Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008960.1 Hibiscus syriacus cultivar Beakdansim tig00112294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 362692
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 3
Found at i:4591 original size:21 final size:21
Alignment explanation
Indices: 4549--4592 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
4539 ACCCCGGGAG
*
4549 CTAGTTCTTCACGAGCTGCTC
1 CTAGTTCTTCACGAGCTCCTC
*
4570 CTAGTTCTT-ATCGTGCTCCTC
1 CTAGTTCTTCA-CGAGCTCCTC
4591 CT
1 CT
4593 CCTCCTCCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.11, C:0.34, G:0.16, T:0.39
Consensus pattern (21 bp):
CTAGTTCTTCACGAGCTCCTC
Found at i:5647 original size:19 final size:19
Alignment explanation
Indices: 5623--5659 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
5613 GAATGCATTC
5623 CATGCACCGATGCACTCTA
1 CATGCACCGATGCACTCTA
*
5642 CATGCATCGATGCACTCT
1 CATGCACCGATGCACTCT
5660 GAATATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.24
Consensus pattern (19 bp):
CATGCACCGATGCACTCTA
Found at i:5782 original size:64 final size:64
Alignment explanation
Indices: 5607--5787 Score: 211
Period size: 65 Copynumber: 2.8 Consensus size: 64
5597 GAATTAATTG
* * * *
5607 AACATCGAATGCATTCCATGCACCGATGCACTCTACATGCATCGATGCACTCTGAATATTTTCAA
1 AACATCGAATGCATTTCATGCATCGATGCACACTACATGCATCGATGCA-TCAGAATATTTTCAA
* *** **
5672 AACATCGAATGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCATCAGGCTATTTTTCAA
1 AACATCGAATGCATTTCATGCATCGATGCACACTACATGCATCGATGCATCAGAATA-TTTTCAA
*** *
5737 AA-ATCGAATGCATTTCATGCATCGATGCACACTTGGTGCACCGATGCATCA
1 AACATCGAATGCATTTCATGCATCGATGCACACTACATGCATCGATGCATCA
5788 AGTGTTCCAA
Statistics
Matches: 98, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
64 47 0.48
65 51 0.52
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (64 bp):
AACATCGAATGCATTTCATGCATCGATGCACACTACATGCATCGATGCATCAGAATATTTTCAA
Found at i:12794 original size:16 final size:17
Alignment explanation
Indices: 12748--12786 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
12738 TGGCGACTCC
12748 CAAAA-CATTTTTTAAAAT
1 CAAAATCATTTTTT--AAT
12766 CAAAATCATTTTTTAAT
1 CAAAATCATTTTTTAAT
12783 CAAA
1 CAAA
12787 TTATTTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 5 0.25
19 8 0.40
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (17 bp):
CAAAATCATTTTTTAAT
Found at i:19079 original size:3 final size:3
Alignment explanation
Indices: 19071--19151 Score: 117
Period size: 3 Copynumber: 27.0 Consensus size: 3
19061 TTAATATATT
* * *
19071 TAA TAA TAA TAA TAA TAA CAA TGA TAA TAA TAA TAA TAA TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
19119 TGA TAA TAA TAA TAA TAA TAA AAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
19152 ATCAATATGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:19678 original size:113 final size:113
Alignment explanation
Indices: 19399--19884 Score: 679
Period size: 113 Copynumber: 4.3 Consensus size: 113
19389 TTGAACAAGC
* *
19399 TGAACTTTCCACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAACAAAAGGTTGAACAAATTC
1 TGAACTTT-CTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAACAAAAGGTTGAACAAATTC
* *
19464 TTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGACGAGTTCTTCTTATTA
65 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTA
* * * * * * * ** * *
19516 GGAACTCTATCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAGTTCT
1 TGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAACAAAAGGTTGAACAAATTCT
*
19581 TCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATTA
66 TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
*
19629 TGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCT
1 TGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAACAAAAGGTTGAACAAATTCT
19694 TCTCATTATGAACTT-TCTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
66 TCTCATTATGAACTTCT-TCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* * * * * *
19742 TGAACTTTCTCTGGAAAAGATGATCCATCAAGTGAT-GAATTCAGGCAAAAGGTTGAACAAGTTC
1 TGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA-ACAAAAGGTTGAACAAATTC
*
19806 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTA
65 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
*
19855 TGAACTTTCTCTGGAAAAACTGATCCATCA
1 TGAACTTTCTCTGGAAAAGCTGATCCATCA
19885 TTATGGATTC
Statistics
Matches: 329, Mismatches: 37, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
112 6 0.02
113 239 0.73
114 1 0.00
116 77 0.23
117 6 0.02
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (113 bp):
TGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAACAAAAGGTTGAACAAATTCT
TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
Found at i:19847 original size:226 final size:227
Alignment explanation
Indices: 19399--19884 Score: 760
Period size: 226 Copynumber: 2.1 Consensus size: 227
19389 TTGAACAAGC
* *
19399 TGAACTTTCCACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAACAAAAGGTTGAACAAATTC
1 TGAACTTT-CTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAACAAAAGGTTGAACAAATTC
* *
19464 TTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGACGAGTTCTTCTTATTAGGAACTCTATCTG
65 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT-A-GAGTTCTTCTCATTAGGAACTCTATCTG
* * *
19529 GCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAAC
128 GAAAAGATGATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAAC
19594 TTCTTCTTCATTCTTCAGATGAGTTCTTCTCATTA
193 TTCTTCTTCATTCTTCAGATGAGTTCTTCTCATTA
*
19629 TGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCT
1 TGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAACAAAAGGTTGAACAAATTCT
* * *
19694 TCTCATTATGAACTT-TCTCTTCCTTCTTCAGAT-GAGTTCTTCTCATTATGAACTTTCTCTGGA
66 TCTCATTATGAACTTCT-TCTTCCTTCTTCAGATAGAGTTCTTCTCATTAGGAACTCTATCTGGA
* ** *
19757 AAAGATGATCCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTT
130 AAAGATGATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
* *
19822 CTTCTTCCTTCTTCAGATGAGTTCTTCTTATTA
195 CTTCTTCATTCTTCAGATGAGTTCTTCTCATTA
*
19855 TGAACTTTCTCTGGAAAAACTGATCCATCA
1 TGAACTTTCTCTGGAAAAGCTGATCCATCA
19885 TTATGGATTC
Statistics
Matches: 237, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
226 144 0.61
228 1 0.00
229 84 0.35
230 8 0.03
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (227 bp):
TGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAACAAAAGGTTGAACAAATTCT
TCTCATTATGAACTTCTTCTTCCTTCTTCAGATAGAGTTCTTCTCATTAGGAACTCTATCTGGAA
AAGATGATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTC
TTCTTCATTCTTCAGATGAGTTCTTCTCATTA
Found at i:20760 original size:83 final size:85
Alignment explanation
Indices: 20621--21026 Score: 652
Period size: 83 Copynumber: 4.9 Consensus size: 85
20611 CTGTAGTTCC
*
20621 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATGAGCACATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
20686 AAATTCAATGATTGGTT-T-
66 AAATTCAATGATTGGTTCTG
*
20704 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAAATGCTATGAGCACATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
20769 AAATTCAATGATTGGTTCTG
66 AAATTCAATGATTGGTTCTG
* *
20789 T-CC-AACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATTTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
20852 AAATTCAATGATTGGTT-T-
66 AAATTCAATGATTGGTTCTG
* * *
20870 TACCAAACCAGATTAGATAACTCAAAGAACACTTCCAGAAGATGCTATG-GTAAATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
20934 AAATTCAATGATTGGTTCTG
66 AAATTCAATGATTGGTTCTG
* * *
20954 T-CC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATG-GTAAATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
21016 AAATTCAATGA
66 AAATTCAATGA
21027 CCAGATCAGA
Statistics
Matches: 305, Mismatches: 12, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
81 1 0.00
82 100 0.33
83 199 0.65
84 4 0.01
85 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.28
Consensus pattern (85 bp):
TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
AAATTCAATGATTGGTTCTG
Found at i:20964 original size:82 final size:83
Alignment explanation
Indices: 20621--21248 Score: 648
Period size: 83 Copynumber: 7.8 Consensus size: 83
20611 CTGTAGTTCC
*
20621 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATGAGCACATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
20686 AAATTCAATGATTGGTTT
66 AAATTCAATGATTGGTTT
*
20704 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAAATGCTATGAGCACATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
20769 AAATTCAATGATTGGTTCT
66 AAATTCAATGATTGGTT-T
* *
20788 GT-CC-AACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATTTTC
1 -TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTC
20851 TAAATTCAATGATTGGTTT
65 TAAATTCAATGATTGGTTT
* * *
20870 TACCAAACCAGATTAGATAACTCAAAGAACACTTCCAGAAGATGCTATG-GTAAATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
20934 AAATTCAATGATTGGTTCT
66 AAATTCAATGATTGGTT-T
* * *
20953 GT-CC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATG-GTAAATTCATCTTC
1 -TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTC
*** *
21015 TAAATTCAATGACCAG-AT
65 TAAATTCAATGATTGGTTT
* * * * * * *
21033 CA-GATAACTCA-A--AGA-ACACTTC-CAGAAGA-TGCTATG-AGCA--C-AT--TCATC-TTC
1 TACCA-AAC-CAGATCAGATA-AC-TCAAAGAACACTTCCA-GAAG-ATGCTATGAGCA-CATTC
** * * * * **
21084 TAAATTC--AA-TGATTGGTTCTGTCC
59 -ATCTTCTAAATTCAATGATT-GGTTT
* *
21108 AACCAGACCAG---A--TAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
21168 AAATTCAATGATTGGTTT
66 AAATTCAATGATTGGTTT
*
21186 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAAATGCTATGAGCACATTCATCTT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTT
21249 GTTCCAGTTA
Statistics
Matches: 452, Mismatches: 55, Indels: 76
0.78 0.09 0.13
Matches are distributed among these distances:
71 2 0.00
72 9 0.02
73 10 0.02
74 7 0.02
75 9 0.02
76 12 0.03
77 5 0.01
78 19 0.04
79 18 0.04
80 3 0.01
81 6 0.01
82 103 0.23
83 244 0.54
84 4 0.01
85 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (83 bp):
TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
AAATTCAATGATTGGTTT
Found at i:21043 original size:68 final size:69
Alignment explanation
Indices: 20958--21095 Score: 242
Period size: 68 Copynumber: 2.0 Consensus size: 69
20948 GTTCTGTCCA
* *
20958 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATG-GTAAATTCATCTTCTAAATTC
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCTAAATTC
21022 AATG
66 AATG
*
21026 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATTC
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCTAAATTC
21091 AATG
66 AATG
21095 A
1 A
21096 TTGGTTCTGT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
68 42 0.64
69 24 0.36
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (69 bp):
ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCTAAATTC
AATG
Found at i:21125 original size:151 final size:157
Alignment explanation
Indices: 20626--21248 Score: 828
Period size: 166 Copynumber: 3.8 Consensus size: 157
20616 GTTCCTACCA
* * *
20626 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATGAGCACATTCATCTTCTAAATT
1 AACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCTAAATT
*
20691 CAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAAATGCTATGAGC
66 CAA-GATTGG---T-----ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
20756 ACATTCATCTTCTAAATTCAATGATTGGTTCTGTCC
122 ACATTCATCTTCTAAATTCAATGATTGGTTCTGTCC
* *
20792 AACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATTTTCTAAATT
1 AACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCTAAATT
* *
20857 CAATGATTGGTTTTACCAAACCAGATTAGATAACTCAAAGAACACTTCCAGAAGATGCTATG-GT
66 CAA-GATTGG---T-----ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
*
20921 AAATTCATCTTCTAAATTCAATGATTGGTTCTGTCC
122 ACATTCATCTTCTAAATTCAATGATTGGTTCTGTCC
* * *
20957 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATG-GTAAATTCATCTTCTAAATT
1 AACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCTAAATT
21021 C-A-A-T-G-ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC
66 CAAGATTGGTACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC
21081 TTCTAAATTCAATGATTGGTTCTGTCC
131 TTCTAAATTCAATGATTGGTTCTGTCC
*
21108 AACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
1 AACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCTAAATT
*
21173 CAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAAATGCTATGAGC
66 CAA-GATTGG---T-----ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
21238 ACATTCATCTT
122 ACATTCATCTT
21249 GTTCCAGTTA
Statistics
Matches: 421, Mismatches: 20, Indels: 32
0.89 0.04 0.07
Matches are distributed among these distances:
150 42 0.10
151 78 0.19
152 19 0.05
153 1 0.00
155 1 0.00
156 1 0.00
157 1 0.00
159 1 0.00
160 1 0.00
161 1 0.00
163 1 0.00
164 18 0.04
165 78 0.19
166 178 0.42
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (157 bp):
AACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCTAAATT
CAAGATTGGTACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC
TTCTAAATTCAATGATTGGTTCTGTCC
Found at i:22403 original size:9 final size:8
Alignment explanation
Indices: 22389--22479 Score: 96
Period size: 9 Copynumber: 10.8 Consensus size: 8
22379 CTTGACCCCC
22389 CTTTTTCTT
1 CTTTTT-TT
22398 CTTTTTTCT
1 CTTTTTT-T
22407 CTTTTTTT
1 CTTTTTTT
22415 CTTTTTTTT
1 C-TTTTTTT
22424 CTTTCTTTTT
1 C-TT-TTTTT
22434 CTTTTTTT
1 CTTTTTTT
22442 CTTTTCTTT
1 CTTTT-TTT
22451 C--TTTTT
1 CTTTTTTT
*
22457 CTTTTCTCT
1 CTTTT-TTT
22466 CTTTTTTT
1 CTTTTTTT
22474 CTTTTT
1 CTTTTT
22480 CTTCAAGCAT
Statistics
Matches: 73, Mismatches: 2, Indels: 15
0.81 0.02 0.17
Matches are distributed among these distances:
6 4 0.05
7 2 0.03
8 23 0.32
9 38 0.52
10 6 0.08
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (8 bp):
CTTTTTTT
Found at i:22446 original size:23 final size:22
Alignment explanation
Indices: 22389--22482 Score: 111
Period size: 23 Copynumber: 4.1 Consensus size: 22
22379 CTTGACCCCC
22389 CTTTTTCTTCTTTTTTCTCTTTTT
1 CTTTTT-TTCTTTTTT-TCTTTTT
*
22413 -TTCTTTTT-TTTCTTTCTTTTT
1 CTT-TTTTTCTTTTTTTCTTTTT
22434 CTTTTTTTCTTTTCTTTCTTTTT
1 CTTTTTTTCTTTT-TTTCTTTTT
*
22457 CTTTTCTCTCTTTTTTTCTTTTT
1 CTTTT-TTTCTTTTTTTCTTTTT
22480 CTT
1 CTT
22483 CAAGCATAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
21 12 0.19
22 10 0.16
23 30 0.48
24 10 0.16
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (22 bp):
CTTTTTTTCTTTTTTTCTTTTT
Found at i:33644 original size:22 final size:20
Alignment explanation
Indices: 33608--33648 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
33598 TTTATAATCC
33608 TATTTTTTTTTAAAAATATA
1 TATTTTTTTTTAAAAATATA
33628 TATTTATTTATTTAAAAATAT
1 TATTT-TTT-TTTAAAAATAT
33649 CAGAAAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 3 0.16
22 11 0.58
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TATTTTTTTTTAAAAATATA
Found at i:35183 original size:3 final size:3
Alignment explanation
Indices: 35175--35255 Score: 126
Period size: 3 Copynumber: 27.0 Consensus size: 3
35165 TTAATATATT
* * *
35175 TAA TAA TAA TAA TAA TAA CAA TGA TAA TAA TAA TAA TAA TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
35223 TAA TAA TAA TAA TAA TAA TAA AAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
35256 ATCAATATAG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:39103 original size:34 final size:36
Alignment explanation
Indices: 39049--39119 Score: 128
Period size: 34 Copynumber: 2.0 Consensus size: 36
39039 AATTTTAGTA
39049 TCTCATTTACTATATGCGATCACTATATTTGTTGTT
1 TCTCATTTACTATATGCGATCACTATATTTGTTGTT
39085 TCTCATTTA-T-TATGCGATCACTATATTTGTTGTT
1 TCTCATTTACTATATGCGATCACTATATTTGTTGTT
39119 T
1 T
39120 ATCTTCTAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
34 25 0.71
35 1 0.03
36 9 0.26
ACGTcount: A:0.21, C:0.15, G:0.11, T:0.52
Consensus pattern (36 bp):
TCTCATTTACTATATGCGATCACTATATTTGTTGTT
Found at i:45583 original size:26 final size:26
Alignment explanation
Indices: 45554--45605 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
45544 AATGACGCTC
* *
45554 AATGCGCATCATAAATGTGTGTCATA
1 AATGCGCATCATAAATGCGCGTCATA
**
45580 AATGCGTGTCATAAATGCGCGTCATA
1 AATGCGCATCATAAATGCGCGTCATA
45606 GATTTATGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (26 bp):
AATGCGCATCATAAATGCGCGTCATA
Found at i:45601 original size:15 final size:13
Alignment explanation
Indices: 45562--45605 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
45552 TCAATGCGCA
*
45562 TCATAAATGTGTG
1 TCATAAATGCGTG
45575 TCATAAATGCGTG
1 TCATAAATGCGTG
*
45588 TCATAAATGCGCG
1 TCATAAATGCGTG
45601 TCATA
1 TCATA
45606 GATTTATGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATAAATGCGTG
Found at i:50346 original size:30 final size:32
Alignment explanation
Indices: 50310--50372 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
50300 TTATTTCATC
*
50310 ACTAAAT-ATTTT-TTATAACTTTTTACTGTG
1 ACTAAATAATTTTGTTACAACTTTTTACTGTG
* *
50340 ACTAAATAATTTTGTTACAATTTTTTATTGTG
1 ACTAAATAATTTTGTTACAACTTTTTACTGTG
50372 A
1 A
50373 AAGAATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 7 0.25
31 5 0.18
32 16 0.57
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (32 bp):
ACTAAATAATTTTGTTACAACTTTTTACTGTG
Found at i:50418 original size:33 final size:32
Alignment explanation
Indices: 50342--50474 Score: 126
Period size: 33 Copynumber: 4.1 Consensus size: 32
50332 TTACTGTGAC
* *
50342 TAAATAAT-TTTGTTACAATTTTTTATTGTGA
1 TAAATAATATTTGTCACAATTTTTTATTATGA
* * *
50373 AAGAATATTATTTGTCACAATTTTTTATAATGA
1 TA-AATAATATTTGTCACAATTTTTTATTATGA
* * * *
50406 TAAATTAATATTTGTTATAATTTGTTATTTTGA
1 TAAA-TAATATTTGTCACAATTTTTTATTATGA
* *
50439 TTAAATAA-ATTTGTCACAATTTTTCATTTTGA
1 -TAAATAATATTTGTCACAATTTTTTATTATGA
50471 TAAA
1 TAAA
50475 ATATTGGGAC
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
31 5 0.06
32 27 0.33
33 46 0.56
34 4 0.05
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (32 bp):
TAAATAATATTTGTCACAATTTTTTATTATGA
Found at i:50434 original size:66 final size:63
Alignment explanation
Indices: 50342--50462 Score: 154
Period size: 66 Copynumber: 1.9 Consensus size: 63
50332 TTACTGTGAC
* *
50342 TAAATAATTTTGTTACAATTTTTTATTGTGA-AAGAATATTATTTGTCACAATTTTTTATAATGA
1 TAAATAATTTTGTTACAATTTGTTATTGTGATAA-AATA-AATTTGTCACAATTTTTTATAATGA
* * *
50406 TAAATTAATATTTGTTATAATTTGTTATTTTGATTAAATAAATTTGTCACAATTTTT
1 TAAA-TAAT-TTTGTTACAATTTGTTATTGTGATAAAATAAATTTGTCACAATTTTT
50463 CATTTTGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
64 4 0.08
65 20 0.41
66 24 0.49
67 1 0.02
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (63 bp):
TAAATAATTTTGTTACAATTTGTTATTGTGATAAAATAAATTTGTCACAATTTTTTATAATGA
Found at i:50999 original size:22 final size:23
Alignment explanation
Indices: 50974--51025 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
50964 ATTTTATTTA
*
50974 AATTTTTTATTATAACT-AAAAT
1 AATTTTTTATGATAACTAAAAAT
**
50996 AATTGGTTATGATAACTAAAAAT
1 AATTTTTTATGATAACTAAAAAT
51019 ATATTTT
1 A-ATTTT
51026 AAAACCTTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
22 14 0.61
23 6 0.26
24 3 0.13
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (23 bp):
AATTTTTTATGATAACTAAAAAT
Found at i:55847 original size:25 final size:25
Alignment explanation
Indices: 55819--55890 Score: 60
Period size: 25 Copynumber: 3.0 Consensus size: 25
55809 ATTATTTTAA
55819 AAATTTTATTTAATAATAAATATTG
1 AAATTTTATTTAATAATAAATATTG
* * * * *
55844 AAATCTTAGTCTGAT-ATATAT-TTT
1 AAATTTTA-TTTAATAATAAATATTG
*
55868 AAA-TTGATTTAATAATAAATATT
1 AAATTTTATTTAATAATAAATATT
55891 TATGGAACTC
Statistics
Matches: 34, Mismatches: 10, Indels: 7
0.67 0.20 0.14
Matches are distributed among these distances:
22 4 0.12
23 7 0.21
24 7 0.21
25 12 0.35
26 4 0.12
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (25 bp):
AAATTTTATTTAATAATAAATATTG
Found at i:55971 original size:24 final size:23
Alignment explanation
Indices: 55929--55973 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
55919 GTCCAACTTG
*
55929 TAACAAAATTTAAAAATTAAATA
1 TAACAAAAATTAAAAATTAAATA
*
55952 TAACAATAAATTAAATATTAAA
1 TAACAA-AAATTAAAAATTAAA
55974 CAAAATCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (23 bp):
TAACAAAAATTAAAAATTAAATA
Found at i:56973 original size:22 final size:22
Alignment explanation
Indices: 56942--56984 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
56932 ATTTAGTTTC
* *
56942 TTTTTAGTATTTTTTATATTTA
1 TTTTTAGTATATTTTAAATTTA
*
56964 TTTTTTGTATATTTTAAATTT
1 TTTTTAGTATATTTTAAATTT
56985 TAAATCTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (22 bp):
TTTTTAGTATATTTTAAATTTA
Found at i:57646 original size:21 final size:21
Alignment explanation
Indices: 57621--57664 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
57611 TTTAACTGCA
57621 TTTTCACTTTACGTTCAGTAT
1 TTTTCACTTTACGTTCAGTAT
57642 TTTTCACTTTACGTTCAGTAT
1 TTTTCACTTTACGTTCAGTAT
57663 TT
1 TT
57665 GGGTCTTCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.09, T:0.55
Consensus pattern (21 bp):
TTTTCACTTTACGTTCAGTAT
Found at i:59901 original size:2 final size:2
Alignment explanation
Indices: 59864--59891 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
59854 GAATTACTAA
59864 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59892 TGAATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62152 original size:418 final size:412
Alignment explanation
Indices: 61350--62190 Score: 1090
Period size: 418 Copynumber: 2.0 Consensus size: 412
61340 TATAAAATTT
* *
61350 TTACTATATAACATTTTTGGAACCAAAAAATACGGAGAAATGTCTACGATATTATAATTTTACAT
1 TTACTATATAACATTTTTGGAACCAAAAAATACGGAGAAATGTCTACGATAGTATAAATTTA-AT
* *
61415 AATGATTAAAATATATAACTACAAAAATAATTGATTACAAAAAACTTGAATTTTATTGTTTGATG
65 AATGATTAAAATATATAACTACAAAAATAATTGATTACAAAAAACCTGAATTTTATTATTTGATG
* * *
61480 TGATATTTTTTTATAAAAATAACTATAAATTATAATTACAAAACGTTTGAATATAAATTTTTGAA
130 TGATATTTTTTTATAAAAATAACTATAAATTATAATTACAAAACATTTCAATATAAACTTTTG--
* * *
61545 AAAAAAAAAAAGTGGACAAAAATATTTATCACAATATATTATCACTATAATTATAATTTATAACT
193 AAAAAAAAAAAGTGAACAAAAATAGTTATCACAATATATTATCACTATAATTAAAATTTATAACT
* * * *
61610 GCAAGTATAATTTGTCACAAAAATGTGAACACAATTATTTTTTGTGACAAATTTTTTTGTAATAA
258 ACAAATATAATTTATCACAAAAACGTGAACACAATTATTTTTTGTGACAAATTTTTTTGTAATAA
* * *
61675 TTATAAACACTTATAGTTACAAAAATTGTTACTATATGATTTTTTGGCGCAATAAAATATAGAGG
323 TTATAAACACTTATAGTTACAAAAATTGTCACTATATGATTTTTTGGCGCAAAAAAATATAGAAG
*
61740 AAAATCTTTATGATAATATATTTTG
388 AAAATCTTTATGATAATATACTTTG
* * * * *
61765 TTACTATATAATATTTTT-G-ACACTAAAAATAGGGATAAATGGT-TATGATAGTATAAATTT-A
1 TTACTATATAACATTTTTGGAAC-CAAAAAATACGGAGAAAT-GTCTACGATAGTATAAATTTAA
*
61826 TAATGATTAAAATATATAATTTA-AAAAATAATTGATTACAAAAAACCTGAATTTTATTATTTGA
64 TAATGATTAAAATATATAA-CTACAAAAATAATTGATTACAAAAAACCTGAATTTTATTATTTGA
* * *
61890 TTTGATAATTTTTTCTATAACAATAACTATAAATTATAATTATAAAA-ATTGTCAATAT-AACTT
128 TGTGAT-ATTTTTT-TATAAAAATAACTATAAATTATAATTACAAAACATT-TCAATATAAACTT
* * * *
61953 TTG-AAACAAAAAAGTGAAGAAAAATAGTTATGACAATTAATATATGCTATCACTATAGTTAAAA
190 TTGAAAAAAAAAAAGTGAACAAAAATAGTTAT--C-A-CAATATAT--TATCACTATAATTAAAA
* *
62017 TTTATAACTACAAATATAATTTATCACAAAAAACGTGAATATAATTTATTTTTTGTGAC-AATGT
249 TTTATAACTACAAATATAATTTATCAC-AAAAACGTGAACACAA-TTATTTTTTGTGACAAAT-T
* * *
62081 TTTTTGTAATAATTATTAACACTTATAGTTACAAAATTTGTCATTATATGACTTTTTT-GCGCAA
311 TTTTTGTAATAATTATAAACACTTATAGTTACAAAAATTGTCACTATATGA-TTTTTTGGCGCAA
* *
62145 AAAAATATGGAAGAAAATCTTTGTGATAATATACTTTG
375 AAAAATATAGAAGAAAATCTTTATGATAATATACTTTG
*
62183 TCACTATA
1 TTACTATA
62191 ATTAAAACAT
Statistics
Matches: 371, Mismatches: 39, Indels: 29
0.85 0.09 0.07
Matches are distributed among these distances:
410 24 0.06
412 65 0.18
413 21 0.06
414 73 0.20
415 19 0.05
416 39 0.11
417 16 0.04
418 108 0.29
419 6 0.02
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.39
Consensus pattern (412 bp):
TTACTATATAACATTTTTGGAACCAAAAAATACGGAGAAATGTCTACGATAGTATAAATTTAATA
ATGATTAAAATATATAACTACAAAAATAATTGATTACAAAAAACCTGAATTTTATTATTTGATGT
GATATTTTTTTATAAAAATAACTATAAATTATAATTACAAAACATTTCAATATAAACTTTTGAAA
AAAAAAAAGTGAACAAAAATAGTTATCACAATATATTATCACTATAATTAAAATTTATAACTACA
AATATAATTTATCACAAAAACGTGAACACAATTATTTTTTGTGACAAATTTTTTTGTAATAATTA
TAAACACTTATAGTTACAAAAATTGTCACTATATGATTTTTTGGCGCAAAAAAATATAGAAGAAA
ATCTTTATGATAATATACTTTG
Found at i:62365 original size:180 final size:181
Alignment explanation
Indices: 62002--62384 Score: 420
Period size: 180 Copynumber: 2.1 Consensus size: 181
61992 ATATATGCTA
* * *
62002 TCACTATAGTTAAAATTTATAACTACAAATATAATTTATCACAAAAAACGTGAATATAATTTATT
1 TCACTATAATTAAAATATATAACGACAAATATAATTTATCACAAAAAACGTGAATATAATTTATT
* * ** * *
62067 TTTTGTGACAATGTTTTTTGTAATAATTATTAACACTTATAGTTACAAAATTTGTCATTATATGA
66 TTTTGTGACAATGTTTTTTGTAACAATAATTAACACTTATAGTTACAAAACATGTCACTATATAA
* *
62132 CTTTTTTGCGCAAAAAAATATGGAAGAAAATCTTTGTGATAATATACTTTG
131 CTTTTTTGCACAAAAAAATATGGAAGAAAATCTTTGTGATAATACACTTTG
* * * * * * * *
62183 TCACTATAATTAAAACATATAACGACAAATATATTTTTTTACTAAAAACTTGAATCTCA-TTATT
1 TCACTATAATTAAAATATATAACGACAAATATAATTTATCACAAAAAACGTGAATATAATTTATT
*
62247 TTTTGTGACAAAT-TTTTTTGTAACAATAATTATA-GCTTATAGTTACAAAACATGTCACTATAT
66 TTTTGTGAC-AATGTTTTTTGTAACAATAATTA-ACACTTATAGTTACAAAACATGTCACTATAT
* ** * * * *
62310 AATTTTGTTTTTTAC-CAAAAAT-TGG-AGATAATCATTTGTGGCT-ATACATTTTG
129 AA-CTT-TTTTGCACAAAAAAATATGGAAGAAAATC-TTTGT-GATAATACACTTTG
62363 TCACTATAATTAAAATATATAA
1 TCACTATAATTAAAATATATAA
62385 TTACAAAAAA
Statistics
Matches: 168, Mismatches: 28, Indels: 13
0.80 0.13 0.06
Matches are distributed among these distances:
179 7 0.04
180 94 0.56
181 62 0.37
182 5 0.03
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.41
Consensus pattern (181 bp):
TCACTATAATTAAAATATATAACGACAAATATAATTTATCACAAAAAACGTGAATATAATTTATT
TTTTGTGACAATGTTTTTTGTAACAATAATTAACACTTATAGTTACAAAACATGTCACTATATAA
CTTTTTTGCACAAAAAAATATGGAAGAAAATCTTTGTGATAATACACTTTG
Found at i:64512 original size:29 final size:30
Alignment explanation
Indices: 64460--64517 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
64450 TAAATTTGGT
* * * *
64460 TAAAAGTTTATTTTGGTCCTTGAATTTAAC
1 TAAAAGTTTAATTTAGTCATTGAAATTAAC
64490 TAAAA-TTTAATTTAGTCATTGAAATTAA
1 TAAAAGTTTAATTTAGTCATTGAAATTAA
64518 AGTTAATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (30 bp):
TAAAAGTTTAATTTAGTCATTGAAATTAAC
Found at i:71515 original size:22 final size:22
Alignment explanation
Indices: 71487--71540 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
71477 TGGAAAATAA
*
71487 TATAATTTTATTTTAACTAATT
1 TATAATTTTATGTTAACTAATT
* * *
71509 TATAATTATATGTTAAGTCATT
1 TATAATTTTATGTTAACTAATT
*
71531 TAGAATTTTA
1 TATAATTTTA
71541 AATTTTTATA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (22 bp):
TATAATTTTATGTTAACTAATT
Found at i:72283 original size:14 final size:13
Alignment explanation
Indices: 72264--72311 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
72254 ATAACTATTT
72264 TTATAAAATTACAA
1 TTATAAAATTA-AA
72278 TTAT-AAA-TAATA
1 TTATAAAATTAA-A
72290 TTATAAAATATAAA
1 TTATAAAAT-TAAA
72304 TTATAAAA
1 TTATAAAA
72312 GGGAAATCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.03
12 7 0.23
13 6 0.20
14 13 0.43
15 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (13 bp):
TTATAAAATTAAA
Found at i:72832 original size:20 final size:20
Alignment explanation
Indices: 72808--72853 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
72798 AACAAAATGC
72808 TAATAAATAAAAAATGAATAA
1 TAATAAATAAAAAAT-AATAA
*
72829 -AATATATAAAAAATAATAA
1 TAATAAATAAAAAATAATAA
72848 TAATAA
1 TAATAA
72854 TGAAAGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (20 bp):
TAATAAATAAAAAATAATAA
Found at i:72849 original size:37 final size:35
Alignment explanation
Indices: 72808--72885 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 35
72798 AACAAAATGC
72808 TAATAAATAA-AAAATGAATA-AAATATATAAAAAATAA
1 TAATAAATAATAAAA-GAA-AGAAATA-ATAAAAAA-AA
*
72845 TAAT-AATAATGAAAGAAAGAAATAATAAAAAAAA
1 TAATAAATAATAAAAGAAAGAAATAATAAAAAAAA
72879 TAATAAA
1 TAATAAA
72886 AGGTTAAGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
34 6 0.16
35 11 0.30
36 13 0.35
37 7 0.19
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (35 bp):
TAATAAATAATAAAAGAAAGAAATAATAAAAAAAA
Found at i:74104 original size:12 final size:12
Alignment explanation
Indices: 74087--74116 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
74077 TGACTGGATT
74087 TGGACCCGTTTC
1 TGGACCCGTTTC
*
74099 TGGACCCGTTTT
1 TGGACCCGTTTC
74111 TGGACC
1 TGGACC
74117 TGGAGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.30, G:0.27, T:0.33
Consensus pattern (12 bp):
TGGACCCGTTTC
Found at i:74157 original size:19 final size:19
Alignment explanation
Indices: 74125--74173 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
74115 CCTGGAGAAA
* * *
74125 AAAATATATGAAATTAAAT
1 AAAATAAATAAAATAAAAT
* *
74144 TAAATTAATAAAATAAAAT
1 AAAATAAATAAAATAAAAT
74163 AAAATAAATAA
1 AAAATAAATAA
74174 TATGATATAA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAATAAATAAAATAAAAT
Found at i:74183 original size:19 final size:18
Alignment explanation
Indices: 74161--74200 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
74151 ATAAAATAAA
74161 ATAAAATAAATAATATGAT
1 ATAAAATAAATAATAT-AT
* *
74180 ATAAACTATATAATATAT
1 ATAAAATAAATAATATAT
74198 ATA
1 ATA
74201 TTTCAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (18 bp):
ATAAAATAAATAATATAT
Found at i:74357 original size:38 final size:36
Alignment explanation
Indices: 74182--74573 Score: 281
Period size: 38 Copynumber: 10.8 Consensus size: 36
74172 AATATGATAT
*
74182 AAACTATATAATATAT-ATATTTCAAAAATATGTTTTAGA
1 AAACTATATAATATATAATTTTTC--AAA-ATGTTTTA-A
* *** * **
74221 AAACTATAT-AT-TAT-ACTTAAAAAAAAGTTTCCA
1 AAACTATATAATATATAATTTTTCAAAATGTTTTAA
* * * *
74254 AAACTATATATTACAT-AGTTTTCAAAACGTTTT-A
1 AAACTATATAATATATAATTTTTCAAAATGTTTTAA
* *
74288 AAA--ATAT--TATATAAGTTTTCAGAAAAATGTTTTTA
1 AAACTATATAATATATAATTTTTC---AAAATGTTTTAA
* ** *
74323 AAACTATATATTATATAATTTCACAAAAAATGTTTTTA
1 AAACTATATAATATATAATTTTTC--AAAATGTTTTAA
*
74361 AAACTATATACTATAT-ATGTTTTCAAAATGTTTTAA
1 AAACTATATAATATATAAT-TTTTCAAAATGTTTTAA
* *
74397 AAACTATATAATATATAAACGTTTTCAAAATGTTTTTA
1 AAACTATATAATATAT-AA-TTTTTCAAAATGTTTTAA
*
74435 AAACTATATACTATAT-ATGTTTTCAAAATGTTTTAA
1 AAACTATATAATATATAAT-TTTTCAAAATGTTTTAA
* *
74471 AAACTATATAATATATAAACGTTTTCAAAATGTTTTCA
1 AAACTATATAATATAT-AA-TTTTTCAAAATGTTTTAA
* * *
74509 AAACTATATATTATAT-A-TTTTAAAAATATTTTCAA
1 AAACTATATAATATATAATTTTTCAAAATGTTTT-AA
*
74544 AAACTATATAATATATAAATTTTTGAAAAT
1 AAACTATATAATATAT-AATTTTTCAAAAT
74574 CATTTTCTGA
Statistics
Matches: 289, Mismatches: 41, Indels: 47
0.77 0.11 0.12
Matches are distributed among these distances:
30 4 0.01
31 7 0.02
32 4 0.01
33 10 0.03
34 32 0.11
35 36 0.12
36 59 0.20
37 12 0.04
38 106 0.37
39 19 0.07
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.42
Consensus pattern (36 bp):
AAACTATATAATATATAATTTTTCAAAATGTTTTAA
Found at i:74389 original size:36 final size:36
Alignment explanation
Indices: 74253--74560 Score: 292
Period size: 38 Copynumber: 8.5 Consensus size: 36
74243 AAAAGTTTCC
* * *
74253 AAAACTATATATTACATA-GTTTTCAAAACG-TTTT
1 AAAACTATATAATATATATGTTTTCAAAATGTTTTT
*
74287 AAAA--ATAT--TATATAAGTTTTCAGAAAAATGTTTTT
1 AAAACTATATAATATATATGTTTTC---AAAATGTTTTT
* **
74322 AAAACTATATATTATATAAT-TTCACAAAAAATGTTTTT
1 AAAACTATATAATATAT-ATGTTTTC--AAAATGTTTTT
* *
74360 AAAACTATATACTATATATGTTTTCAAAATGTTTTA
1 AAAACTATATAATATATATGTTTTCAAAATGTTTTT
*
74396 AAAACTATATAATATATAAACGTTTTCAAAATGTTTTT
1 AAAACTATATAATATAT--ATGTTTTCAAAATGTTTTT
* *
74434 AAAACTATATACTATATATGTTTTCAAAATGTTTTA
1 AAAACTATATAATATATATGTTTTCAAAATGTTTTT
* *
74470 AAAACTATATAATATATAAACGTTTTCAAAATGTTTTC
1 AAAACTATATAATATAT--ATGTTTTCAAAATGTTTTT
* * * *
74508 AAAACTATAT-AT-TATATATTTTAAAAATATTTTCA
1 AAAACTATATAATATATATGTTTTCAAAATGTTTT-T
74543 AAAACTATATAATATATA
1 AAAACTATATAATATATA
74561 AATTTTTGAA
Statistics
Matches: 232, Mismatches: 24, Indels: 33
0.80 0.08 0.11
Matches are distributed among these distances:
30 5 0.02
31 6 0.03
32 4 0.02
34 23 0.10
35 18 0.08
36 64 0.28
37 12 0.05
38 91 0.39
39 8 0.03
40 1 0.00
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (36 bp):
AAAACTATATAATATATATGTTTTCAAAATGTTTTT
Found at i:74393 original size:74 final size:73
Alignment explanation
Indices: 74311--74573 Score: 363
Period size: 74 Copynumber: 3.6 Consensus size: 73
74301 AGTTTTCAGA
* * *
74311 AAAATGTTTTTAAAACTATATATTATAT-AA-TTTCACAAAAAATGTTTTTAAAACTATATACTA
1 AAAATGTTTTAAAAACTATATAATATATAAACTTT-TC--AAAATGTTTTTAAAACTATATACTA
74374 TATATGTTTTC
63 TATATGTTTTC
74385 AAAATGTTTTAAAAACTATATAATATATAAACGTTTTCAAAATGTTTTTAAAACTATATACTATA
1 AAAATGTTTTAAAAACTATATAATATATAAAC-TTTTCAAAATGTTTTTAAAACTATATACTATA
74450 TATGTTTTC
65 TATGTTTTC
*
74459 AAAATGTTTTAAAAACTATATAATATATAAACGTTTTCAAAATGTTTTCAAAACTATATA-T-TA
1 AAAATGTTTTAAAAACTATATAATATATAAAC-TTTTCAAAATGTTTTTAAAACTATATACTATA
* *
74522 TATATTTTA
65 TATGTTTTC
* * *
74531 AAAATATTTTCAAAAACTATATAATATATAAATTTTTGAAAAT
1 AAAATGTTTT-AAAAACTATATAATATATAAACTTTTCAAAAT
74574 CATTTTCTGA
Statistics
Matches: 176, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
72 27 0.15
73 22 0.12
74 121 0.69
75 2 0.01
76 1 0.01
77 3 0.02
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (73 bp):
AAAATGTTTTAAAAACTATATAATATATAAACTTTTCAAAATGTTTTTAAAACTATATACTATAT
ATGTTTTC
Found at i:75446 original size:164 final size:165
Alignment explanation
Indices: 75256--76207 Score: 1367
Period size: 165 Copynumber: 5.8 Consensus size: 165
75246 AGGTCTTCGG
* * *
75256 TTGGCAGATAACCCTTCTCAACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTAAGCGTAGT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
* * * *
75321 CGAACTCGAAGGTC-TTTAGTAACAGATAACCCTTCTAGCCTTGAGTTATGCTATAAATGATATG
66 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
* *
75385 CCCTCGAAGTTGAGTGTAATCAAACTCGGGGGTCT
131 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCT
* * *
75420 TTGGCAGATAGCCCTTCTCGACTTAAGTTATACTGTAAATGATGTGCCTGGGAGCTGAGCGTAGT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
* ** *
75485 CGAACTCGAAGGTC-TTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATATTGTGAATGATGTG
66 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
* * * *
75549 CCCTCCAAGCTGAGAGTAATTGAACTCGAGGGTCT
131 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCT
* * *
75584 TTGGCAGATAGCCCTTATCGACTTAAGCTATACTGTAAATGATGTGCCTTAGAGCTGAGCGTAGT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
75649 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
66 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
75714 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCT
131 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCT
*
75749 TTGGCAGATAGCCCTTCTCGACTTAAGTTATACTGCAAATGATGTGCCGTT-GAGCTGAGCGTAG
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCC-TTGGAGCTGAGCGTAG
* * *
75813 TCGAACTCAAAGATCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATACTGTAAATGATGT
65 TCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGT
75878 GCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCT
130 GCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCT
75914 TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTT-GAGCTGAGCGTAG
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCC-TTGGAGCTGAGCGTAG
* * ** * * * * * * *
75978 TCGAACTCAAAGGTC-TTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTGATGCAAATGATAT
65 TCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGT
* * * * **
76042 G-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
130 GCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTC--T
* * *
76079 GGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTA
1 --TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTA
* *
76144 GTCGAACTCGAAGATCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGAT
64 GTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
76208 TTGTTTTAAA
Statistics
Matches: 711, Mismatches: 69, Indels: 12
0.90 0.09 0.02
Matches are distributed among these distances:
163 27 0.04
164 259 0.36
165 311 0.44
166 4 0.01
167 71 0.10
168 39 0.05
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (165 bp):
TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCT
Found at i:76137 original size:84 final size:84
Alignment explanation
Indices: 75238--76207 Score: 885
Period size: 84 Copynumber: 11.7 Consensus size: 84
75228 GAATATAATT
* * *
75238 GAACTCGGAGGTCTTCGGTTGGCAGATAACCCTTCTCA-ACTTAAGCTATACTGCAAATGATGTG
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCT-AGACTTAAGTTATACTGCAAATGATGTG
*
75302 CCTTGGAGCTAAGCGTAGTC
65 CCTTGGAGCTGAGCGTAGTC
* ** * * * ** *
75322 GAACTCGAAGGTCTTTAG-TAACAGATAACCCTTCTAGCCTTGAGTTATGCTATAAATGATATGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTG-
* * * * *
75386 CCTCGAAGTTGAGTGTAATC
65 CCTTGGAGCTGAGCGTAGTC
* ** * * *
75406 AAACTCGGGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGTTATACTGTAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGC
*
75467 CTGGGAGCTGAGCGTAGTC
66 CTTGGAGCTGAGCGTAGTC
* * * * **
75486 GAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATATTGTGAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTG-
*** * * *
75550 CCTCCAAGCTGAGAGTAATT
65 CCTTGGAGCTGAGCGTAGTC
* * * * * *
75570 GAACTCGAGGGTC--T--TTGGCAGATAGCCCTTATCGACTTAAGCTATACTGTAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGC
*
75631 CTTAGAGCTGAGCGTAGTC
66 CTTGGAGCTGAGCGTAGTC
** * * * *
75650 GAACTCGAAGGTCTTTTGG-TCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
1 GAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTG
* * * *
75714 CCCTCGAAGCTGAGTGTAATC
65 -CCTTGGAGCTGAGCGTAGTC
** * *
75735 GAACTCGGGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGTTATACTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGC
75796 CGTT-GAGCTGAGCGTAGTC
66 C-TTGGAGCTGAGCGTAGTC
* * ** * * *
75815 GAACTCAAAGATCTTTTGG-TCACAGATAACCCTTCTAGCCTTGAGTTATACTGTAAATGATGTG
1 GAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTG
* * * *
75879 CCCTCGAAGCTGAGTGTAATC
65 -CCTTGGAGCTGAGCGTAGTC
** * * *
75900 GAACTCGGGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGC
75961 CGTT-GAGCTGAGCGTAGTC
66 C-TTGGAGCTGAGCGTAGTC
* * * *
75980 GAACTCAAAGGTCTTT-GTTGGCAGACAACCCTTCTAGACTTAAGTTGTGA-TGCAAATGATATG
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTAT-ACTGCAAATGATGTG
76043 CCTTGGAGCTGAGCGTAGTC
65 CCTTGGAGCTGAGCGTAGTC
* *
76063 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGC
76128 CTTGGAGCTGAGCGTAGTC
66 CTTGGAGCTGAGCGTAGTC
* ** * * *
76147 GAACTCGAAGATCTTTTGG-TCACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGAT
1 GAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGAT
76208 TTGTTTTAAA
Statistics
Matches: 704, Mismatches: 148, Indels: 68
0.77 0.16 0.07
Matches are distributed among these distances:
80 98 0.14
81 148 0.21
82 9 0.01
83 144 0.20
84 251 0.36
85 54 0.08
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (84 bp):
GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGC
CTTGGAGCTGAGCGTAGTC
Found at i:81028 original size:20 final size:21
Alignment explanation
Indices: 81004--81081 Score: 69
Period size: 20 Copynumber: 3.9 Consensus size: 21
80994 AACAAAATGC
81004 TAATAAAT-AAAAAATGAATAA
1 TAATAAATAAAAAAAT-AATAA
*
81025 -AATATATAAAAAAATAATAA
1 TAATAAATAAAAAAATAATAA
*
81045 TAAT-AATGAAAGAAAT-A-AA
1 TAATAAAT-AAAAAAATAATAA
81064 TAATAAA-AAAAATAATAA
1 TAATAAATAAAAA-AATAA
81082 AAGGTTAAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
18 4 0.09
19 9 0.19
20 17 0.36
21 17 0.36
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (21 bp):
TAATAAATAAAAAAATAATAA
Found at i:81036 original size:21 final size:21
Alignment explanation
Indices: 81012--81069 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 21
81002 GCTAATAAAT
81012 AAAAAATGAATAA-AATATAT-A
1 AAAAAAT-AATAATAATA-ATGA
81033 AAAAAATAATAATAATAATGA
1 AAAAAATAATAATAATAATGA
*
81054 AAGAAATAAATAATAA
1 AAAAAAT-AATAATAA
81070 AAAAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
20 7 0.21
21 18 0.55
22 8 0.24
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.22
Consensus pattern (21 bp):
AAAAAATAATAATAATAATGA
Found at i:81040 original size:12 final size:11
Alignment explanation
Indices: 81004--81083 Score: 56
Period size: 12 Copynumber: 6.7 Consensus size: 11
80994 AACAAAATGC
81004 TAATAAATAAAA
1 TAATAAA-AAAA
*
81016 -AATGAATAAAA
1 TAAT-AAAAAAA
81027 TATATAAAAAAA
1 TA-ATAAAAAAA
*
81039 TAATAATAATAA
1 TAATAA-AAAAA
81051 TGAA-AGAAATAAA
1 T-AATA-AAA-AAA
81064 TAATAAAAAAAA
1 TAAT-AAAAAAA
81076 TAATAAAA
1 TAATAAAA
81084 GGTTAAGTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 19
0.71 0.05 0.24
Matches are distributed among these distances:
11 15 0.27
12 28 0.51
13 11 0.20
14 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.23
Consensus pattern (11 bp):
TAATAAAAAAA
Found at i:81067 original size:16 final size:16
Alignment explanation
Indices: 81008--81078 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
80998 AAATGCTAAT
* * *
81008 AAATAAAAAATGAATA
1 AAATAAATAATAAAAA
*
81024 AAATATATAA-AAAAA
1 AAATAAATAATAAAAA
*
81039 TAAT-AATAATAATGAAA
1 AAATAAATAATAA--AAA
81056 GAAATAAATAATAAAAA
1 -AAATAAATAATAAAAA
81073 AAATAA
1 AAATAA
81079 TAAAAGGTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
14 4 0.09
15 8 0.19
16 14 0.33
17 6 0.14
18 3 0.07
19 8 0.19
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (16 bp):
AAATAAATAATAAAAA
Found at i:82432 original size:35 final size:34
Alignment explanation
Indices: 82372--82454 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
82362 TATAATATAT
* * *
82372 AAACTATATATATATATATTCAAAAATATGTTTTAGA
1 AAACTATATAT-TATATATT-AAAAAAAAG-TTTACA
* *
82409 AAACTATATATTATA-CTTAAAAAAAAGTTTCCA
1 AAACTATATATTATATATTAAAAAAAAGTTTACA
82442 AAACTATATATTA
1 AAACTATATATTA
82455 CATAGTTTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
33 17 0.41
34 7 0.17
35 2 0.05
36 4 0.10
37 11 0.27
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (34 bp):
AAACTATATATTATATATTAAAAAAAAGTTTACA
Found at i:82548 original size:38 final size:38
Alignment explanation
Indices: 82372--82677 Score: 174
Period size: 38 Copynumber: 8.5 Consensus size: 38
82362 TATAATATAT
*
82372 AAACTATATA-TATAT-ATATTCA-AAAATATGTTTTAGA
1 AAACTATATATTATATAAT-TTCACAAAAAATGTTTTA-A
* * **
82409 AAACTATATA-T-TAT-ACTT-A-AAAAAAAGTTTCCA
1 AAACTATATATTATATAATTTCACAAAAAATGTTTTAA
* * * *
82442 AAACTATATATTACATAGTTT-TC--AAAACGTTTTAA
1 AAACTATATATTATATAATTTCACAAAAAATGTTTTAA
* *
82477 AAA-TAT-TA-TATA-AGTTTTCA-AAAAAATGTTTTTA
1 AAACTATATATTATATA-ATTTCACAAAAAATGTTTTAA
*
82511 AAACTATATATTATATAATTTCACAAAAAATGTTTTTA
1 AAACTATATATTATATAATTTCACAAAAAATGTTTTAA
* **
82549 AAACTATATACTATAT-ATGTTTTC--AAAATGTTTTAA
1 AAACTATATATTATATAAT-TTCACAAAAAATGTTTTAA
* * *
82585 AAACTATATAATATATAAACGTTT-TC--AAAATGTTTTCA
1 AAACTATATATTATAT-AA--TTTCACAAAAAATGTTTTAA
* * *
82623 AAACTATATATTATATATATTTTA-AAAATAT-TTTCAA
1 AAACTATATATTATATA-ATTTCACAAAAAATGTTTTAA
*
82660 AAACTATATAATATATAA
1 AAACTATATATTATATAA
82678 ATTTTTGAAA
Statistics
Matches: 217, Mismatches: 30, Indels: 45
0.74 0.10 0.15
Matches are distributed among these distances:
31 1 0.00
32 6 0.03
33 13 0.06
34 27 0.12
35 19 0.09
36 38 0.18
37 43 0.20
38 67 0.31
39 2 0.01
40 1 0.00
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (38 bp):
AAACTATATATTATATAATTTCACAAAAAATGTTTTAA
Found at i:82588 original size:74 final size:72
Alignment explanation
Indices: 82498--82677 Score: 227
Period size: 74 Copynumber: 2.4 Consensus size: 72
82488 AAGTTTTCAA
* * *
82498 AAAAATGTTTTTAAAACTATATATTATATAA-TTTCACAAAAAATGTTTTTAAAACTATATACTA
1 AAAAATGTTTTAAAAACTATATAATATATAACTTT-AC--AAAATGTTTTCAAAACTATATACTA
*
82562 TATATGTTTT
63 TATATATTTT
* * *
82572 CAAAATGTTTTAAAAACTATATAATATATAAACGTTTTCAAAATGTTTTCAAAACTATATATTAT
1 AAAAATGTTTTAAAAACTATATAATATAT-AAC-TTTACAAAATGTTTTCAAAACTATATACTAT
82637 ATATATTTT
64 ATATATTTT
*
82646 AAAAATATTTTCAAAAACTATATAATATATAA
1 AAAAATGTTTT-AAAAACTATATAATATATAA
82678 ATTTTTGAAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
74 69 0.74
75 20 0.22
76 1 0.01
77 3 0.03
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.42
Consensus pattern (72 bp):
AAAAATGTTTTAAAAACTATATAATATATAACTTTACAAAATGTTTTCAAAACTATATACTATAT
ATATTTT
Found at i:82689 original size:74 final size:74
Alignment explanation
Indices: 82537--82715 Score: 234
Period size: 74 Copynumber: 2.4 Consensus size: 74
82527 AATTTCACAA
* * * * *
82537 AAAATGTTTTTAAAACTATATACTATATATGTTTTCAAAATGTTTTAAAAACTATATAATATATA
1 AAAATGTTTTCAAAACTATATATTATATATATTTTAAAAATATTTTAAAAACTATATAATATATA
82602 AACGTTTTC
66 AACGTTTTC
82611 AAAATGTTTTCAAAACTATATATTATATATATTTTAAAAATATTTTCAAAAACTATATAATATAT
1 AAAATGTTTTCAAAACTATATATTATATATATTTTAAAAATATTTT-AAAAACTATATAATATAT
* *
82676 AAA-TTTTTG
65 AAACGTTTTC
* *
82685 AAAATCATTTTCTGAAAATTATATATTATAT
1 AAAAT-GTTTTC--AAAACTATATATTATAT
82716 TTTGTCAAAA
Statistics
Matches: 92, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
74 50 0.54
75 26 0.28
77 16 0.17
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (74 bp):
AAAATGTTTTCAAAACTATATATTATATATATTTTAAAAATATTTTAAAAACTATATAATATATA
AACGTTTTC
Found at i:82708 original size:75 final size:73
Alignment explanation
Indices: 82537--82743 Score: 213
Period size: 74 Copynumber: 2.8 Consensus size: 73
82527 AATTTCACAA
* * * * *
82537 AAAATGTTTTTAAAACTATATACTATATATGTTTTCAAAATGTTTTAAAAACTATATAATATATA
1 AAAATATTTTCAAAACTATATA-TATATATATTTTAAAAATATTTTAAAAACTATATAATATATA
82602 AACGTTTTC
65 AACGTTTTC
*
82611 AAAATGTTTTCAAAACTATATATTATATATATTTTAAAAATATTTTCAAAAACTATATAATATAT
1 AAAATATTTTCAAAACTATATA-TATATATATTTTAAAAATATTTT-AAAAACTATATAATATAT
* *
82676 AAA-TTTTTG
64 AAACGTTTTC
* * *
82685 AAAATCATTTTCTGAAAATTATATAT-TATAT-TTTGTCAAAAACATTTTTACAAACTATA
1 AAAAT-ATTTTC--AAAACTATATATATATATATTT-T-AAAAATA-TTTTAAAAACTATA
82744 ATAAAAAAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
74 53 0.46
75 32 0.28
76 16 0.14
77 14 0.12
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (73 bp):
AAAATATTTTCAAAACTATATATATATATATTTTAAAAATATTTTAAAAACTATATAATATATAA
ACGTTTTC
Found at i:83094 original size:32 final size:32
Alignment explanation
Indices: 83058--83131 Score: 96
Period size: 31 Copynumber: 2.3 Consensus size: 32
83048 AATATATAAT
* *
83058 ATATGGTCACTTTTCATTTTTATTTAATTAAG
1 ATATGGTCACTTTTCATTTTAATCTAATTAAG
* *
83090 ATATGATCAC-TTTCGTTTTAATCTAATTAAG
1 ATATGGTCACTTTTCATTTTAATCTAATTAAG
*
83121 ATGTGGTCACT
1 ATATGGTCACT
83132 ATGGGTTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 26 0.74
32 9 0.26
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (32 bp):
ATATGGTCACTTTTCATTTTAATCTAATTAAG
Found at i:83812 original size:31 final size:32
Alignment explanation
Indices: 83768--83857 Score: 130
Period size: 31 Copynumber: 2.8 Consensus size: 32
83758 AATATATTTA
83768 TTAAATATATATTTTATTCTTATTTAAACTTT
1 TTAAATATATATTTTATTCTTATTTAAACTTT
*
83800 TTAAA-ATATATTTTATTATTATTTAAACTTT
1 TTAAATATATATTTTATTCTTATTTAAACTTT
*
83831 TCAAAGTATATATTTTA-TCTTAATTTA
1 TTAAA-TATATATTTTATTCTT-ATTTA
83858 CTAAATATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
31 29 0.56
32 8 0.15
33 15 0.29
ACGTcount: A:0.37, C:0.06, G:0.01, T:0.57
Consensus pattern (32 bp):
TTAAATATATATTTTATTCTTATTTAAACTTT
Found at i:83844 original size:28 final size:28
Alignment explanation
Indices: 83776--83876 Score: 82
Period size: 31 Copynumber: 3.5 Consensus size: 28
83766 TATTAAATAT
* *
83776 ATATTTTATTCTTATTTAAACTTTTTAAA
1 ATATATTATT-TTATTTAAACTTTTCAAA
83805 ATATATTTTATTATTATTTAAACTTTTCAAA
1 ATATA--TTATT-TTATTTAAACTTTTCAAA
* * *
83836 GTATA-TATTTTATCTT-AA-TTTACTAA
1 ATATATTATTTTAT-TTAAACTTTTCAAA
*
83862 ATATATTATATTATT
1 ATATATTATTTTATT
83877 ATTTTAAATT
Statistics
Matches: 60, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
26 11 0.18
27 13 0.22
28 6 0.10
29 4 0.07
31 26 0.43
ACGTcount: A:0.37, C:0.06, G:0.01, T:0.56
Consensus pattern (28 bp):
ATATATTATTTTATTTAAACTTTTCAAA
Found at i:83964 original size:27 final size:27
Alignment explanation
Indices: 83924--84036 Score: 94
Period size: 27 Copynumber: 4.2 Consensus size: 27
83914 TTTTCACATA
*
83924 AAATATATTTTAAATTAAAATAAAAATT
1 AAATATATTTTAAATTAATATAAAAA-T
*
83952 AAATAT-TTTTAAATTAAGT-TAATAAT
1 AAATATATTTTAAATTAA-TATAAAAAT
*
83978 AAAATATATTTAATAAGTTAATAT--AAA-
1 -AAATATATTT--TAAATTAATATAAAAAT
* *
84005 AAATATTTTTTAAATTAATATAAATA-
1 AAATATATTTTAAATTAATATAAAAAT
84031 AAATAT
1 AAATAT
84037 TATGAACTTA
Statistics
Matches: 70, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
24 10 0.14
26 18 0.26
27 22 0.31
28 11 0.16
29 1 0.01
30 8 0.11
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (27 bp):
AAATATATTTTAAATTAATATAAAAAT
Found at i:84000 original size:25 final size:26
Alignment explanation
Indices: 83921--84028 Score: 89
Period size: 24 Copynumber: 4.2 Consensus size: 26
83911 ATATTTTCAC
* * *
83921 ATAAAATATATTTTAAATTAAAATAAAA
1 ATAAAATATA-TTTAAATT-AAGTTAAT
* *
83949 ATTAAATATTTTTAAATTAAGTTAAT
1 ATAAAATATATTTAAATTAAGTTAAT
83975 AATAAAATATATTT-AA-TAAGTTAAT
1 -ATAAAATATATTTAAATTAAGTTAAT
* * *
84000 ATAAAAAATATTT--TTTAAATTAAT
1 ATAAAATATATTTAAATTAAGTTAAT
84024 ATAAA
1 ATAAA
84029 TAAAATATTA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
24 25 0.37
25 9 0.13
26 7 0.10
27 19 0.28
28 8 0.12
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (26 bp):
ATAAAATATATTTAAATTAAGTTAAT
Found at i:84010 original size:24 final size:24
Alignment explanation
Indices: 83966--84037 Score: 81
Period size: 24 Copynumber: 2.9 Consensus size: 24
83956 ATTTTTAAAT
*
83966 TAAGTTAATAATAAAATATATTTAA
1 TAAGTTAAT-ATAAAAAATATTTAA
**
83991 TAAGTTAATATAAAAAATATTTTT
1 TAAGTTAATATAAAAAATATTTAA
*
84015 TAAATTAATATAAATAAAATATT
1 TAAGTTAATAT-AA-AAAATATT
84038 ATGAACTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
24 22 0.54
25 11 0.27
26 8 0.20
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (24 bp):
TAAGTTAATATAAAAAATATTTAA
Found at i:85782 original size:12 final size:12
Alignment explanation
Indices: 85753--85843 Score: 53
Period size: 12 Copynumber: 7.3 Consensus size: 12
85743 AATTATTAAC
85753 ATATTTAA-AAT
1 ATATTTAATAAT
*
85764 ATATTTATTAAT
1 ATATTTAATAAT
*
85776 ATTTTTAATAAT
1 ATATTTAATAAT
*
85788 ATAATATAATATATT
1 AT-ATTTAATA-A-T
*
85803 ATTATTAAAATAAT
1 A-TATT-TAATAAT
* *
85817 ATACTCAAT--T
1 ATATTTAATAAT
85827 ATATTATAATAAT
1 ATATT-TAATAAT
85840 ATAT
1 ATAT
85844 GATAAATTAT
Statistics
Matches: 60, Mismatches: 11, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
10 5 0.08
11 10 0.17
12 18 0.30
13 14 0.23
14 3 0.05
15 5 0.08
16 5 0.08
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATTTAATAAT
Found at i:85782 original size:23 final size:23
Alignment explanation
Indices: 85735--85792 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
85725 CATTTTAATA
85735 AAAATATTAATTATTAACATATTT
1 AAAATA-TAATTATTAACATATTT
* * *
85759 AAAATATATTTATTAATATTTTT
1 AAAATATAATTATTAACATATTT
85782 AATAATATAAT
1 AA-AATATAAT
85793 ATAATATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 16 0.55
24 13 0.45
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
AAAATATAATTATTAACATATTT
Found at i:85801 original size:24 final size:24
Alignment explanation
Indices: 85774--85861 Score: 72
Period size: 24 Copynumber: 3.6 Consensus size: 24
85764 ATATTTATTA
* *
85774 ATATTTTTAATAATATAATATAAT
1 ATATTATTAATAAAATAATATAAT
* *
85798 ATATTATTATTAAAATAATATACT
1 ATATTATTAATAAAATAATATAAT
* *
85822 CA-ATTATATTATAATAAT-ATATGAT
1 -ATATTAT-TAATAA-AATAATATAAT
*
85847 AAATTATTAATAAAA
1 ATATTATTAATAAAA
85862 GTTATATTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
23 2 0.04
24 31 0.61
25 15 0.29
26 3 0.06
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (24 bp):
ATATTATTAATAAAATAATATAAT
Found at i:86113 original size:29 final size:33
Alignment explanation
Indices: 86050--86118 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 33
86040 GTAATTTATC
**
86050 ATATTTTTATTTTAATAGAATATACTAGAGTTA
1 ATATTTTTATTTTAATAGAATATACTAGAAATA
86083 ATATTTTTA-TTT-ATAGAAT-TA-TAGAAATA
1 ATATTTTTATTTTAATAGAATATACTAGAAATA
86112 ATATTTT
1 ATATTTT
86119 AATAATGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 13 0.38
30 2 0.06
31 7 0.21
32 3 0.09
33 9 0.26
ACGTcount: A:0.41, C:0.01, G:0.07, T:0.51
Consensus pattern (33 bp):
ATATTTTTATTTTAATAGAATATACTAGAAATA
Found at i:86179 original size:22 final size:23
Alignment explanation
Indices: 86137--86179 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
86127 TATTGGAATA
*
86137 AATAGTTTTAAATAAATTATTCT
1 AATAGTTTTAAATAAAATATTCT
86160 AATA-TTTTAAA-AATAATATT
1 AATAGTTTTAAATAA-AATATT
86180 AAGTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 2 0.11
22 12 0.67
23 4 0.22
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
AATAGTTTTAAATAAAATATTCT
Found at i:86363 original size:35 final size:34
Alignment explanation
Indices: 86297--86367 Score: 79
Period size: 35 Copynumber: 2.1 Consensus size: 34
86287 CACCATAAAA
* * *
86297 CATTTTCCAGAAAATGTTTTCCAGAAGATGTAATT
1 CATTTTACAGAAAATATTTTCCAGAAAATGT-ATT
* **
86332 CATTTTACATAAAATATTTTCTGGAAAATGTATT
1 CATTTTACAGAAAATATTTTCCAGAAAATGTATT
86366 CA
1 CA
86368 GTGAAACAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
34 5 0.17
35 25 0.83
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (34 bp):
CATTTTACAGAAAATATTTTCCAGAAAATGTATT
Found at i:86607 original size:17 final size:16
Alignment explanation
Indices: 86576--86628 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
86566 ATATCAATTT
86576 AAACTATAATAAAATAA
1 AAAC-ATAATAAAATAA
86593 AAACATAATACAAATAA
1 AAACATAATA-AAATAA
*
86610 AAA-ATAATTATAATAA
1 AAACATAA-TAAAATAA
86626 AAA
1 AAA
86629 TATATATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 18 0.55
17 15 0.45
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.23
Consensus pattern (16 bp):
AAACATAATAAAATAA
Found at i:87282 original size:20 final size:20
Alignment explanation
Indices: 87259--87297 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
87249 CTATTAATTA
87259 AATACTAATTTAAATTTATC
1 AATACTAATTTAAATTTATC
*
87279 AATACTAATTTTAATTTAT
1 AATACTAATTTAAATTTAT
87298 TTAATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (20 bp):
AATACTAATTTAAATTTATC
Found at i:87611 original size:2 final size:2
Alignment explanation
Indices: 87604--87647 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
87594 AATAATTTTA
87604 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87646 AT
1 AT
87648 TGTCGACACC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90613 original size:175 final size:170
Alignment explanation
Indices: 90377--90738 Score: 419
Period size: 175 Copynumber: 2.1 Consensus size: 170
90367 GGACATGTTC
* *
90377 TTCTCATTATGAACT-T-CTTATCGGATGAGTTCTTCTCATTATAAACTCTCCGCTGGAAATATT
1 TTCTCATTATGAACTCTCCTTATCGGATGAGCTCTTCTCATTATAAACTCTCCGATGGAAATATT
* *** * * * *
90440 GATCCCTCAAGCGAGGTGTTGTTGATTCAACTCCATATGCGATGAATTGAGCGAT-GTTTGAACA
66 GATCCCTCAAGCGAGGCGTCACTGATTCAA----A-ATGCCATGAATCGAGCGATAGGTCGAACA
* *
90504 AGTTCTTCTCATTATGAACTTATTATCCC-TGATCGGATGAGTTA
126 AGCTCTTCTCATTATGAACTTATTATCCCTTGATCGAATGAGTTA
* * * *
90548 TTCTCATTATGAACTCTCACTCTTTCGGATGAGCTCTTCTGATTATGAACTCT-CTATGTGAAAT
1 TTCTCATTATGAACTCTC-CT-TATCGGATGAGCTCTTCTCATTATAAACTCTCCGATG-GAAAT
*
90612 ATTGATCCCTCAAGCGAGGCGTCACTGATTCAAAATGCCATGAATCGAGTGATAGGTCGAACAAG
63 ATTGATCCCTCAAGCGAGGCGTCACTGATTCAAAATGCCATGAATCGAGCGATAGGTCGAACAAG
* * * **
90677 CTCTTCTTATTATGAACTTCTTCTCCCTTTTTCGAATGAGTTA
128 CTCTTCTCATTATGAACTTATTATCCCTTGATCGAATGAGTTA
90720 TTCTCATTATGAACTCTCC
1 TTCTCATTATGAACTCTCC
90739 ATTGGAAATG
Statistics
Matches: 162, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
170 16 0.10
171 49 0.30
172 31 0.19
174 5 0.03
175 61 0.38
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.36
Consensus pattern (170 bp):
TTCTCATTATGAACTCTCCTTATCGGATGAGCTCTTCTCATTATAAACTCTCCGATGGAAATATT
GATCCCTCAAGCGAGGCGTCACTGATTCAAAATGCCATGAATCGAGCGATAGGTCGAACAAGCTC
TTCTCATTATGAACTTATTATCCCTTGATCGAATGAGTTA
Found at i:90892 original size:139 final size:135
Alignment explanation
Indices: 90575--90893 Score: 354
Period size: 136 Copynumber: 2.3 Consensus size: 135
90565 CACTCTTTCG
* * * * *
90575 GATGAGCTCTTCTGATTATGAACTCTCTATGTGAAATATTGATCCCTCAAGCGAGGCGTCACTGA
1 GATGAGTTCTTCTCATTATGAACTCTCTATTTGAAATGTTGATTCCTCAAGCGAGGCGTCACTGA
* *
90640 TTCAAAATGCCATGAATCGAGTGATAGGTCGAACAAGCTCTTCTTATTATGAACTTCTTCTCCCT
66 TTCAAAATGCCATGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCT
**
90705 TTTTC
131 TCATC
* * * * **
90710 GAATGAGTTATTCTCATTATGAACTCTCCATTGGAAATGTTGATTCCTCAAGCGAGGTGTTGCTG
1 G-ATGAGTTCTTCTCATTATGAACTCTCTATTTGAAATGTTGATTCCTCAAGCGAGGCGTCACTG
** * * * *
90775 ATTCAACTCCATATGTGATTAATCGAGCGA-AGGTTGAACAAGTTCTTCTCATTATGAACTTTTT
65 ATTCAA----A-ATGCCATGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTT
90839 CTCCC-TCATC
125 CTCCCTTCATC
* *
90849 AGATGAGTTCTTATCATTATAAACTCTCTATTTGAAATGTTGATT
1 -GATGAGTTCTTCTCATTATGAACTCTCTATTTGAAATGTTGATT
90894 GGTTTACCAT
Statistics
Matches: 151, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
135 1 0.01
136 58 0.38
139 41 0.27
140 37 0.25
141 14 0.09
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (135 bp):
GATGAGTTCTTCTCATTATGAACTCTCTATTTGAAATGTTGATTCCTCAAGCGAGGCGTCACTGA
TTCAAAATGCCATGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCT
TCATC
Found at i:92004 original size:42 final size:42
Alignment explanation
Indices: 91862--91994 Score: 119
Period size: 42 Copynumber: 3.2 Consensus size: 42
91852 AGGTCTTATG
* * * * *
91862 GATGGTCCGAATGACTTA-TCATCTTGCTCGAAGGACTTA-T
1 GATGGCCCGAAGGACTTACTCATCATGCTCAAAAGACTTACT
* * * * *
91902 AGATGACCCGAAGCATTTAAGT-ATCATGCTCAAAAGGCTTACT
1 -GATGGCCCGAAGGACTT-ACTCATCATGCTCAAAAGACTTACT
* *
91945 GATGGCCCGTAGGACTTACTCATCATGCTCGAAAGACTTACT
1 GATGGCCCGAAGGACTTACTCATCATGCTCAAAAGACTTACT
91987 GATGGCCC
1 GATGGCCC
91995 AACTGACTTA
Statistics
Matches: 72, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
41 14 0.19
42 56 0.78
43 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (42 bp):
GATGGCCCGAAGGACTTACTCATCATGCTCAAAAGACTTACT
Found at i:92131 original size:84 final size:84
Alignment explanation
Indices: 92010--92213 Score: 293
Period size: 84 Copynumber: 2.4 Consensus size: 84
92000 ACTTATGCTG
* * *
92010 ATTCGAAGTGTTGTGAATCGAGCAGAGGAAATGTTGAAAACATCCTGCCCGAAGGTCTTATGGAT
1 ATTCGAAGTG-TGTGAATCGAGCAAAGGAAATGTTGAAAACACCCTGCCCGAAGGTCTTATGAAT
**
92075 GG-CTCGAATTACTTAAGCCA
65 GGCCT-GAAGGACTTAAGCCA
*
92095 ATTCGAAGTGTGTGAATCGGGCAAAGGAAATGTTGAAAACACCCTGCCCGAAGGTCTTATGAATG
1 ATTCGAAGTGTGTGAATCGAGCAAAGGAAATGTTGAAAACACCCTGCCCGAAGGTCTTATGAATG
**
92160 GCCTGAAGGACTTAAGCTG
66 GCCTGAAGGACTTAAGCCA
*
92179 ATTCAAAGTGTGTGAATCGAGCAATAGGAAATGTT
1 ATTCGAAGTGTGTGAATCGAGCAA-AGGAAATGTT
92214 AACCTCTCTG
Statistics
Matches: 107, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
84 85 0.79
85 22 0.21
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (84 bp):
ATTCGAAGTGTGTGAATCGAGCAAAGGAAATGTTGAAAACACCCTGCCCGAAGGTCTTATGAATG
GCCTGAAGGACTTAAGCCA
Found at i:92443 original size:141 final size:143
Alignment explanation
Indices: 92095--92458 Score: 491
Period size: 144 Copynumber: 2.6 Consensus size: 143
92085 ACTTAAGCCA
* * * * *
92095 ATTCGAAGTG-TGTGAATCGGGCAAAGGAAATGTTGAAAACACCCTGCCCGAAGGTCTTATGAAT
1 ATTCGAAGTGTTGTGAATCGAGAAAAGGAAATGTTGAAAACAACATGCCCGAAGGTCTTATGGAT
* * *
92159 GGCCTGAAGGACTTAAGCTGATTCAAAGTGTGTGAATCGAGCAATAGGAAATGTTAACCTCTCTG
66 GGCCTGAAAGACTTAAGCTGATTCAAAGTGTGTGAATCGAGCAAAAGGAAATGTT-ACCCCTCTG
**
92224 GTGGGGCATTACTG
130 GTAAGGCATTACTG
* * * * ** *
92238 ATACGAAGTGTTGTGAATTGAGAAAAGTAAATGTTGAAAACATCATTACTGAAGGTCTTATGGAT
1 ATTCGAAGTGTTGTGAATCGAGAAAAGGAAATGTTGAAAACAACATGCCCGAAGGTCTTATGGAT
* *
92303 GGCCCGAAAGACTTAAGCTGATTCGAAGTGTGTGAATCGAGCAAAAGGAAATG-T-CCCCTCTGG
66 GGCCTGAAAGACTTAAGCTGATTCAAAGTGTGTGAATCGAGCAAAAGGAAATGTTACCCCTCTGG
* *
92366 TAAGGCGTTGCTG
131 TAAGGCATTACTG
* *
92379 ATTCAAAGTGTTGTGAATCGAGAAAAGGAAATGCTGAAAACAACATGCCCGAAGGTCTTATGGAT
1 ATTCGAAGTGTTGTGAATCGAGAAAAGGAAATGTTGAAAACAACATGCCCGAAGGTCTTATGGAT
92444 GGCCTGAAAGACTTA
66 GGCCTGAAAGACTTA
92459 TCATCTTGCT
Statistics
Matches: 190, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
141 87 0.46
143 10 0.05
144 93 0.49
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (143 bp):
ATTCGAAGTGTTGTGAATCGAGAAAAGGAAATGTTGAAAACAACATGCCCGAAGGTCTTATGGAT
GGCCTGAAAGACTTAAGCTGATTCAAAGTGTGTGAATCGAGCAAAAGGAAATGTTACCCCTCTGG
TAAGGCATTACTG
Found at i:92492 original size:20 final size:20
Alignment explanation
Indices: 92467--92583 Score: 69
Period size: 20 Copynumber: 5.7 Consensus size: 20
92457 TATCATCTTG
92467 CTCGAAAGACTTATAGATGA
1 CTCGAAAGACTTATAGATGA
* * *
92487 CTCGAAGGATTTA-AGCATCA
1 CTCGAAAGACTTATAG-ATGA
92507 CGCTCGAAAGACTTATAGATGA
1 --CTCGAAAGACTTATAGATGA
* * * *
92529 CTTGAAGGATTTA-AGCATCA
1 CTCGAAAGACTTATAG-ATGA
* *
92549 CGCTCGAAAGACTTATTGATGG
1 --CTCGAAAGACTTATAGATGA
92571 CTC-AAAGGACTTA
1 CTCGAAA-GACTTA
92584 CTCATCCAGA
Statistics
Matches: 72, Mismatches: 16, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
19 7 0.10
20 36 0.50
22 26 0.36
23 3 0.04
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (20 bp):
CTCGAAAGACTTATAGATGA
Found at i:92513 original size:42 final size:42
Alignment explanation
Indices: 92466--92579 Score: 192
Period size: 42 Copynumber: 2.7 Consensus size: 42
92456 TTATCATCTT
92466 GCTCGAAAGACTTATAGATGACTCGAAGGATTTAAGCATCAC
1 GCTCGAAAGACTTATAGATGACTCGAAGGATTTAAGCATCAC
*
92508 GCTCGAAAGACTTATAGATGACTTGAAGGATTTAAGCATCAC
1 GCTCGAAAGACTTATAGATGACTCGAAGGATTTAAGCATCAC
* * *
92550 GCTCGAAAGACTTATTGATGGCTCAAAGGA
1 GCTCGAAAGACTTATAGATGACTCGAAGGA
92580 CTTACTCATC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.25
Consensus pattern (42 bp):
GCTCGAAAGACTTATAGATGACTCGAAGGATTTAAGCATCAC
Found at i:92853 original size:53 final size:55
Alignment explanation
Indices: 92780--92937 Score: 149
Period size: 54 Copynumber: 2.9 Consensus size: 55
92770 TGAAAACACG
* * * * * * *
92780 TTTAAAAAATATCAAGAAACTTCTGAAAATAAGAGTTAGTTTCTTT-CAAGCTCA
1 TTTAAAAATTGTCAAGAAACTTCTAAAAAGAAGACTTAGTTTCTTTAAAAGATCA
* *
92834 TTTGAAAATTGTCAA-AAACTTCTAAAAAGCAGACTTAGTTTCTTTAAAAGATCA
1 TTTAAAAATTGTCAAGAAACTTCTAAAAAGAAGACTTAGTTTCTTTAAAAGATCA
** * * *** *
92888 TTTAAAAATAATCAAGAAAGTTCCAAAAATCGGACTTATTTTCTTTAAAA
1 TTTAAAAATTGTCAAGAAACTTCTAAAAAGAAGACTTAGTTTCTTTAAAA
92938 AAAAACATTG
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
53 26 0.31
54 30 0.35
55 29 0.34
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.34
Consensus pattern (55 bp):
TTTAAAAATTGTCAAGAAACTTCTAAAAAGAAGACTTAGTTTCTTTAAAAGATCA
Found at i:94259 original size:28 final size:27
Alignment explanation
Indices: 94228--94304 Score: 109
Period size: 28 Copynumber: 2.7 Consensus size: 27
94218 TCAGGATGTC
*
94228 TTGGGAATGCAATGTGTTTCAGGTTAAT
1 TTGGGAA-GTAATGTGTTTCAGGTTAAT
94256 TTGGGGAAGTAATGTGTTTCAGGTTAAT
1 TT-GGGAAGTAATGTGTTTCAGGTTAAT
*
94284 TTGGGGAGGTAATGTGTTTCA
1 TT-GGGAAGTAATGTGTTTCA
94305 TGTTGGCTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
28 41 0.89
29 5 0.11
ACGTcount: A:0.23, C:0.05, G:0.32, T:0.39
Consensus pattern (27 bp):
TTGGGAAGTAATGTGTTTCAGGTTAAT
Found at i:94937 original size:9 final size:9
Alignment explanation
Indices: 94923--95046 Score: 102
Period size: 9 Copynumber: 14.1 Consensus size: 9
94913 GTCTATTTTC
94923 TTCTTCTTT
1 TTCTTCTTT
94932 TTCTTCTTT
1 TTCTTCTTT
94941 TTCTT-TTT
1 TTCTTCTTT
*
94949 CTCTTCTTTT
1 TTCTTC-TTT
94959 TCTCTTCTTT
1 T-TCTTCTTT
94969 TTCTTC-TT
1 TTCTTCTTT
94977 TT-TTCTCTT
1 TTCTTCT-TT
94986 TT-TTCTCTT
1 TTCTTCT-TT
94995 TTC-TC-TT
1 TTCTTCTTT
95002 TT-TTCTTT
1 TTCTTCTTT
*
95010 TTCCTCTTT
1 TTCTTCTTT
*
95019 TAC-TCTTT
1 TTCTTCTTT
*
95027 TTCCTCTTT
1 TTCTTCTTT
*
95036 CTCTTTCTTT
1 TTC-TTCTTT
95046 T
1 T
95047 CCTTTCATTC
Statistics
Matches: 96, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
7 9 0.09
8 22 0.23
9 48 0.50
10 12 0.12
11 5 0.05
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.74
Consensus pattern (9 bp):
TTCTTCTTT
Found at i:94980 original size:32 final size:31
Alignment explanation
Indices: 94932--95019 Score: 108
Period size: 32 Copynumber: 2.8 Consensus size: 31
94922 CTTCTTCTTT
94932 TTCTTCTTTTTC-TTTTTCTCTTCTTTT-TCTC
1 TTCTT-TTTTTCTTTTTTCTCTT-TTTTCTCTC
*
94963 TTCTTTTTCTTCTTTTTTCTCTTTTTTCTCTT
1 TTCTTTTT-TTCTTTTTTCTCTTTTTTCTCTC
*
94995 TTCTCTTTTTTCTTTTTCCTCTTTT
1 TTCT-TTTTTTCTTTTTTCTCTTTT
95020 ACTCTTTTTC
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
30 3 0.06
31 12 0.24
32 32 0.63
33 4 0.08
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (31 bp):
TTCTTTTTTTCTTTTTTCTCTTTTTTCTCTC
Found at i:95029 original size:32 final size:29
Alignment explanation
Indices: 94926--95047 Score: 67
Period size: 31 Copynumber: 4.1 Consensus size: 29
94916 TATTTTCTTC
* *
94926 TTCTTTTTCTTCTTTTTCTTTTTC---TC
1 TTCTTTTTCCTCTTTTTCTTTTTCTTTTT
*
94952 TTCTTTTT-CTCTTCTTT-TTCTTCTTTTT
1 TTCTTTTTCCTCTT-TTTCTTTTTCTTTTT
*
94980 TCTCTTTTTTCTCTTTTCTCTTTTT-TCTTTT
1 T-TCTTTTTCCTCTTTT-TCTTTTTCT-TTTT
* *
95011 TCCTCTTTTACTCTTTTTCCTCTTTCTCTTTCTT
1 TTCT-TTTTCCTCTTTTT-CT-TTT-TCTTT-TT
95045 TTC
1 TTC
95048 CTTTCATTCT
Statistics
Matches: 74, Mismatches: 7, Indels: 22
0.72 0.07 0.21
Matches are distributed among these distances:
25 9 0.12
26 11 0.15
28 2 0.03
29 9 0.12
30 10 0.14
31 22 0.30
32 3 0.04
33 3 0.04
34 5 0.07
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.74
Consensus pattern (29 bp):
TTCTTTTTCCTCTTTTTCTTTTTCTTTTT
Found at i:96475 original size:20 final size:21
Alignment explanation
Indices: 96413--96475 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 21
96403 TATAGATGCT
* *
96413 AATGCAAATATGCACATGC-A
1 AATGCAAAGATGCAAATGCAA
** *
96433 AATGCAAAGATGGGAATGAAA
1 AATGCAAAGATGCAAATGCAA
*
96454 AATGCAAA-ATGTAAATGCAA
1 AATGCAAAGATGCAAATGCAA
96474 AA
1 AA
96476 AAGGAATTGA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
20 25 0.74
21 9 0.26
ACGTcount: A:0.52, C:0.11, G:0.19, T:0.17
Consensus pattern (21 bp):
AATGCAAAGATGCAAATGCAA
Found at i:96475 original size:21 final size:21
Alignment explanation
Indices: 96432--96476 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
96422 ATGCACATGC
*
96432 AAATGCAAAGATGGGAATGAA
1 AAATGCAAAGATGGAAATGAA
*
96453 AAATGCAAA-ATGTAAATGCAA
1 AAATGCAAAGATGGAAATG-AA
96474 AAA
1 AAA
96477 AGGAATTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.58, C:0.07, G:0.20, T:0.16
Consensus pattern (21 bp):
AAATGCAAAGATGGAAATGAA
Found at i:101763 original size:44 final size:44
Alignment explanation
Indices: 101715--101960 Score: 286
Period size: 44 Copynumber: 5.6 Consensus size: 44
101705 GGAGTCAGCA
101715 GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACG
1 GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACG
* * **
101759 GTAACGGTAAGGACTTACACTTGCACGTAGCAGAGGAGCCTGTG
1 GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACG
* * *
101803 GTAACGATAAGGACTTA-ACCTTGA-ACGTAACAGAGGAGCCTACG
1 GTAACGGTAAGGACTTACA-CTT-ACACATAGCAGAGGAGCCTACG
* * * *
101847 GTAATGGTAAAGACTTACCCTTGA-ACATAGAAGAGGAGCCTACG
1 GTAACGGTAAGGACTTACACTT-ACACATAGCAGAGGAGCCTACG
* * *
101891 GTAACGGTAAGGACTTACCCTTGCACATAGTAGA--AGCCTACG
1 GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACG
* *
101933 GTAACGGTAAGGACTTACCCTTGCACAT
1 GTAACGGTAAGGACTTACACTTACACAT
101961 TGCCATCTTG
Statistics
Matches: 178, Mismatches: 20, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
42 36 0.20
43 1 0.01
44 141 0.79
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.20
Consensus pattern (44 bp):
GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACG
Found at i:101807 original size:88 final size:88
Alignment explanation
Indices: 101715--101960 Score: 320
Period size: 88 Copynumber: 2.8 Consensus size: 88
101705 GGAGTCAGCA
*
101715 GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACGGTAACGGTAAGGACTTACACT
1 GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACGGTAACGGTAAGGACTTACCCT
* * **
101780 TGCACGTAGCAGAGGAGCCTGTG
66 TGCACATAGAAGAGGAGCCTACG
* * * * *
101803 GTAACGATAAGGACTTA-ACCTTGA-ACGTAACAGAGGAGCCTACGGTAATGGTAAAGACTTACC
1 GTAACGGTAAGGACTTACA-CTT-ACACATAGCAGAGGAGCCTACGGTAACGGTAAGGACTTACC
*
101866 CTTGAACATAGAAGAGGAGCCTACG
64 CTTGCACATAGAAGAGGAGCCTACG
* * *
101891 GTAACGGTAAGGACTTACCCTTGCACATAGTAGA--AGCCTACGGTAACGGTAAGGACTTACCCT
1 GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACGGTAACGGTAAGGACTTACCCT
101954 TGCACAT
66 TGCACAT
101961 TGCCATCTTG
Statistics
Matches: 134, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
86 33 0.25
87 1 0.01
88 99 0.74
89 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.20
Consensus pattern (88 bp):
GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACGGTAACGGTAAGGACTTACCCT
TGCACATAGAAGAGGAGCCTACG
Found at i:101875 original size:132 final size:130
Alignment explanation
Indices: 101715--101955 Score: 349
Period size: 132 Copynumber: 1.8 Consensus size: 130
101705 GGAGTCAGCA
* *
101715 GTAACGGTAAGGACTTACACTTACACATAGCAGAGGAGCCTACGGTAACGGTAAGGACTTACACT
1 GTAACGGTAAAGACTTACACTTACACATAGAAGAGGAGCCTACGGTAACGGTAAGGACTTACACT
* **
101780 TGCACGTAGCAGAGGAGCCTGTGGTAACGATAAGGACTTAACCTTGAACGTAACAGAGGAGCCTA
66 TGCACATAGCAGA--AGCCTACGGTAACGATAAGGACTTAACCTTGAACGTAACAGAGGAGCCTA
101845 CG
129 CG
* * *
101847 GTAATGGTAAAGACTTACCCTTGA-ACATAGAAGAGGAGCCTACGGTAACGGTAAGGACTTACCC
1 GTAACGGTAAAGACTTACACTT-ACACATAGAAGAGGAGCCTACGGTAACGGTAAGGACTTACAC
* * *
101911 TTGCACATAGTAGAAGCCTACGGTAACGGTAAGGACTTACCCTTG
65 TTGCACATAGCAGAAGCCTACGGTAACGATAAGGACTTAACCTTG
101956 CACATTGCCA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
130 27 0.28
132 69 0.71
133 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.20
Consensus pattern (130 bp):
GTAACGGTAAAGACTTACACTTACACATAGAAGAGGAGCCTACGGTAACGGTAAGGACTTACACT
TGCACATAGCAGAAGCCTACGGTAACGATAAGGACTTAACCTTGAACGTAACAGAGGAGCCTACG
Found at i:103677 original size:50 final size:50
Alignment explanation
Indices: 103622--103725 Score: 131
Period size: 50 Copynumber: 2.1 Consensus size: 50
103612 ATTAAGTGGT
* ** *
103622 TTGATTAATTAAATTGAAACATCAAT-AGTCAAAATGAAA-TTGAGTAATAA
1 TTGATTAACTAAATCAAAACATCAATGA-TCAAAAT-AAAGATGAGTAATAA
*
103672 TTGATTGACTAAATCAAAACATCAATGATCAAAATAAAGATGAGTAATAA
1 TTGATTAACTAAATCAAAACATCAATGATCAAAATAAAGATGAGTAATAA
103722 TTGA
1 TTGA
103726 ATGGTCAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 3 0.06
50 43 0.91
51 1 0.02
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (50 bp):
TTGATTAACTAAATCAAAACATCAATGATCAAAATAAAGATGAGTAATAA
Found at i:105895 original size:10 final size:9
Alignment explanation
Indices: 105871--105941 Score: 72
Period size: 9 Copynumber: 7.6 Consensus size: 9
105861 GAAGAGATAT
*
105871 AGAAAAAAC
1 AGAAAAAAA
* *
105880 ATAAAAAAT
1 AGAAAAAAA
105889 AGAAAAAAA
1 AGAAAAAAA
105898 TAG-AAAAAA
1 -AGAAAAAAA
105907 AGAAAAAAA
1 AGAAAAAAA
105916 AGGAAAAAAA
1 A-GAAAAAAA
105926 GAGAAAGAAAA
1 -AGAAA-AAAA
105937 AGAAA
1 AGAAA
105942 GAAGGAAAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
8 2 0.04
9 27 0.51
10 19 0.36
11 5 0.09
ACGTcount: A:0.80, C:0.01, G:0.14, T:0.04
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:105901 original size:28 final size:28
Alignment explanation
Indices: 105869--105966 Score: 94
Period size: 28 Copynumber: 3.5 Consensus size: 28
105859 AAGAAGAGAT
* *
105869 ATAGAAAAAACATAAAAAATA-GAAAAAA
1 ATAGAAAAAA-AGAAAAAAAAGGAAAAAA
105897 ATAGAAAAAAAGAAAAAAAAGGAAAAAA
1 ATAGAAAAAAAGAAAAAAAAGGAAAAAA
* * * *
105925 AGAGAAAGAAAA-AGAAAGAAGGAAAAGA
1 ATAGAAA-AAAAGAAAAAAAAGGAAAAAA
*
105953 A-AGAAAGAAAGAAA
1 ATAGAAAAAAAGAAA
105967 GAAGAAATAA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 3 0.05
27 15 0.25
28 37 0.63
29 4 0.07
ACGTcount: A:0.78, C:0.01, G:0.17, T:0.04
Consensus pattern (28 bp):
ATAGAAAAAAAGAAAAAAAAGGAAAAAA
Found at i:105924 original size:38 final size:38
Alignment explanation
Indices: 105882--105973 Score: 98
Period size: 38 Copynumber: 2.4 Consensus size: 38
105872 GAAAAAACAT
*
105882 AAAAAATAGAAA-AAAATAGAAAAAAAGAAAAAAAAGGA
1 AAAAAAGAGAAAGAAAA-AGAAAAAAAGAAAAAAAAGGA
* * *
105920 AAAAAAGAGAAAGAAAAAGAAAGAAGGAAAAGAAA-GA
1 AAAAAAGAGAAAGAAAAAGAAAAAAAGAAAAAAAAGGA
* *
105957 AAGAAAGAAAGAAGAAA
1 AAAAAAGAGA-AAGAAA
105974 TAAAATTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
37 10 0.22
38 32 0.70
39 4 0.09
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (38 bp):
AAAAAAGAGAAAGAAAAAGAAAAAAAGAAAAAAAAGGA
Found at i:105934 original size:4 final size:4
Alignment explanation
Indices: 105927--105973 Score: 55
Period size: 4 Copynumber: 12.2 Consensus size: 4
105917 GGAAAAAAAG
*
105927 AGAA AG-A A-AA AGAA AGAA GGAAA AGAA AGAA AGAA AGAA AG-A AGAA
1 AGAA AGAA AGAA AGAA AGAA AG-AA AGAA AGAA AGAA AGAA AGAA AGAA
105973 A
1 A
105974 TAAAATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 7 0.19
4 27 0.73
5 3 0.08
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:105951 original size:13 final size:13
Alignment explanation
Indices: 105915--105970 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
105905 AAAGAAAAAA
*
105915 AAGGAAAAAAAGAG
1 AAGGAAAAGAA-AG
*
105929 AAAGAAAAAGAAAG
1 -AAGGAAAAGAAAG
105943 AAGGAAAAGAAAG
1 AAGGAAAAGAAAG
*
105956 AAAG-AAAGAAAG
1 AAGGAAAAGAAAG
105968 AAG
1 AAG
105971 AAATAAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
12 10 0.28
13 15 0.42
14 2 0.06
15 9 0.25
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (13 bp):
AAGGAAAAGAAAG
Found at i:105963 original size:25 final size:25
Alignment explanation
Indices: 105899--105970 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 25
105889 AGAAAAAAAT
*
105899 AGAAAAAAAGAAA-AAA-AAGGAAA
1 AGAAAGAAAGAAAGAAAGAAGGAAA
*
105922 AAAAGAGAAAGAAAAAGAAAGAAGGAAA
1 AGAA-AGAAAG--AAAGAAAGAAGGAAA
105950 AGAAAGAAAGAAAGAAAGAAG
1 AGAAAGAAAGAAAGAAAGAAG
105971 AAATAAAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
23 3 0.07
24 5 0.12
25 11 0.27
26 3 0.07
27 9 0.22
28 10 0.24
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (25 bp):
AGAAAGAAAGAAAGAAAGAAGGAAA
Found at i:107232 original size:57 final size:53
Alignment explanation
Indices: 107110--107251 Score: 155
Period size: 57 Copynumber: 2.6 Consensus size: 53
107100 TAAAAATAAG
* * *
107110 AAGCTAAGCCTAATTTTTAGGGTTTCTTGATG-TTTTCAAATGAGTTTTTAAA
1 AAGCTAAGCCTAATTTTTAGGGTTTCTTAATGATTTTCAAATGAATTTTCAAA
* *
107162 AA-CTAAGCTTAATTTTCAGGGATTTCTTAATGATTATCTCCAAA-GAATTTTCAAGA
1 AAGCTAAGCCTAATTTTTAGGG-TTTCTTAATGATT-T-T-CAAATGAATTTTCAA-A
*
107218 AAGCTAAGCCTAATTTTTAGGGGTTCCTTAATGA
1 AAGCTAAGCCTAATTTTTA-GGGTTTCTTAATGA
107252 CAACTAAGAA
Statistics
Matches: 74, Mismatches: 8, Indels: 11
0.80 0.09 0.12
Matches are distributed among these distances:
51 17 0.23
52 11 0.15
53 2 0.03
54 1 0.01
55 9 0.12
56 7 0.09
57 24 0.32
58 3 0.04
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (53 bp):
AAGCTAAGCCTAATTTTTAGGGTTTCTTAATGATTTTCAAATGAATTTTCAAA
Found at i:107628 original size:42 final size:42
Alignment explanation
Indices: 107563--107656 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
107553 AAGGGTTTTT
* * *
107563 TGATGAGTAATTCCTTCAAGCCA-TCAGTAAGTCTTTCGAGCA
1 TGATGAGTAAGTCATTCAAGCCATTCA-TAAGTCTTTCGACCA
* *
107605 TGATGAGTAAGTCATTCAGGCCATTTATAAGTCTTTCGACCA
1 TGATGAGTAAGTCATTCAAGCCATTCATAAGTCTTTCGACCA
*
107647 AGATGA-TAAG
1 TGATGAGTAAG
107657 ACCTTCGGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 4 0.09
42 39 0.87
43 2 0.04
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (42 bp):
TGATGAGTAAGTCATTCAAGCCATTCATAAGTCTTTCGACCA
Found at i:107637 original size:275 final size:275
Alignment explanation
Indices: 107138--107692 Score: 776
Period size: 275 Copynumber: 2.0 Consensus size: 275
107128 AGGGTTTCTT
*
107138 GATGTTTTCAAATGAGTTTTTAAAAACTAAGCTTAATTTTCAGGGATTTCTTAATGATTATCTCC
1 GATGTTCTCAAATGAGTTTTTAAAAACTAAGCTTAATTTTCAGGGATTTCTTAATGATTATCTCC
* * *
107203 AAAGAATTTTCAAGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTAATGACAACTAAGAAACTAAG
66 AAAGAATTTTAAAGAAAGCTAAGACTAATTTTTAGGGGTTCCTT-AGGACAACTAAGAAACTAAG
* ** * *
107268 CTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCATTCGGGCCATCAGTTAGTCTTTTGAGCATGA
130 CTTGACTTTCAAGGGTTTCTTGATGAGTAAGTCATTCAAGCCATCAGTAAGTCTTTCGAGCATGA
** * * *
107333 TGCTTAAATCCTCCAGGTCATCTATAAGTCTTTCGAACAAGATGATAAGTCCTTCGGGCCATCCA
195 TGAGTAAATCATCCAGGCCATCTATAAGTCTTTCGAACAAGATGATAAGACCTTCGGGCCATCCA
*
107398 TAAGACCTTCGGGCAG
260 TAAGACCTTCGGGCAC
* * * *
107414 GATGTTCTCAAATGAGTTTTTAGAAACTAAG-TCTGATTTTCAGAGG-TTTTTTTATGATTATCT
1 GATGTTCTCAAATGAGTTTTTAAAAACTAAGCT-TAATTTTCAG-GGATTTCTTAATGATTATCT
* *
107477 CCAAAGAGTTTTTAAAAGGAAGCTAAGACTAATTTTTAGGGGTTCCTT-GGA-AACTAAGAAACT
64 CCAAAGA-ATTTT-AAAGAAAGCTAAGACTAATTTTTAGGGGTTCCTTAGGACAACTAAGAAACT
* * *
107540 AAGCTTGACTTTCAAGGGTTTTTTGATGAGTAATTCCTTCAAGCCATCAGTAAGTCTTTCGAGCA
127 AAGCTTGACTTTCAAGGGTTTCTTGATGAGTAAGTCATTCAAGCCATCAGTAAGTCTTTCGAGCA
* * * * *
107605 TGATGAGTAAGTCATTCAGGCCATTTATAAGTCTTTCGACCAAGATGATAAGACCTTCGGGTCAT
192 TGATGAGTAAATCATCCAGGCCATCTATAAGTCTTTCGAACAAGATGATAAGACCTTCGGGCCAT
107670 CCATAAGACCTTCGGGCAC
257 CCATAAGACCTTCGGGCAC
107689 GATG
1 GATG
107693 ATTTCAACAT
Statistics
Matches: 246, Mismatches: 29, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
275 147 0.60
276 62 0.25
277 6 0.02
278 31 0.13
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (275 bp):
GATGTTCTCAAATGAGTTTTTAAAAACTAAGCTTAATTTTCAGGGATTTCTTAATGATTATCTCC
AAAGAATTTTAAAGAAAGCTAAGACTAATTTTTAGGGGTTCCTTAGGACAACTAAGAAACTAAGC
TTGACTTTCAAGGGTTTCTTGATGAGTAAGTCATTCAAGCCATCAGTAAGTCTTTCGAGCATGAT
GAGTAAATCATCCAGGCCATCTATAAGTCTTTCGAACAAGATGATAAGACCTTCGGGCCATCCAT
AAGACCTTCGGGCAC
Found at i:111306 original size:21 final size:23
Alignment explanation
Indices: 111257--111314 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
111247 ATCATTTAGG
111257 ATTAATTTTTGTAA-ATTGTTTTC
1 ATTAATTTTT-TAATATTGTTTTC
111280 A-T-ATTTTTTAATATT-TTTT-
1 ATTAATTTTTTAATATTGTTTTC
*
111299 ATTAATTTTTTCATAT
1 ATTAATTTTTTAATAT
111315 AATTTGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
19 1 0.03
20 8 0.26
21 20 0.65
22 1 0.03
23 1 0.03
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (23 bp):
ATTAATTTTTTAATATTGTTTTC
Found at i:113119 original size:32 final size:32
Alignment explanation
Indices: 113054--113124 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
113044 ATTACAGTTG
* *
113054 ATATTTTTTTAATTATTTTAAATTTAAATTTT
1 ATATATTTTTAATTATGTTAAATTTAAATTTT
*
113086 ATTTATTTTTAATTA-GTTAAACTTTATAA-TTT
1 ATATATTTTTAATTATGTTAAA-TTTA-AATTTT
113118 ATATATT
1 ATATATT
113125 AAGAAGTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
31 5 0.15
32 26 0.79
33 2 0.06
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (32 bp):
ATATATTTTTAATTATGTTAAATTTAAATTTT
Found at i:114145 original size:18 final size:18
Alignment explanation
Indices: 114122--114160 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
114112 GAAATGTAAA
*
114122 ATTACCAGTGAGAATATG
1 ATTACCAGTGAGAATAAG
* *
114140 ATTACCGGTGGGAATAAG
1 ATTACCAGTGAGAATAAG
114158 ATT
1 ATT
114161 TCTAGGAATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (18 bp):
ATTACCAGTGAGAATAAG
Found at i:127199 original size:13 final size:13
Alignment explanation
Indices: 127167--127207 Score: 64
Period size: 13 Copynumber: 3.0 Consensus size: 13
127157 GCAGGGGAAG
127167 AGTGAAAAGTTAA
1 AGTGAAAAGTTAA
127180 AGTGTGAAAAGTTAA
1 A--GTGAAAAGTTAA
127195 AGTGAAAAGTTAA
1 AGTGAAAAGTTAA
127208 GAAGAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 13 0.50
15 13 0.50
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (13 bp):
AGTGAAAAGTTAA
Found at i:130612 original size:17 final size:17
Alignment explanation
Indices: 130592--130626 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
130582 ACTCATTAAT
130592 ATTTTAAAACCC-AATAA
1 ATTTT-AAACCCAAATAA
130609 ATTTTAAACCCAAATAA
1 ATTTTAAACCCAAATAA
130626 A
1 A
130627 AAAAATATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (17 bp):
ATTTTAAACCCAAATAA
Found at i:130619 original size:16 final size:16
Alignment explanation
Indices: 130578--130626 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
130568 AATTTTAACC
* *
130578 TTAAACTCATTAATATT
1 TTAAACCCAATAA-ATT
130595 TTAAAACCCAATAAATT
1 TT-AAACCCAATAAATT
130612 TTAAACCCAAATAAA
1 TTAAACCC-AATAAA
130627 AAAAATATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 6 0.21
17 13 0.46
18 9 0.32
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (16 bp):
TTAAACCCAATAAATT
Found at i:132037 original size:44 final size:43
Alignment explanation
Indices: 131900--132384 Score: 248
Period size: 44 Copynumber: 10.7 Consensus size: 43
131890 ATTTTATGAA
* * *
131900 ATTGAAAAAAGTTAGAGGCCTTACTTATAAAGGTAGAAATTGAG
1 ATTGAAAAAACTTAGA-GCCTCAATTATAAAGGTAGAAATTGAG
* * * * *
131944 ATTGAAAAAAAAAACTTAGGGTCTCAATTATAAAAGTA-TAATCGAG
1 ATTG----AAAAAACTTAGAGCCTCAATTATAAAGGTAGAAATTGAG
* *
131990 ATTGAAAAATCTTATGAACCTCAATTATAAAGGTAGAAATTGAG
1 ATTGAAAAAACTTA-GAGCCTCAATTATAAAGGTAGAAATTGAG
* ** ** * *
132034 ATTGAAAAAACTTAAGGGTTTCAATTATAAAATTAAAAAAGTGAG
1 ATTGAAAAAACTT-AGAGCCTCAATTATAAAGGT-AGAAATTGAG
* * *
132079 ATT-AAAAAAATTAGGAGCTTCAATTATAAAGGTAAAAATTGAG
1 ATTGAAAAAACTTA-GAGCCTCAATTATAAAGGTAGAAATTGAG
* *
132122 ATTGAAAAAACTTAGAGGCCTCAATTGTAAAGGTAGAAAACGTAGAAAGTGAT
1 ATTGAAAAAACTTAGA-GCCTCAATTATAAAGGTAG-AAA--T------TGAG
* * *
132175 ATTGAAAAAACTTAAGAGCATCAATTATAAAGTTAAAAAGTTG-G
1 ATTGAAAAAACTT-AGAGCCTCAATTATAAAGGTAGAAA-TTGAG
* *
132219 ATT-AAAAAA-TTAGAGGCTCAATTATAAAGGTGGAAATGGTAGAAAGTGAG
1 ATTGAAAAAACTTAGAGCCTCAA-T-T--A--T--AAA-GGTAGAAATTGAG
* * * * * **
132269 ATTAAAAAAACTTAAAGGCCTTAATTATAAAGTTAAAAAGCGAG
1 ATTGAAAAAACTTAGA-GCCTCAATTATAAAGGTAGAAATTGAG
* * ** *
132313 ATT-AAAAAA-TTAGGTGCCTCAATTATAAAGGTAAAAAAAGGG
1 ATTGAAAAAACTTA-GAGCCTCAATTATAAAGGTAGAAATTGAG
* *
132355 ATTGAGAAAA-TTAGAGACTTCAATTATAAA
1 ATTGAAAAAACTTAGAG-CCTCAATTATAAA
132385 TATAAAAGGT
Statistics
Matches: 343, Mismatches: 61, Indels: 75
0.72 0.13 0.16
Matches are distributed among these distances:
41 8 0.02
42 42 0.12
43 64 0.19
44 99 0.29
45 21 0.06
46 10 0.03
47 17 0.05
48 10 0.03
49 6 0.02
50 10 0.03
51 9 0.03
52 8 0.02
53 36 0.10
54 3 0.01
ACGTcount: A:0.48, C:0.07, G:0.18, T:0.26
Consensus pattern (43 bp):
ATTGAAAAAACTTAGAGCCTCAATTATAAAGGTAGAAATTGAG
Found at i:132180 original size:53 final size:52
Alignment explanation
Indices: 132118--132308 Score: 174
Period size: 53 Copynumber: 3.9 Consensus size: 52
132108 AGGTAAAAAT
*
132118 TGAGATTGAAAAAACTTAGAGGCCTCAATTGTAAAGGTAGAAAACGTAGAAAG
1 TGAGATTGAAAAAACTTAGAGGCCTCAATTATAAAGGTAGAAAA-GTAGAAAG
* * *
132171 TGATATTGAAAAAACTTA-AGAGCATCAATTATAAAGTTA-AAAAGT------
1 TGAGATTGAAAAAACTTAGAG-GCCTCAATTATAAAGGTAGAAAAGTAGAAAG
* *
132216 TG-GATT-AAAAAA-TTAGAGG-CTCAATTATAAAGGTGGAAATGGTAGAAAG
1 TGAGATTGAAAAAACTTAGAGGCCTCAATTATAAAGGTAGAAA-AGTAGAAAG
* * * *
132265 TGAGATTAAAAAAACTTAAAGGCCTTAATTATAAAGTTA-AAAAG
1 TGAGATTGAAAAAACTTAGAGGCCTCAATTATAAAGGTAGAAAAG
132309 CGAGATTAAA
Statistics
Matches: 110, Mismatches: 14, Indels: 30
0.71 0.09 0.19
Matches are distributed among these distances:
41 13 0.12
42 7 0.06
43 10 0.09
44 3 0.03
45 2 0.02
49 2 0.02
50 4 0.04
51 9 0.08
52 15 0.14
53 45 0.41
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.25
Consensus pattern (52 bp):
TGAGATTGAAAAAACTTAGAGGCCTCAATTATAAAGGTAGAAAAGTAGAAAG
Found at i:132277 original size:94 final size:96
Alignment explanation
Indices: 132071--132350 Score: 358
Period size: 94 Copynumber: 2.9 Consensus size: 96
132061 TAAAATTAAA
* * *
132071 AAAGTGAGATTAAAAAAA-TTAGGAGCTTCAATTATAAAGGTAAAAA-TTGAGATTGAAAAAACT
1 AAAGTGAGATTAAAAAAACTTAAGAGCATCAATTATAAAGTTAAAAAGTTGAGATT-AAAAAA-T
*
132134 TAGAGGCCTCAATTGTAAAGGTAGAAAACGTAG
64 TAGAGGCCTCAATTATAAAGGTAGAAAACGTAG
* *
132167 AAAGTGATATTGAAAAAACTTAAGAGCATCAATTATAAAGTTAAAAAGTTG-GATTAAAAAATTA
1 AAAGTGAGATTAAAAAAACTTAAGAGCATCAATTATAAAGTTAAAAAGTTGAGATTAAAAAATTA
* **
132231 GAGG-CTCAATTATAAAGGTGGAAATGGTAG
66 GAGGCCTCAATTATAAAGGTAGAAAACGTAG
* * *
132261 AAAGTGAGATTAAAAAAACTTAA-AGGCCTTAATTATAAAGTTAAAAAG-CGAGATTAAAAAATT
1 AAAGTGAGATTAAAAAAACTTAAGA-GCATCAATTATAAAGTTAAAAAGTTGAGATTAAAAAATT
*
132324 AG-GTGCCTCAATTATAAAGGTAAAAAA
65 AGAG-GCCTCAATTATAAAGGTAGAAAA
132351 AGGGATTGAG
Statistics
Matches: 161, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
93 3 0.02
94 79 0.49
95 25 0.16
96 22 0.14
97 29 0.18
98 3 0.02
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.25
Consensus pattern (96 bp):
AAAGTGAGATTAAAAAAACTTAAGAGCATCAATTATAAAGTTAAAAAGTTGAGATTAAAAAATTA
GAGGCCTCAATTATAAAGGTAGAAAACGTAG
Found at i:132410 original size:44 final size:43
Alignment explanation
Indices: 132329--132443 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
132319 AAATTAGGTG
* * * *
132329 CCTCAATTATAAAGGTAAAAAA-AGGGATTG-AGAAAATTAGAGA
1 CCTCAATTATAAAGATAAAAAATA-AGATTGAATAAAATTA-AAA
* * **
132372 CTTCAATTATAAATATAAAAGGTAAGATTGAATAAAATTAAAA
1 CCTCAATTATAAAGATAAAAAATAAGATTGAATAAAATTAAAA
*
132415 CCTCATTTATAAAGATAAAAAATAAGATT
1 CCTCAATTATAAAGATAAAAAATAAGATT
132444 TAAAAGATTA
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
43 48 0.84
44 9 0.16
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (43 bp):
CCTCAATTATAAAGATAAAAAATAAGATTGAATAAAATTAAAA
Found at i:135199 original size:20 final size:21
Alignment explanation
Indices: 135131--135565 Score: 319
Period size: 20 Copynumber: 21.3 Consensus size: 21
135121 GATTCTGACT
* *
135131 ATCGCATTGCGATTT-CATAA
1 ATCGCAATGCGATTTACGTAA
** * *
135151 ATTCGCGTTGCGATTTTCCTAA
1 A-TCGCAATGCGATTTACGTAA
* *
135173 TTCGCAATGCGA-ATACGTAA
1 ATCGCAATGCGATTTACGTAA
135193 ATCGCAATGCGA-TTACGTAA
1 ATCGCAATGCGATTTACGTAA
* * *
135213 ATCGCAATGCGAATTAGGAAA
1 ATCGCAATGCGATTTACGTAA
135234 ATCGCAATGCGA-TTACGTAA
1 ATCGCAATGCGATTTACGTAA
* *
135254 ATTGCATTGCGATTTACGT-A
1 ATCGCAATGCGATTTACGTAA
* * *
135274 ATCGCATTGCGATTTTCCTAA
1 ATCGCAATGCGATTTACGTAA
* * * *
135295 TTTGCACTTCGATTTACGT-A
1 ATCGCAATGCGATTTACGTAA
*
135315 ATCGCATTGCGATTTA-GTAA
1 ATCGCAATGCGATTTACGTAA
* *
135335 ATCGCAACGAGATTCTGAC-T--
1 ATCGCAATGCGATT-T-ACGTAA
* *
135355 ATCGCATTGCGATTT-CCTAA
1 ATCGCAATGCGATTTACGTAA
** * *
135375 ATTCGCGTTGCGATTTTCCTAA
1 A-TCGCAATGCGATTTACGTAA
* *
135397 TTCGCAATGCGA-ATACGTAA
1 ATCGCAATGCGATTTACGTAA
135417 ATCGCAATGCGA-TTACGTAA
1 ATCGCAATGCGATTTACGTAA
* * *
135437 ATCGCAATGCGAATTAGGAAA
1 ATCGCAATGCGATTTACGTAA
*
135458 ATCGCATTGCGATTTACGT-A
1 ATCGCAATGCGATTTACGTAA
*
135478 ATCGCATTGCGATTTACGT-A
1 ATCGCAATGCGATTTACGTAA
* * *
135498 ATCGCATTGCGATTTTCCTAA
1 ATCGCAATGCGATTTACGTAA
* * * *
135519 TTTGCACTTCGATTTACGT-A
1 ATCGCAATGCGATTTACGTAA
*
135539 ATCGCATTGCGATTTA-GTAA
1 ATCGCAATGCGATTTACGTAA
135559 ATCGCAA
1 ATCGCAA
135566 CGAGATTCTG
Statistics
Matches: 335, Mismatches: 63, Indels: 34
0.78 0.15 0.08
Matches are distributed among these distances:
17 1 0.00
18 1 0.00
19 5 0.01
20 199 0.59
21 118 0.35
22 11 0.03
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (21 bp):
ATCGCAATGCGATTTACGTAA
Found at i:135251 original size:61 final size:62
Alignment explanation
Indices: 135174--135564 Score: 284
Period size: 61 Copynumber: 6.4 Consensus size: 62
135164 TTTTCCTAAT
* * *
135174 TCGCAATGCGAATACGTAAATCGCAATGCGA-TTACGTAAATCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGATTACGTAAATCGCATTGCGATTTACGTAAATCGCAATGCGAATTACGAAAA
* * * * ** *
135235 TCGCAATGCGATTACGTAAATTGCATTGCGATTTACGT-AATCGCATTGCGATTTTCCTAAT
1 TCGCAATGCGATTACGTAAATCGCATTGCGATTTACGTAAATCGCAATGCGAATTACGAAAA
* * * **
135296 TTGCACTTCGATTTACGT-AATCGCATTGCGATTTA-GTAAATCGCAA--CGAGATT-CTGACTA
1 TCGCAATGCGA-TTACGTAAATCGCATTGCGATTTACGTAAATCGCAATGCGA-ATTAC-GAAAA
* * * * * * * *
135356 TCGCATTGCGATTTCCTAAATTCGCGTTGCGATTTTCCTAATTCGCAATGCGAA-TACGTAAA
1 TCGCAATGCGATTACGTAAA-TCGCATTGCGATTTACGTAAATCGCAATGCGAATTACGAAAA
* * * * * * *
135418 TCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGCATTGCGATTTACG-TAA
1 TCGCAATGCGATTACGTAAATCGCATTGCGATTTACGTAAATCGCAATGCGAATTACGAAAA
* * * * * * * * *
135479 TCGCATTGCGATTTACGT-AATCGCATTGCGATTTTCCTAATTTGCACTTCGATTTACG-TAA
1 TCGCAATGCGA-TTACGTAAATCGCATTGCGATTTACGTAAATCGCAATGCGAATTACGAAAA
*
135540 TCGCATTGCGATTTA-GTAAATCGCA
1 TCGCAATGCGA-TTACGTAAATCGCA
135565 ACGAGATTCT
Statistics
Matches: 258, Mismatches: 58, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
59 8 0.03
60 16 0.06
61 178 0.69
62 51 0.20
63 2 0.01
64 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (62 bp):
TCGCAATGCGATTACGTAAATCGCATTGCGATTTACGTAAATCGCAATGCGAATTACGAAAA
Found at i:135511 original size:224 final size:224
Alignment explanation
Indices: 135115--135584 Score: 888
Period size: 224 Copynumber: 2.1 Consensus size: 224
135105 TCCAGATTCA
*
135115 CAACGCGATTCTGACTATCGCATTGCGATTTCATAAATTCGCGTTGCGATTTTCCTAATTCGCAA
1 CAACGAGATTCTGACTATCGCATTGCGATTTCATAAATTCGCGTTGCGATTTTCCTAATTCGCAA
135180 TGCGAATACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGCAATGCG
66 TGCGAATACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGCAATGCG
*
135245 ATTACGTAAATTGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTAATTTGCACTTCGATTT
131 ATTACGTAAATCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTAATTTGCACTTCGATTT
135310 ACGTAATCGCATTGCGATTTAGTAAATCG
196 ACGTAATCGCATTGCGATTTAGTAAATCG
*
135339 CAACGAGATTCTGACTATCGCATTGCGATTTCCTAAATTCGCGTTGCGATTTTCCTAATTCGCAA
1 CAACGAGATTCTGACTATCGCATTGCGATTTCATAAATTCGCGTTGCGATTTTCCTAATTCGCAA
*
135404 TGCGAATACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGCATTGCG
66 TGCGAATACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGCAATGCG
135469 ATTTACGT-AATCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTAATTTGCACTTCGATT
131 A-TTACGTAAATCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTAATTTGCACTTCGATT
135533 TACGTAATCGCATTGCGATTTAGTAAATCG
195 TACGTAATCGCATTGCGATTTAGTAAATCG
135563 CAACGAGATTCTGACTATCGCA
1 CAACGAGATTCTGACTATCGCA
135585 ATACTGAATT
Statistics
Matches: 241, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
224 235 0.98
225 6 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (224 bp):
CAACGAGATTCTGACTATCGCATTGCGATTTCATAAATTCGCGTTGCGATTTTCCTAATTCGCAA
TGCGAATACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGCAATGCG
ATTACGTAAATCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTAATTTGCACTTCGATTT
ACGTAATCGCATTGCGATTTAGTAAATCG
Found at i:135543 original size:41 final size:40
Alignment explanation
Indices: 135131--135554 Score: 251
Period size: 41 Copynumber: 10.4 Consensus size: 40
135121 GATTCTGACT
* * * *
135131 ATCGCATTGCGATTT-CATAAATTCGCGTTGCGATTTTCCTA
1 ATCGCATTGCGATTTACCT-AA-TCGCATTGCGATTTACGTA
* * * *
135172 ATTCGCAATGCGA-ATACGTAAATCGCAATGCGA-TTACGTAA
1 A-TCGCATTGCGATTTACCT-AATCGCATTGCGATTTACGT-A
* * *** *
135213 ATCGCAATGCGAATTAGGAAAATCGCAATGCGA-TTACGTAA
1 ATCGCATTGCGATTTA-CCTAATCGCATTGCGATTTACGT-A
* * * *
135254 ATTGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTA
1 ATCGCATTGCGATTTACCTAATCGCATTGCGATTTACGTA
* *
135294 ATTTGCACTT-CGATTTACGTAATCGCATTGCGATTTA-GTAA
1 A-TCGCA-TTGCGATTTACCTAATCGCATTGCGATTTACGT-A
** * *
135335 ATCGCAACGAGATTCTGA-CT-ATCGCATTGCGATTT-CCTAA
1 ATCGCATTGCGATT-T-ACCTAATCGCATTGCGATTTACGT-A
* * * *
135375 ATTCGCGTTGCGATTTTCCTAATTCGCAATGCGA-ATACGTAA
1 A-TCGCATTGCGATTTACCTAA-TCGCATTGCGATTTACGT-A
* * * * * *
135417 ATCGCAATGCGA-TTACGTAAATCGCAATGCGAATTAGGAAA
1 ATCGCATTGCGATTTACCT-AATCGCATTGCGATTTACG-TA
*
135458 ATCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTA
1 ATCGCATTGCGATTTACCTAATCGCATTGCGATTTACGTA
* *
135498 ATCGCATTGCGATTTTCCTAATTTGCACTT-CGATTTACGTA
1 ATCGCATTGCGATTTACCTAA-TCGCA-TTGCGATTTACGTA
135539 ATCGCATTGCGATTTA
1 ATCGCATTGCGATTTA
135555 GTAAATCGCA
Statistics
Matches: 307, Mismatches: 52, Indels: 48
0.75 0.13 0.12
Matches are distributed among these distances:
40 95 0.31
41 171 0.56
42 41 0.13
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (40 bp):
ATCGCATTGCGATTTACCTAATCGCATTGCGATTTACGTA
Found at i:136453 original size:24 final size:24
Alignment explanation
Indices: 136426--136479 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
136416 GTATTCGAAA
136426 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
136450 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
136474 TTTGAT
1 TTTGAT
136480 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:139031 original size:19 final size:20
Alignment explanation
Indices: 138989--139043 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
138979 CAATCATCTT
*
138989 AATGTCTATCGCAACGCGGA
1 AATGACTATCGCAACGCGGA
*
139009 AATGACTATCGCAATGC-GA
1 AATGACTATCGCAACGCGGA
**
139028 AATGAAAATCGCAACG
1 AATGACTATCGCAACG
139044 AGAGAATCGC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (20 bp):
AATGACTATCGCAACGCGGA
Found at i:139063 original size:33 final size:33
Alignment explanation
Indices: 139016--139109 Score: 152
Period size: 33 Copynumber: 2.8 Consensus size: 33
139006 GGAAATGACT
139016 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
139049 ATCGCAATGTGAAATAAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
139082 ATCGTAATACGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
139110 CGAATTTAGT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:139152 original size:19 final size:19
Alignment explanation
Indices: 139109--139154 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
139099 AAATCGCAAC
* *
139109 GCGAATTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCATT
**
139128 ATGATTTTAGTTTCGCATT
1 GCGATTTTAGTTTCGCATT
139147 GCGATTTT
1 GCGATTTT
139155 GTCGTTGCGA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCATT
Found at i:139181 original size:19 final size:19
Alignment explanation
Indices: 139150--139217 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
139140 TCGCATTGCG
139150 ATTTTGTCGTTGCGATTTTC
1 ATTTTG-CGTTGCGATTTTC
139170 ATTTTGCGTTGCGA--TTC
1 ATTTTGCGTTGCGATTTTC
*
139187 --TCT-CGTTGCGATTTTC
1 ATTTTGCGTTGCGATTTTC
* *
139203 ATTTCGCATTGCGAT
1 ATTTTGCGTTGCGAT
139218 AGTCATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
14 8 0.21
15 2 0.05
16 3 0.08
17 3 0.08
18 1 0.03
19 16 0.41
20 6 0.15
ACGTcount: A:0.12, C:0.19, G:0.21, T:0.49
Consensus pattern (19 bp):
ATTTTGCGTTGCGATTTTC
Found at i:139182 original size:33 final size:33
Alignment explanation
Indices: 139130--139217 Score: 124
Period size: 33 Copynumber: 2.7 Consensus size: 33
139120 TTCGCGTTAT
* *
139130 GATTTT-AGTTTCGCATTGCGATTTTGTCGTTGC
1 GATTTTCA-TTTCGCATTGCGATTCTCTCGTTGC
* *
139163 GATTTTCATTTTGCGTTGCGATTCTCTCGTTGC
1 GATTTTCATTTCGCATTGCGATTCTCTCGTTGC
139196 GATTTTCATTTCGCATTGCGAT
1 GATTTTCATTTCGCATTGCGAT
139218 AGTCATTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
33 47 0.98
34 1 0.02
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
GATTTTCATTTCGCATTGCGATTCTCTCGTTGC
Found at i:139343 original size:14 final size:14
Alignment explanation
Indices: 139324--139360 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
139314 CATTAATTAA
139324 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
139338 ACAAATCATCTTTT
1 ACAAATCAACTTTT
139352 ACAAATCAA
1 ACAAATCAA
139361 TTAAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:140587 original size:3 final size:3
Alignment explanation
Indices: 140581--140654 Score: 139
Period size: 3 Copynumber: 24.7 Consensus size: 3
140571 TTTTTATCCA
140581 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
140629 TAT TAT CAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
140655 AATATATATT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:141182 original size:19 final size:19
Alignment explanation
Indices: 141134--141201 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
141124 AGCAGAAAAG
*
141134 AAAAAAAGCAGAGACAGAA
1 AAAAAAAACAGAGACAGAA
** * *
141153 ACTAGAGACAGAGACAGAA
1 AAAAAAAACAGAGACAGAA
*
141172 AAAAAAAACAGAGAAAGGAA
1 AAAAAAAACAGAGACA-GAA
141192 AAAAAAAACA
1 AAAAAAAACA
141202 AATTATACCA
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
19 25 0.66
20 13 0.34
ACGTcount: A:0.69, C:0.10, G:0.19, T:0.01
Consensus pattern (19 bp):
AAAAAAAACAGAGACAGAA
Found at i:141194 original size:20 final size:19
Alignment explanation
Indices: 141160--141201 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
141150 GAAACTAGAG
*
141160 ACAGAGACAGAAAAAAAAA
1 ACAGAGAAAGAAAAAAAAA
141179 ACAGAGAAAGGAAAAAAAAA
1 ACAGAGAAA-GAAAAAAAAA
141199 ACA
1 ACA
141202 AATTATACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.74, C:0.10, G:0.17, T:0.00
Consensus pattern (19 bp):
ACAGAGAAAGAAAAAAAAA
Found at i:142126 original size:20 final size:21
Alignment explanation
Indices: 142089--142129 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
142079 GATATTTTTA
**
142089 TTTTATTATATTGTTAAATAT
1 TTTTATTATATTCATAAATAT
142110 TTTTA-TATATTCATAAATAT
1 TTTTATTATATTCATAAATAT
142130 ACATATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTATTATATTCATAAATAT
Found at i:142940 original size:21 final size:21
Alignment explanation
Indices: 142874--142940 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
142864 GTGAATCGGG
*
142874 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
142894 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
142916 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
142937 CTCT
1 CTCT
142941 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:142959 original size:42 final size:41
Alignment explanation
Indices: 142874--142996 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
142864 GTGAATCGGG
* * * *
142874 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGACAGGGGC
*
142916 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGACAGGGGC
* * * * *
142958 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGACAGG
142997 CGAGTCGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.06
42 57 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.19, G:0.37, T:0.22
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGACAGGGGC
Done.