485 TAT TA- TAT TA- TAA TAT ATAT TAT ATAT TAT ATAT TA- TAG TAT ATAT 1 TAT TAT TAT TAT TAT TAT -TAT TAT -TAT TAT -TAT TAT TAT TAT -TAT * 929531 CTAT TAT TA- TAT ATAT TAT ATAG TAT TAT ATAT TA- TAGT GTA- TAT 1 -TAT TAT TAT TAT -TAT TAT -TAT TAT TAT -TAT TAT TA-T -TAT TAT * * 929576 T-T ATAT TAT ATAG CA- TAT TTAT TAT TAT ATAT TAT ATAGT TAT ATAT 1 TAT -TAT TAT -TAT TAT TAT -TAT TAT TAT -TAT TAT -TA-T TAT -TAT * * 929623 TA- TAT ATAT TAT GTAT TAT TA- TATT TAG TAT TAT ATAT TA- TAT AAT 1 TAT TAT -TAT TAT -TAT TAT TAT TA-T TAT TAT TAT -TAT TAT TAT TAT * * * * 929669 TA- CAT T-T TA- TATT TAT TAT ATAC TAG TAT TA- TAT TA- TAA TAT 1 TAT TAT TAT TAT TA-T TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT * 929711 TAT TA- TGT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T 1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT 929756 TAT TA 1 TAT TA 929761 ATTTTTATTT Statistics Matches: 212, Mismatches: 20, Indels: 82 0.68 0.06 0.26 Matches are distributed among these distances: 2 34 0.16 3 121 0.57 4 54 0.25 5 3 0.01 ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57 Consensus pattern (3 bp): TAT Found at i:929629 original size:7 final size:7 Alignment explanation
Indices: 929323--929753 Score: 248 Period size: 7 Copynumber: 59.3 Consensus size: 7 929313 ATAATATACA 929323 ATATATT 1 ATATATT * 929330 CTATA-T 1 ATATATT 929336 AT-TATT 1 ATATATT * 929342 TTATATT 1 ATATATT * 929349 GTATATT 1 ATATATT 929356 ATAGTATTT 1 ATA-TA-TT * 929365 ATATAGT 1 ATATATT 929372 ATATGA-T 1 ATAT-ATT * 929379 AAATATGAT 1 ATATAT--T * 929388 ATAGTCTT 1 ATA-TATT 929396 ATATATT 1 ATATATT 929403 ATAGTATTAT 1 ATA-TA-T-T 929413 ATATATT 1 ATATATT 929420 ATAGTATTT 1 ATA-TA-TT * 929429 ATATAGT 1 ATATATT 929436 ATATGATAT 1 ATAT-AT-T * 929445 ATATAAT 1 ATATATT * 929452 ATAGTCTT 1 ATA-TATT 929460 ATATATT 1 ATATATT * 929467 ATATAGT 1 ATATATT 929474 ATAGTATT 1 ATA-TATT * 929482 CTATATT 1 ATATATT 929489 ATATTATAAT 1 ATA-TAT--T 929499 ATATATT 1 ATATATT 929506 ATATATT 1 ATATATT 929513 ATATATT 1 ATATATT 929520 ATAGTATAT 1 ATA-TAT-T * 929529 ATCTATT 1 ATATATT 929536 AT-TA-T 1 ATATATT 929541 ATATATT 1 ATATATT * 929548 ATATAGT 1 ATATATT 929555 AT-TATAT 1 ATATAT-T * 929562 ATTATAGT 1 A-TATATT * 929570 GTATATT 1 ATATATT 929577 -TATATT 1 ATATATT ** 929583 ATATAGC 1 ATATATT 929590 ATAT-TT 1 ATATATT 929596 AT-TATT 1 ATATATT 929602 ATATATT 1 ATATATT 929609 ATATAGTT 1 ATATA-TT 929617 ATATATTAT 1 ATATA-T-T 929626 ATATATT 1 ATATATT * 929633 ATGTATT 1 ATATATT 929640 ATTATATT 1 A-TATATT 929648 -TAGTATT 1 ATA-TATT 929655 ATATATT 1 ATATATT 929662 ATATAATT 1 ATAT-ATT * * 929670 ACATTTT 1 ATATATT 929677 ATAT-TT 1 ATATATT 929683 AT-TA-T 1 ATATATT * 929688 ATACTAGT 1 ATA-TATT 929696 ATTATATT 1 A-TATATT 929704 ATAATATT 1 AT-ATATT * 929712 ATTATGTT 1 A-TATATT 929720 ATATTATT 1 ATA-TATT 929728 AT-TATT 1 ATATATT 929734 AT-TATT 1 ATATATT 929740 AT-TATT 1 ATATATT 929746 AT-TATT 1 ATATATT 929752 AT 1 AT 929754 TTTATTAATT Statistics Matches: 340, Mismatches: 39, Indels: 91 0.72 0.08 0.19 Matches are distributed among these distances: 5 10 0.03 6 53 0.16 7 146 0.43 8 83 0.24 9 38 0.11 10 10 0.03 ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54 Consensus pattern (7 bp): ATATATT Found at i:929700 original size:22 final size:21 Alignment explanation
Indices: 929323--929753 Score: 229 Period size: 22 Copynumber: 19.9 Consensus size: 21 929313 ATAATATACA * 929323 ATATATTCTATA-TATTAT-T 1 ATATATTATATATTATTATAT * * * 929342 TTATATTGTATATTATAGTATTT 1 ATATATTATATATTAT--TATAT * * * 929365 ATATAGTATATGATAAATATGAT 1 ATATATTATAT-ATTATTAT-AT * 929388 ATAGTCTTATATATTATAGTATTAT 1 ATA-TATTATATATTAT--TA-TAT 929413 ATATATTATAGTA-T-TTATAT 1 ATATATTATA-TATTATTATAT * 929433 AGTATATGATATA-TA-TA-AT 1 A-TATATTATATATTATTATAT * 929452 ATAGTCTTATATATTA-TATAGT 1 ATA-TATTATATATTATTATA-T * 929474 ATAGTATTCTATATTATATTATAAT 1 ATA-TATTATATA-T-TATTAT-AT 929499 ATATATTATATATTA-TATAT 1 ATATATTATATATTATTATAT * 929519 -TATAGTATATATCTATTATTAT 1 ATATATTATATAT-TATTA-TAT * 929541 ATATATTATATAGTATTATAT 1 ATATATTATATATTATTATAT 929562 ATTATAGTGTATAT-TTA-TAT-T 1 A-TATA-T-TATATATTATTATAT ** 929583 ATATAGCATAT-TTATTAT-T 1 ATATATTATATATTATTATAT 929602 ATATATTATATAGTTATATATTAT 1 ATATATTATATA-TTAT-TA-TAT * 929626 ATATATTATGTATTATTATAT 1 ATATATTATATATTATTATAT * 929647 TTAGTATTATATATTA-TATA- 1 ATA-TATTATATATTATTATAT * * 929667 ATTACATTTTATATTTATTATAT 1 A-TATATTATATA-TTATTATAT 929690 ACTAGTATTATATTATAATATTATTAT 1 A-TA-TATTATA-TAT--TATTA-TAT * 929717 GTTATATTAT-TATTATTAT-T 1 -ATATATTATATATTATTATAT 929737 AT-TATTAT-TATTATTAT 1 ATATATTATATATTATTAT 929754 TTTATTAATT Statistics Matches: 329, Mismatches: 38, Indels: 91 0.72 0.08 0.20 Matches are distributed among these distances: 18 24 0.07 19 45 0.14 20 32 0.10 21 41 0.12 22 59 0.18 23 40 0.12 24 52 0.16 25 18 0.05 26 13 0.04 27 5 0.02 ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54 Consensus pattern (21 bp): ATATATTATATATTATTATAT Found at i:929727 original size:29 final size:27 Alignment explanation
Indices: 929498--929759 Score: 135 Period size: 29 Copynumber: 9.5 Consensus size: 27 929488 TATATTATAA 929498 TATATATTATATATTATATATTA-TAGTAT 1 TATATATTAT-TATT-TATATTATTA-TAT * * 929527 ATATCTATTATTATATATATTATATAGTAT 1 -TATATATTATTATTTATATTAT-TA-TAT * 929557 TATATATTA-TAGTGTATA-T-TTATAT 1 TATATATTATTA-TTTATATTATTATAT ** 929582 TATATAGCA-TATTTATTATTA-TATAT 1 TATATATTATTATTTA-TATTATTATAT * 929608 TATATAGTTA-TATATTATATATATTAT-G 1 TATATA-TTATTAT-TTATAT-TATTATAT 929636 TAT-TATTA-TATTTAGTATTA-TATAT 1 TATATATTATTATTTA-TATTATTATAT * 929661 TATATAATTA-CATTTTATATTTATTATA- 1 TATAT-ATTATTA-TTTATA-TTATTATAT * 929689 TACTAGTATTA-TATTATAATATTATTATGT 1 TA-TA-TATTATTATT-T-ATATTATTATAT 929719 TATATTATTATTA-TTATTATTATTATTAT 1 TATA-TATTATTATTTA-TATTATTA-TAT 929748 TAT-TATT-TTATT 1 TATATATTATTATT 929760 AATTTTTATT Statistics Matches: 190, Mismatches: 16, Indels: 55 0.73 0.06 0.21 Matches are distributed among these distances: 24 6 0.03 25 22 0.12 26 27 0.14 27 23 0.12 28 38 0.20 29 51 0.27 30 23 0.12 ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57 Consensus pattern (27 bp): TATATATTATTATTTATATTATTATAT Found at i:929754 original size:24 final size:25 Alignment explanation
Indices: 929490--929769 Score: 134 Period size: 26 Copynumber: 11.3 Consensus size: 25 929480 TTCTATATTA * 929490 TATTA-TAATATATATTATATATTAT 1 TATTATTATTATATATTAT-TATTAT * 929515 ATATTA-TAGTATATATCTATTATTA- 1 -TATTATTATTATATAT-TATTATTAT 929540 TATATATTA-TATAGTATTATATATTA- 1 TAT-TATTATTATA-TATTAT-TATTAT ** 929566 TAGTGTA-TATT-TATATTATATAGCA- 1 TA-T-TATTATTATATATTAT-TATTAT 929591 TATTTATTATTATATATTA-TA-TAGT 1 TA-TTATTATTATATATTATTATTA-T 929616 TATATATTA-TATATATTATGTATTATT 1 TAT-TATTATTATATATTAT-TATTA-T * * 929643 ATATTTAGTATTATATATTA-TATAAT 1 -TA-TTATTATTATATATTATTATTAT * * 929669 TA-CATT-TTATAT-TTATTATATAC 1 TATTATTATTATATATTATTAT-TAT * * 929692 TAGTATTA-TATTATAATATTATTA- 1 TATTATTATTA-TATATTATTATTAT * 929716 TGTTA-TATTAT-TATTATTATTAT 1 TATTATTATTATATATTATTATTAT 929739 TATTATTATTAT-TATT-TTATTAAT 1 TATTATTATTATATATTATTATT-AT * 929763 TTTTATT 1 TATTATT 929770 TTCAGTTTTC Statistics Matches: 206, Mismatches: 20, Indels: 58 0.73 0.07 0.20 Matches are distributed among these distances: 21 3 0.01 22 19 0.09 23 18 0.09 24 45 0.22 25 40 0.19 26 51 0.25 27 14 0.07 28 6 0.03 29 10 0.05 ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57 Consensus pattern (25 bp): TATTATTATTATATATTATTATTAT Found at i:930844 original size:20 final size:19 Alignment explanation
Indices: 930816--930878 Score: 65 Period size: 20 Copynumber: 3.2 Consensus size: 19 930806 TGGTCCTTTA * 930816 ATTTAAATTTTCTTTTAATT 1 ATTTTAATTTT-TTTTAATT * 930836 ATTTTAATTTATTTTTATTT 1 ATTTTAATTT-TTTTTAATT * 930856 A-TTTAATTTTTATTTTATT 1 ATTTTAATTTTT-TTTAATT 930875 ATTT 1 ATTT 930879 CACATTAATT Statistics Matches: 36, Mismatches: 4, Indels: 6 0.78 0.09 0.13 Matches are distributed among these distances: 18 2 0.06 19 14 0.39 20 19 0.53 21 1 0.03 ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71 Consensus pattern (19 bp): ATTTTAATTTTTTTTAATT Found at i:930849 original size:10 final size:10 Alignment explanation
Indices: 930828--930864 Score: 51 Period size: 9 Copynumber: 3.9 Consensus size: 10 930818 TTAAATTTTC 930828 TTTTAA-TTA 1 TTTTAATTTA 930837 TTTTAATTTA 1 TTTTAATTTA * 930847 TTTTTATTTA 1 TTTTAATTTA 930857 -TTTAATTT 1 TTTTAATTT 930865 TTATTTTATT Statistics Matches: 25, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 9 13 0.52 10 12 0.48 ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73 Consensus pattern (10 bp): TTTTAATTTA Found at i:930860 original size:19 final size:19 Alignment explanation
Indices: 930828--930878 Score: 59 Period size: 19 Copynumber: 2.6 Consensus size: 19 930818 TTAAATTTTC 930828 TTTTAATTATTTTAATTTAT- 1 TTTT-ATTA-TTTAATTTATA * 930848 TTTTATTTATTTAATTTTTA 1 TTTTA-TTATTTAATTTATA 930868 TTTTATTATTT 1 TTTTATTATTT 930879 CACATTAATT Statistics Matches: 28, Mismatches: 1, Indels: 5 0.82 0.03 0.15 Matches are distributed among these distances: 19 16 0.57 20 12 0.43 ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75 Consensus pattern (19 bp): TTTTATTATTTAATTTATA Found at i:930864 original size:15 final size:15 Alignment explanation
Indices: 930829--930870 Score: 52 Period size: 15 Copynumber: 2.9 Consensus size: 15 930819 TAAATTTTCT * * 930829 TTTAATTATT-TTAA 1 TTTAATTTTTATTTA 930843 TTT-ATTTTTATTTA 1 TTTAATTTTTATTTA 930857 TTTAATTTTTATTT 1 TTTAATTTTTATTT 930871 TATTATTTCA Statistics Matches: 24, Mismatches: 2, Indels: 3 0.83 0.07 0.10 Matches are distributed among these distances: 13 5 0.21 14 9 0.38 15 10 0.42 ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74 Consensus pattern (15 bp): TTTAATTTTTATTTA Done.