Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008964.1 Hibiscus syriacus cultivar Beakdansim tig00112305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2156694
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
File 4 of 11
Found at i:457393 original size:6 final size:6
Alignment explanation
Indices: 457378--457419 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
457368 CTTGACCCCC
*
457378 TTTT-T TTTTCT TTTTCT TCTTTTT TTTTC- TTTTCT TTTTCT T
1 TTTTCT TTTTCT TTTTCT T-TTTCT TTTTCT TTTTCT TTTTCT T
457420 CTCTTCAAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 9 0.28
6 18 0.56
7 5 0.16
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTCT
Found at i:457397 original size:9 final size:8
Alignment explanation
Indices: 457380--457421 Score: 50
Period size: 9 Copynumber: 5.1 Consensus size: 8
457370 TGACCCCCTT
457380 TTTTTTTC
1 TTTTTTTC
457388 TTTTTCTTC
1 TTTTT-TTC
457397 TTTTTTT-
1 TTTTTTTC
*
457404 TTCTTTTC
1 TTTTTTTC
457412 TTTTTCTTC
1 TTTTT-TTC
457421 T
1 T
457422 CTTCAAGCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
7 6 0.21
8 11 0.38
9 12 0.41
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTTTC
Found at i:457421 original size:14 final size:14
Alignment explanation
Indices: 457383--457421 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 14
457373 CCCCCTTTTT
457383 TTTTCTTTTTCTTC
1 TTTTCTTTTTCTTC
457397 --TT-TTTTT-TTC
1 TTTTCTTTTTCTTC
457407 TTTTCTTTTTCTTC
1 TTTTCTTTTTCTTC
457421 T
1 T
457422 CTTCAAGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 8
0.72 0.00 0.28
Matches are distributed among these distances:
10 3 0.14
11 5 0.24
12 4 0.19
13 5 0.24
14 4 0.19
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTCTTTTTCTTC
Found at i:464714 original size:15 final size:15
Alignment explanation
Indices: 464691--464722 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
464681 TGAAATGAAT
464691 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
464706 AATGCATGTATGCAA
1 AATGAATGTATGCAA
464721 AA
1 AA
464723 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:470179 original size:17 final size:16
Alignment explanation
Indices: 470157--470188 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
470147 GGGTTTTCTA
470157 ATATTAATAAATAATAT
1 ATATTAAT-AATAATAT
470174 ATATTAATAATAATA
1 ATATTAATAATAATA
470189 ATAATAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATTAATAATAATAT
Found at i:470201 original size:3 final size:3
Alignment explanation
Indices: 470195--470220 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
470185 AATAATAATA
470195 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
470221 AATAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:470528 original size:14 final size:14
Alignment explanation
Indices: 470491--470528 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
470481 TTTTGTTTTA
470491 TTATTTTTTTAAAT
1 TTATTTTTTTAAAT
*
470505 TTAATTTTTTT-ATT
1 TT-ATTTTTTTAAAT
470519 TTATTTTTTT
1 TTATTTTTTT
470529 CTTAACCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 8 0.36
14 6 0.27
15 8 0.36
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTATTTTTTTAAAT
Found at i:470576 original size:38 final size:38
Alignment explanation
Indices: 470534--470622 Score: 103
Period size: 36 Copynumber: 2.4 Consensus size: 38
470524 TTTTTCTTAA
*
470534 CCTTTGATTTATTTAATATTATTTTTA-TCTCATTTTTT-
1 CCTTTGATTTATTT-ATATT-TTTCTATTCTCATTTTTTC
* * *
470572 CCTTTGATTT-TTTTTATTTTTCTATTTTTATTTTTTC
1 CCTTTGATTTATTTATATTTTTCTATTCTCATTTTTTC
470609 CCTTTGATTTATTT
1 CCTTTGATTTATTT
470623 TTTTTAATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
35 5 0.11
36 13 0.30
37 13 0.30
38 13 0.30
ACGTcount: A:0.16, C:0.11, G:0.03, T:0.70
Consensus pattern (38 bp):
CCTTTGATTTATTTATATTTTTCTATTCTCATTTTTTC
Found at i:470669 original size:21 final size:21
Alignment explanation
Indices: 470623--470662 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
470613 TGATTTATTT
470623 TTTTTAATTTTATGTTTTTTA
1 TTTTTAATTTTATGTTTTTTA
*
470644 TTTTTACTTTTATGTTTTT
1 TTTTTAATTTTATGTTTTT
470663 ATGTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.78
Consensus pattern (21 bp):
TTTTTAATTTTATGTTTTTTA
Found at i:470675 original size:21 final size:21
Alignment explanation
Indices: 470579--470682 Score: 63
Period size: 21 Copynumber: 4.8 Consensus size: 21
470569 TTTCCTTTGA
*
470579 TTTTTTTTAT-TTTTCTATTT
1 TTTTTTTTATGTTTTTTATTT
***
470599 TTATTTTTTCCCTTTGATTTATTTT
1 TT-TTTTTTATGTTT--TTTA-TTT
470624 TTTTAATTTTATGTTTTTTATTT
1 TTTT--TTTTATGTTTTTTATTT
**
470647 TTACTTTTATG-TTTTTATGTT
1 TTTTTTTTATGTTTTTTAT-TT
470668 TTTTTTTT-T-TTTTTT
1 TTTTTTTTATGTTTTTT
470683 CCCTTTGATT
Statistics
Matches: 65, Mismatches: 10, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
20 15 0.23
21 21 0.32
22 3 0.05
23 5 0.08
24 9 0.14
25 5 0.08
26 7 0.11
ACGTcount: A:0.12, C:0.05, G:0.04, T:0.80
Consensus pattern (21 bp):
TTTTTTTTATGTTTTTTATTT
Found at i:470710 original size:75 final size:75
Alignment explanation
Indices: 470582--470723 Score: 175
Period size: 75 Copynumber: 1.9 Consensus size: 75
470572 CCTTTGATTT
** * *
470582 TTTTTATTTTTCTATTTTTATTTTTTCCCTTTGATTTATTTTTTTTAATTTTATGTTTTTTATTT
1 TTTTTATTTTTCTATTTTTATTTTTTCCCTTTGATTTATTTCATTTAATTTTAT-TATTTTATGT
470647 TTACTTTTATG
65 TTACTTTTATG
*
470658 TTTTTATGTTTT-T-TTTTTTTTTTTTCCCTTTGATTTATTTAACATTT-A-TTTATTATTTTAT
1 TTTTTAT-TTTTCTATTTTTATTTTTTCCCTTTGATTTATTT--CATTTAATTTTATTATTTTAT
470719 GTTTA
63 GTTTA
470724 ACATTTTCGA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
74 11 0.19
75 31 0.53
76 9 0.16
77 7 0.12
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.74
Consensus pattern (75 bp):
TTTTTATTTTTCTATTTTTATTTTTTCCCTTTGATTTATTTCATTTAATTTTATTATTTTATGTT
TACTTTTATG
Found at i:470802 original size:6 final size:6
Alignment explanation
Indices: 470786--470827 Score: 66
Period size: 6 Copynumber: 6.7 Consensus size: 6
470776 TGAATCGGAT
470786 TTTTAAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAAA TTTT
1 TTTT-AA TTTTAA TTTTAA TTTTAA TTTTAA TTTT-AA TTTT
470828 TCGCAATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 24 0.71
7 10 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTTTAA
Found at i:474601 original size:12 final size:11
Alignment explanation
Indices: 474569--474599 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
474559 AGAATTTTTT
474569 ATTTAAAAATC
1 ATTTAAAAATC
474580 ATTTAAAAATC
1 ATTTAAAAATC
474591 ATTTAAAAA
1 ATTTAAAAA
474600 ATACTATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (11 bp):
ATTTAAAAATC
Found at i:477057 original size:22 final size:22
Alignment explanation
Indices: 477029--477083 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
477019 ACACCGATAT
477029 TAATAATTTTAATAAAAAATAA
1 TAATAATTTTAATAAAAAATAA
477051 TAATAATTTTAATAAAAAATAA
1 TAATAATTTTAATAAAAAATAA
477073 TAAT-ATTTTAA
1 TAATAATTTTAA
477084 ATAACAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 7 0.21
22 26 0.79
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TAATAATTTTAATAAAAAATAA
Found at i:477075 original size:19 final size:21
Alignment explanation
Indices: 476985--477128 Score: 91
Period size: 22 Copynumber: 6.7 Consensus size: 21
476975 TTTTTGATAT
* *
476985 TAATATTTTTAATATAAA-AA
1 TAATAATTTTAATAAAAATAA
* *
477005 TAAT-ATTTTAAATAACACCGATAT
1 TAATAATTTT-AATAA-A--AATAA
477029 TAATAATTTTAATAAAAAATAA
1 TAATAATTTTAAT-AAAAATAA
477051 TAATAATTTTAATAAAAAATAA
1 TAATAATTTTAAT-AAAAATAA
477073 TAAT-ATTTTAAATAACAATATAA
1 TAATAATTTT-AATAA-AA-ATAA
* * * *
477096 CAAAAATATT-A-AATAATAA
1 TAATAATTTTAATAAAAATAA
*
477115 TAATATTTTTAATA
1 TAATAATTTTAATA
477129 GTACATTTTT
Statistics
Matches: 97, Mismatches: 14, Indels: 25
0.71 0.10 0.18
Matches are distributed among these distances:
19 14 0.14
20 10 0.10
21 11 0.11
22 35 0.36
23 7 0.07
24 13 0.13
25 7 0.07
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (21 bp):
TAATAATTTTAATAAAAATAA
Found at i:477087 original size:22 final size:21
Alignment explanation
Indices: 476985--477083 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 21
476975 TTTTTGATAT
476985 TAATATTTTTAATATAAAAATAA
1 TAATA-TTTTAATA-AAAAATAA
* ** *
477008 T-AT-TTTAAATAACACCGATAT
1 TAATATTTTAATAA-A-AAATAA
477029 TAATAATTTTAATAAAAAATAA
1 TAAT-ATTTTAATAAAAAATAA
477051 TAATAATTTTAATAAAAAATAA
1 TAAT-ATTTTAATAAAAAATAA
477073 TAATATTTTAA
1 TAATATTTTAA
477084 ATAACAATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.02
20 8 0.13
21 11 0.17
22 33 0.52
23 2 0.03
24 8 0.13
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (21 bp):
TAATATTTTAATAAAAAATAA
Found at i:477111 original size:68 final size:65
Alignment explanation
Indices: 476985--477119 Score: 146
Period size: 68 Copynumber: 2.0 Consensus size: 65
476975 TTTTTGATAT
* * * ** * *
476985 TAATATTTTTAATATAAAAATAATATTTTAAATAACACCGATATTAATAATTTTAATAAAAAATA
1 TAATAATTTTAATAAAAAAATAATATTTTAAATAACACAGATAACAAAAATTTAAAT-AAAAATA
477050 A
65 A
* *
477051 TAATAATTTTAATAAAAAATAATAATATTTTAAATAACA-ATATAACAAAAATATTAAATAATAA
1 TAATAATTTTAAT-AAAAA-AATAATATTTTAAATAACACAGATAACAAAAAT-TTAAATAAAAA
477115 TAA
63 TAA
477118 TA
1 TA
477120 TTTTTAATAG
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
66 12 0.21
67 21 0.37
68 24 0.42
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.37
Consensus pattern (65 bp):
TAATAATTTTAATAAAAAAATAATATTTTAAATAACACAGATAACAAAAATTTAAATAAAAATAA
Found at i:477125 original size:64 final size:65
Alignment explanation
Indices: 476985--477128 Score: 168
Period size: 64 Copynumber: 2.2 Consensus size: 65
476975 TTTTTGATAT
* * ***
476985 TAATATTTTTAAT-ATAAAAATAATATTTTAAATAACACCGATATTAATAATTTTAATAAAAAAT
1 TAATATTTTTAATAAAAAAAATAATATTTTAAATAACA-C-ATATTAACAAAAATAATAAAAAAT
477049 AA
64 AA
* * *
477051 TAATAATTTTAATAAAAAATAATAATATTTTAAATAACA-ATA-TAACAAAAATATTAAATAATA
1 TAATATTTTTAATAAAAAA-AATAATATTTTAAATAACACATATTAACAAAAATAATAAAAAATA
477114 A
65 A
477115 TAATATTTTTAATA
1 TAATATTTTTAATA
477129 GTACATTTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 29 0.43
65 3 0.04
66 12 0.18
67 4 0.06
68 19 0.28
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (65 bp):
TAATATTTTTAATAAAAAAAATAATATTTTAAATAACACATATTAACAAAAATAATAAAAAATAA
Found at i:478199 original size:25 final size:25
Alignment explanation
Indices: 478120--478248 Score: 99
Period size: 25 Copynumber: 5.0 Consensus size: 25
478110 ATAATCTATA
478120 TATATTAACTTTAAAAAATA-TTTT
1 TATATTAACTTTAAAAAATATTTTT
* * *
478144 TATAACTTAA-ATT-CATAATATTTTAT
1 TAT-A-TTAACTTTAAAAAATATTTT-T
478170 ATATATTAACTTTAAAAAATATTTTT
1 -TATATTAACTTTAAAAAATATTTTT
478196 TATATTAACTTATTAAATAAATATTATTAT
1 TATATTAAC-T-TTAAA-AAATATT-TT-T
478226 TA-ATTTAA-TTT-AAAAATATTTTT
1 TATA-TTAACTTTAAAAAATATTTTT
478249 ATTATATACA
Statistics
Matches: 86, Mismatches: 6, Indels: 27
0.72 0.05 0.23
Matches are distributed among these distances:
23 1 0.01
24 10 0.12
25 26 0.30
26 12 0.14
27 19 0.22
28 8 0.09
29 3 0.03
30 7 0.08
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
TATATTAACTTTAAAAAATATTTTT
Found at i:478919 original size:24 final size:24
Alignment explanation
Indices: 478887--478952 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 24
478877 AAATATATTT
*
478887 AAAATTTAAAATATAAAATA-TACA
1 AAAAATTAAAATATAAAATACTA-A
*
478911 AAAAATTAATATA-AAAATACTAA
1 AAAAATTAAAATATAAAATACTAA
*
478934 AAAAATTAAATTACTAAAA
1 AAAAATTAAAATA-TAAAA
478953 ATTTAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 18 0.51
24 13 0.37
25 4 0.11
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (24 bp):
AAAAATTAAAATATAAAATACTAA
Found at i:479222 original size:30 final size:30
Alignment explanation
Indices: 479185--479253 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
479175 AATTACCTCA
**
479185 TTCATACATGAA-GTATACCCAATTCTCAAT
1 TTCATACATGAATGTATA-AAAATTCTCAAT
* *
479215 TTTATACAT-AATGTATAAAAATTCTCGAT
1 TTCATACATGAATGTATAAAAATTCTCAAT
479244 TTCATACATG
1 TTCATACATG
479254 GTGTTTTCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
29 19 0.59
30 13 0.41
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (30 bp):
TTCATACATGAATGTATAAAAATTCTCAAT
Found at i:479400 original size:31 final size:31
Alignment explanation
Indices: 479334--479392 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 31
479324 AATTTAAGGA
*
479334 AAAATGGTTTTTGGACTTGAATTGAATTTAC
1 AAAATGGTATTTGGACTTGAATTGAATTTAC
479365 AAAAT-GTATTTGGACTT-AATTGAATTTA
1 AAAATGGTATTTGGACTTGAATTGAATTTA
479393 TTCAAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 11 0.41
30 11 0.41
31 5 0.19
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (31 bp):
AAAATGGTATTTGGACTTGAATTGAATTTAC
Found at i:479635 original size:21 final size:21
Alignment explanation
Indices: 479609--479650 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
479599 ATTTGAATAT
*
479609 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
479630 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
479651 CCCATTATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:480884 original size:19 final size:20
Alignment explanation
Indices: 480860--480907 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
480850 AACGATTTTC
*
480860 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
480879 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
480899 TTTTGAAAA
1 TTTTGAAAA
480908 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:482169 original size:31 final size:31
Alignment explanation
Indices: 482102--482161 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
482092 CAATTTAAGG
* *
482102 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTAAATTTA
482133 CAAAAT-GTATTTGGACTT-AATTAAATTTA
1 CAAAATGGTATTTGGACTTGAATTAAATTTA
482162 TTCAAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 10 0.37
30 11 0.41
31 6 0.22
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.42
Consensus pattern (31 bp):
CAAAATGGTATTTGGACTTGAATTAAATTTA
Found at i:482413 original size:20 final size:21
Alignment explanation
Indices: 482377--482417 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
482367 ATTTGAATAT
*
482377 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
482398 TATGAA-GGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
482418 CCCATTCTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:484123 original size:19 final size:18
Alignment explanation
Indices: 484081--484124 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
484071 GAGTTAATAT
*
484081 TTATATAAATAAGGCTTAA
1 TTATA-AAATAAGGCCTAA
*
484100 ATATAAAATAAGTGCCTAA
1 TTATAAAATAAG-GCCTAA
484119 TTATAA
1 TTATAA
484125 CGTTTTTCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (18 bp):
TTATAAAATAAGGCCTAA
Found at i:489587 original size:32 final size:32
Alignment explanation
Indices: 489549--489610 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
489539 TCAGTGACTT
*
489549 ACTAACATCCTAACATTTATTT-TATTGTTCGA
1 ACTAACATACTAACATTTATTTAT-TTGTTCGA
*
489581 ACTAACATACTAACTTTTATTTATTTGTTC
1 ACTAACATACTAACATTTATTTATTTGTTC
489611 TTATTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.05, T:0.47
Consensus pattern (32 bp):
ACTAACATACTAACATTTATTTATTTGTTCGA
Found at i:490267 original size:5 final size:5
Alignment explanation
Indices: 490253--490289 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
490243 TTTCACCTCG
*
490253 TTTTA TTTTTA TTTTG TTTTA TTTTA TTTTA TTTTA T
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
490290 CTTTGATATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:501624 original size:17 final size:17
Alignment explanation
Indices: 501604--501637 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
501594 ATTATGGAAA
*
501604 AAATAAAAATAATAAAT
1 AAATAAAAATAAAAAAT
501621 AAATAAAAATAAAAAAT
1 AAATAAAAATAAAAAAT
501638 TTATAGTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATAAAAATAAAAAAT
Found at i:511064 original size:65 final size:64
Alignment explanation
Indices: 510995--511139 Score: 168
Period size: 64 Copynumber: 2.2 Consensus size: 64
510985 TGCATTTGTG
* * ** *
510995 CACAAATTACATTTGATGTTTC-AAATGAGCCTGGAGTGCATCGATGCA-TGGTATGTGCATCGG
1 CACAAAATACATTCGATG-TTCAAAAT-AGCCAAGAGTGCATCGATGCATTGCT-TGTGCATCGG
511058 TA
63 TA
* **
511060 CACAAAATGCATTCGATGTTCAAAATATTCAAGAGTGCATCGATGCATTGCTTGTGCATCGGTA
1 CACAAAATACATTCGATGTTCAAAATAGCCAAGAGTGCATCGATGCATTGCTTGTGCATCGGTA
*
511124 CACAAAATGCATTCGA
1 CACAAAATACATTCGA
511140 AATGGGTGTG
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
64 48 0.69
65 22 0.31
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (64 bp):
CACAAAATACATTCGATGTTCAAAATAGCCAAGAGTGCATCGATGCATTGCTTGTGCATCGGTA
Found at i:525680 original size:6 final size:6
Alignment explanation
Indices: 525639--525682 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
525629 AAAAGCAACA
*
525639 AAAATAG AAAAAG AAAGAAG AAAAAC AAAAAG -AAAAG AAAAAG A
1 AAAA-AG AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG A
525683 CTCCTACATC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
5 5 0.15
6 18 0.55
7 10 0.30
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:532402 original size:23 final size:24
Alignment explanation
Indices: 532372--532473 Score: 104
Period size: 23 Copynumber: 4.3 Consensus size: 24
532362 AACTGAAGAG
532372 AAGAAAATGAAACGAAAAAA-AAA
1 AAGAAAATGAAACGAAAAAAGAAA
*
532395 AAGAAAATGAAACGAAAAAAGAAG
1 AAGAAAATGAAACGAAAAAAGAAA
* * *
532419 AA-AAACTAAAAAAGAAAAAAGAAA
1 AAGAAAAT-GAAACGAAAAAAGAAA
*
532443 AAGAAAA-GAAA-GACAAAAACATAA
1 AAGAAAATGAAACGA-AAAAAGA-AA
532467 AAGAAAA
1 AAGAAAA
532474 AGGGGTTAAG
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
22 2 0.03
23 33 0.50
24 28 0.42
25 3 0.05
ACGTcount: A:0.77, C:0.05, G:0.14, T:0.04
Consensus pattern (24 bp):
AAGAAAATGAAACGAAAAAAGAAA
Found at i:532406 original size:6 final size:6
Alignment explanation
Indices: 532372--532475 Score: 50
Period size: 6 Copynumber: 16.5 Consensus size: 6
532362 AACTGAAGAG
* * * * *
532372 AAGAAA ATG-AA ACGAAA AAAAAA AAGAAA ATGAAA CGAAAAAA GAAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA --AAGAAA -AAGAAA
* * * *
532422 AACTAAAA AAGAAAA AAGAAA AAG-AA AAGAAA GACAAA AACATAA AAGAAA
1 AA--GAAA AAG-AAA AAGAAA AAGAAA AAGAAA AAGAAA AAGA-AA AAGAAA
532473 AAG
1 AAG
532476 GGGTTAAGAT
Statistics
Matches: 75, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
5 9 0.12
6 40 0.53
7 17 0.23
8 9 0.12
ACGTcount: A:0.77, C:0.05, G:0.14, T:0.04
Consensus pattern (6 bp):
AAGAAA
Found at i:533786 original size:139 final size:139
Alignment explanation
Indices: 533457--533790 Score: 445
Period size: 139 Copynumber: 2.4 Consensus size: 139
533447 AATCATTTGT
* * * *
533457 GACCAGATCTTCTCAATGCGAAGGAGAAGCATCATCCTTAGACAACTAGACTTCCACATCACGTA
1 GACCAGATCTCCTCAACGCGAAGGAGAAGCGTCATCCTTAGACAACTAGACTTCCTCATCACGTA
* * * *
533522 GGAACCGTGTTGTCTCCAAATTATCCCTAAAGACGGCTAGACATCCTCATCACGTATGAACAATG
66 GGAACCGTATTGTCTCCAAATTATCCCTAAAGACGACTAGACATCCTCATCACATAAGAACAATG
* *
533587 TCGTCCATC
131 TCATCCACC
* * * * *
533596 GACCAAATCTCCTCAACGTGAAGGAGCAGCGTCATCATTAGAAAACTAGACTTCCTCATCACGTA
1 GACCAGATCTCCTCAACGCGAAGGAGAAGCGTCATCCTTAGACAACTAGACTTCCTCATCACGTA
* * *
533661 GGAACCGTATTGTCTCCAAATTATCCCTAAAGACGACTATACATCCTCGTCACATAAGAATAATG
66 GGAACCGTATTGTCTCCAAATTATCCCTAAAGACGACTAGACATCCTCATCACATAAGAACAATG
*
533726 TCATTCACC
131 TCATCCACC
* * * *
533735 GACCAGATCTCCTCAACGCGAAGGAGTAGTGTCACCCTCAGACAA-TCAGACTTCCT
1 GACCAGATCTCCTCAACGCGAAGGAGAAGCGTCATCCTTAGACAACT-AGACTTCCT
533791 TAATGCGAAG
Statistics
Matches: 167, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
138 1 0.01
139 166 0.99
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (139 bp):
GACCAGATCTCCTCAACGCGAAGGAGAAGCGTCATCCTTAGACAACTAGACTTCCTCATCACGTA
GGAACCGTATTGTCTCCAAATTATCCCTAAAGACGACTAGACATCCTCATCACATAAGAACAATG
TCATCCACC
Found at i:534096 original size:107 final size:107
Alignment explanation
Indices: 533895--534089 Score: 275
Period size: 107 Copynumber: 1.8 Consensus size: 107
533885 TCTGAAAGCA
* * ** *
533895 ACCAGAACTCTTCAACACGGATAAGCAGAGTTTTCTTCAACACCAAATTATCTCCAGATTGATCC
1 ACCAGAACTATTCAACACGGATAAGAAGAGTCATCTTCAACACCAAATTATCTCCAGATTGACCC
* *
533960 GATTTCCTCAACGAGAATGAACAAAGTCATTTTTTTAACGCG
66 GACTTCCTCAAAGAGAATGAACAAAGTCATTTTTTTAACGCG
* * * *
534002 ACCAGATCTATTCAACATGGATGAGAAGAGTCATCTTCAACACCAAATTATCTTCAGATTGACCC
1 ACCAGAACTATTCAACACGGATAAGAAGAGTCATCTTCAACACCAAATTATCTCCAGATTGACCC
534067 GACTTCCTCAAA-AGGAATGAACA
66 GACTTCCTCAAAGA-GAATGAACA
534090 TTGTCATCTT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
106 1 0.01
107 75 0.99
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.26
Consensus pattern (107 bp):
ACCAGAACTATTCAACACGGATAAGAAGAGTCATCTTCAACACCAAATTATCTCCAGATTGACCC
GACTTCCTCAAAGAGAATGAACAAAGTCATTTTTTTAACGCG
Found at i:535844 original size:9 final size:9
Alignment explanation
Indices: 535832--535857 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
535822 TTTAGGCACT
535832 TTATTTTCG
1 TTATTTTCG
535841 TTATTTTCG
1 TTATTTTCG
535850 TTATTTTC
1 TTATTTTC
535858 AATTTGGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.08, T:0.69
Consensus pattern (9 bp):
TTATTTTCG
Found at i:535991 original size:32 final size:32
Alignment explanation
Indices: 535946--536082 Score: 123
Period size: 32 Copynumber: 4.2 Consensus size: 32
535936 TCACTGACTT
* * *
535946 ACTAACATCCTAACATTTATTTTATTGTTCGA
1 ACTAACATACTAACTTTTATTTTATTGTTCTA
*
535978 ACTAACATACTAACTTTTA-TTTATTTGTTCTT
1 ACTAACATACTAACTTTTATTTTA-TTGTTCTA
* * * *
536010 ATTATCATACTAACTTTTTATTTTTATTGTTATC
1 ACTAACATACTAAC-TTTTA-TTTTATTGTTCTA
* * * *
536044 ACTAACTTACTAATCCTTTATTTTATTGTACAA
1 ACTAACATACTAA-CTTTTATTTTATTGTTCTA
536077 ACTAAC
1 ACTAAC
536083 CCCTAACTTT
Statistics
Matches: 84, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
31 4 0.05
32 35 0.42
33 20 0.24
34 20 0.24
35 5 0.06
ACGTcount: A:0.31, C:0.17, G:0.04, T:0.49
Consensus pattern (32 bp):
ACTAACATACTAACTTTTATTTTATTGTTCTA
Found at i:537762 original size:21 final size:21
Alignment explanation
Indices: 537736--537790 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
537726 CTTTATATAG
537736 TAGTATCGATACCATGAAGGA
1 TAGTATCGATACCATGAAGGA
537757 TAGTATCGATACCATGAAGGA
1 TAGTATCGATACCATGAAGGA
537778 TAGTATCGATACC
1 TAGTATCGATACC
537791 GTCAAGCCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (21 bp):
TAGTATCGATACCATGAAGGA
Found at i:539026 original size:24 final size:26
Alignment explanation
Indices: 538980--539029 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
538970 AATATATATA
*
538980 TATTTTAATATTAAATTTTATTTTTAG
1 TATTTTAATATT-AATTTAATTTTTAG
539007 TATTTTAATA-T-ATTTAATTTTTA
1 TATTTTAATATTAATTTAATTTTTA
539030 AAATATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 11 0.50
26 1 0.05
27 10 0.45
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (26 bp):
TATTTTAATATTAATTTAATTTTTAG
Found at i:539030 original size:16 final size:16
Alignment explanation
Indices: 539009--539056 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
538999 ATTTTTAGTA
539009 TTTTAATATATTTAAT
1 TTTTAATATATTTAAT
*
539025 TTTTAAAATATTTTTAAAT
1 TTTT--AATATATTT-AAT
539044 TTTTAA-ATATTTA
1 TTTTAATATATTTA
539057 TTTAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
15 1 0.04
16 9 0.33
17 2 0.07
18 8 0.30
19 7 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTTAATATATTTAAT
Found at i:539046 original size:19 final size:17
Alignment explanation
Indices: 538998--539055 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 17
538988 TATTAAATTT
*
538998 TATTTTTAGTATTTT-AA
1 TATTTTTAAT-TTTTAAA
*
539015 TATATTTAATTTTTAAAA
1 TATTTTTAATTTTT-AAA
539033 TATTTTTAAATTTTTAAA
1 TATTTTT-AATTTTTAAA
539051 TATTT
1 TATTT
539056 ATTTAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 4 0.11
17 8 0.23
18 16 0.46
19 7 0.20
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (17 bp):
TATTTTTAATTTTTAAA
Found at i:539672 original size:2 final size:2
Alignment explanation
Indices: 539665--539694 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
539655 TTAGACACAA
539665 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
539695 GAAAATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:542551 original size:13 final size:13
Alignment explanation
Indices: 542533--542603 Score: 60
Period size: 13 Copynumber: 5.5 Consensus size: 13
542523 GGACTAACAA
542533 TGTGGTAATAGAT
1 TGTGGTAATAGAT
*
542546 TGTGGTTGAACA-A-
1 TGTGG-T-AATAGAT
542559 TGTGGTAATAGAT
1 TGTGGTAATAGAT
*
542572 TGTGGTTGAACA-A-
1 TGTGG-T-AATAGAT
542585 TGTGGTAATAGAT
1 TGTGGTAATAGAT
542598 TGTGGT
1 TGTGGT
542604 TAAGGTTTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
11 6 0.13
12 4 0.09
13 26 0.57
14 4 0.09
15 6 0.13
ACGTcount: A:0.28, C:0.03, G:0.32, T:0.37
Consensus pattern (13 bp):
TGTGGTAATAGAT
Found at i:542557 original size:26 final size:26
Alignment explanation
Indices: 542528--542604 Score: 154
Period size: 26 Copynumber: 3.0 Consensus size: 26
542518 AGACTGGACT
542528 AACAATGTGGTAATAGATTGTGGTTG
1 AACAATGTGGTAATAGATTGTGGTTG
542554 AACAATGTGGTAATAGATTGTGGTTG
1 AACAATGTGGTAATAGATTGTGGTTG
542580 AACAATGTGGTAATAGATTGTGGTT
1 AACAATGTGGTAATAGATTGTGGTT
542605 AAGGTTTAGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.35
Consensus pattern (26 bp):
AACAATGTGGTAATAGATTGTGGTTG
Found at i:543611 original size:2 final size:2
Alignment explanation
Indices: 543604--543636 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
543594 AGTTTCTAGG
543604 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
543637 CGATTTTATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:545178 original size:43 final size:43
Alignment explanation
Indices: 545125--545397 Score: 255
Period size: 43 Copynumber: 6.4 Consensus size: 43
545115 TGGTAACAAA
*** * * *
545125 AAACGCCGCAATAGGTAACGATATATAGCGGCGTTTGTCCAAC
1 AAACGCCGCAATAGGTGTTGAGATTTAGCGGCGTTTTTCCAAC
* * *
545168 AAACGCCGCAATAGGTGTTGATATTTAGCGGCTTTTTTCCAAT
1 AAACGCCGCAATAGGTGTTGAGATTTAGCGGCGTTTTTCCAAC
* *
545211 AAACGCCGCAATAGGTGTTGAGATTTAGCGGAGTTTTTCCCAC
1 AAACGCCGCAATAGGTGTTGAGATTTAGCGGCGTTTTTCCAAC
** * *
545254 AAACGTTGTAATAGGTGTTGAGATTTAGCGGCGTTTTTCCCAC
1 AAACGCCGCAATAGGTGTTGAGATTTAGCGGCGTTTTTCCAAC
* * * * *
545297 AAACGCTGCAATAGGTCTTGA-ATTTAGCGGCATTTTTCCCAT
1 AAACGCCGCAATAGGTGTTGAGATTTAGCGGCGTTTTTCCAAC
* * * * * **
545339 AAACACCGCAAAAGAT-CTG-GTATATAGCGGCGTTTTTTAGAAC
1 AAACGCCGCAATAGGTGTTGAG-ATTTAGCGGCG-TTTTTCCAAC
*
545382 AAACGCCGCAAAAGGT
1 AAACGCCGCAATAGGT
545398 CATATCTATA
Statistics
Matches: 193, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
41 2 0.01
42 40 0.21
43 151 0.78
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
AAACGCCGCAATAGGTGTTGAGATTTAGCGGCGTTTTTCCAAC
Found at i:545367 original size:42 final size:42
Alignment explanation
Indices: 545279--545375 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
545269 TGTTGAGATT
* * * * * *
545279 TAGCGGCGTTTTTCCCACAAACGCTGCAATAGGTCTTGAATT
1 TAGCGGCGTTTTTCCCACAAACACCGCAAAAGATCTGGAATA
* * *
545321 TAGCGGCATTTTTCCCATAAACACCGCAAAAGATCTGGTATA
1 TAGCGGCGTTTTTCCCACAAACACCGCAAAAGATCTGGAATA
545363 TAGCGGCGTTTTT
1 TAGCGGCGTTTTT
545376 TAGAACAAAC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (42 bp):
TAGCGGCGTTTTTCCCACAAACACCGCAAAAGATCTGGAATA
Found at i:548822 original size:41 final size:41
Alignment explanation
Indices: 548761--549078 Score: 332
Period size: 41 Copynumber: 7.7 Consensus size: 41
548751 CTTTAAACTT
* ** *
548761 GCGGCGTTTGTATAAAAACGCTACTACTGTACGAGTCTATC
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
* * * * *
548802 GCGACGTTTGTACAAAAACGCTACTAAAGTACAAGCCTATA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
* * *
548843 GCGGCGTTTGTATAAAAACGCCACT-AAGTACAAGTATATT
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
* * *
548883 GCGGCATTTTTATAAAAACGCCACTAAAGTACGAGTTTATA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
* * * * * *
548924 GCGGCGTTTGTATAAAAACACCGCTAAAGTACTACTATATC
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
*
548965 GTGGCGTTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
1 GCGGCG-TTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
* * * * * *
549007 GCGGCGTTTGTATAAAAACGTCGCTAAAGTACTACTCTGTC
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
* * *
549048 GTGGCATTTTGTATAAAAACGCCGCTAAAGT
1 GCGGC-GTTTGTATAAAAACGCCACTAAAGT
549079 TACCATTTAT
Statistics
Matches: 231, Mismatches: 43, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
40 35 0.15
41 139 0.60
42 57 0.25
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (41 bp):
GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
Found at i:548924 original size:81 final size:83
Alignment explanation
Indices: 548761--549078 Score: 381
Period size: 83 Copynumber: 3.9 Consensus size: 83
548751 CTTTAAACTT
* ** * * * * * * *
548761 GCGGCGTTTGTATAAAAACGCTACTACTGTACGAGTCTATCGCGAC-GTTTGTACAAAAACGCTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTATATCGCGGCATTTTGTATAAAAACGCCA
* *
548825 CTAAAGTACAAGCCTATA
66 CTAAAGTACGAGTCTATA
* * *
548843 GCGGCGTTTGTATAAAAACGCCACT-AAGTACAAGTATATTGCGGCATTTT-TATAAAAACGCCA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTATATCGCGGCATTTTGTATAAAAACGCCA
*
548906 CTAAAGTACGAGTTTATA
66 CTAAAGTACGAGTCTATA
* * * *
548924 GCGGCGTTTGTATAAAAACACCGCTAAAGTACTACTATATCGTGGCGTTTTGTATAAAAACGCCA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTATATCGCGGCATTTTGTATAAAAACGCCA
548989 CTAAAGTACGAGTCTATA
66 CTAAAGTACGAGTCTATA
* * * * * *
549007 GCGGCGTTTGTATAAAAACGTCGCTAAAGTACTACTCTGTCGTGGCATTTTGTATAAAAACGCCG
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTATATCGCGGCATTTTGTATAAAAACGCCA
549072 CTAAAGT
66 CTAAAGT
549079 TACCATTTAT
Statistics
Matches: 206, Mismatches: 27, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
81 63 0.31
82 47 0.23
83 96 0.47
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (83 bp):
GCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTATATCGCGGCATTTTGTATAAAAACGCCA
CTAAAGTACGAGTCTATA
Found at i:548998 original size:83 final size:83
Alignment explanation
Indices: 548808--549078 Score: 384
Period size: 83 Copynumber: 3.3 Consensus size: 83
548798 TATCGCGACG
* * * * *
548808 TTTGTACAAAAACGCTACTAAAGTACAAGCCTATAGCGGCGTTTGTATAAAAACGCCACT-AAGT
1 TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAAAAACGCCGCTAAAGT
* * * *
548872 ACAAGTATATTGCGGCAT
66 ACTACTATATCGTGGCAT
* *
548890 TTT-TATAAAAACGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAAAAACACCGCTAAAGT
1 TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAAAAACGCCGCTAAAGT
*
548954 ACTACTATATCGTGGCGT
66 ACTACTATATCGTGGCAT
*
548972 TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAAAAACGTCGCTAAAGT
1 TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAAAAACGCCGCTAAAGT
* *
549037 ACTACTCTGTCGTGGCAT
66 ACTACTATATCGTGGCAT
*
549055 TTTGTATAAAAACGCCGCTAAAGT
1 TTTGTATAAAAACGCCACTAAAGT
549079 TACCATTTAT
Statistics
Matches: 168, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
81 49 0.29
82 23 0.14
83 96 0.57
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (83 bp):
TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAAAAACGCCGCTAAAGT
ACTACTATATCGTGGCAT
Found at i:554647 original size:12 final size:12
Alignment explanation
Indices: 554632--554686 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 12
554622 GTTATTTAAA
554632 CGGGTATTGGGC
1 CGGGTATTGGGC
*
554644 CGGGTATTGGGT
1 CGGGTATTGGGC
*
554656 CGGGTATTGGGT
1 CGGGTATTGGGC
** *
554668 CGGAAATCGGGC
1 CGGGTATTGGGC
554680 CGGGTAT
1 CGGGTAT
554687 ATATATATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.13, C:0.15, G:0.47, T:0.25
Consensus pattern (12 bp):
CGGGTATTGGGC
Found at i:554748 original size:24 final size:25
Alignment explanation
Indices: 554684--554772 Score: 78
Period size: 24 Copynumber: 3.6 Consensus size: 25
554674 TCGGGCCGGG
554684 TATATATATATATATATTTAAATTAAA
1 TATATAT-TATAT-TATTTAAATTAAA
*
554711 TATATATT-TTTTATTTAAATTAAA
1 TATATATTATATTATTTAAATTAAA
* * *
554735 T-T-TATTAATATTATATATA-TATA
1 TATATATT-ATATTATTTAAATTAAA
554758 TATATATATATATTA
1 TATATAT-TATATTA
554773 ATATTATTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
22 4 0.08
23 5 0.10
24 23 0.44
25 11 0.21
26 2 0.04
27 7 0.13
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TATATATTATATTATTTAAATTAAA
Found at i:554753 original size:2 final size:2
Alignment explanation
Indices: 554742--554770 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
554732 AAATTTATTA
554742 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
554771 TAATATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:560227 original size:29 final size:30
Alignment explanation
Indices: 560167--560229 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
560157 ATATATATAT
560167 ATATATATTATTTTTACCTTAAATTATAAA
1 ATATATATTATTTTTACCTTAAATTATAAA
* * *
560197 ATATATTTTATTTTTACTTTAACTTA-AAA
1 ATATATATTATTTTTACCTTAAATTATAAA
560226 ATAT
1 ATAT
560230 TTTAATCTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.52
Consensus pattern (30 bp):
ATATATATTATTTTTACCTTAAATTATAAA
Found at i:560244 original size:27 final size:27
Alignment explanation
Indices: 560193--560261 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
560183 CCTTAAATTA
* *
560193 TAAAATATATTTTATTTTTACTTTAACT
1 TAAAA-ATATTTTAATCTTACTTTAACT
* *
560221 TAAAAATATTTTAATCTTATTTTAAGT
1 TAAAAATATTTTAATCTTACTTTAACT
* *
560248 TAAAATTAATTTAA
1 TAAAAATATTTTAA
560262 GATAAAATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
27 30 0.86
28 5 0.14
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (27 bp):
TAAAAATATTTTAATCTTACTTTAACT
Found at i:560260 original size:16 final size:17
Alignment explanation
Indices: 560241--560274 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
560231 TTAATCTTAT
*
560241 TTTAAGTTAAAAT-TAA
1 TTTAAGATAAAATATAA
560257 TTTAAGATAAAATATAA
1 TTTAAGATAAAATATAA
560274 T
1 T
560275 ATATATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
TTTAAGATAAAATATAA
Found at i:560332 original size:36 final size:41
Alignment explanation
Indices: 560263--560336 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 41
560253 TTAATTTAAG
560263 ATAAAATATAATATATATATAATTATTAAAAATATAAATGT
1 ATAAAATATAATATATATATAATTATTAAAAATATAAATGT
*
560304 ATAAAA-ATAATA-A-ATTTAATT-TT-AAAATATAAA
1 ATAAAATATAATATATATATAATTATTAAAAATATAAA
560337 AATCTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 10 0.31
37 2 0.06
38 7 0.22
39 1 0.03
40 6 0.19
41 6 0.19
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (41 bp):
ATAAAATATAATATATATATAATTATTAAAAATATAAATGT
Found at i:560345 original size:28 final size:30
Alignment explanation
Indices: 560303--560363 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
560293 AATATAAATG
560303 TATAAAAATAAT-AAATT-TAATTTTAAAA
1 TATAAAAATAATAAAATTATAATTTTAAAA
** *
560331 TATAAAAATCTTAAAATTATTATTTTAAAA
1 TATAAAAATAATAAAATTATAATTTTAAAA
560361 TAT
1 TAT
560364 TATATTAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 10 0.36
29 5 0.18
30 13 0.46
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (30 bp):
TATAAAAATAATAAAATTATAATTTTAAAA
Found at i:560397 original size:24 final size:22
Alignment explanation
Indices: 560348--560416 Score: 57
Period size: 24 Copynumber: 2.8 Consensus size: 22
560338 ATCTTAAAAT
* *
560348 TATTATTTTAAAATATTATATTAA
1 TATTA-TTTAAATTA-TATATAAA
560372 TAATTATTTAAATTATATATGAAA
1 T-ATTATTTAAATTATATAT-AAA
560396 TATTCAATTATAAATTATATA
1 TATT--ATT-TAAATTATATA
560417 GTAGAAGGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
23 8 0.21
24 12 0.32
25 7 0.18
26 11 0.29
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (22 bp):
TATTATTTAAATTATATATAAA
Found at i:560431 original size:15 final size:15
Alignment explanation
Indices: 560411--560463 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
560401 AATTATAAAT
*
560411 TATATAGTAGAAGGA
1 TATATAATAGAAGGA
560426 TATATAATAGAAGGA
1 TATATAATAGAAGGA
* *
560441 TGTGATAATTA-AATGA
1 TAT-ATAA-TAGAAGGA
560457 TATATAA
1 TATATAA
560464 GGAAAGATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 20 0.62
16 10 0.31
17 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.32
Consensus pattern (15 bp):
TATATAATAGAAGGA
Found at i:561084 original size:21 final size:21
Alignment explanation
Indices: 561060--561108 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
561050 TAAAGTCTCG
561060 AGTCAAGCTCAAATCAACCCA
1 AGTCAAGCTCAAATCAACCCA
*
561081 AGTCGAGCTCAAATCAACCCA
1 AGTCAAGCTCAAATCAACCCA
561102 AGTCAAG
1 AGTCAAG
561109 TTTTTACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.41, C:0.31, G:0.14, T:0.14
Consensus pattern (21 bp):
AGTCAAGCTCAAATCAACCCA
Found at i:567008 original size:35 final size:35
Alignment explanation
Indices: 566969--567037 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
566959 TTCATGTTCA
566969 AAATTCCAAAACACTTCAATTACATTATAAACCCG
1 AAATTCCAAAACACTTCAATTACATTATAAACCCG
* * * *
567004 AAATTCCAAAATACTTTAATTATATTTTAAACCC
1 AAATTCCAAAACACTTCAATTACATTATAAACCC
567038 TAAAATAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.32
Consensus pattern (35 bp):
AAATTCCAAAACACTTCAATTACATTATAAACCCG
Found at i:567113 original size:34 final size:35
Alignment explanation
Indices: 567048--567115 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 35
567038 TAAAATAAAG
*
567048 TATTTTAGAATTTAAGGTTTAAAATGTAATTGAAT
1 TATTTTAGAATTTAAGGTTTAAAATGAAATTGAAT
* * *
567083 TATTTTGGAATTT-GGGTTTAGAATGAAATTGAA
1 TATTTTAGAATTTAAGGTTTAAAATGAAATTGAA
567116 GATTGTGTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (35 bp):
TATTTTAGAATTTAAGGTTTAAAATGAAATTGAAT
Found at i:568560 original size:35 final size:37
Alignment explanation
Indices: 568493--568561 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 37
568483 GAAAATATTT
* * *
568493 ATATATTTTGTTTAAAAAATTTAAATTCATAAAATTC
1 ATATACTTTGTTTAAAAAATTAAAAATCATAAAATTC
*
568530 ATATACTTT-TTTACAAAATTAAAAAT-ATAAAA
1 ATATACTTTGTTTAAAAAATTAAAAATCATAAAA
568562 AGGTTTAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 6 0.21
36 14 0.50
37 8 0.29
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (37 bp):
ATATACTTTGTTTAAAAAATTAAAAATCATAAAATTC
Found at i:570285 original size:65 final size:64
Alignment explanation
Indices: 570152--570311 Score: 257
Period size: 65 Copynumber: 2.5 Consensus size: 64
570142 TGCACTAAGA
* * *
570152 GTGCATCGATGCATAAAATGCATTCGATGTTTTGAAAAAGCCTGAGTGCATCGATGTATGGTAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAAACCCTGAGTGCATCGATGCATGGTAT
* * *
570216 GTGCATCGATGAATCAAATGCTTTCGATGTTTTTATAAAACCCTGAGTGCATCGATGCATGGTAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTGA-AAAACCCTGAGTGCATCGATGCATGGTAT
570281 GTGCATCGATGCATCAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
570312 CAATTAAATC
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
64 31 0.36
65 56 0.64
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAAACCCTGAGTGCATCGATGCATGGTAT
Found at i:570351 original size:65 final size:64
Alignment explanation
Indices: 570152--570359 Score: 233
Period size: 65 Copynumber: 3.2 Consensus size: 64
570142 TGCACTAAGA
* * * *
570152 GTGCATCGATGCATAAAATGCATTCGATGTTTTGAA-AAAGCCTGAGTGCATCGATGTATGGTAT
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCAATAAACCCTGAGTGCATCGATGCATGGTAT
* * **
570216 GTGCATCGATGAATCAAATGCTTTCGATGTTTTTATAAAACCCTGAGTGCATCGATGCATGGTAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAT-AAACCCTGAGTGCATCGATGCATGGTAT
* * * *
570281 GTGCATCGATGCATCAAATGCATTCGATG-TTCAATTAAATCATCG-GTGCATCGATGCATAGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAA-TAAACCCT-GAGTGCATCGATGCATGGTA
570344 T
64 T
*
570345 GATGCATCGGTGCAT
1 G-TGCATCGATGCAT
570360 GCCTTTGAAT
Statistics
Matches: 123, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
63 4 0.03
64 52 0.42
65 67 0.54
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAATAAACCCTGAGTGCATCGATGCATGGTAT
Found at i:576201 original size:21 final size:21
Alignment explanation
Indices: 576175--576299 Score: 96
Period size: 21 Copynumber: 5.8 Consensus size: 21
576165 AGTCGAGGTT
576175 TTATGTGGTC-CTTCGGGACAA
1 TTATGTGG-CACTTCGGGACAA
*
576196 TTATGTGGTCA-TTCGAGACAA
1 TTATGTGG-CACTTCGGGACAA
*
576217 ATATGTGGCACTTC-GGAGCAAA
1 TTATGTGGCACTTCGGGA-C-AA
* *
576239 CCTATGTGGCACTTCGGTGTAAAA
1 -TTATGTGGCACTTCGG-G-ACAA
* *
576263 CTATGTGGTC-CTTCAGGACAA
1 TTATGTGG-CACTTCGGGACAA
576284 TTATGTGGCACTTCGG
1 TTATGTGGCACTTCGG
576300 TGCAAATTAC
Statistics
Matches: 85, Mismatches: 9, Indels: 20
0.75 0.08 0.18
Matches are distributed among these distances:
20 5 0.06
21 45 0.53
22 3 0.04
23 26 0.31
24 4 0.05
25 1 0.01
26 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (21 bp):
TTATGTGGCACTTCGGGACAA
Found at i:579069 original size:19 final size:19
Alignment explanation
Indices: 579045--579083 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
579035 GCCAATCACT
579045 CCAACATCTCAAGCTATCG
1 CCAACATCTCAAGCTATCG
579064 CCAACATCTCAAGCTATCG
1 CCAACATCTCAAGCTATCG
579083 C
1 C
579084 TGCTGTTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.38, G:0.10, T:0.21
Consensus pattern (19 bp):
CCAACATCTCAAGCTATCG
Found at i:582033 original size:18 final size:18
Alignment explanation
Indices: 582010--582048 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
582000 TGCCATGTGG
582010 ATAAGGTTTAGGGTGTAT
1 ATAAGGTTTAGGGTGTAT
582028 ATAAGGTTTAGGGTGTAT
1 ATAAGGTTTAGGGTGTAT
582046 ATA
1 ATA
582049 TTTTCTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (18 bp):
ATAAGGTTTAGGGTGTAT
Found at i:592081 original size:30 final size:29
Alignment explanation
Indices: 592038--592113 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 29
592028 AGGAAAAAGA
* *
592038 AAAAAAAGGGAAAAATCAAAATAATGAA-
1 AAAAAAAGAGAAAAATCAAAAGAATGAAT
**
592066 AAATGAAAAGAGAAAAAGAGAAAAGAATGAAT
1 AAA--AAAAGAGAAAAA-TCAAAAGAATGAAT
592098 AAAAAAAGAGAAAAAT
1 AAAAAAAGAGAAAAAT
592114 GGAGAAAATG
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 3 0.08
30 23 0.59
31 10 0.26
32 3 0.08
ACGTcount: A:0.72, C:0.01, G:0.17, T:0.09
Consensus pattern (29 bp):
AAAAAAAGAGAAAAATCAAAAGAATGAAT
Found at i:592088 original size:22 final size:20
Alignment explanation
Indices: 592063--592114 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 20
592053 TCAAAATAAT
592063 GAAAAATGAAAAGAGAAAAAGA
1 GAAAAATGAAAA-A-AAAAAGA
*
592085 GAAAAGAATGAATAAAAAAAGA
1 G-AAA-AATGAAAAAAAAAAGA
592107 GAAAAATG
1 GAAAAATG
592115 GAGAAAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 4 0.15
21 3 0.11
22 9 0.33
23 4 0.15
24 7 0.26
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (20 bp):
GAAAAATGAAAAAAAAAAGA
Found at i:593236 original size:55 final size:55
Alignment explanation
Indices: 593170--593980 Score: 708
Period size: 55 Copynumber: 14.7 Consensus size: 55
593160 TTGAAGCATC
* * *
593170 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGAAGCGAACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGATTGTTG
* * * *
593225 AAGATTGTTCGAGTCTTATACTCTCTAAAGGAATAAGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGATTGTTG
* * * *
593280 AAGATTGTTCGAGTCTTATCCTCTCTGAAGGAATAGGGAGCAGACATGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGATTGTTG
* *
593335 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATATGGAG-AATACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCCCTGAAGGAATAGGGAGCAA-ACACGATTGTTG
* * * * *
593390 AAGATTTTTTGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGATTGTTG
* * *
593445 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTATTG
1 AAGATTGTTCGAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGATTGTTG
* * * *
593500 AAGATTGTTCAAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACATGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGATTGTTG
* * * * * * **
593555 AAG-TTGTTCGAGT-TCTATACTCCCTAAAGAAAGAGGGGGCAAACCCG-TGGGAAG
1 AAGATTGTTCGAGTCT-TATACTCCCTGAAGGAATAGGGAGCAAACACGAT-TGTTG
* * * * * * * **
593609 AAGA-TGTTCGAGT-TCCATACTCCCTAAAGAAAGAGGGAGCGAACTCG-TAGGAAG
1 AAGATTGTTCGAGTCT-TATACTCCCTGAAGGAATAGGGAGCAAACACGAT-TGTTG
* * * * *
593663 AAGA-TGTTCGAGT-TCTATACTCCCTGAAAGAA-AGTGGGAGCGAACCCGTTTGTAG
1 AAGATTGTTCGAGTCT-TATACTCCCTGAAGGAATA--GGGAGCAAACACGATTGTTG
*
593718 AAGATTGTTCGAGT-TCTATACTCCCTGAAGTG-ATAGGGAGCAAACTCG-TTGTTCAG
1 AAGATTGTTCGAGTCT-TATACTCCCTGAAG-GAATAGGGAGCAAACACGATTGTT--G
* * * **
593774 AAGATTGCTCGAGT-TCTATACTCCCTGAAGCG-ATAGGAAGCAAACTC-ATTTGCAG
1 AAGATTGTTCGAGTCT-TATACTCCCTGAAG-GAATAGGGAGCAAACACGA-TTGTTG
* * *
593829 AAGATTCTTCGAGATC-TATACTCCCTGAAGCAATAGGGAGCAAACTCG-TTGTTCAG
1 AAGATTGTTCGAG-TCTTATACTCCCTGAAGGAATAGGGAGCAAACACGATTGTT--G
* * * * **
593885 AAGATTGTTCGAGT-TCTATACTCCCTGAAGCAATAGGAAGCAAACTCGTTTGCAG
1 AAGATTGTTCGAGTCT-TATACTCCCTGAAGGAATAGGGAGCAAACACGATTGTTG
* * * *
593940 AAGATTCTTCAAGATC-TATACTCCCTGAAGCAATACGGAGC
1 AAGATTGTTCGAG-TCTTATACTCCCTGAAGGAATAGGGAGC
593981 GAACGCGTGT
Statistics
Matches: 658, Mismatches: 72, Indels: 52
0.84 0.09 0.07
Matches are distributed among these distances:
53 3 0.00
54 119 0.18
55 410 0.62
56 118 0.18
57 8 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (55 bp):
AAGATTGTTCGAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGATTGTTG
Found at i:601682 original size:15 final size:15
Alignment explanation
Indices: 601644--601682 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
601634 CTACATGGAG
601644 CGATGAAGAAGGTTC
1 CGATGAAGAAGGTTC
*
601659 TGATGAAGAAGGTTC
1 CGATGAAGAAGGTTC
*
601674 CGATAAAGA
1 CGATGAAGA
601683 GGAACAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.31, T:0.21
Consensus pattern (15 bp):
CGATGAAGAAGGTTC
Found at i:605709 original size:23 final size:22
Alignment explanation
Indices: 605667--605727 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 22
605657 ATAGGGCAGA
* *
605667 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTGAAG
605689 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC-TTGAAG
605712 GGGAACCGATTCCCCC
1 GGGAACCGATTCCCCC
605728 CAGGGGAATC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
22 14 0.39
23 22 0.61
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTGAAG
Found at i:608014 original size:22 final size:22
Alignment explanation
Indices: 607986--608211 Score: 302
Period size: 22 Copynumber: 10.5 Consensus size: 22
607976 ATTTTAAAAT
607986 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGGATTGA
608008 TTTATTTTAAAATAT--A---A
1 TTTATTTTAAAATATGGATTGA
*** **
608025 AAAACATTAAAATATGGATTGA
1 TTTATTTTAAAATATGGATTGA
**
608047 TTTATTTTAAAATATGGA-AAA
1 TTTATTTTAAAATATGGATTGA
* *
608068 ATTATTTTAAAATCTGGATTGA
1 TTTATTTTAAAATATGGATTGA
*
608090 TTTATTTTAAAATATGAATTGA
1 TTTATTTTAAAATATGGATTGA
608112 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGGATTGA
608134 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGGATTGA
* *
608156 TTTATTTTTAAATATGTATTGA
1 TTTATTTTAAAATATGGATTGA
608178 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGGATTGA
608200 TTTATTTTAAAA
1 TTTATTTTAAAA
608212 AATTTATTAT
Statistics
Matches: 174, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
17 11 0.06
19 1 0.01
20 1 0.01
21 17 0.10
22 144 0.83
ACGTcount: A:0.40, C:0.01, G:0.11, T:0.48
Consensus pattern (22 bp):
TTTATTTTAAAATATGGATTGA
Found at i:609812 original size:29 final size:29
Alignment explanation
Indices: 609780--609835 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
609770 AACAAGCATA
*
609780 ATTAAAAAAAAAGTTAAATACCTAATTAC
1 ATTAAAAAAAAACTTAAATACCTAATTAC
* *
609809 ATTAAAAAAAAACTTAGATTCCTAATT
1 ATTAAAAAAAAACTTAAATACCTAATT
609836 GTATCAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.30
Consensus pattern (29 bp):
ATTAAAAAAAAACTTAAATACCTAATTAC
Found at i:611195 original size:2 final size:2
Alignment explanation
Indices: 611184--611223 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
611174 GTTGGTCTCA
611184 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
611224 CTCAATTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:615404 original size:43 final size:44
Alignment explanation
Indices: 615347--615431 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 44
615337 TTTTAAAAAT
*
615347 TATTAATTTACTAATAGATAATAAAA-ATAATAAATTATTAATA
1 TATTAATTTACTAATAAATAATAAAATATAATAAATTATTAATA
* * * *
615390 TATTAGTTTTCTAATAAATAATAAAATATATTACATTATTAA
1 TATTAATTTACTAATAAATAATAAAATATAATAAATTATTAA
615432 CTAATTATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 23 0.64
44 13 0.36
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (44 bp):
TATTAATTTACTAATAAATAATAAAATATAATAAATTATTAATA
Found at i:616457 original size:2 final size:2
Alignment explanation
Indices: 616452--616487 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
616442 TTAAAAAATA
*
616452 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
616488 TTAAGATTCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:618317 original size:2 final size:2
Alignment explanation
Indices: 618310--618339 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
618300 TATAGACGTA
618310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
618340 TTTTTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:619561 original size:29 final size:28
Alignment explanation
Indices: 619517--619586 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 28
619507 GCTTTATTGA
* *
619517 GTCTCTCGACTATTAGAAGTTATAAAATG
1 GTCTC-CGACTATTAGAAATTACAAAATG
619546 GTCCTCCGACTATTAGAAATTACAAAATG
1 GT-CTCCGACTATTAGAAATTACAAAATG
619575 GTCTCCGACTAT
1 GTCTCCGACTAT
619587 AGAGTGTTGC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 10 0.26
29 25 0.66
30 3 0.08
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (28 bp):
GTCTCCGACTATTAGAAATTACAAAATG
Found at i:620086 original size:26 final size:26
Alignment explanation
Indices: 620033--620084 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
620023 ATATTTATTA
*
620033 TATCTGAAATTATATGTTAACATTTT
1 TATCTGAAATTATATGTTAAAATTTT
* *
620059 TATCTTAAATT-TATTTTAAAATTTT
1 TATCTGAAATTATATGTTAAAATTTT
620084 T
1 T
620085 TAATTATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.56
Consensus pattern (26 bp):
TATCTGAAATTATATGTTAAAATTTT
Found at i:622468 original size:4 final size:4
Alignment explanation
Indices: 622459--622491 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
622449 CCCATGACGC
622459 AAAG AAAG -AAG AAAG -AAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
622492 CAGAATTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 6 0.22
4 21 0.78
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:622472 original size:7 final size:7
Alignment explanation
Indices: 622460--622490 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
622450 CCATGACGCA
622460 AAGAAAG
1 AAGAAAG
622467 AAGAAAG
1 AAGAAAG
622474 AAGAAAG
1 AAGAAAG
622481 AAAGAAAG
1 -AAGAAAG
622489 AA
1 AA
622491 ACAGAATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (7 bp):
AAGAAAG
Found at i:623515 original size:4 final size:4
Alignment explanation
Indices: 623508--623538 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
623498 TGCATGCATG
623508 CATA CATA CATA CATA CATA CATA CATA CAT
1 CATA CATA CATA CATA CATA CATA CATA CAT
623539 GATTCAGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
CATA
Found at i:625182 original size:18 final size:18
Alignment explanation
Indices: 625159--625216 Score: 91
Period size: 18 Copynumber: 3.3 Consensus size: 18
625149 AAGGAGGGGT
625159 GGGAGAGAGTAGTAGTTA
1 GGGAGAGAGTAGTAGTTA
625177 GGGAGAGAGTAGTAGTTA
1 GGGAGAGAGTAGTAGTTA
* *
625195 GGGAG-GAGCAGTAGTCA
1 GGGAGAGAGTAGTAGTTA
625212 GGGAG
1 GGGAG
625217 GAGCAGATGG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
17 15 0.39
18 23 0.61
ACGTcount: A:0.31, C:0.03, G:0.48, T:0.17
Consensus pattern (18 bp):
GGGAGAGAGTAGTAGTTA
Found at i:625745 original size:23 final size:23
Alignment explanation
Indices: 625697--625783 Score: 104
Period size: 23 Copynumber: 3.8 Consensus size: 23
625687 CAAAAATGCA
* *
625697 AATGGGTACCGATACCCC-TATG
1 AATGGGTATCAATACCCCTTATG
*
625719 AATGAGTATCAATACCCCTTATG
1 AATGGGTATCAATACCCCTTATG
* *
625742 AATGGGTATGAATGCCCCTTATG
1 AATGGGTATCAATACCCCTTATG
* *
625765 AATGGGTACCGATACCCCT
1 AATGGGTATCAATACCCCT
625784 ATGGGTATCA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 15 0.28
23 39 0.72
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (23 bp):
AATGGGTATCAATACCCCTTATG
Found at i:625789 original size:18 final size:18
Alignment explanation
Indices: 625766--625819 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
625756 CCCCTTATGA
625766 ATGGGTACCGATACCCCT
1 ATGGGTACCGATACCCCT
* *
625784 ATGGGTATCAATA-CCC-
1 ATGGGTACCGATACCCCT
*
625800 -TGTGTACCGATACCCCT
1 ATGGGTACCGATACCCCT
625817 ATG
1 ATG
625820 ACTGGGTATC
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
15 9 0.32
16 3 0.11
17 3 0.11
18 13 0.46
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (18 bp):
ATGGGTACCGATACCCCT
Found at i:629454 original size:23 final size:23
Alignment explanation
Indices: 629375--629456 Score: 87
Period size: 23 Copynumber: 3.6 Consensus size: 23
629365 CACAGCAGAG
*
629375 TGCATCGATGCACATTCAAGGCA
1 TGCATCGATGCACATTCAAGGGA
* * *
629398 TGCATCGGGGTGCACCTTC-ATGG-
1 TGCATC--GATGCACATTCAAGGGA
*
629421 TGAATCGATGCACATTCAAGGGA
1 TGCATCGATGCACATTCAAGGGA
629444 TGCATCGATGCAC
1 TGCATCGATGCAC
629457 TAACTAGTGT
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
21 9 0.20
22 3 0.07
23 23 0.50
24 2 0.04
25 9 0.20
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (23 bp):
TGCATCGATGCACATTCAAGGGA
Found at i:637666 original size:23 final size:21
Alignment explanation
Indices: 637595--637668 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 21
637585 CAGGTGTATT
637595 GATGCACATTCAGGACGTGCATC
1 GATGCACATTCAGGA--TGCATC
* * *
637618 GGTGCACCTTCATGGAT-AATC
1 GATGCACATTCA-GGATGCATC
637639 GATGCACATTCAAGGGATGCATC
1 GATGCACATTC-A-GGATGCATC
637662 GATGCAC
1 GATGCAC
637669 TAATGAGTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
21 12 0.29
22 6 0.15
23 20 0.49
24 3 0.07
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (21 bp):
GATGCACATTCAGGATGCATC
Found at i:642955 original size:20 final size:22
Alignment explanation
Indices: 642917--642956 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
642907 GTTTTACAGA
642917 AAAATCATCCCCAAACGGCTTC
1 AAAATCATCCCCAAACGGCTTC
642939 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
642957 ATACACATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTTC
Found at i:645300 original size:18 final size:18
Alignment explanation
Indices: 645277--645335 Score: 82
Period size: 18 Copynumber: 3.1 Consensus size: 18
645267 TATATAATTG
645277 TTAACAATTGATATCTTT
1 TTAACAATTGATATCTTT
645295 TTAACAATTGATATCCTTT
1 TTAACAATTGATAT-CTTT
*
645314 TGTAAACAACTGATATCTTT
1 T-T-AACAATTGATATCTTT
645334 TT
1 TT
645336 CATTAAACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 14 0.38
19 6 0.16
20 6 0.16
21 11 0.30
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.47
Consensus pattern (18 bp):
TTAACAATTGATATCTTT
Found at i:645593 original size:23 final size:23
Alignment explanation
Indices: 645556--645620 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 23
645546 ATGGGTACTG
645556 ATACCCC-TATGAATGGGTATCA
1 ATACCCCTTATGAATGGGTATCA
*
645578 ATACCCCTTATGAATGAGTATCA
1 ATACCCCTTATGAATGGGTATCA
*
645601 ATACCCCTTATGAATTGGTA
1 ATACCCCTTATGAATGGGTA
645621 CTGATACCCC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 7 0.18
23 32 0.82
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (23 bp):
ATACCCCTTATGAATGGGTATCA
Found at i:645665 original size:33 final size:35
Alignment explanation
Indices: 645618--645684 Score: 93
Period size: 37 Copynumber: 1.9 Consensus size: 35
645608 TTATGAATTG
*
645618 GTACTGATACCCC-TA-TGGGTATCAATACCCTGT
1 GTACCGATACCCCTTACTGGGTATCAATACCCTGT
645651 GTACCGATACCCCTATTACTGGGTATCAATACCC
1 GTACCGATACCCC--TTACTGGGTATCAATACCC
645685 CTATGAAGGC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 12 0.41
36 2 0.07
37 15 0.52
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (35 bp):
GTACCGATACCCCTTACTGGGTATCAATACCCTGT
Found at i:646182 original size:33 final size:33
Alignment explanation
Indices: 646140--646209 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
646130 TTTTGTAAAG
* *
646140 GGGAAAGGTTCCAGCTGATCCCGTGAAAAGCTA
1 GGGAAAGGTTCCAGCTGAGCCCGTGAAAAACTA
* * *
646173 GGGAAAGGTTCTAGTTTAGCCCGTGAAAAACTA
1 GGGAAAGGTTCCAGCTGAGCCCGTGAAAAACTA
646206 GGGA
1 GGGA
646210 GTTGTAAAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.20
Consensus pattern (33 bp):
GGGAAAGGTTCCAGCTGAGCCCGTGAAAAACTA
Found at i:647810 original size:14 final size:14
Alignment explanation
Indices: 647791--647820 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
647781 ATTTTTAATT
647791 TCGAGTTATTCAAG
1 TCGAGTTATTCAAG
*
647805 TCGAGTTATTCGAG
1 TCGAGTTATTCAAG
647819 TC
1 TC
647821 AACTCGAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (14 bp):
TCGAGTTATTCAAG
Found at i:649663 original size:28 final size:28
Alignment explanation
Indices: 649632--649698 Score: 134
Period size: 28 Copynumber: 2.4 Consensus size: 28
649622 TCTTTCTGTG
649632 ACACACTTTATCCATTTGTTCCCTTCAA
1 ACACACTTTATCCATTTGTTCCCTTCAA
649660 ACACACTTTATCCATTTGTTCCCTTCAA
1 ACACACTTTATCCATTTGTTCCCTTCAA
649688 ACACACTTTAT
1 ACACACTTTAT
649699 GTTATCAATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.27, C:0.31, G:0.03, T:0.39
Consensus pattern (28 bp):
ACACACTTTATCCATTTGTTCCCTTCAA
Found at i:658071 original size:29 final size:30
Alignment explanation
Indices: 657998--658081 Score: 86
Period size: 29 Copynumber: 2.9 Consensus size: 30
657988 TTTGACCAGT
657998 GACTAAAA-TGTAAGTTTTG-AAAGTTTAGA
1 GACTAAAATTGTAA-TTTTGAAAAGTTTAGA
* * *
658027 GGCTAAAGTAT-AAATTTTGAAAAGTTTAG-
1 GACTAAAAT-TGTAATTTTGAAAAGTTTAGA
*
658056 GACTAAAATTGTAATTTTTAAAAGTT
1 GACTAAAATTGTAATTTTGAAAAGTT
658082 ATATATTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
28 1 0.02
29 31 0.70
30 11 0.25
31 1 0.02
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.37
Consensus pattern (30 bp):
GACTAAAATTGTAATTTTGAAAAGTTTAGA
Found at i:673428 original size:12 final size:12
Alignment explanation
Indices: 673411--673436 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
673401 TACTAGGGAA
673411 ATGTTCTTGGAG
1 ATGTTCTTGGAG
673423 ATGTTCTTGGAG
1 ATGTTCTTGGAG
673435 AT
1 AT
673437 TTGTTAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (12 bp):
ATGTTCTTGGAG
Found at i:683327 original size:16 final size:15
Alignment explanation
Indices: 683295--683332 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
683285 GATTAGGGTT
683295 AGGAATTTAAGTTTA
1 AGGAATTTAAGTTTA
683310 A-GAATTTATAGATTTA
1 AGGAATTTA-AG-TTTA
683326 AGGAATT
1 AGGAATT
683333 GAGAAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 7 0.35
15 3 0.15
16 5 0.25
17 5 0.25
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.39
Consensus pattern (15 bp):
AGGAATTTAAGTTTA
Found at i:696379 original size:10 final size:10
Alignment explanation
Indices: 696364--696400 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
696354 GAGTCTTGTA
696364 ATAATAATAT
1 ATAATAATAT
696374 ATAATAATAT
1 ATAATAATAT
*
696384 -T-ATTATAT
1 ATAATAATAT
696392 ATAATAATA
1 ATAATAATA
696401 CAATATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
8 6 0.26
9 2 0.09
10 15 0.65
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
ATAATAATAT
Found at i:696800 original size:97 final size:89
Alignment explanation
Indices: 696638--696935 Score: 259
Period size: 97 Copynumber: 3.2 Consensus size: 89
696628 AAATGATTTG
** *
696638 CTTCACTACTCTTTTGTGAAGGTTGAAT--TTAAC-TGAGAAGAATTTGTTTCACTACTCTTCTA
1 CTTCACTACTCTTTCATGAAGGTTGAATGATTGACTTGAGAAGAA--TGTTTCACTACTCTTCTA
696700 TGAAGATCAGATTCGAGGTTCGCTTGAATTA
64 TGAAGATCAGATTCGAGGTT-G---GAA-TA
* *
696731 CTTCACTACTCTTACATGAAGGTTGAATTGATTGACTTGAGAAGAACCTGTTTCACTACTCTTCC
1 CTTCACTACTCTTTCATGAAGGTTGAA-TGATTGACTTGAGAAGAA--TGTTTCACTACTCTTCT
* * *
696796 ATGAAGATTAGATTCGAAGTTGGGATA
63 ATGAAGATCAGATTCGAGGTTGGAATA
* * * *
696823 CTTCACTACTTTTTCGA-GAAGGCTGAAAATGATTGACTTGA-ACAGAATATTTCACTACTCTTT
1 CTTCACTACTCTTTC-ATGAAGGTTG--AATGATTGACTTGAGA-AGAATGTTTCACTACTCTTC
* * *
696886 TATGATGGTCAGATTCGAGGTT-GATTTA
62 TATGAAGATCAGATTCGAGGTTGGA-ATA
696914 CTTCCACTACT-TTTCCATGAAG
1 CTT-CACTACTCTTT-CATGAAG
696936 AGTTCTTACA
Statistics
Matches: 171, Mismatches: 22, Indels: 25
0.78 0.10 0.11
Matches are distributed among these distances:
90 1 0.01
91 40 0.23
92 35 0.20
93 43 0.25
94 3 0.02
96 5 0.03
97 44 0.26
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (89 bp):
CTTCACTACTCTTTCATGAAGGTTGAATGATTGACTTGAGAAGAATGTTTCACTACTCTTCTATG
AAGATCAGATTCGAGGTTGGAATA
Found at i:696928 original size:91 final size:90
Alignment explanation
Indices: 696684--696935 Score: 242
Period size: 91 Copynumber: 2.7 Consensus size: 90
696674 GAAGAATTTG
*
696684 TTTCACTACTCTTCTATGAAGATCAGATTCGAGGTTCGCTTGAATTACTTCACTACTCTTACATG
1 TTTCACTACTCTTCTATGAAGATCAGATTCGA-G---G-TTGAATTACTTCACTACT-TTTCATG
* * *
696749 AAGGTTGAATTGATTGACTTGAGAAGAACCTG
60 AAGGCTGAAATGATTGACTTGAGAAGAA-CTA
* * * *
696781 TTTCACTACTCTTCCATGAAGATTAGATTCGAAGTTGGGA-TACTTCACTACTTTTTCGA-GAAG
1 TTTCACTACTCTTCTATGAAGATCAGATTCGAGGTT-GAATTACTTCACTAC-TTTTC-ATGAAG
696844 GCTGAAAATGATTGACTTGA-ACAGAA-TA
63 GCTG-AAATGATTGACTTGAGA-AGAACTA
* * * *
696872 TTTCACTACTCTTTTATGATGGTCAGATTCGAGGTTGATTTACTTCCACTACTTTTCCATGAAG
1 TTTCACTACTCTTCTATGAAGATCAGATTCGAGGTTGAATTACTT-CACTACTTTT-CATGAAG
696936 AGTTCTTACA
Statistics
Matches: 130, Mismatches: 16, Indels: 23
0.77 0.09 0.14
Matches are distributed among these distances:
90 1 0.01
91 41 0.32
92 35 0.27
93 23 0.18
97 30 0.23
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (90 bp):
TTTCACTACTCTTCTATGAAGATCAGATTCGAGGTTGAATTACTTCACTACTTTTCATGAAGGCT
GAAATGATTGACTTGAGAAGAACTA
Found at i:697035 original size:38 final size:38
Alignment explanation
Indices: 696993--697068 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
696983 AATAGATGAC
*
696993 CCGAAGGATTTACAAATTACCCGAAGGCTTTACAAATA
1 CCGAAGGATTTACAAATGACCCGAAGGCTTTACAAATA
* * *
697031 CCGAAGGCTTTACAAATGACCCGGAGGCTTTATAAATA
1 CCGAAGGATTTACAAATGACCCGAAGGCTTTACAAATA
697069 ACCTGGAGGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (38 bp):
CCGAAGGATTTACAAATGACCCGAAGGCTTTACAAATA
Found at i:697036 original size:18 final size:19
Alignment explanation
Indices: 696991--697068 Score: 104
Period size: 20 Copynumber: 4.1 Consensus size: 19
696981 CTAATAGATG
*
696991 ACCCGAAGGATTTACAAATT
1 ACCCGAAGGCTTTACAAA-T
697011 ACCCGAAGGCTTTACAAAT
1 ACCCGAAGGCTTTACAAAT
697030 A-CCGAAGGCTTTACAAAT
1 ACCCGAAGGCTTTACAAAT
* *
697048 GACCCGGAGGCTTTATAAAT
1 -ACCCGAAGGCTTTACAAAT
697068 A
1 A
697069 ACCTGGAGGC
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
18 17 0.32
19 4 0.08
20 32 0.60
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (19 bp):
ACCCGAAGGCTTTACAAAT
Found at i:697076 original size:20 final size:18
Alignment explanation
Indices: 697001--697080 Score: 79
Period size: 20 Copynumber: 4.1 Consensus size: 18
696991 ACCCGAAGGA
*
697001 TTTACAAATTACCCGAAGGC
1 TTTACAAA-TA-CCGGAGGC
*
697021 TTTACAAATACCGAAGGC
1 TTTACAAATACCGGAGGC
697039 TTTACAAATGACCCGGAGGC
1 TTTACAAAT-A-CCGGAGGC
*
697059 TTTATAAATAACCTGGAGGC
1 TTTACAAAT-ACC-GGAGGC
697079 TT
1 TT
697081 GACCCGAATG
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.31
19 5 0.09
20 32 0.59
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (18 bp):
TTTACAAATACCGGAGGC
Found at i:700201 original size:21 final size:21
Alignment explanation
Indices: 700177--700292 Score: 103
Period size: 21 Copynumber: 5.4 Consensus size: 21
700167 CACTGAAGTG
700177 CCACATAATTATCCCGAAGGA
1 CCACATAATTATCCCGAAGGA
* *
700198 CCACATAATTTTGCACCGAAGTA
1 CCACATAATTAT-C-CCGAAGGA
* *
700221 CCATATAGGTT-TGCACCGAAGTG-
1 CCACATA-ATTAT-C-CCGAAG-GA
*
700244 CCACAT-ATTATCTCGAAGGA
1 CCACATAATTATCCCGAAGGA
700264 CCACATAATTATCCCGAAGGA
1 CCACATAATTATCCCGAAGGA
*
700285 CCATATAA
1 CCACATAA
700293 CCCTCGACTA
Statistics
Matches: 78, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.01
20 11 0.14
21 34 0.44
22 2 0.03
23 28 0.36
24 2 0.03
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (21 bp):
CCACATAATTATCCCGAAGGA
Found at i:700223 original size:23 final size:23
Alignment explanation
Indices: 700163--700250 Score: 90
Period size: 23 Copynumber: 3.9 Consensus size: 23
700153 CAACTCGTAA
* *
700163 TTTGCACTGAAGTGCCACATAAT
1 TTTGCACCGAAGTACCACATAAT
* *
700186 TAT-C-CCGAAGGACCACATAAT
1 TTTGCACCGAAGTACCACATAAT
* **
700207 TTTGCACCGAAGTACCATATAGG
1 TTTGCACCGAAGTACCACATAAT
*
700230 TTTGCACCGAAGTGCCACATA
1 TTTGCACCGAAGTACCACATA
700251 TTATCTCGAA
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
21 16 0.31
22 2 0.04
23 34 0.65
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (23 bp):
TTTGCACCGAAGTACCACATAAT
Found at i:704149 original size:154 final size:154
Alignment explanation
Indices: 703936--704244 Score: 602
Period size: 155 Copynumber: 2.0 Consensus size: 154
703926 ACCAAAAATA
703936 GTAGCAAAACCCAATCATTTACGGAAAGAAAATATGGTTCCAAAGAGAGGGCTGCTGCAAAAACA
1 GTAGCAAAACCCAATCATTTACGGAAAGAAAATATGGTTCCAAAGAGAGGGCTGCTGCAAAAACA
704001 ATTGGAAA-TTTGAGCTTAATTTGGAAACTTTTTTATCATTGAGAATCTGCTCCTAGATTTTCAT
66 ATTGGAAATTTTGAGCTTAATTTGGAAACTTTTTTATCATTGAGAATCTGCTCCTAGATTTTCAT
704065 CTCCACTATCACTGCCTTGATTTT
131 CTCCACTATCACTGCCTTGATTTT
704089 GTAGCAAAACCCAATCATTTACGGAAAGAAAAATATGGTTCCAAAGAGAGGGCTGCTGCAAAAAC
1 GTAGCAAAACCCAATCATTTACGGAAAG-AAAATATGGTTCCAAAGAGAGGGCTGCTGCAAAAAC
704154 AATTGGAAATTTTGAGCTTAATTTGGAAACTTTTTTATCATTGAGAATCTGCTCCTAGATTTTCA
65 AATTGGAAATTTTGAGCTTAATTTGGAAACTTTTTTATCATTGAGAATCTGCTCCTAGATTTTCA
704219 TCTCCACTATCACTGCCTTGATTTT
130 TCTCCACTATCACTGCCTTGATTTT
704244 G
1 G
704245 GTTTTCTTGG
Statistics
Matches: 154, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
153 28 0.18
154 45 0.29
155 81 0.53
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (154 bp):
GTAGCAAAACCCAATCATTTACGGAAAGAAAATATGGTTCCAAAGAGAGGGCTGCTGCAAAAACA
ATTGGAAATTTTGAGCTTAATTTGGAAACTTTTTTATCATTGAGAATCTGCTCCTAGATTTTCAT
CTCCACTATCACTGCCTTGATTTT
Found at i:721741 original size:13 final size:13
Alignment explanation
Indices: 721705--721744 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
721695 GGGTAAATAG
*
721705 TTAATTAAATTAT
1 TTAATTATATTAT
*
721718 TTACTTTATATTAT
1 TTA-ATTATATTAT
721732 TTAATTATATTAT
1 TTAATTATATTAT
721745 AAATTTCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (13 bp):
TTAATTATATTAT
Found at i:724014 original size:620 final size:620
Alignment explanation
Indices: 722819--724070 Score: 2159
Period size: 620 Copynumber: 2.0 Consensus size: 620
722809 ATAGTTTGAA
* *
722819 ATCAAATGAATACGGGGTAAATAGTTAATTAAATTGTTTACTTTATATTATTTAATTATATTGTA
1 ATCAAATAAATACGGGGTAAATAGTTAATTAAATTATTTACTTTATATTATTTAATTATATTGTA
722884 AATTTCGATGTAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACA
66 AATTTCGATGTAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACA
* *
722949 TGTACTCCTACATTACAACAATTAGCAATTAAAGTGCTTAGTCAAACAACTTCTGCATCAAATTG
131 TGTACTCCTAAATTACAACAATTAGCAATTAAAGTGCTTAGTCAAACAACTTCTGCATCAAATTA
*
723014 CGAACGAAACTGGAGCACATTCAGCTATATTCACACCTAATCGAGAAACAATTGAAATACAATAA
196 CGAACGAAACGGGAGCACATTCAGCTATATTCACACCTAATCGAGAAACAATTGAAATACAATAA
*
723079 ATTTGAGAAACTAGTGTTTGCTTATTACAATATAAGGCTTAAAATGAGGCATCAACAAATAATGA
261 AATTGAGAAACTAGTGTTTGCTTATTACAATATAAGGCTTAAAATGAGGCATCAACAAATAATGA
* *
723144 GAATTGGTAATATAAACGCTATTTACAATCCTATCAGTTTTTATCATATCTTTAAAGAAGTTGAT
326 GAATTGATAATATAAACGCTATTTACAATCCTATCAGTCTTTATCATATCTTTAAAGAAGTTGAT
* *
723209 TCACTATCAAAATGAATTTAAGAGAATGAGTGTCCATTGTTAGATGGTGAAAATGACGGTGTGTT
391 TCACTATCAAAATGAATTTAAGAGAATAAGTGTCCATTGTTAGATGGTGAAAATAACGGTGTGTT
723274 CCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATCTCAACAAAAATACTTATCTC
456 CCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATCTCAACAAAAATA-TTATCTC
* *
723339 ATTCAAGTTCTAGTGCAATGCTAAGTAAAATTGGTGATGGGCTAGATGGTGGTGGTTTAACTCCA
520 ATTCAAGTTCTAGTGCAACGCCAAGTAAAATTGGTGATGGGCTAGATGGTGGTGGTTTAACTCCA
* * *
723404 ATTGATGAGGGTGATATACAGAGTGGTAATGGAGGC
585 ATTGATGAGGATAATAGACAGAGTGGTAATGGAGGC
* *
723440 ATCAAATAAATAC-TGGTAAATAGTTAATTAATTTATTTACTTTATATTATTTAATTATATTGTA
1 ATCAAATAAATACGGGGTAAATAGTTAATTAAATTATTTACTTTATATTATTTAATTATATTGTA
723504 AATTTCGATGTAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACA
66 AATTTCGATGTAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACA
* *
723569 TGTACTCCTAAATTACAACAATTAGCAGTTAATGTGCTTAGTCAAACAACTTCTGCATCAAATTA
131 TGTACTCCTAAATTACAACAATTAGCAATTAAAGTGCTTAGTCAAACAACTTCTGCATCAAATTA
**
723634 CGAACGAAACGGGAGCACATTCAGCTATATTCGTACCTAATCGAGAAACAATTGAAATACAATAA
196 CGAACGAAACGGGAGCACATTCAGCTATATTCACACCTAATCGAGAAACAATTGAAATACAATAA
* *
723699 AATTGAGAAACTAGTGTTTGCTTATTACAATATAAGGCTTAATATGAGGCATCAATAAATAATGA
261 AATTGAGAAACTAGTGTTTGCTTATTACAATATAAGGCTTAAAATGAGGCATCAACAAATAATGA
* *
723764 GAATTGATAATATAAACGCTATTTACAATCCTATCAGTCTTTATCATATCTTTGAAGAAGTTTAT
326 GAATTGATAATATAAACGCTATTTACAATCCTATCAGTCTTTATCATATCTTTAAAGAAGTTGAT
* *
723829 TCACTATCAAATTGACTTTAAGAGAATAAGTGTCCATTGTTAGATGGTGAAAATAACGGTGTGTT
391 TCACTATCAAAATGAATTTAAGAGAATAAGTGTCCATTGTTAGATGGTGAAAATAACGGTGTGTT
* * *
723894 GCCTGTGGATACATCAGATGATGAAATGAATTTTGATGATCAATCTCAACGACAAAAT-TTATCT
456 CCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATCTCAAC-A-AAAATATTATCT
* * *
723958 CATTCAAGTTCTAGTGCAACGCCAAGTAAAATTGGTGATGGGCTCGATTGTGGTGGTTTAAGTCC
519 CATTCAAGTTCTAGTGCAACGCCAAGTAAAATTGGTGATGGGCTAGATGGTGGTGGTTTAACTCC
724023 AATTGATGAGGATAATAGACAGAGTGGTAATGGAGGC
584 AATTGATGAGGATAATAGACAGAGTGGTAATGGAGGC
724060 ATC-AATAAATA
1 ATCAAATAAATA
724071 ATGAGAATTG
Statistics
Matches: 596, Mismatches: 33, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
619 8 0.01
620 570 0.96
621 13 0.02
622 5 0.01
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (620 bp):
ATCAAATAAATACGGGGTAAATAGTTAATTAAATTATTTACTTTATATTATTTAATTATATTGTA
AATTTCGATGTAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACA
TGTACTCCTAAATTACAACAATTAGCAATTAAAGTGCTTAGTCAAACAACTTCTGCATCAAATTA
CGAACGAAACGGGAGCACATTCAGCTATATTCACACCTAATCGAGAAACAATTGAAATACAATAA
AATTGAGAAACTAGTGTTTGCTTATTACAATATAAGGCTTAAAATGAGGCATCAACAAATAATGA
GAATTGATAATATAAACGCTATTTACAATCCTATCAGTCTTTATCATATCTTTAAAGAAGTTGAT
TCACTATCAAAATGAATTTAAGAGAATAAGTGTCCATTGTTAGATGGTGAAAATAACGGTGTGTT
CCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATCTCAACAAAAATATTATCTCA
TTCAAGTTCTAGTGCAACGCCAAGTAAAATTGGTGATGGGCTAGATGGTGGTGGTTTAACTCCAA
TTGATGAGGATAATAGACAGAGTGGTAATGGAGGC
Found at i:724307 original size:311 final size:311
Alignment explanation
Indices: 723744--724382 Score: 1091
Period size: 311 Copynumber: 2.1 Consensus size: 311
723734 GGCTTAATAT
723744 GAGGCATCAATAAATAATGAGAATTGATAATATAAACGCTATTTACAATCCTATCAGTCTTTATC
1 GAGGCATCAATAAATAATGAGAATTGATAATATAAACGCTATTTACAATCCTATCAGTCTTTATC
* * **
723809 ATATCTTTGAAGAAGTTTATTCACTATCAAATTGACTTTAAGAGAATAAGTGTCCATTGTTAGAT
66 ATATCTTTAAAGAAGTTGATTCACTATCAAAAAGACTTTAAGAGAATAAGTGTCCATTGTTAGAT
* * *
723874 GGTGAAAATAACGGTGTGTTGCCTGTGGATACATCAGATGATGAAATGAATTTTGATGATCAATC
131 GGTGAAAATAACGGTGTGTTCCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATC
* *
723939 TCAACGACAAAATTTATCTCATTCAAGTTCTAGTGCAACGCCAAGTAAAATTGGTGATGGGCTCG
196 TCAACGAAAAAATTTATCTCATTCAAGTTCTAGTGCAACGCCAAGTAAAATTGGTGATGGGCTAG
*
724004 ATTGTGGTGGTTTAAGTCCAATTGATGAGGATAATAGACAGAGTGGTAATG
261 ATGGTGGTGGTTTAAGTCCAATTGATGAGGATAATAGACAGAGTGGTAATG
*
724055 GAGGCATCAATAAATAATGAGAATTGATAATATAAACGCTATTTACAATCCTATCAGTTTTTATC
1 GAGGCATCAATAAATAATGAGAATTGATAATATAAACGCTATTTACAATCCTATCAGTCTTTATC
*
724120 ATATCTTTAAAGAAGTTGATTCACTATCAAAAAGACTTTAAGAGAATGAGTGTCCATTGTTAGAT
66 ATATCTTTAAAGAAGTTGATTCACTATCAAAAAGACTTTAAGAGAATAAGTGTCCATTGTTAGAT
*
724185 GGTGAAAATGACGGTGTGTTCCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATC
131 GGTGAAAATAACGGTGTGTTCCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATC
* *
724250 TCAAC-AAAACAATTTATCTCATTCAAGTTCTAGTGCAATGCCAAGTCAAATTGGTGATGGGCTA
196 TCAACGAAAA-AATTTATCTCATTCAAGTTCTAGTGCAACGCCAAGTAAAATTGGTGATGGGCTA
* * *
724314 GATGGTGGTGGTTTAAGTCCAATTGATGAGGGTGATATACAGAGTGGTAATG
260 GATGGTGGTGGTTTAAGTCCAATTGATGAGGATAATAGACAGAGTGGTAATG
724366 GAGGCATCAAATAAATA
1 GAGGCATC-AATAAATA
724383 CGGGTAAATA
Statistics
Matches: 308, Mismatches: 18, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
310 3 0.01
311 297 0.96
312 8 0.03
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (311 bp):
GAGGCATCAATAAATAATGAGAATTGATAATATAAACGCTATTTACAATCCTATCAGTCTTTATC
ATATCTTTAAAGAAGTTGATTCACTATCAAAAAGACTTTAAGAGAATAAGTGTCCATTGTTAGAT
GGTGAAAATAACGGTGTGTTCCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATC
TCAACGAAAAAATTTATCTCATTCAAGTTCTAGTGCAACGCCAAGTAAAATTGGTGATGGGCTAG
ATGGTGGTGGTTTAAGTCCAATTGATGAGGATAATAGACAGAGTGGTAATG
Found at i:724926 original size:931 final size:931
Alignment explanation
Indices: 723124--725002 Score: 3402
Period size: 931 Copynumber: 2.0 Consensus size: 931
723114 GGCTTAAAAT
* *
723124 GAGGCATCAACAAATAATGAGAATTGGTAATATAAACGCTATTTACAATCCTATCAGTTTTTATC
1 GAGGCATCAATAAATAATGAGAATTGATAATATAAACGCTATTTACAATCCTATCAGTTTTTATC
*
723189 ATATCTTTAAAGAAGTTGATTCACTATCAAAATGAATTTAAGAGAATGAGTGTCCATTGTTAGAT
66 ATATCTTTAAAGAAGTTGATTCACTATCAAAAAGAATTTAAGAGAATGAGTGTCCATTGTTAGAT
723254 GGTGAAAATGACGGTGTGTTCCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATC
131 GGTGAAAATGACGGTGTGTTCCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATC
*
723319 TCAACAAAAATACTTATCTCATTCAAGTTCTAGTGCAATGCTAAGTAAAATTGGTGATGGGCTAG
196 TCAACAAAAATACTTATCTCATTCAAGTTCTAGTGCAATGCCAAGTAAAATTGGTGATGGGCTAG
723384 ATGGTGGTGGTTTAACTCCAATTGATGAGGGTGATATACAGAGTGGTAATGGAGGCATCAAATAA
261 ATGGTGGTGGTTTAACTCCAATTGATGAGGGTGATATACAGAGTGGTAATGGAGGCATCAAATAA
* *
723449 ATACTGGTAAATAGTTAATTAATTTATTTACTTTATATTATTTAATTATATTGTAAATTTCGATG
326 ATACGGGTAAATAGTTAATTAAATTATTTACTTTATATTATTTAATTATATTGTAAATTTCGATG
723514 TAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACATGTACTCCTA
391 TAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACATGTACTCCTA
* * *
723579 AATTACAACAATTAGCAGTTAATGTGCTTAGTCAAACAACTTCTGCATCAAATTACGAACGAAAC
456 AATTACAACAATTAGCAATTAAAGTGCTTAGTCAAACAACTTCTGCAGCAAATTACGAACGAAAC
**
723644 GGGAGCACATTCAGCTATATTCGTACCTAATCGAGAAACAATTGAAATACAATAAAATTGAGAAA
521 GGGAGCACATTCAGCTATATTCACACCTAATCGAGAAACAATTGAAATACAATAAAATTGAGAAA
*
723709 CTAGTGTTTGCTTATTACAATATAAGGCTTAATATGAGGCATCAATAAATAATGAGAATTGATAA
586 CTAGTGTTTGCTTATAACAATATAAGGCTTAATATGAGGCATCAATAAATAATGAGAATTGATAA
*
723774 TATAAACGCTATTTACAATCCTATCAGTCTTTATCATATCTTTGAAGAAGTTTATTCACTATCAA
651 TATAAACGCTATTTACAATCCTATCAGTCTTTATCATATCTTTGAAGAAGTTGATTCACTATCAA
* *
723839 ATTGACTTTAAGAGAATAAGTGTCCATTGTTAGATGGTGAAAATAACGGTGTGTTGCCTGTGGAT
716 AATGACTTTAAGAGAATAAGTGTCCATTGTTAGATGGTGAAAATAACGGTGTGTTCCCTGTGGAT
* * *
723904 ACATCAGATGATGAAATGAATTTTGATGATCAATCTCAACGACAAAATTTATCTCATTCAAGTTC
781 ACATAAGATGATGAAATGAATGTTGATGATCAATCTCAACAACAAAATTTATCTCATTCAAGTTC
* *
723969 TAGTGCAACGCCAAGTAAAATTGGTGATGGGCTCGATTGTGGTGGTTTAAGTCCAATTGATGAGG
846 TAGTGCAACGCCAAGTAAAATTGGTGATGGGCTAGATGGTGGTGGTTTAAGTCCAATTGATGAGG
*
724034 ATAATAGACAGAGTGGTAATG
911 ATAATAGACAAAGTGGTAATG
724055 GAGGCATCAATAAATAATGAGAATTGATAATATAAACGCTATTTACAATCCTATCAGTTTTTATC
1 GAGGCATCAATAAATAATGAGAATTGATAATATAAACGCTATTTACAATCCTATCAGTTTTTATC
*
724120 ATATCTTTAAAGAAGTTGATTCACTATCAAAAAGACTTTAAGAGAATGAGTGTCCATTGTTAGAT
66 ATATCTTTAAAGAAGTTGATTCACTATCAAAAAGAATTTAAGAGAATGAGTGTCCATTGTTAGAT
724185 GGTGAAAATGACGGTGTGTTCCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATC
131 GGTGAAAATGACGGTGTGTTCCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATC
* *
724250 TCAACAAAACA-ATTTATCTCATTCAAGTTCTAGTGCAATGCCAAGTCAAATTGGTGATGGGCTA
196 TCAACAAAA-ATACTTATCTCATTCAAGTTCTAGTGCAATGCCAAGTAAAATTGGTGATGGGCTA
*
724314 GATGGTGGTGGTTTAAGTCCAATTGATGAGGGTGATATACAGAGTGGTAATGGAGGCATCAAATA
260 GATGGTGGTGGTTTAACTCCAATTGATGAGGGTGATATACAGAGTGGTAATGGAGGCATCAAATA
724379 AATACGGGTAAATAGTTAATTAAATTATTTACTTTATATTATTTAATTATATTGTAAATTTCGAT
325 AATACGGGTAAATAGTTAATTAAATTATTTACTTTATATTATTTAATTATATTGTAAATTTCGAT
724444 GTAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACATGTACTCCT
390 GTAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACATGTACTCCT
*
724509 AAATTACAACAATTAGCAATTAAAGTGCTTAGTCAAACAACTTCTGCAGCAAATTGCGAACGAAA
455 AAATTACAACAATTAGCAATTAAAGTGCTTAGTCAAACAACTTCTGCAGCAAATTACGAACGAAA
*
724574 CTGGAGCACATTCAGCTATATTCACACCTAATCGAGAAACAATTGAAATACAATAAAATTGAGAA
520 CGGGAGCACATTCAGCTATATTCACACCTAATCGAGAAACAATTGAAATACAATAAAATTGAGAA
724639 ACTAGTGTTTGCTTATAACAATATAAGGCTTAATATGAGGCATCAATAAATAATGAGAATTGATA
585 ACTAGTGTTTGCTTATAACAATATAAGGCTTAATATGAGGCATCAATAAATAATGAGAATTGATA
*
724704 ATATAAACGCTATTTACAATCCTATCAGTCTTTATCATATCTTTGAAGAGGTTGATTCACTATCA
650 ATATAAACGCTATTTACAATCCTATCAGTCTTTATCATATCTTTGAAGAAGTTGATTCACTATCA
**
724769 AAATGACTTTAAGAGAA-AGAGTGTCCATTGTTAGATGGTGAAAATGGCGGTGTGTTCCCTGTGG
715 AAATGACTTTAAGAGAATA-AGTGTCCATTGTTAGATGGTGAAAATAACGGTGTGTTCCCTGTGG
724833 ATACATAAGATGATGAAATGAATGTTGATGATCAATCTCAACAACAAAATTTATCTCATTCAAGT
779 ATACATAAGATGATGAAATGAATGTTGATGATCAATCTCAACAACAAAATTTATCTCATTCAAGT
* *
724898 TCTAGTGCAATGCCAAGTCAAATTGGTGATGGGCTAGATGGTGGTGGTTTAAGTCCAATTGATGA
844 TCTAGTGCAACGCCAAGTAAAATTGGTGATGGGCTAGATGGTGGTGGTTTAAGTCCAATTGATGA
* * *
724963 GGGTGATATACAAAGTGGTAATG
909 GGATAATAGACAAAGTGGTAATG
724986 GAGGCATCAAATAAATA
1 GAGGCATC-AATAAATA
725003 CGACACATGC
Statistics
Matches: 910, Mismatches: 35, Indels: 5
0.96 0.04 0.01
Matches are distributed among these distances:
930 1 0.00
931 900 0.99
932 9 0.01
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (931 bp):
GAGGCATCAATAAATAATGAGAATTGATAATATAAACGCTATTTACAATCCTATCAGTTTTTATC
ATATCTTTAAAGAAGTTGATTCACTATCAAAAAGAATTTAAGAGAATGAGTGTCCATTGTTAGAT
GGTGAAAATGACGGTGTGTTCCCTGTGGATACATAAGATGATGAAATGAATGTTGATGATCAATC
TCAACAAAAATACTTATCTCATTCAAGTTCTAGTGCAATGCCAAGTAAAATTGGTGATGGGCTAG
ATGGTGGTGGTTTAACTCCAATTGATGAGGGTGATATACAGAGTGGTAATGGAGGCATCAAATAA
ATACGGGTAAATAGTTAATTAAATTATTTACTTTATATTATTTAATTATATTGTAAATTTCGATG
TAAGTTTGAAATTTAATAATATTATGCAGTTAAGTGGTGGATGATATATGACACATGTACTCCTA
AATTACAACAATTAGCAATTAAAGTGCTTAGTCAAACAACTTCTGCAGCAAATTACGAACGAAAC
GGGAGCACATTCAGCTATATTCACACCTAATCGAGAAACAATTGAAATACAATAAAATTGAGAAA
CTAGTGTTTGCTTATAACAATATAAGGCTTAATATGAGGCATCAATAAATAATGAGAATTGATAA
TATAAACGCTATTTACAATCCTATCAGTCTTTATCATATCTTTGAAGAAGTTGATTCACTATCAA
AATGACTTTAAGAGAATAAGTGTCCATTGTTAGATGGTGAAAATAACGGTGTGTTCCCTGTGGAT
ACATAAGATGATGAAATGAATGTTGATGATCAATCTCAACAACAAAATTTATCTCATTCAAGTTC
TAGTGCAACGCCAAGTAAAATTGGTGATGGGCTAGATGGTGGTGGTTTAAGTCCAATTGATGAGG
ATAATAGACAAAGTGGTAATG
Found at i:725120 original size:13 final size:13
Alignment explanation
Indices: 725084--725123 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
725074 GGGTAAGTAG
*
725084 TTAATTAAATTAT
1 TTAATTATATTAT
*
725097 TTATTTTATATTAT
1 TTA-ATTATATTAT
725111 TTAATTATATTAT
1 TTAATTATATTAT
725124 AAATTTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTAATTATATTAT
Found at i:731082 original size:3 final size:3
Alignment explanation
Indices: 731074--731141 Score: 73
Period size: 3 Copynumber: 22.0 Consensus size: 3
731064 TCATTTAAAT
** * * *
731074 TTA TTA TTA TTA TTA AAA TTT TTA TTA TTA GTA TTA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
731122 TTA TTA TATA TTA TTTA TTA
1 TTA TTA T-TA TTA -TTA TTA
731142 AATATTACAA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
3 47 0.89
4 6 0.11
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:732833 original size:126 final size:118
Alignment explanation
Indices: 732703--733071 Score: 315
Period size: 126 Copynumber: 3.1 Consensus size: 118
732693 TTTCCTATTT
*
732703 ATAAATTTAATTTTATAAATTACTTTTAAGAAAAATAATCATATTTTGATATTTATTTATTTTTA
1 ATAAA-TT-ATTTTATAAATTA-TTTTAA-AATAA-AAT-AT-TTTTGATATTTATTTATTTTTA
* *
732768 ATATCGAAGAAAAGAGCTGTCTTAAGGCACCTAAAAGCCATTTTCTGATATTTTTAAATAA
59 ATATCAAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGCC-TTTTCTGATATTTTTAAATAA
* * ** * * * *
732829 ATAAATATCTTATTAAAATAAATTTTTATTTTAAGAAAATGTTTTGGTTATTTATTTATTTTTCA
1 ATAAAT-TATT-TT---ATAAATTATT-TTAAAATAAAATATTTTTGATATTTATTTATTTTT-A
* * * * *
732894 ATATCAAAGAAAAGAGCTTTCTTAAGGTACTTAGAAGCTCTTTTCTAATATTTTTGAATAA
59 ATATCAAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGC-CTTTTCTGATATTTTTAAATAA
* * *
732955 ATAAA-TATCTTACT--A-TA--TTAAAATAAAATGTTTTTGATATTTA--T-TTTTAAATATCA
1 ATAAATTATTTTA-TAAATTATTTTAAAATAAAATATTTTTGATATTTATTTATTTTTAATATCA
* *
733011 AAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTGATATTTCTAAATAA
65 AAGAAAAGAGCTGTCTTAAGGCACCTAGAAG-CCTTTTCTGATATTTTTAAATAA
*
733066 GTAAAT
1 ATAAAT
733072 ATCTTATTTA
Statistics
Matches: 200, Mismatches: 32, Indels: 36
0.75 0.12 0.13
Matches are distributed among these distances:
111 57 0.28
112 5 0.03
113 1 0.00
115 21 0.10
118 1 0.00
119 1 0.00
120 1 0.00
121 1 0.00
123 2 0.01
124 2 0.01
125 22 0.11
126 67 0.34
127 4 0.02
128 6 0.03
129 9 0.05
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (118 bp):
ATAAATTATTTTATAAATTATTTTAAAATAAAATATTTTTGATATTTATTTATTTTTAATATCAA
AGAAAAGAGCTGTCTTAAGGCACCTAGAAGCCTTTTCTGATATTTTTAAATAA
Found at i:733118 original size:111 final size:111
Alignment explanation
Indices: 732884--733118 Score: 258
Period size: 111 Copynumber: 2.1 Consensus size: 111
732874 GGTTATTTAT
** * * * * * *
732884 TTATTTTTCAATATCAAAGAAAAGAGCTTTCTTAAGGTACTTAGAAGCTCTTTTCTAATATTTTT
1 TTATTTTGAAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTAATATTTCT
* * * *
732949 GAATAAATAAATATCTTACTATATTAAAATAAAATGTTTTTGATAT
66 AAATAAATAAATATCTTACTATATTAAAATAAAATATTTTTGAAAA
* *
732995 TTATTTTTAAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTGATATTTCT
1 TTATTTTGAAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTAATATTTCT
* * * * * *
733060 AAATAAGTAAATATCTTA-TTTATGTATATTAATATATTTTCTTAAAA
66 AAATAAATAAATATCTTACTATAT-TAAAATAAAATATTTT-TGAAAA
733107 TTA-TTTGAAATA
1 TTATTTTGAAATA
733119 GTAGAATTAT
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
110 4 0.04
111 93 0.90
112 6 0.06
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.43
Consensus pattern (111 bp):
TTATTTTGAAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTAATATTTCT
AAATAAATAAATATCTTACTATATTAAAATAAAATATTTTTGAAAA
Found at i:733575 original size:20 final size:21
Alignment explanation
Indices: 733552--733603 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
733542 AGAAATTAAA
733552 AATTCATTTATTT-AATTTTT
1 AATTCATTTATTTAAATTTTT
* *
733572 AATTCTTTTCTTTCAAATTTTT
1 AATTCATTTATTT-AAATTTTT
733594 -ATT-ATTTATT
1 AATTCATTTATT
733604 ATTTTTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 16 0.62
21 3 0.12
22 7 0.27
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (21 bp):
AATTCATTTATTTAAATTTTT
Found at i:740104 original size:114 final size:114
Alignment explanation
Indices: 739902--740226 Score: 497
Period size: 114 Copynumber: 2.9 Consensus size: 114
739892 AAGTGACATG
* * *
739902 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTATTTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
*
739967 TGATTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAAATGAATT
66 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAAATGAATT
* *
740016 TTCTCATAGTAGAAATAAGAAGACCCAATAATATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* *
740081 TGGTTTGGTATGAACCCCAAAACCAATCATTAGATTTGAAAGATGAATT
66 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAAATGAATT
* * * *
740130 TGCTCATGGTAGAAATAAGGAGGCCCAATAACATCTTCTGGAAGTATTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
** * * *
740195 TGGTTCAGTAGGAACCACAGAACCAATCATTG
66 TGGTTTGGTATGAACCCCAAAACCAATCATTG
740227 AAATTAAAAG
Statistics
Matches: 191, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 191 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (114 bp):
TGCTCATAGTAGAAATAAGAAGACCCAATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAAATGAATT
Done.