Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008964.1 Hibiscus syriacus cultivar Beakdansim tig00112305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2156694
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
File 5 of 11
Found at i:742257 original size:54 final size:54
Alignment explanation
Indices: 742169--742377 Score: 364
Period size: 54 Copynumber: 3.9 Consensus size: 54
742159 GAAATCTTGG
*
742169 CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGAA
1 CAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGAA
* *
742223 TAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTAAA
1 CAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGAA
742277 CAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGAA
1 CAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGAA
* * *
742331 CAGAAGCCACAGGAAAGGATGAATGCGCTGTCAAATGTTTTACGAAC
1 CAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAAC
742378 CTGCTATTCT
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 147 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (54 bp):
CAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGAA
Found at i:743767 original size:76 final size:76
Alignment explanation
Indices: 743641--744429 Score: 1402
Period size: 76 Copynumber: 10.4 Consensus size: 76
743631 CTATTTCCTA
*
743641 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
743706 AGCCTTAGGGT
66 AGCCTTAGGGT
*
743717 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
743782 AGCCTTAGGGT
66 AGCCTTAGGGT
*
743793 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
743858 A-CCTTCGGGT
66 AGCCTTAGGGT
* *
743868 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
743933 AACCTTAGGGT
66 AGCCTTAGGGT
743944 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
744009 GGCCTTAGGGT
66 AGCCTTAGGGT
744020 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
744085 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
744096 CATCTGTAAGTCCTACAGTGCATGATGTTTTCGAAAAGCCTTTGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
744161 AGCCTTAGGGT
66 AGCCTTAGGGT
744172 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
744237 AGCCTTAGGGT
66 AGCCTTAGGGT
744248 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
744313 A-CCTTCGGGT
66 AGCCTTAGGGT
*
744323 TATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
* *
744388 AAACCTTCGGGT
65 AAGCCTTAGGGT
* *
744400 CATCTGTAAGCCCTTCAGTGCATGATGTTT
1 CATCTGTAAGTCCTACAGTGCATGATGTTT
744430 TCAACATTTC
Statistics
Matches: 687, Mismatches: 23, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
75 143 0.21
76 508 0.74
77 36 0.05
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:744041 original size:227 final size:227
Alignment explanation
Indices: 743641--744429 Score: 1416
Period size: 227 Copynumber: 3.5 Consensus size: 227
743631 CTATTTCCTA
*
743641 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* *
743706 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGCTTTTT
66 AACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
*
743771 GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTC
131 GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC
743836 GGGAGCTTTTTGATGTTTTCAAACCTTCGGGT
196 GGGAGCTTTTTGATGTTTTCAAACCTTCGGGT
* *
743868 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
743933 AACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
66 AACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
*
743998 GATGTTTTCAAGGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC
131 GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC
*
744063 GGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGT
196 GGGAGCTTTTTGATGTTTTCAAA-CCTTCGGGT
* * *
744096 CATCTGTAAGTCCTACAGTGCATGATGTTTTCGAAAAGCCTTTGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
744161 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
66 AACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
744226 GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC
131 GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC
744291 GGGAGCTTTTTGATGTTTTCAAACCTTCGGGT
196 GGGAGCTTTTTGATGTTTTCAAACCTTCGGGT
*
744323 TATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
* * *
744388 AAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTT
65 AAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTT
744430 TCAACATTTC
Statistics
Matches: 538, Mismatches: 22, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
227 280 0.52
228 258 0.48
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (227 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC
GGGAGCTTTTTGATGTTTTCAAACCTTCGGGT
Found at i:744567 original size:3 final size:3
Alignment explanation
Indices: 744559--744626 Score: 82
Period size: 3 Copynumber: 22.0 Consensus size: 3
744549 TCATTTAAAT
** * *
744559 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA GTA TTA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
744607 TTA TTA TATA TTA TTTA TTA
1 TTA TTA T-TA TTA -TTA TTA
744627 AATATTACAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
3 49 0.89
4 6 0.11
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:745202 original size:5 final size:5
Alignment explanation
Indices: 745186--745241 Score: 103
Period size: 5 Copynumber: 11.2 Consensus size: 5
745176 AAAAAGGGAA
*
745186 AAGAG AATAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG
1 AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG
745236 AAGAG A
1 AAGAG A
745242 GAGCTTACTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 49 1.00
ACGTcount: A:0.61, C:0.00, G:0.38, T:0.02
Consensus pattern (5 bp):
AAGAG
Found at i:746647 original size:111 final size:111
Alignment explanation
Indices: 746413--746647 Score: 294
Period size: 111 Copynumber: 2.1 Consensus size: 111
746403 GGTTATTTAT
** * * * *
746413 TTATTTTTCAATATCAAAGAAAAGAGCTGTCTTAAGGTACCTAGAAGCTCTTTTCTGATATTTTT
1 TTATTTTGAAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTGATATTTCT
* * *
746478 GAATAAATAAATATCTTACTATATTAAAATAAAATATTTTTGATAT
66 AAATAAATAAATATCTTACTATATTAAAATAAAATATTTTTGAAAA
*
746524 TTATTTTTAAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTGATATTTCT
1 TTATTTTGAAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTGATATTTCT
* * * * * *
746589 AAATAAGTAAATATCTTA-TTTATGTATATTAATATATTTTCTTAAAA
66 AAATAAATAAATATCTTACTATAT-TAAAATAAAATATTTT-TGAAAA
746636 TTA-TTTGAAATA
1 TTATTTTGAAATA
746648 GTAGAATTAT
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
110 4 0.04
111 97 0.91
112 6 0.06
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (111 bp):
TTATTTTGAAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTGATATTTCT
AAATAAATAAATATCTTACTATATTAAAATAAAATATTTTTGAAAA
Found at i:766993 original size:84 final size:84
Alignment explanation
Indices: 766850--767027 Score: 277
Period size: 84 Copynumber: 2.1 Consensus size: 84
766840 AAGCACAAAT
* *
766850 AGTTTGAAATCAAATGAATACGGGTAATTAGTTAATTAAATTATGTACTTTATATTATTTAATTA
1 AGTTTGAAATCAAATGAATACAGGTAAATAGTTAATTAAATTATGTACTTTATATTATTTAATTA
* *
766915 TATTGTAAATTTTTATGTA
66 TACTGTAAATTATTATGTA
* * *
766934 ATTTTGAAATCAAATGAATACAGGTAAA-ATGTTAATTAAATTATTTACTTTATATTATTTATTT
1 AGTTTGAAATCAAATGAATACAGGTAAATA-GTTAATTAAATTATGTACTTTATATTATTTAATT
766998 ATACTGTAAATTATTATGTA
65 ATACTGTAAATTATTATGTA
767018 AGTTTGAAAT
1 AGTTTGAAAT
767028 TTAATAATAT
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
83 1 0.01
84 84 0.99
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (84 bp):
AGTTTGAAATCAAATGAATACAGGTAAATAGTTAATTAAATTATGTACTTTATATTATTTAATTA
TACTGTAAATTATTATGTA
Found at i:776204 original size:13 final size:13
Alignment explanation
Indices: 776168--776207 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
776158 GGGTAAATAG
*
776168 TTAATTAAATTAT
1 TTAATTATATTAT
*
776181 TTACTTTATATTAT
1 TTA-ATTATATTAT
776195 TTAATTATATTAT
1 TTAATTATATTAT
776208 AAATTTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (13 bp):
TTAATTATATTAT
Found at i:777685 original size:411 final size:410
Alignment explanation
Indices: 776912--777719 Score: 1364
Period size: 411 Copynumber: 2.0 Consensus size: 410
776902 AAAGGGAAAG
776912 GGAAAGGCACCAAAAAACATACTTTTGAAGGTTTTTCTTTGGGTAGAAGATCAAAATTTTAGTAA
1 GGAAAGGCACCAAAAAACATACTTTTGAAGGTTTTTCTTTGGGTAGAAGATCAAAATTTTAGTAA
* * *
776977 CATTGGGTATAGTGATTCATCTACTGATAATCAAATCATCAATTTCAATTTAGAGTGGAGTATTA
66 CATTGGGTATAGTGATTCATCTACTAATAATCAAATCATCAATTTCAATTTAGAATGGAGCATTA
*
777042 TAAGAATATATTGACGGAAACATTAGAACACACAAGATTAGTGATTGAAAGATTAAAACCTTCTA
131 TAAGAATATATTGACGGAAACATTAGAACACACAAGATTAGTGATTGAAAGATTAAAACCTACTA
* *
777107 TTGATAATCAAATCAAATTGGTGAATTAGGTTAGATTCAAATACTATTATTTGCAACTTAGTTAA
196 TTGATAATCAAATCAAATTAGTGAATTAGGTTAGATTCAAATACTATCATTTGCAACTTAGTTAA
* * *
777172 ATAATTTAAAATTGAATTATTTTTCTCATTTTCACTCAAACTTTTATTTATGAAAATGTTTCTAT
261 ATAATTTAAAATTGAATTATTGTTCTCATTTTCACTCAAACTTTTATTCATGAAAATGTTACTAT
* * *
777237 TTAAAAGTAAACATGAGACATTCGGCACTTTACAAGCACAAATAGTTTGAAATCAAATGAATACA
326 TTAAAAGTAAACATGAGACATTCGACACTTCACAAGCAAAAATAGTTTGAAATCAAATGAATAC-
777302 GGGTAAATTCAGAGATCAAAT
390 GGGTAAATTCAGAGATCAAAT
* **
777323 GGAAAGGCACCAAAAAGCATACTTTTGAAGGTTTTTCTTTGGGTAGGTGATCAAAATTTTAGTAA
1 GGAAAGGCACCAAAAAACATACTTTTGAAGGTTTTTCTTTGGGTAGAAGATCAAAATTTTAGTAA
* * *
777388 TATTGGGTATAGTGATTCATCTACTAATAATCAAATCATCAATTTCAATTTGGAATGGAGCATTC
66 CATTGGGTATAGTGATTCATCTACTAATAATCAAATCATCAATTTCAATTTAGAATGGAGCATTA
* * * *
777453 TAAGAATATATTGACGGAAACATTATAAGACACAAGATTAGTGATTGAAATATTAGAACCTACTA
131 TAAGAATATATTGACGGAAACATTAGAACACACAAGATTAGTGATTGAAAGATTAAAACCTACTA
**
777518 TTGATAATCAAATCAAATTAGTGAATTAGGTTAGATTCAAATACTATCATTTTTAACTTAGTTAA
196 TTGATAATCAAATCAAATTAGTGAATTAGGTTAGATTCAAATACTATCATTTGCAACTTAGTTAA
* *
777583 ATAATTTGAAATTGAATTATTGTTCTCATTTTCACTCAAACTTTTATTCATGTAAATGTTACTAT
261 ATAATTTAAAATTGAATTATTGTTCTCATTTTCACTCAAACTTTTATTCATGAAAATGTTACTAT
*
777648 TTAAAAGTAAACATGAGACATTCGATACTTCACAAGCAAAAATAGTTTGAAATCAAATGAATACG
326 TTAAAAGTAAACATGAGACATTCGACACTTCACAAGCAAAAATAGTTTGAAATCAAATGAATACG
777713 GGTAAAT
391 GGTAAAT
777720 AGTTAATTAA
Statistics
Matches: 370, Mismatches: 27, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
410 8 0.02
411 362 0.98
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (410 bp):
GGAAAGGCACCAAAAAACATACTTTTGAAGGTTTTTCTTTGGGTAGAAGATCAAAATTTTAGTAA
CATTGGGTATAGTGATTCATCTACTAATAATCAAATCATCAATTTCAATTTAGAATGGAGCATTA
TAAGAATATATTGACGGAAACATTAGAACACACAAGATTAGTGATTGAAAGATTAAAACCTACTA
TTGATAATCAAATCAAATTAGTGAATTAGGTTAGATTCAAATACTATCATTTGCAACTTAGTTAA
ATAATTTAAAATTGAATTATTGTTCTCATTTTCACTCAAACTTTTATTCATGAAAATGTTACTAT
TTAAAAGTAAACATGAGACATTCGACACTTCACAAGCAAAAATAGTTTGAAATCAAATGAATACG
GGTAAATTCAGAGATCAAAT
Found at i:789308 original size:94 final size:94
Alignment explanation
Indices: 789134--789314 Score: 247
Period size: 94 Copynumber: 1.9 Consensus size: 94
789124 TGCCATTAAT
* * * * * * *
789134 TCCAAAATGTAGAAATAGTATCGATATTGTAATAGAGTATCGGTACCATAGTATAGAAGTATCGG
1 TCCAAAATGTAGAAATAGTATCGATACTGAAAGAAAGTATCGGTACCACAATATAGAAGTATCGA
*
789199 TACTAAGAGAAAGGTATCGATAACAAGGA
66 TACCAAGAGAAAGGTATCGATAACAAGGA
*
789228 TCCAGAATGTAGAAATAGTATCGATACTGAAAGAAAGTATCGGTACCACAATATAGAAGTATCGA
1 TCCAAAATGTAGAAATAGTATCGATACTGAAAGAAAGTATCGGTACCACAATATAGAAGTATCGA
* *
789293 TACCATG-GTAGAGGTATCGATA
66 TACCAAGAG-AAAGGTATCGATA
789315 CTATTGAGCC
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
93 1 0.01
94 74 0.99
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (94 bp):
TCCAAAATGTAGAAATAGTATCGATACTGAAAGAAAGTATCGGTACCACAATATAGAAGTATCGA
TACCAAGAGAAAGGTATCGATAACAAGGA
Found at i:789843 original size:81 final size:80
Alignment explanation
Indices: 789707--791160 Score: 1888
Period size: 81 Copynumber: 18.0 Consensus size: 80
789697 TGTTTTAAAA
* * * *
789707 TAAAATATTAAATGCCTATATGTGTATTTGACAAAAAAGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAT-TGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
789772 GTTAAATACCTTAGAG
65 GTTAAATACCTTTGAG
* * * * *
789788 TAAAAGATTAAATGCATATATGTGCATTTGAAAGAAAGGTGTCAATCATGTCAGTTATATTAAAG
1 TAAAAGATTAAATGCCTAT-TGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
789853 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* * * * * * * *
789869 TAAAAGATTAAATGCCTAGTTGTGTATTTAAGAAAAATGTGTCAATCATGTCAGATAGATGAAAT
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* * *
789934 TTTAAAAAACTTTGAG
65 GTTAAATACCTTTGAG
* * *
789950 TAAAAGATTAAATGCCTAGCTATGCATTTGACAGAAAGGTGCCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
790015 GTTAAATATCTTTGAG
65 GTTAAATACCTTTGAG
* * * * * *
790031 TAAAAGAATAAATACCTAGCTGTGCATTTGATAGAAAGATGTCAATCATGCCAGTTAGATGAAAT
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
790096 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* * * *
790112 T-GAAGATTAAATGCCTAGCTGTGCATTTGACAGGAAGATGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
790176 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* *
790192 TAAAAGATTAAATTCCTAGTTGTGCATTTGACAGAAAGATGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
790257 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* * * *
790273 T-AAACATTAAATGTCTAGCTGAGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
790337 GTTAAATACCTCTGAG
65 GTTAAATACCTTTGAG
* *
790353 TAAAAGATTAAATGCTTAGTTGTGCATTTGACAGAAAAGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
790418 GTTAAATACATTTGAG
65 GTTAAATACCTTTGAG
* * * * * *
790434 TAAAATATTAAATGTCTAGCTGTGTATTTGATAGAAAGGTGTTAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
790499 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* * *
790515 TGAAAGATTAAATGCCTAGCTGTGCATTTGACAGGAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
790580 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* *
790596 TAAAAGATTAAATTCCTAGTTGTGCATTTGACAGAAAGGTGACAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
790661 ATTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* * * * *
790677 TAAAAGATTAAATTCCTAGATGTGCATTTGATAGAAATGTGTCAATCATGCCAGTTATATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
790742 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* * * * * *
790758 TGAAAGATTAAATGCTTAGTTGTGCATTTGACAGGAATGTGTCAATCATGCCAGTTATATGAACG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
790823 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
*
790839 TAAAAGATTAAACT-CCTAGTTGTGTATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAA
1 TAAAAGATTAAA-TGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAA
790903 GGTTAAATACCTTTGAG
64 GGTTAAATACCTTTGAG
* * * ** * * *
790920 TAAAATATTAAATGCCTAGTTATGCATTTGATAGAAATATGTCAATTATTCCAATTAGATGAAAG
1 TAAAAGATTAAATGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
790985 GTTAAATACATTTGAG
65 GTTAAATACCTTTGAG
* * * *
791001 TAAAATATTAAATTGCCTAGTTGTGCGTTTGACAGAAAGGTGTCAATAATGCCAGTTAGAGGAAA
1 TAAAAGATTAAA-TGCCTA-TTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAA
*
791066 GGTTAAATACCTTTTAG
64 GGTTAAATACCTTTGAG
* * * * * *
791083 TAAAAGATTAAATGCCTAACTGTGCATTTGATAGAAAGATGTCAATCGTGCAAGTTAGAAGAAAG
1 TAAAAGATTAAATGCCT-ATTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* *
791148 ATTAAAAACCTTT
65 GTTAAATACCTTT
791161 AGGATGAACG
Statistics
Matches: 1222, Mismatches: 144, Indels: 14
0.89 0.10 0.01
Matches are distributed among these distances:
80 148 0.12
81 1002 0.82
82 72 0.06
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (80 bp):
TAAAAGATTAAATGCCTATTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
TTAAATACCTTTGAG
Found at i:801802 original size:21 final size:22
Alignment explanation
Indices: 801776--801816 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
801766 AATTATGCCA
* *
801776 GTTAGA-TGAAAGGTTAAATAC
1 GTTAGAGTAAAAGATTAAATAC
801797 GTTAGAGTAAAAGATTAAAT
1 GTTAGAGTAAAAGATTAAAT
801817 GCCTAGATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.29
Consensus pattern (22 bp):
GTTAGAGTAAAAGATTAAATAC
Found at i:801947 original size:80 final size:81
Alignment explanation
Indices: 801723--802813 Score: 1458
Period size: 81 Copynumber: 13.5 Consensus size: 81
801713 TGCTTTAAAT
* * * * *
801723 TAAAAGATTAAATGCATAGTTGTGCTTTTGACAGAAAAGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* *
801788 GTTAAATACGTTAGAG
66 GTTAAATACCTTTGAG
* *
801804 TAAAAGATTAAATGCCTAGATGTGCATTTGATAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
801869 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * *** *
801885 TAAAACATTAAA-GCCTAGTTGTTCATTTGACAGAAAGCCATCAATAATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
801949 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
801965 TAAAAGATTAAATGCCTAGTTATGCATTTGACATAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
802030 GTTAAAAACCTTTGAG
66 GTTAAATACCTTTGAG
* * * ** ** * * *
802046 TAAAATATTAAATGCCTAACTGTGTATTTGACAGAAATATGTCAATCATGTTAGCTAGACGTAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
802111 GTTAAATACC-TTGAG
66 GTTAAATACCTTTGAG
* * *
802126 TAAAAGATTAAATGCCTAGATGTGCATTTGACAGAAATGTGTCAATCATTCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
802191 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * *
802207 TAAAAGATTAAA-GCCTAGTTGTTCATTTGACA-AAAGGTGTCAATCACGCCAGTTAAATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
802270 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
802286 TAAAAAATTAAATGCCTAGCTGAGAATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
802351 GTTAAATACATTTGAG
66 GTTAAATACCTTTGAG
* * *
802367 TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAAATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
802432 GTTAAATACATTTGAG
66 GTTAAATACCTTTGAG
* * * *
802448 TAAAAGATTAAATGCCTAG-TGTGCATTTGATAGAAATGTGTCTATCATGTCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
802512 GTTAAATATACCTTTGGG
66 GTT-AA-ATACCTTTGAG
* * *
802530 TAAACGATTAAATGCCCAGCTGTGCATTTGAAAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
802595 GTTAAATACATTTGAG
66 GTTAAATACCTTTGAG
* * * * *
802611 TAAAATATTAAATG-CTAGCTGAGCATTTGACAGAAAGGTGTTAGTCATGCTAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
802675 GTTAAATACCTTTAAG
66 GTTAAATACCTTTGAG
* * *
802691 TAAAAGATTAAATGCCTAACTGTGCATTCGACAGAAAGGTGTCAATCATGCAAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* *
802756 GCTAAATACCTTTGGG
66 GTTAAATACCTTTGAG
* * * * *
802772 ATGAAAA-ACTAAATACCTAACTGTGCTTTTTGGCAGAAAGGT
1 -T-AAAAGATTAAATGCCTAGCTGTGC-ATTTGACAGAAAGGT
802814 TCCATTAATG
Statistics
Matches: 890, Mismatches: 109, Indels: 20
0.87 0.11 0.02
Matches are distributed among these distances:
79 54 0.06
80 290 0.33
81 440 0.49
82 46 0.05
83 60 0.07
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (81 bp):
TAAAAGATTAAATGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:802005 original size:161 final size:162
Alignment explanation
Indices: 801723--802769 Score: 1426
Period size: 161 Copynumber: 6.5 Consensus size: 162
801713 TGCTTTAAAT
* * * *
801723 TAAAAGATTAAATGCATAGTTGTGCTTTTGACAGAAAAGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* * * * *
801788 GTTAAATACGTTAGAGTAAAAGATTAAATGCCTAGATGTGCATTTGATAGAAAGGTGTCAATCAT
66 GTTAAATACCTTTGAGTAAAAGATTAAATGCCTAGTTATGCATTTGACAGAAAGGTGTCAATCAT
801853 GCCAGTTAGATGAAAGGTTAAATACCTTTGAG
131 GCCAGTTAGATGAAAGGTTAAATACCTTTGAG
* * *** *
801885 TAAAACATTAAA-GCCTAGTTGTTCATTTGACAGAAAGCCATCAATAATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
801949 GTTAAATACCTTTGAGTAAAAGATTAAATGCCTAGTTATGCATTTGACATAAAGGTGTCAATCAT
66 GTTAAATACCTTTGAGTAAAAGATTAAATGCCTAGTTATGCATTTGACAGAAAGGTGTCAATCAT
*
802014 GCCAGTTAGATGAAAGGTTAAAAACCTTTGAG
131 GCCAGTTAGATGAAAGGTTAAATACCTTTGAG
* ** * ** ** * * *
802046 TAAAATATTAAATGCCTAACTGTGTATTTGACAGAAATATGTCAATCATGTTAGCTAGACGTAAG
1 TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* * *
802111 GTTAAATACC-TTGAGTAAAAGATTAAATGCCTAGATGTGCATTTGACAGAAATGTGTCAATCAT
66 GTTAAATACCTTTGAGTAAAAGATTAAATGCCTAGTTATGCATTTGACAGAAAGGTGTCAATCAT
*
802175 TCCAGTTAGATGAAAGGTTAAATACCTTTGAG
131 GCCAGTTAGATGAAAGGTTAAATACCTTTGAG
* * *
802207 TAAAAGATTAAA-GCCTAGTTGTTCATTTGACA-AAAGGTGTCAATCACGCCAGTTAAATGAAAG
1 TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* * *
802270 GTTAAATACCTTTGAGTAAAAAATTAAATGCCTAGCTGA-GAATTTGACAGAAAGGTGTCAATCA
66 GTTAAATACCTTTGAGTAAAAGATTAAATGCCTAG-TTATGCATTTGACAGAAAGGTGTCAATCA
*
802334 TGCCAGTTAGATGAAAGGTTAAATACATTTGAG
130 TGCCAGTTAGATGAAAGGTTAAATACCTTTGAG
* *
802367 TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAAATGAAAG
1 TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* * * * *
802432 GTTAAATACATTTGAGTAAAAGATTAAATGCCTAG-TGTGCATTTGATAGAAATGTGTCTATCAT
66 GTTAAATACCTTTGAGTAAAAGATTAAATGCCTAGTTATGCATTTGACAGAAAGGTGTCAATCAT
* *
802496 GTCAGTTAGATGAAAGGTTAAATATACCTTTGGG
131 GCCAGTTAGATGAAAGGTT-AA-ATACCTTTGAG
* * * *
802530 TAAACGATTAAATGCCCAGCTGTGCATTTGAAAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* * * * *
802595 GTTAAATACATTTGAGTAAAATATTAAATG-CTAGCTGA-GCATTTGACAGAAAGGTGTTAGTCA
66 GTTAAATACCTTTGAGTAAAAGATTAAATGCCTAG-TTATGCATTTGACAGAAAGGTGTCAATCA
* *
802658 TGCTAGTTAGATGAAAGGTTAAATACCTTTAAG
130 TGCCAGTTAGATGAAAGGTTAAATACCTTTGAG
** * *
802691 TAAAAGATTAAATGCCTAACTGTGCATTCGACAGAAAGGTGTCAATCATGCAAGTTAGATGAAAG
1 TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
802756 GCTAAATACCTTTG
66 GTTAAATACCTTTG
802770 GGATGAAAAA
Statistics
Matches: 776, Mismatches: 99, Indels: 21
0.87 0.11 0.02
Matches are distributed among these distances:
159 32 0.04
160 105 0.14
161 375 0.48
162 129 0.17
163 135 0.17
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (162 bp):
TAAAAGATTAAATGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAGTAAAAGATTAAATGCCTAGTTATGCATTTGACAGAAAGGTGTCAATCAT
GCCAGTTAGATGAAAGGTTAAATACCTTTGAG
Found at i:810561 original size:22 final size:22
Alignment explanation
Indices: 810531--810579 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
810521 GACTTTAAAT
* *
810531 TTTTTTTTTATCAT-TCTTTTTA
1 TTTTATTTTATCTTATC-TTTTA
*
810553 TTTTATTTTTTCTTATCTTTTA
1 TTTTATTTTATCTTATCTTTTA
810575 TTTTA
1 TTTTA
810580 AAACAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTATTTTATCTTATCTTTTA
Found at i:811821 original size:21 final size:21
Alignment explanation
Indices: 811795--811847 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
811785 GTTTCCAGAT
*
811795 TCGCAACGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
811816 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
811837 TCGCAATGCGA
1 TCGCAATGCGA
811848 TAGTCGAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:811861 original size:21 final size:21
Alignment explanation
Indices: 811837--811973 Score: 165
Period size: 21 Copynumber: 6.6 Consensus size: 21
811827 ACTTGGACTA
*
811837 TCGCAATGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
811858 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
*
811879 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCGAAGT
*
811900 TCGCATTGCGATAGTCG-ACT
1 TCGCATTGCGATAGTCGAAGT
*
811920 ATCGCATTGCGAT-TTAC-ATA-T
1 -TCGCATTGCGATAGT-CGA-AGT
*
811941 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCGAAGT
*
811962 TCGCGTTGCGAT
1 TCGCATTGCGAT
811974 TTATTCCAAA
Statistics
Matches: 102, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
20 17 0.17
21 84 0.82
22 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (21 bp):
TCGCATTGCGATAGTCGAAGT
Found at i:811862 original size:42 final size:42
Alignment explanation
Indices: 811816--811953 Score: 131
Period size: 42 Copynumber: 3.3 Consensus size: 42
811806 ACTTGGACTA
* * *
811816 TCGCAATGCGA-ACTTGGACTATCGCAATGCGATAGTCGAAGT
1 TCGCATTGCGATA-TTGGACTATCGCATTGCGATAGTCCAAGT
* * *
811858 TCGCATTGCGATAGTCGAAGT-TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATA-TTGGACTATCGCATTGCGATAGTCCAAGT
* * * *
811900 TCGCATTGCGATAGTCGACTATCGCATTGCGAT-TTACATA-T
1 TCGCATTGCGATATTGGACTATCGCATTGCGATAGTCCA-AGT
811941 TCGCATTGCGATA
1 TCGCATTGCGATA
811954 GTCCAAGTTC
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
41 19 0.24
42 55 0.70
43 5 0.06
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (42 bp):
TCGCATTGCGATATTGGACTATCGCATTGCGATAGTCCAAGT
Found at i:811904 original size:63 final size:62
Alignment explanation
Indices: 811837--811965 Score: 174
Period size: 62 Copynumber: 2.1 Consensus size: 62
811827 ACTTGGACTA
*
811837 TCGCAATGCGATAGTCGAAGT-TCGCATTGCGATAGT-CGA-AGTTCGCATTGCGATAGTCCAAG
1 TCGCAATGCGATAGTCG-ACTATCGCATTGCGAT-GTAC-ATA-TTCGCATTGCGATAGTCCAAG
811899 T
62 T
* *
811900 TCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGT
1 TCGCAATGCGATAGTCGACTATCGCATTGCGATGTACATATTCGCATTGCGATAGTCCAAGT
811962 TCGC
1 TCGC
811966 GTTGCGATTT
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
62 30 0.50
63 30 0.50
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (62 bp):
TCGCAATGCGATAGTCGACTATCGCATTGCGATGTACATATTCGCATTGCGATAGTCCAAGT
Found at i:811987 original size:23 final size:22
Alignment explanation
Indices: 811843--812007 Score: 82
Period size: 21 Copynumber: 7.9 Consensus size: 22
811833 ACTATCGCAA
* * *
811843 TGCGA-TAGTCGAAGTTCGCAT
1 TGCGATTAGTCCAAATTCGCGT
* * *
811864 TGCGA-TAGTCGAAGTTCGCAT
1 TGCGATTAGTCCAAATTCGCGT
* *
811885 TGCGA-TAGTCCAAGTTCGCAT
1 TGCGATTAGTCCAAATTCGCGT
* * *
811906 TGCGA-TAGT-CGACTATCGCAT
1 TGCGATTAGTCCAAAT-TCGCGT
* * *
811927 TGCGATT--TACATATTCGCAT
1 TGCGATTAGTCCAAATTCGCGT
*
811947 TGCGA-TAGTCCAAGTTCGCGT
1 TGCGATTAGTCCAAATTCGCGT
*
811968 TGCGATTTATTCCAAATT--CGT
1 TGCGA-TTAGTCCAAATTCGCGT
*
811989 TGCGA-TAGTCCAAAATCGC
1 TGCGATTAGTCCAAATTCGC
812008 AACGACTGGT
Statistics
Matches: 121, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
19 10 0.08
20 15 0.12
21 86 0.71
22 1 0.01
23 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (22 bp):
TGCGATTAGTCCAAATTCGCGT
Found at i:811997 original size:42 final size:42
Alignment explanation
Indices: 811857--812001 Score: 140
Period size: 42 Copynumber: 3.5 Consensus size: 42
811847 ATAGTCGAAG
* *
811857 TTCGCATTGCGATAGTCGAAGTTCGCATTGCGA--TAGTCCAAG
1 TTCG-ATTGCGATAGTCCAAGTTCGCATTGCGATTTA-TCCAAA
* * *
811899 TTCGCATTGCGATAGT-CGACTATCGCATTGCGATTTA--CATA
1 TTCG-ATTGCGATAGTCCAAGT-TCGCATTGCGATTTATCCAAA
*
811940 TTCGCATTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAA
1 TTCG-ATTGCGATAGTCCAAGTTCGCATTGCGATTTA-TCCAAA
811984 TTCG-TTGCGATAGTCCAA
1 TTCGATTGCGATAGTCCAA
812002 AATCGCAACG
Statistics
Matches: 87, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
41 34 0.39
42 44 0.51
44 9 0.10
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (42 bp):
TTCGATTGCGATAGTCCAAGTTCGCATTGCGATTTATCCAAA
Found at i:812630 original size:6 final size:6
Alignment explanation
Indices: 812619--812663 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
812609 TCTCGTCTCG
812619 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
812664 AATACGTGTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.00, C:0.16, G:0.51, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:812780 original size:21 final size:21
Alignment explanation
Indices: 812756--812887 Score: 141
Period size: 21 Copynumber: 6.3 Consensus size: 21
812746 ATTTTGGACT
812756 ATCGCAACGAA-TCTGGAATAA
1 ATCGCAACGAACT-TGGAATAA
*
812777 ATCGCAATGCGAACTTGGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
812798 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
812819 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
*
812840 ATCGCAACGCGAACTTGGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
812861 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
812882 AT-GCAA
1 ATCGCAA
812888 ATATGTAAAT
Statistics
Matches: 95, Mismatches: 7, Indels: 19
0.79 0.06 0.16
Matches are distributed among these distances:
19 20 0.21
20 4 0.04
21 50 0.53
23 20 0.21
24 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (21 bp):
ATCGCAACGAACTTGGAATAA
Found at i:812855 original size:63 final size:63
Alignment explanation
Indices: 812756--812887 Score: 232
Period size: 63 Copynumber: 2.1 Consensus size: 63
812746 ATTTTGGACT
*
812756 ATCGCAACGAATCTGGAATAAATCGCAATGCGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATCTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
812819 ATCGCAACGAA-CTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATC-TGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
812882 AT-GCAA
1 ATCGCAA
812888 ATATGTAAAT
Statistics
Matches: 67, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
62 5 0.07
63 62 0.93
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (63 bp):
ATCGCAACGAATCTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
Found at i:814569 original size:60 final size:60
Alignment explanation
Indices: 814498--814658 Score: 252
Period size: 60 Copynumber: 2.7 Consensus size: 60
814488 GTCGGATGAT
* *
814498 CATTTTGTAACTTTTAATAGTCGAATGACTCAACAAATCAATTTTATATTGTCAGGAGAC
1 CATTTTATAACTTTTAATAGTCGAATGACTCAACAAATCAATTTTATATTATCAGGAGAC
* *
814558 CATTTTATAACTTTTAATAGTCGAATGACTCAACAAATCAACTTTCTATTATCAGGAGAC
1 CATTTTATAACTTTTAATAGTCGAATGACTCAACAAATCAATTTTATATTATCAGGAGAC
* * *
814618 CATTTTATAACTTTTAATATTCG-ATGACTCAATAAAACAAT
1 CATTTTATAACTTTTAATAGTCGAATGACTCAACAAATCAAT
814659 ATCTTATTAT
Statistics
Matches: 93, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 15 0.16
60 78 0.84
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (60 bp):
CATTTTATAACTTTTAATAGTCGAATGACTCAACAAATCAATTTTATATTATCAGGAGAC
Found at i:814601 original size:31 final size:31
Alignment explanation
Indices: 814506--814602 Score: 94
Period size: 30 Copynumber: 3.2 Consensus size: 31
814496 ATCATTTTGT
814506 AACTTTTAATAGTCGAATGACTCAACAAATC
1 AACTTTTAATAGTCGAATGACTCAACAAATC
* * ****
814537 AA-TTTTATATTGTCAGGA-GAC-CATTTTAT-
1 AACTTTTA-ATAGTC-GAATGACTCAACAAATC
814566 AACTTTTAATAGTCGAATGACTCAACAAATC
1 AACTTTTAATAGTCGAATGACTCAACAAATC
814597 AACTTT
1 AACTTT
814603 CTATTATCAG
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
28 2 0.04
29 10 0.21
30 18 0.38
31 16 0.33
32 2 0.04
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.35
Consensus pattern (31 bp):
AACTTTTAATAGTCGAATGACTCAACAAATC
Found at i:821540 original size:16 final size:16
Alignment explanation
Indices: 821519--821549 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
821509 AGATGGTTGG
821519 ATGAAGCTTAACGCTA
1 ATGAAGCTTAACGCTA
821535 ATGAAGCTTAACGCT
1 ATGAAGCTTAACGCT
821550 GATGGAGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (16 bp):
ATGAAGCTTAACGCTA
Found at i:822448 original size:43 final size:44
Alignment explanation
Indices: 822393--822489 Score: 103
Period size: 43 Copynumber: 2.2 Consensus size: 44
822383 CAAAAAATTG
* * *
822393 TTAATTTACTAATAGATAATA-AAAATA-ATAAATTGTTAATCTA
1 TTAATTTACTAATAAACAATACAAAATACA-AAATTATTAATCTA
822436 TTAATGTT-CTAATAAACAATACAAAATACAAAATTATTAAT-TA
1 TTAAT-TTACTAATAAACAATACAAAATACAAAATTATTAATCTA
* *
822479 ATATTTTACTA
1 TTAATTTACTA
822490 CACTAAAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
42 2 0.04
43 24 0.53
44 18 0.40
45 1 0.02
ACGTcount: A:0.51, C:0.07, G:0.03, T:0.39
Consensus pattern (44 bp):
TTAATTTACTAATAAACAATACAAAATACAAAATTATTAATCTA
Found at i:832223 original size:29 final size:28
Alignment explanation
Indices: 832145--832224 Score: 90
Period size: 27 Copynumber: 2.8 Consensus size: 28
832135 GTCTCTATTA
* *
832145 TAATTTATAAAAGGTTTTATCCTTAATTT
1 TAATTTATTAAA-GTTTTGTCCTTAATTT
***
832174 TAATTTA-TAAAAAATTGTCCTTAATTT
1 TAATTTATTAAAGTTTTGTCCTTAATTT
832201 TAATTTATGTAAAGTTTTGTCCTT
1 TAATTTAT-TAAAGTTTTGTCCTT
832225 TTACTAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
27 19 0.46
28 3 0.07
29 19 0.46
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.51
Consensus pattern (28 bp):
TAATTTATTAAAGTTTTGTCCTTAATTT
Found at i:838785 original size:24 final size:24
Alignment explanation
Indices: 838753--838798 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
838743 TACGACAATG
838753 GTACCAACTAGTT-GACCTCTAATT
1 GTACCAACTAGTTAG-CCTCTAATT
*
838777 GTACCAACTGGTTAGCCTCTAA
1 GTACCAACTAGTTAGCCTCTAA
838799 ATTACACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (24 bp):
GTACCAACTAGTTAGCCTCTAATT
Found at i:846314 original size:26 final size:27
Alignment explanation
Indices: 846285--846336 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
846275 AGTTTTCAAA
846285 AGAGAATTATTTT-TTAT-TTTAAATTT
1 AGAG-ATTATTTTCTTATATTTAAATTT
* *
846311 AGAGCTTATTTTCTTATATTTGAATT
1 AGAGATTATTTTCTTATATTTAAATT
846337 CATGGTCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 8 0.36
27 7 0.32
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.56
Consensus pattern (27 bp):
AGAGATTATTTTCTTATATTTAAATTT
Found at i:848841 original size:16 final size:18
Alignment explanation
Indices: 848802--848845 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
848792 AAAAGTATTG
* *
848802 ATAATATATTTTTTTCAT
1 ATAAAATATTTTATTCAT
848820 ATAAAATATTTTATT-AT
1 ATAAAATATTTTATTCAT
848837 A-AAAATATT
1 ATAAAATATT
848846 ATTAATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 8 0.33
17 3 0.12
18 13 0.54
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
ATAAAATATTTTATTCAT
Found at i:849192 original size:151 final size:149
Alignment explanation
Indices: 848997--849287 Score: 385
Period size: 150 Copynumber: 1.9 Consensus size: 149
848987 TTTCTATAAC
*
848997 ACTTTTAAAAGTCACTTTTCAAAAACAATACCAAATTGACCCTTAATCTTTATC-CCTT-TGATT
1 ACTTTTAAAAGTCACTTTTCAAAAACAATACCAAACTGACCCTTAATCTTTATCACCTTCTGATT
*
849060 AAAAAAAGAATATTTTTAATAC-CAAAAAGAAGTTATTT-TATT-TTTTTAATTTTAATTTTGCA
66 --AAAAA-AATATTTTTAATACTC-AAAAGAAG--ATTTATATTCTTTTTAATTTTAATTTTACA
*
849122 TGTTACCTTTATTCTTATCTGCTTA
125 CGTTACCTTTATTCTTATCTGCTTA
** * ** **
849147 ACTTTTACTAGTCACTTTTTCAAATACAATGTCAAACTGACCCTTAATCTTTATCATTTTCTGAT
1 ACTTTTAAAAGTCAC-TTTTCAAAAACAATACCAAACTGACCCTTAATCTTTATCACCTTCTGAT
*
849212 TAAAAATATATTTTTAATACTCAAAAGAAGATTTATATTCTTTTTAATTTTAATTTTACACGTTA
65 TAAAAAAATATTTTTAATACTCAAAAGAAGATTTATATTCTTTTTAATTTTAATTTTACACGTTA
849277 CCTTTATTCTT
130 CCTTTATTCTT
849288 GTCTACTCAA
Statistics
Matches: 124, Mismatches: 11, Indels: 12
0.84 0.07 0.08
Matches are distributed among these distances:
148 4 0.03
149 4 0.03
150 68 0.55
151 41 0.33
152 2 0.02
153 5 0.04
ACGTcount: A:0.34, C:0.15, G:0.05, T:0.45
Consensus pattern (149 bp):
ACTTTTAAAAGTCACTTTTCAAAAACAATACCAAACTGACCCTTAATCTTTATCACCTTCTGATT
AAAAAAATATTTTTAATACTCAAAAGAAGATTTATATTCTTTTTAATTTTAATTTTACACGTTAC
CTTTATTCTTATCTGCTTA
Found at i:851505 original size:18 final size:19
Alignment explanation
Indices: 851484--851519 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
851474 AATACAAATT
851484 ATAAA-ACAAATTGAAAAC
1 ATAAACACAAATTGAAAAC
*
851502 ATAAACACAATTTGAAAA
1 ATAAACACAAATTGAAAA
851520 TGAATAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.64, C:0.11, G:0.06, T:0.19
Consensus pattern (19 bp):
ATAAACACAAATTGAAAAC
Found at i:851888 original size:26 final size:26
Alignment explanation
Indices: 851856--851918 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 26
851846 GTCAATTTTT
*
851856 TTTTAAATCAAACAAGTCAGAACA-A
1 TTTTAAATCAAACAAGTCACAACACA
*
851881 TATTTAAATGAAACAAGTCACAACACA
1 T-TTTAAATCAAACAAGTCACAACACA
851908 TTTTAAATCAA
1 TTTTAAATCAA
851919 CAATTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.03
26 30 0.91
27 2 0.06
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (26 bp):
TTTTAAATCAAACAAGTCACAACACA
Found at i:851941 original size:68 final size:68
Alignment explanation
Indices: 851854--851983 Score: 165
Period size: 68 Copynumber: 1.9 Consensus size: 68
851844 AAGTCAATTT
* *
851854 TTTTTTAAATCAAACAAGTCAGAAC-AATATTTAAATGAAACAAGTCACAACACAT-TTTAAATC
1 TTTTTTAAATCAAACAAGTCACAACAAAT-TTTAAATCAAACAAGTCACAACA-ATATTTAAATC
851917 AACAA
64 AACAA
** * * *
851922 TTTTTTAAATGGAATAAGTCACAACAAATTTTAATTCAAACATGTCACAACAATATTTAAAT
1 TTTTTTAAATCAAACAAGTCACAACAAATTTTAAATCAAACAAGTCACAACAATATTTAAAT
851984 GAAACAAGTC
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 2 0.04
68 48 0.91
69 3 0.06
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.32
Consensus pattern (68 bp):
TTTTTTAAATCAAACAAGTCACAACAAATTTTAAATCAAACAAGTCACAACAATATTTAAATCAA
CAA
Found at i:852006 original size:26 final size:26
Alignment explanation
Indices: 851916--852007 Score: 94
Period size: 26 Copynumber: 3.5 Consensus size: 26
851906 CATTTTAAAT
* *
851916 CAACAATTTTTTAAATGGAATAAGTCA
1 CAACAA-TTTTTAAATGAAACAAGTCA
* * * *
851943 CAACAAATTTTAATTCAAACATGTCA
1 CAACAATTTTTAAATGAAACAAGTCA
* *
851969 CAACAATATTTAAATGAAACAAGTCC
1 CAACAATTTTTAAATGAAACAAGTCA
*
851995 CAACAGTTTTTAA
1 CAACAATTTTTAA
852008 GCAAACATTT
Statistics
Matches: 51, Mismatches: 14, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
26 45 0.88
27 6 0.12
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (26 bp):
CAACAATTTTTAAATGAAACAAGTCA
Found at i:852006 original size:52 final size:52
Alignment explanation
Indices: 851916--852015 Score: 121
Period size: 52 Copynumber: 1.9 Consensus size: 52
851906 CATTTTAAAT
* * * *
851916 CAACAATTTTTTAAATGGAATAAGTCACAACAAATTTTAATTCAAACATGTCA
1 CAACAATTATTTAAATGAAACAAGTCACAACAAATTTTAA-GCAAACATGTCA
* **
851969 CAACAA-TATTTAAATGAAACAAGTCCCAACAGTTTTTAAGCAAACAT
1 CAACAATTATTTAAATGAAACAAGTCACAACAAATTTTAAGCAAACAT
852016 TTGAATCAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
51 7 0.17
52 27 0.68
53 6 0.15
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (52 bp):
CAACAATTATTTAAATGAAACAAGTCACAACAAATTTTAAGCAAACATGTCA
Found at i:855364 original size:21 final size:22
Alignment explanation
Indices: 855321--855364 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
855311 TTAAATTATA
* *
855321 TTAAAATATTTTTATTAACATT
1 TTAAAATATATTTAGTAACATT
*
855343 TTAAAAT-TATTTAGTAATATT
1 TTAAAATATATTTAGTAACATT
855364 T
1 T
855365 AATAAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TTAAAATATATTTAGTAACATT
Found at i:865817 original size:57 final size:58
Alignment explanation
Indices: 865749--865861 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 58
865739 ATATCACCTT
**
865749 TTTTAAAAATAATTACCAAAATGTCATTG-TTTTACAAAAAATTCCCAAAAT-TCACAG
1 TTTTAAAAATAATTACCAAAATGTCAACGTTTTTA-AAAAAATTCCCAAAATGTCACAG
*
865806 TTTTAAAAATAATTACCAGAATGTCAACGTTTTTAAAAAAATTCCCAAAATGTCAC
1 TTTTAAAAATAATTACCAAAATGTCAACGTTTTTAAAAAAATTCCCAAAATGTCAC
865862 CGGGTTGGGT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
57 42 0.82
58 9 0.18
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.33
Consensus pattern (58 bp):
TTTTAAAAATAATTACCAAAATGTCAACGTTTTTAAAAAAATTCCCAAAATGTCACAG
Found at i:865819 original size:28 final size:28
Alignment explanation
Indices: 865749--865861 Score: 122
Period size: 29 Copynumber: 3.9 Consensus size: 28
865739 ATATCACCTT
**
865749 TTTTAAAAATAATTACCAAAATGTCATTG
1 TTTTAAAAA-AATTACCAAAATGTCACAG
*
865778 TTTTACAAAAAATTCCCAAAAT-TCACAG
1 TTTTA-AAAAAATTACCAAAATGTCACAG
*
865806 TTTTAAAAATAATTACCAGAATGTCA-ACG
1 TTTTAAAAA-AATTACCAAAATGTCACA-G
*
865835 TTTTTAAAAAAATTCCCAAAATGTCAC
1 -TTTTAAAAAAATTACCAAAATGTCAC
865862 CGGGTTGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
27 4 0.06
28 20 0.28
29 34 0.48
30 13 0.18
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.33
Consensus pattern (28 bp):
TTTTAAAAAAATTACCAAAATGTCACAG
Found at i:870264 original size:17 final size:16
Alignment explanation
Indices: 870238--870317 Score: 58
Period size: 17 Copynumber: 4.9 Consensus size: 16
870228 TTGTCTGGGA
*
870238 AATAAATATTATGTTAT
1 AATAATTATTAT-TTAT
*
870255 AATAATTATTGTATTAT
1 AATAATTATTAT-TTAT
*
870272 AATTATTATTA-TTAT
1 AATAATTATTATTTAT
*
870287 AA-AATTATAATTATTATT
1 AATAATTATTA-T-TTA-T
870305 AAT-ATTATTATTT
1 AATAATTATTATTT
870318 TACAACGTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
14 6 0.12
15 6 0.12
16 2 0.04
17 27 0.54
18 9 0.18
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
AATAATTATTATTTAT
Found at i:870279 original size:3 final size:3
Alignment explanation
Indices: 870266--870316 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
870256 ATAATTATTG
* * * * *
870266 TAT TAT AAT TAT TAT TAT TA- TAA AAT TAT AAT TAT TAT TAA TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
870313 TAT T
1 TAT T
870317 TTACAACGTT
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:870285 original size:23 final size:23
Alignment explanation
Indices: 870267--870311 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
870257 TAATTATTGT
*
870267 ATTATAATTATTATTATTATAAA
1 ATTATAATTATTATTATTATTAA
*
870290 ATTATAATTATTATTAATATTA
1 ATTATAATTATTATTATTATTA
870312 TTATTTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
ATTATAATTATTATTATTATTAA
Found at i:880447 original size:36 final size:36
Alignment explanation
Indices: 880400--880664 Score: 306
Period size: 36 Copynumber: 7.4 Consensus size: 36
880390 TGGGGCAAGT
*
880400 TAATCTTAAGCCTTCACTGGAGAGTAGTGAAGCAAA
1 TAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAA
*
880436 TAATCTTAAGCCTTCACTGGAGAGTAGTGAAGCAAA
1 TAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAA
* *
880472 TAATCTTAAGCCTTCACTGGAGAGTAGTGAAGC-GA
1 TAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAA
* **
880507 TCCAT-TTGAAGCCTTCACCAAAGAGTAGTGAAGC-AA
1 T-AATCTT-AAGCCTTCACTGAAGAGTAGTGAAGCAAA
* * * *
880543 TCATCTTAAGCCTTCACCGAAGAATGGTGAAGCAAA
1 TAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAA
* *
880579 CAATCTTAAGCCTTCACAGAAGAGTAGTGAAGC--A
1 TAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAA
** *
880613 CCATCTTAAGCCTTCACTGAAGAGTAGTGAAGTAAA
1 TAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAA
*
880649 TCCATCTGTAAGCCTT
1 T-AATCT-TAAGCCTT
880665 TAGAGCAAGA
Statistics
Matches: 203, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
34 31 0.15
35 30 0.15
36 129 0.64
37 5 0.02
38 8 0.04
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (36 bp):
TAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAA
Found at i:880594 original size:107 final size:105
Alignment explanation
Indices: 880402--880664 Score: 330
Period size: 107 Copynumber: 2.4 Consensus size: 105
880392 GGGCAAGTTA
*** * * * *
880402 ATCTTAAGCCTTCACTGGAGAGTAGTGAAGCAAATAATCTTAAGCCTTCACTGGAGAGTAGTGAA
1 ATCTTAAGCCTTCACCAAAGAGTAGTGAAGC-AATCATCTTAAGCCTTCACCGAAGAATAGTGAA
* * *
880467 GCAAATAATCTTAAGCCTTCACTGGAGAGTAGTGAAGCGATCC
65 GCAAACAATCTTAAGCCTTCACAGAAGAGTAGTGAAGC-A-CC
*
880510 AT-TTGAAGCCTTCACCAAAGAGTAGTGAAGCAATCATCTTAAGCCTTCACCGAAGAATGGTGAA
1 ATCTT-AAGCCTTCACCAAAGAGTAGTGAAGCAATCATCTTAAGCCTTCACCGAAGAATAGTGAA
880574 GCAAACAATCTTAAGCCTTCACAGAAGAGTAGTGAAGCACC
65 GCAAACAATCTTAAGCCTTCACAGAAGAGTAGTGAAGCACC
** *
880615 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGTAAATCCATCTGTAAGCCTT
1 ATCTTAAGCCTTCACCAAAGAGTAGTGAAG-CAAT-CATCT-TAAGCCTT
880665 TAGAGCAAGA
Statistics
Matches: 136, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
105 27 0.20
106 6 0.04
107 70 0.51
108 33 0.24
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (105 bp):
ATCTTAAGCCTTCACCAAAGAGTAGTGAAGCAATCATCTTAAGCCTTCACCGAAGAATAGTGAAG
CAAACAATCTTAAGCCTTCACAGAAGAGTAGTGAAGCACC
Found at i:880662 original size:143 final size:142
Alignment explanation
Indices: 880402--880664 Score: 375
Period size: 143 Copynumber: 1.8 Consensus size: 142
880392 GGGCAAGTTA
* * * * * *
880402 ATCTTAAGCCTTCACTGGAGAGTAGTGAAGCAAATAATCTTAAGCCTTCACTGGAGAGTAGTGAA
1 ATCTTAAGCCTTCACCGAAGAATAGTGAAGCAAACAATCTTAAGCCTTCACAGAAGAGTAGTGAA
* * ** *
880467 GCAAATAATCTTAAGCCTTCACTGGAGAGTAGTGAAGCGATCCATTTGAAGCCTTCACCAAAGAG
66 GC-AACAATCTTAAGCCTTCACTGAAGAGTAGTGAAGAAATCCATCTGAAGCCTTCACCAAAGAG
880532 TAGTGAAGCAATC
130 TAGTGAAGCAATC
*
880545 ATCTTAAGCCTTCACCGAAGAATGGTGAAGCAAACAATCTTAAGCCTTCACAGAAGAGTAGTGAA
1 ATCTTAAGCCTTCACCGAAGAATAGTGAAGCAAACAATCTTAAGCCTTCACAGAAGAGTAGTGAA
*
880610 GC-ACCATCTTAAGCCTTCACTGAAGAGTAGTGAAGTAAATCCATCTGTAAGCCTT
66 GCAACAATCTTAAGCCTTCACTGAAGAGTAGTGAAG-AAATCCATCTG-AAGCCTT
880665 TAGAGCAAGA
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
141 30 0.29
142 8 0.08
143 67 0.64
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (142 bp):
ATCTTAAGCCTTCACCGAAGAATAGTGAAGCAAACAATCTTAAGCCTTCACAGAAGAGTAGTGAA
GCAACAATCTTAAGCCTTCACTGAAGAGTAGTGAAGAAATCCATCTGAAGCCTTCACCAAAGAGT
AGTGAAGCAATC
Found at i:880917 original size:41 final size:42
Alignment explanation
Indices: 880810--880994 Score: 205
Period size: 42 Copynumber: 4.5 Consensus size: 42
880800 TTCACAATTT
* * * *
880810 ATAAGTCCTTTGGGTCATCAGTAAGTCTTTTGAGCATGATGC
1 ATAAGTCCTTCGGGTCATCAGTAAGCCTTTAGAGCAAGATGC
* * * *
880852 TTAAATCTTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATG-
1 ATAAGTCCTTCGGGTCATCAGTAAGCCTTTAGAGCAAGATGC
* * *
880893 ATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAG-AATGATGC
1 ATAAGTCCTTCGGGTCATCAGTAAGCCTTTAGAGCAA-GATGC
* * *
880935 TTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATG-
1 ATAAGTCCTTCGGGTCATCAGTAAGCCTTTAGAGCAAGATGC
*
880976 ATAAGTCCTTCGGGCCATC
1 ATAAGTCCTTCGGGTCATC
880995 CATAAGACCT
Statistics
Matches: 116, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
40 2 0.02
41 47 0.41
42 65 0.56
43 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (42 bp):
ATAAGTCCTTCGGGTCATCAGTAAGCCTTTAGAGCAAGATGC
Found at i:880949 original size:83 final size:83
Alignment explanation
Indices: 880810--880994 Score: 325
Period size: 83 Copynumber: 2.2 Consensus size: 83
880800 TTCACAATTT
* * * * *
880810 ATAAGTCCTTTGGGTCATCAGTAAGTCTTTTGAGCATGATGCTTAAATCTTTCGGGTCATCTGTA
1 ATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGGTCATCTGTA
880875 AGCCTTTAGAGCAAGATG
66 AGCCTTTAGAGCAAGATG
880893 ATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGGTCATCTGTA
1 ATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGGTCATCTGTA
880958 AGCCTTTAGAGCAAGATG
66 AGCCTTTAGAGCAAGATG
880976 ATAAGTCCTTCGGGCCATC
1 ATAAGTCCTTCGGGCCATC
880995 CATAAGACCT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 97 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (83 bp):
ATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGGTCATCTGTA
AGCCTTTAGAGCAAGATG
Found at i:881188 original size:298 final size:299
Alignment explanation
Indices: 880651--881209 Score: 969
Period size: 298 Copynumber: 1.9 Consensus size: 299
880641 GAAGTAAATC
*
880651 CATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTTGGGCCATCCATAAGACCTTCGGGTAGGA
1 CATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGA
* * *
880716 TATTTTCACATGAATTTGAAAATGAAAAAAATGATGTTTTAAGAATATGAAACTTTTGAAAACTA
66 TATCTTCAAATGAATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGAAACTTTTGAAAACTA
* * ** * *
880781 ATAATGCGATTTTCAAAATTTCACAATTTATAAGTCCTTTGGGTCATCAGTAAGTCTTTTGAGCA
131 AGAATGCGATTTTCAAAATTTCACAATTGATAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCA
*
880846 TGATGCTTAAATCTTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCAT
196 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCAT
880911 CAGTAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGGT
261 CAGTAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGGT
*
880950 CATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTTGGGTAGGA
1 CATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGA
* *
881015 TGTCTTCAAATGAATTTGAAAATG-AAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACTA
66 TATCTTCAAATGAATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGAAACTTTTGAAAACTA
881079 AGAATGCGATTTTCAAAATTTCACAATTGATAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCA
131 AGAATGCGATTTTCAAAATTTCACAATTGATAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCA
881144 TGATGCTTAAATCCTTCGGGTCATCT-TGAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCA
196 TGATGCTTAAATCCTTCGGGTCATCTGT-AAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCA
881208 TC
260 TC
881210 CATAAGACCT
Statistics
Matches: 245, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
297 1 0.00
298 160 0.65
299 84 0.34
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (299 bp):
CATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGA
TATCTTCAAATGAATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGAAACTTTTGAAAACTA
AGAATGCGATTTTCAAAATTTCACAATTGATAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCA
TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCAT
CAGTAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGGT
Found at i:881202 original size:41 final size:41
Alignment explanation
Indices: 881106--881209 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 41
881096 ATTTCACAAT
* * * *
881106 TGATAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGA
1 TGATAAGTCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGA
* * * *
881147 TGCTTAAATCCTTCGGGTCATC-TTGAAGCCTTTAGAGCAAGA
1 TG-ATAAGTCCTTCGGGCCATCAGT-AAGCCTTTAGAGCAAGA
881189 TGATAAGTCCTTCGGGCCATC
1 TGATAAGTCCTTCGGGCCATC
881210 CATAAGACCT
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
41 19 0.38
42 31 0.62
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (41 bp):
TGATAAGTCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGA
Found at i:881262 original size:215 final size:215
Alignment explanation
Indices: 880891--881454 Score: 979
Period size: 215 Copynumber: 2.6 Consensus size: 215
880881 TAGAGCAAGA
*
880891 TGATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGGTCATCTG
1 TGATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
* *
880956 TAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTTGGGTAGGATGTCTT
66 TAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTT
*
881021 CAAATGAATTTGAAAATGAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACTAAGAATGC
131 CACATGAATTTGAAAATGAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACTAAGAATGC
*
881086 GATTTTCAAAATTTCACAAT
196 AATTTTCAAAATTTCACAAT
*
881106 TGATAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCT-
1 TGATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
*
881170 TGAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGGTGTTT
66 T-AAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTT
*
881235 TCACATGAATTTGAAAATGAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACTAAGGATG
130 TCACATGAATTTGAAAATGAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACTAAGAATG
881300 CAATTTTCAAAATTTCACAAT
195 CAATTTTCAAAATTTCACAAT
* *
881321 TTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATG-TTGAAATCTTTCGGGTCATCT
1 TGATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTT-AAATCCTTCGGGTCATCT
* * *
881385 GTAAGCCTTTTGAGCAAGATGATAAGTCCTTCAGGCTATCCATAAGACCTTCGGGTAGGATGTTT
65 GTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTT
881450 TCACA
130 TCACA
881455 CCAAGATGAA
Statistics
Matches: 331, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
214 3 0.01
215 327 0.99
216 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (215 bp):
TGATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
TAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTT
CACATGAATTTGAAAATGAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACTAAGAATGC
AATTTTCAAAATTTCACAAT
Found at i:881764 original size:3 final size:3
Alignment explanation
Indices: 881729--881804 Score: 57
Period size: 3 Copynumber: 25.3 Consensus size: 3
881719 GGGAAATAAA
* * *
881729 TAT TA- TAT TAT AAT AAT TACT GTAT TAT AAT TAT TAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
881774 TAA AAT TAT AAT TAT TAT TAA TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
881805 TTACAACGTT
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
2 4 0.07
3 50 0.86
4 2 0.03
5 2 0.03
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (3 bp):
TAT
Found at i:883367 original size:35 final size:34
Alignment explanation
Indices: 883323--883435 Score: 163
Period size: 35 Copynumber: 3.2 Consensus size: 34
883313 AAAACAATTC
*
883323 TCAATTTCATTCTAAACCACAAATTCTAAAGTAAT
1 TCAATTTCATTCTAAACC-CAAATTCTAAAATAAT
*
883358 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCC-AAATTCTAAAATAAT
* *
883393 TCAATTACATTCTAAAACCCAAATTCTAAAATACT
1 TCAATTTCATTCT-AAACCCAAATTCTAAAATAAT
883428 TCAATTTC
1 TCAATTTC
883436 TGTCTTTTTT
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
34 1 0.01
35 63 0.90
36 6 0.09
ACGTcount: A:0.42, C:0.22, G:0.01, T:0.35
Consensus pattern (34 bp):
TCAATTTCATTCTAAACCCAAATTCTAAAATAAT
Found at i:884492 original size:35 final size:34
Alignment explanation
Indices: 884444--884552 Score: 121
Period size: 35 Copynumber: 3.1 Consensus size: 34
884434 ATTTCTCATT
* *
884444 AAATTGAAGTATTTTAGAATTTGGGGTTTAGAAT-
1 AAATTGAATTATTTT-GAATTTGGGGTTTAAAATG
*
884478 ATAATTGAATTATTTTGGAATTTAGGGTTTAAAATG
1 A-AATTGAATTATTTT-GAATTTGGGGTTTAAAATG
* * *
884514 AAATTGAATTACTTTGAAATTTGGGATTTATAATG
1 AAATTGAATTATTTTG-AATTTGGGGTTTAAAATG
884549 AAAT
1 AAAT
884553 GGAGGAATGT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
34 2 0.03
35 61 0.95
36 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.19, T:0.42
Consensus pattern (34 bp):
AAATTGAATTATTTTGAATTTGGGGTTTAAAATG
Found at i:885137 original size:2 final size:2
Alignment explanation
Indices: 885130--885157 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
885120 ATAAAGCTAT
885130 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
885158 AAAGTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:894294 original size:19 final size:20
Alignment explanation
Indices: 894270--894328 Score: 84
Period size: 19 Copynumber: 2.9 Consensus size: 20
894260 TGCAAAAATG
894270 GTATCGATACCATAATAG-A
1 GTATCGATACCATAATAGTA
894289 GTATCGATACCATAGTATAGTA
1 GTATCGATACCATA--ATAGTA
*
894311 GTATCGATACCATGATAG
1 GTATCGATACCATAATAG
894329 GGATATTCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 14 0.39
20 4 0.11
21 4 0.11
22 14 0.39
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (20 bp):
GTATCGATACCATAATAGTA
Found at i:894920 original size:109 final size:108
Alignment explanation
Indices: 894698--895035 Score: 486
Period size: 109 Copynumber: 3.1 Consensus size: 108
894688 TAATTTGTTT
** * * * * **
894698 ATGAATTTCCGTATGGGCACTTTATGCAATAAACTTAAGATTTATACCAAGTGGATGGAATTTTT
1 ATGAATTTCCGTATGGGCACTTTATG-TGTAAACTTAAAAATTCTACTAAGTGGAT-GAATTTCC
*
894763 GTATGGGCACTTTA--TGTAAACTTAAGAAATTCATACTAAGTAG
64 GTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
*
894806 ATGAATTTCTGTATGGGCACTTTATGTGTAAACTTAAAAATTCTACTAAGTGGATGAATTTCCGT
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAAAATTCTACTAAGTGGATGAATTTCCGT
* *
894871 ATAGGGCACTTTATGTGTAACCTTAAGAAATTCATACTAAATGG
66 AT-GGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
894915 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAA-T-GATGAATTTCC
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAA-AAATTC-TACTAAGTGGATGAATTTCC
*
894978 GTATGGGCGCTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
64 GTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
895023 ATGAATTTCCGTA
1 ATGAATTTCCGTA
895036 ATGACACTTA
Statistics
Matches: 209, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
106 10 0.05
107 33 0.16
108 76 0.36
109 77 0.37
110 7 0.03
111 6 0.03
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (108 bp):
ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAAAATTCTACTAAGTGGATGAATTTCCGT
ATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
Found at i:895044 original size:108 final size:110
Alignment explanation
Indices: 894698--895035 Score: 494
Period size: 108 Copynumber: 3.1 Consensus size: 110
894688 TAATTTGTTT
** * *
894698 ATGAATTTCCGTATGGGCACTTTATGCAATAAACTTAAG--ATTTATACCAAGTGGATGGAATTT
1 ATGAATTTCCGTATGGGCACTTTATG-TGTAAACTTAAGAAATTCATACTAAGTGGAT-GAATTT
** *
894761 TTGTATGGGCACTTTA--TGTAAACTTAAGAAATTCATACTAAGTAG
64 CCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
*
894806 ATGAATTTCTGTATGGGCACTTTATGTGTAAACTTAA-AAATTC-TACTAAGTGGATGAATTTCC
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGGATGAATTTCC
* *
894869 GTATAGGGCACTTTATGTGTAACCTTAAGAAATTCATACTAAATGG
66 GTAT-GGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
894915 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAA-T-GATGAATTTCC
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGGATGAATTTCC
*
894978 GTATGGGCGCTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
66 GTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
895023 ATGAATTTCCGTA
1 ATGAATTTCCGTA
895036 ATGACACTTA
Statistics
Matches: 209, Mismatches: 14, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
106 10 0.05
107 30 0.14
108 79 0.38
109 77 0.37
110 7 0.03
111 6 0.03
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (110 bp):
ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGGATGAATTTCC
GTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
Found at i:895056 original size:55 final size:55
Alignment explanation
Indices: 894698--895035 Score: 494
Period size: 53 Copynumber: 6.2 Consensus size: 55
894688 TAATTTGTTT
** * *
894698 ATGAATTTCCGTATGGGCACTTTATGCAATAAACTTAAG--ATTTATACCAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATG-TGTAAACTTAAGAAATTCATACTAAGTGG
** *
894752 ATGGAATTTTTGTATGGGCACTTTA--TGTAAACTTAAGAAATTCATACTAAGTAG
1 AT-GAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
*
894806 ATGAATTTCTGTATGGGCACTTTATGTGTAAACTTAA-AAATTC-TACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* *
894859 ATGAATTTCCGTATAGGGCACTTTATGTGTAACCTTAAGAAATTCATACTAAATGG
1 ATGAATTTCCGTAT-GGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
894915 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAA-T-G
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
*
894968 ATGAATTTCCGTATGGGCGCTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
895023 ATGAATTTCCGTA
1 ATGAATTTCCGTA
895036 ATGACACTTA
Statistics
Matches: 260, Mismatches: 14, Indels: 19
0.89 0.05 0.06
Matches are distributed among these distances:
52 10 0.04
53 94 0.36
54 46 0.18
55 87 0.33
56 23 0.09
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (55 bp):
ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
Found at i:900435 original size:19 final size:20
Alignment explanation
Indices: 900408--900466 Score: 75
Period size: 22 Copynumber: 2.9 Consensus size: 20
900398 TGCAAAAATG
*
900408 GTATTGATACCATAATAG-A
1 GTATCGATACCATAATAGTA
900427 GTATCGATACCATAATATAGTA
1 GTATCGATACCAT-A-ATAGTA
*
900449 GTATCGATACCATGATAG
1 GTATCGATACCATAATAG
900467 GGATATTGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 12 0.34
20 5 0.14
21 4 0.11
22 14 0.40
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (20 bp):
GTATCGATACCATAATAGTA
Found at i:900953 original size:55 final size:55
Alignment explanation
Indices: 900839--901240 Score: 562
Period size: 55 Copynumber: 7.3 Consensus size: 55
900829 TAATTTGTTT
* *
900839 ATGAATTTCCGTATGGGCACTTTATGTAATAAACTTAAGAAA-TCTATACCAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGT-GTAAACTTAAGAAATTC-ATACTAAGTGG
** *
900895 ATGAATTTTTGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTAG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
*
900950 ATGAATTTCTGTATGGGCACTTTATGTGTAAACTTAA-AAATTCATACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* * *
901004 ATGAATTTTCGTATGGGCACTTTATGTGTAACCTTAAGAAATTCATACTAAATGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
901059 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* *
901114 ATGAATTTTCGTATGGGCGCTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* * * * *
901169 ATGAATTTCTGTAAT-GACACTTTATGTGCAAAAC-T-AGAAAATTCATACTAGGTGT
1 ATGAATTTCCGT-ATGGGCACTTTATGTG-TAAACTTAAG-AAATTCATACTAAGTGG
* *
901224 ATAAATTTCTGTATGGG
1 ATGAATTTCCGTATGGG
901241 TAGTGGGTGT
Statistics
Matches: 315, Mismatches: 25, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
54 54 0.17
55 228 0.72
56 33 0.10
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.36
Consensus pattern (55 bp):
ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
Found at i:901094 original size:164 final size:166
Alignment explanation
Indices: 900839--901195 Score: 553
Period size: 164 Copynumber: 2.2 Consensus size: 166
900829 TAATTTGTTT
* *
900839 ATGAATTTCCGTATGGGCACTTTATGTAATAAACTTAAGAAATCTATACCAAGTGGATGAATTTT
1 ATGAATTTCCGTATGGGCACTTTATGTAATAAACTTAAGAAATCTATACCAAATGGATGAATTTC
*
900904 TGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTAGATGAA-TTTCTGTATGGGC
66 CGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTAGATGAATTTTC-GTATGGGC
900968 ACTTTATGTGTAAACTTAA-AAATTCATACTAAGTGG
130 ACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* * * *
901004 ATGAATTTTCGTATGGGCACTTTATGT-GTAACCTTAAGAAAT-TCATACTAAATGGATGAATTT
1 ATGAATTTCCGTATGGGCACTTTATGTAATAAACTTAAGAAATCT-ATACCAAATGGATGAATTT
*
901067 CCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGGATGAATTTTCGTATGGGC
65 CCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTAGATGAATTTTCGTATGGGC
*
901132 GCTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
130 ACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* *
901169 ATGAATTTCTGTAAT-GACACTTTATGT
1 ATGAATTTCCGT-ATGGGCACTTTATGT
901196 GCAAAACTAG
Statistics
Matches: 176, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
163 1 0.01
164 105 0.60
165 68 0.39
166 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (166 bp):
ATGAATTTCCGTATGGGCACTTTATGTAATAAACTTAAGAAATCTATACCAAATGGATGAATTTC
CGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTAGATGAATTTTCGTATGGGCA
CTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
Found at i:909403 original size:54 final size:54
Alignment explanation
Indices: 909307--909479 Score: 247
Period size: 54 Copynumber: 3.2 Consensus size: 54
909297 CTATTTGTAC
* * * *
909307 TATAAGCACTAAGTGTGCAACCCACGGAATTTATAATATGTTGTTGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACCG
* * * * *
909361 TATAGGCACTAAGTGTGGAACCTACAGAATTCATCATGTGTTGATGAACAACCA
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACCG
* *
909415 TATAGACACTAAGTGTGCAACCCACGGAATTCATCATATATTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACCG
909469 TATAGGCACTA
1 TATAGGCACTA
909480 TACGTACGAA
Statistics
Matches: 102, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 102 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (54 bp):
TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACCG
Found at i:909499 original size:54 final size:52
Alignment explanation
Indices: 909328--909533 Score: 187
Period size: 54 Copynumber: 3.8 Consensus size: 52
909318 AGTGTGCAAC
* * * * **
909328 CCACGGAATTTATAATATGTTGTTGAACAACCGTATAGGCACTAAGTGTGGAA
1 CCACAGAATTCATAATATGTTGATGAACAACCATATAGGCACTAAGT-ACGAA
* * * **
909381 CCTACAGAATTCATCATGTGTTGATGAACAACCATATAGACACTAAGTGTGCAA
1 CC-ACAGAATTCATAATATGTTGATGAACAACCATATAGGCACTAAGTACG-AA
* * * *
909435 CCCACGGAATTCATCATATATTGATGAACAACCGTATAGGCACTATACGTACGAA
1 -CCACAGAATTCATAATATGTTGATGAACAACCATATAGGCACTA-A-GTACGAA
* * **
909490 CCATAGAATTCATAATATGTTTATGAATGACCATATAGGCACTA
1 CCACAGAATTCATAATATGTTGATGAACAACCATATAGGCACTA
909534 TGTGTATATC
Statistics
Matches: 124, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
53 3 0.02
54 113 0.91
55 5 0.04
56 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (52 bp):
CCACAGAATTCATAATATGTTGATGAACAACCATATAGGCACTAAGTACGAA
Found at i:909502 original size:108 final size:108
Alignment explanation
Indices: 909313--909538 Score: 294
Period size: 108 Copynumber: 2.1 Consensus size: 108
909303 GTACTATAAG
* * * **
909313 CACTAAGTGTGCAACCCACGGAATTTATAATATGTTGTTGAACAACCGTATAGGCACTAAGTGTG
1 CACTAAGTGTGCAACCCACGGAATTCATAATATATTGATGAACAACCGTATAGGCACTAAGTGAC
* *
909378 GAACCTACAGAATTCATCATGTGTTGATGAACAACCATATAGA
66 GAACCTACAGAATTCATAATATGTTGATGAACAACCATATAGA
*
909421 CACTAAGTGTGCAACCCACGGAATTCATCATATATTGATGAACAACCGTATAGGCACTATACGT-
1 CACTAAGTGTGCAACCCACGGAATTCATAATATATTGATGAACAACCGTATAGGCACTA-A-GTG
* * ** *
909485 ACGAACC-ATAGAATTCATAATATGTTTATGAATGACCATATAGG
64 ACGAACCTACAGAATTCATAATATGTTGATGAACAACCATATAGA
*
909529 CACTATGTGT
1 CACTAAGTGT
909539 ATATCTCAAT
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
108 94 0.92
109 6 0.06
110 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (108 bp):
CACTAAGTGTGCAACCCACGGAATTCATAATATATTGATGAACAACCGTATAGGCACTAAGTGAC
GAACCTACAGAATTCATAATATGTTGATGAACAACCATATAGA
Found at i:914212 original size:55 final size:55
Alignment explanation
Indices: 914105--914317 Score: 295
Period size: 55 Copynumber: 3.9 Consensus size: 55
914095 AGTTTAAAAA
*
914105 ATTCATCAACTCATGATGAATTTCGTGGG-TTGCACACATAGTGCATGTACGGTT
1 ATTCATCAACTCATGATGAATTCCGTGGGTTTGCACACATAGTGCATGTACGGTT
** * * **
914159 ATTTTTCAACTCATGATGAATCCCATGGGTTTGCACACATAGTGGTTGTACGGTT
1 ATTCATCAACTCATGATGAATTCCGTGGGTTTGCACACATAGTGCATGTACGGTT
* *
914214 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATGTACGATT
1 ATTCATCAACTCATGATGAATTCCGTGGGTTTGCACACATAGTGCATGTACGGTT
* ** *
914269 ATTCATCAACTC-TGATGAATTCCGTGGATTCACACACACAGTGCATGTA
1 ATTCATCAACTCATGATGAATTCCGTGGGTTTGCACACATAGTGCATGTA
914318 TTACACATAG
Statistics
Matches: 140, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
54 58 0.41
55 82 0.59
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (55 bp):
ATTCATCAACTCATGATGAATTCCGTGGGTTTGCACACATAGTGCATGTACGGTT
Found at i:914305 original size:109 final size:109
Alignment explanation
Indices: 914105--914311 Score: 299
Period size: 109 Copynumber: 1.9 Consensus size: 109
914095 AGTTTAAAAA
* * **
914105 ATTCATCAACTCATGATGAATTTCGTGGGTTGCACACATAGTGCATGTACGGTTATTTTTCAACT
1 ATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCATGTACGATTATTCATCAACT
* ** *
914170 CATGATGAATCCCATGGGTTTGCACACATAGTGGTTGTACGGTT
66 CATGATGAATCCCATGGATTCACACACACAGTGGTTGTACGGTT
*
914214 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATGTACGATTATTCATCAAC
1 ATTCATCAACTCATGATGAATTCCGTGG-GTTGCACACATAGTGCATGTACGATTATTCATCAAC
* *
914279 TC-TGATGAATTCCGTGGATTCACACACACAGTG
65 TCATGATGAATCCCATGGATTCACACACACAGTG
914312 CATGTATTAC
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
109 52 0.60
110 34 0.40
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (109 bp):
ATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCATGTACGATTATTCATCAACT
CATGATGAATCCCATGGATTCACACACACAGTGGTTGTACGGTT
Found at i:914687 original size:22 final size:22
Alignment explanation
Indices: 914645--914698 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
914635 TGGCTCCTCA
*
914645 GTATCGATAC--CTATACCATG
1 GTATCGATACTACCATACCATG
*
914665 GTATCGATACTACCATACTATG
1 GTATCGATACTACCATACCATG
*
914687 GTACCGATACTA
1 GTATCGATACTA
914699 TGTTATGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 10 0.34
22 19 0.66
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (22 bp):
GTATCGATACTACCATACCATG
Found at i:917818 original size:54 final size:53
Alignment explanation
Indices: 917706--917938 Score: 231
Period size: 54 Copynumber: 4.4 Consensus size: 53
917696 CTATTAGTAC
* * * *
917706 TATAAGCACTAAGTGCGTAACCCACAGAATTCATC--ATGTTGATGAATAACCG
1 TATAGGCACTAAGTGTGCAACCCACA-AATTCATCATATGTTGATGAACAACCG
* *
917758 TTTAGGCACAAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCAC-AAATTCATCATATGTTGATGAACAACCG
* *
917812 TATAGGCACTAAGTGTGCAACCCACAAAATTCATCATATATTGATGAACAACTG
1 TATAGGCACTAAGTGTGCAACCCAC-AAATTCATCATATGTTGATGAACAACCG
* ** * * * **
917866 TATAGGCACTATA-TGTACGAA-CCATGGAATTAATAATATGTTTATGAATGACCG
1 TATAGGCACTA-AGTGTGC-AACCCA-CAAATTCATCATATGTTGATGAACAACCG
*
917920 TATAGGCACTACGTGTGCA
1 TATAGGCACTAAGTGTGCA
917939 GCTCAACGAA
Statistics
Matches: 151, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
52 28 0.19
53 2 0.01
54 118 0.78
55 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (53 bp):
TATAGGCACTAAGTGTGCAACCCACAAATTCATCATATGTTGATGAACAACCG
Found at i:920943 original size:152 final size:153
Alignment explanation
Indices: 920763--921071 Score: 593
Period size: 152 Copynumber: 2.0 Consensus size: 153
920753 AAACACGTAA
920763 TTTACTCAATAAAATAATGGGACCCATAAATTTATTAATGTGTCAATTATCTTTATAAAATTTTA
1 TTTACTCAATAAAATAATGGGACCCATAAATTTATTAATGTGTCAATTATCTTTATAAAATTTTA
920828 TATTAACGTTAATAAATTGTTCTTCCATAAAATACTAATTTAATATTTCTTTCTCAAAATT-AAA
66 TATTAACGTTAATAAATTGTTCTTCCATAAAATACTAATTTAATATTTCTTTCTCAAAATTAAAA
920892 AAAAAATCAATTAAACTCTTTAG
131 AAAAAATCAATTAAACTCTTTAG
920915 TTTACTCAATAAAATAATGGGACCCATAAATTTATTAATGTGTCAATTATCTTTATAAAATTTTA
1 TTTACTCAATAAAATAATGGGACCCATAAATTTATTAATGTGTCAATTATCTTTATAAAATTTTA
920980 TATTAACGTTAATAAATTGTTCTTCCATAAAATACTAATTTAATATTTCTTTCTCAAAATTCAAA
66 TATTAACGTTAATAAATTGTTCTTCCATAAAATACTAATTTAATATTTCTTTCTCAAAATT-AAA
*
921045 AAAAAAATCAATTAAACTTTTTAG
130 AAAAAAATCAATTAAACTCTTTAG
921069 TTT
1 TTT
921072 TGGTCTTTCC
Statistics
Matches: 154, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
152 126 0.82
154 28 0.18
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.41
Consensus pattern (153 bp):
TTTACTCAATAAAATAATGGGACCCATAAATTTATTAATGTGTCAATTATCTTTATAAAATTTTA
TATTAACGTTAATAAATTGTTCTTCCATAAAATACTAATTTAATATTTCTTTCTCAAAATTAAAA
AAAAAATCAATTAAACTCTTTAG
Found at i:921623 original size:20 final size:21
Alignment explanation
Indices: 921586--921624 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
921576 GATGGTCTTG
*
921586 ATGAAGGATGTTGATGATGAA
1 ATGAAGGATGGTGATGATGAA
*
921607 ATGAA-GATGGTGGTGATG
1 ATGAAGGATGGTGATGATG
921625 TTGTATCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.28
Consensus pattern (21 bp):
ATGAAGGATGGTGATGATGAA
Found at i:925814 original size:25 final size:24
Alignment explanation
Indices: 925761--925821 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
925751 CCTTGGCTTG
925761 CTTTTCTCTTTTTGGAATCTTTTT
1 CTTTTCTCTTTTTGGAATCTTTTT
*
925785 TTTTTCTTCTTTTAT-GAAT-TTTCTT
1 CTTTTC-TCTTTT-TGGAATCTTT-TT
*
925810 CTTTTGTCTTTT
1 CTTTTCTCTTTT
925822 CTTTCTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 14 0.45
25 16 0.52
26 1 0.03
ACGTcount: A:0.08, C:0.15, G:0.07, T:0.70
Consensus pattern (24 bp):
CTTTTCTCTTTTTGGAATCTTTTT
Found at i:925831 original size:17 final size:15
Alignment explanation
Indices: 925778--925832 Score: 51
Period size: 17 Copynumber: 3.5 Consensus size: 15
925768 CTTTTTGGAA
925778 TCTTTTT-TTTTTCT
1 TCTTTTTGTTTTTCT
*
925792 TCTTTTATGAATTTTCT
1 TCTTTT-TG-TTTTTCT
925809 TC-TTTTGTCTTTTCTT
1 TCTTTTTGT-TTTTC-T
925825 TCTTTTTG
1 TCTTTTTG
925833 CACTCCAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 6 0.18
15 8 0.24
16 6 0.18
17 13 0.39
ACGTcount: A:0.05, C:0.15, G:0.05, T:0.75
Consensus pattern (15 bp):
TCTTTTTGTTTTTCT
Found at i:930639 original size:2 final size:2
Alignment explanation
Indices: 930632--930670 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
930622 ACTTATTTTC
930632 AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
930671 CCTATAGTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:930640 original size:23 final size:23
Alignment explanation
Indices: 930595--930640 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
930585 TTATACCTAT
*
930595 AGATACTTATTTCATATGTTATA
1 AGATACTTATTTCATATGATATA
930618 AGATACTTATTTTCATAT-ATATA
1 AGATACTTA-TTTCATATGATATA
930641 TATATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.48
Consensus pattern (23 bp):
AGATACTTATTTCATATGATATA
Found at i:930657 original size:15 final size:15
Alignment explanation
Indices: 930632--930670 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
930622 ACTTATTTTC
930632 ATATA-TATATATAT
1 ATATATTATATATAT
930646 ATATATTATATATAT
1 ATATATTATATATAT
930661 ATATATTATA
1 ATATATTATA
930671 CCTATAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATATTATATATAT
Found at i:930676 original size:15 final size:13
Alignment explanation
Indices: 930632--930664 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
930622 ACTTATTTTC
930632 ATATATA-TATAT
1 ATATATATTATAT
930644 ATATATATTATAT
1 ATATATATTATAT
930657 ATATATAT
1 ATATATAT
930665 ATTATACCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATATATTATAT
Found at i:930847 original size:16 final size:16
Alignment explanation
Indices: 930826--930875 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
930816 TTGGGAGCTA
930826 CATGAAGATGCCTTTT
1 CATGAAGATGCCTTTT
* *
930842 CATGAAGATG-CTGTC
1 CATGAAGATGCCTTTT
930857 CATGAAGATGCCTTTT
1 CATGAAGATGCCTTTT
930873 CAT
1 CAT
930876 CTAGAAGCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 13 0.45
16 16 0.55
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (16 bp):
CATGAAGATGCCTTTT
Found at i:930862 original size:15 final size:15
Alignment explanation
Indices: 930826--930867 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
930816 TTGGGAGCTA
* *
930826 CATGAAGATGCCTTTT
1 CATGAAGATG-CTGTC
930842 CATGAAGATGCTGTC
1 CATGAAGATGCTGTC
930857 CATGAAGATGC
1 CATGAAGATGC
930868 CTTTTCATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (15 bp):
CATGAAGATGCTGTC
Found at i:931556 original size:22 final size:22
Alignment explanation
Indices: 931531--931573 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
931521 CTTCATTTCA
*
931531 TCATCAACATCATCAACATCCT
1 TCATCAACACCATCAACATCCT
* *
931553 TCATCAAGACCATCATCATCC
1 TCATCAACACCATCAACATCC
931574 CATAATTCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.37, G:0.02, T:0.26
Consensus pattern (22 bp):
TCATCAACACCATCAACATCCT
Found at i:934781 original size:33 final size:33
Alignment explanation
Indices: 934736--934804 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
934726 TAACTTATTT
* *
934736 ACTACTTCTGAGGACAAGCATTCAAGGACTTGA
1 ACTACTTATGAGGACAAGAATTCAAGGACTTGA
934769 ACTACTTATGAGGACAAGAATTCAAGGACTTGA
1 ACTACTTATGAGGACAAGAATTCAAGGACTTGA
934802 ACT
1 ACT
934805 TACCATAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (33 bp):
ACTACTTATGAGGACAAGAATTCAAGGACTTGA
Found at i:940764 original size:22 final size:21
Alignment explanation
Indices: 940732--940772 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
940722 TCATCTCTAT
940732 TTCATCATCAACACCATCATC
1 TTCATCATCAACACCATCATC
*
940753 TTCATTCATCAAGACCATCA
1 TTCA-TCATCAACACCATCA
940773 ATTCCGTAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.29
Consensus pattern (21 bp):
TTCATCATCAACACCATCATC
Found at i:946839 original size:57 final size:57
Alignment explanation
Indices: 946695--946903 Score: 232
Period size: 57 Copynumber: 3.6 Consensus size: 57
946685 TTTGGATGAA
** *
946695 TTTGAGGATGAAATTGGAA-GATTAAAAAGTTT-GGGACCAATTTAGAATGAGAGTCATAG
1 TTTG-GGATGAAATTGGAATGATT-AAAAGTTTAATGACTAATTTAGAAT--GAGTCATAG
* *
946754 TTTGGGATGAAGTTAGAATG-TTCAAAAGTTTAATGACTAATTTAGAATGAGTCATAG
1 TTTGGGATGAAATTGGAATGATT-AAAAGTTTAATGACTAATTTAGAATGAGTCATAG
* *
946811 TTTGAGGATGAAATTGGAATG-TTCAAAGTTTAATGAATAATTTAGAATGA-TCATAG
1 TTTG-GGATGAAATTGGAATGATTAAAAGTTTAATGACTAATTTAGAATGAGTCATAG
*
946867 TTTGGGACT-AAAGTTGGAATGTTTAAAAGTTTAATGA
1 TTTGGGA-TGAAA-TTGGAATGATTAAAAGTTTAATGA
946904 GGATCATAGT
Statistics
Matches: 133, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
55 6 0.05
56 19 0.14
57 52 0.39
58 38 0.29
59 18 0.14
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.34
Consensus pattern (57 bp):
TTTGGGATGAAATTGGAATGATTAAAAGTTTAATGACTAATTTAGAATGAGTCATAG
Found at i:946858 original size:28 final size:28
Alignment explanation
Indices: 946766--946869 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 28
946756 TGGGATGAAG
*
946766 TTAGAATGTTCAAAAGTTTAATGACTAAT
1 TTAGAATGTTC-AAAGTTTAATGAATAAT
* * * * *
946795 TTAGAATGAGTCATAGTTTGA-GGATGAAA
1 TTAGAATG-TTCAAAGTTTAATGAAT-AAT
*
946824 TTGGAATGTTCAAAGTTTAATGAATAAT
1 TTAGAATGTTCAAAGTTTAATGAATAAT
* *
946852 TTAGAATGATCATAGTTT
1 TTAGAATGTTCAAAGTTT
946870 GGGACTAAAG
Statistics
Matches: 57, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
28 28 0.49
29 27 0.47
30 2 0.04
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (28 bp):
TTAGAATGTTCAAAGTTTAATGAATAAT
Found at i:947894 original size:31 final size:30
Alignment explanation
Indices: 947843--947919 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 30
947833 TAAAATTAGG
* ***
947843 AAATTATTAAAAACG-AAAAAAATATAAATTT
1 AAATT-TTAAAAA-GAAAAAAAAGATAAAAGA
947874 AAATTTTAAAAAGAACAAAAAAGATAAAAGA
1 AAATTTTAAAAAGAA-AAAAAAGATAAAAGA
*
947905 AAATGTTAAAAAGAA
1 AAATTTTAAAAAGAA
947920 GTAAATGTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 1 0.03
30 8 0.21
31 30 0.77
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.22
Consensus pattern (30 bp):
AAATTTTAAAAAGAAAAAAAAGATAAAAGA
Found at i:947956 original size:26 final size:26
Alignment explanation
Indices: 947904--947968 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
947894 AAGATAAAAG
* **
947904 AAAATGTTAAAAAGAAGTAAATGTAA
1 AAAATGTAAAAAAGAAGTAAAAATAA
947930 AAAATGCTAAAAAAGAA-TAAAAATAA
1 AAAATG-TAAAAAAGAAGTAAAAATAA
947956 ACAAATG-AAAAAA
1 A-AAATGTAAAAAA
947969 TAAGGGACCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 6 0.18
26 14 0.41
27 14 0.41
ACGTcount: A:0.69, C:0.03, G:0.11, T:0.17
Consensus pattern (26 bp):
AAAATGTAAAAAAGAAGTAAAAATAA
Found at i:947968 original size:27 final size:27
Alignment explanation
Indices: 947912--947968 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
947902 AGAAAATGTT
** **
947912 AAAAAGAAGTAAATGTAAAAAATGCTA
1 AAAAAGAAGTAAAAATAAAAAATGAAA
947939 AAAAAGAA-TAAAAATAAACAAATGAAA
1 AAAAAGAAGTAAAAATAAA-AAATGAAA
947966 AAA
1 AAA
947969 TAAGGGACCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.72, C:0.04, G:0.11, T:0.14
Consensus pattern (27 bp):
AAAAAGAAGTAAAAATAAAAAATGAAA
Found at i:949046 original size:10 final size:10
Alignment explanation
Indices: 949031--949077 Score: 62
Period size: 10 Copynumber: 4.9 Consensus size: 10
949021 GACCTAGAAA
949031 AAATAAAAAT
1 AAATAAAAAT
949041 AAAT--AAAT
1 AAATAAAAAT
* *
949049 AAATAAATAG
1 AAATAAAAAT
949059 AAATAAAAAT
1 AAATAAAAAT
949069 AAATAAAAA
1 AAATAAAAA
949078 AAAAGTATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
8 8 0.26
10 23 0.74
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:949238 original size:36 final size:37
Alignment explanation
Indices: 949125--949595 Score: 575
Period size: 37 Copynumber: 13.1 Consensus size: 37
949115 AAACCTAAAC
*
949125 ATGTTTTCTAAA--ATATATTATATATATTTTCCAAAA
1 ATGTTTTCAAAACTATATATTATATATATTTT-CAAAA
* * * * * *
949161 ACGATGT-AAAA-T-TATATTATACACATTTTCGAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTCAAAA
* *
949195 ATGTTTTCAAAACCATATATTATATATATTTT-GAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTCAAAA
*
949231 ATGTTTTCACAACTATATATTATATATATTTTCAAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTCAAAA
* *
949268 ATGTTTTCAAAACCATATATTATATATATTTTGAAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTCAAAA
*
949305 ATGTTTTCACAACTATATATTATATATATTTTCAAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTCAAAA
949342 ATGTTTTCAAAACTATATATTATATATATTTTCGAAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTC-AAAA
*
949380 ATGTTTTCAAAACTATATATTATATAATTTTTTTCAAAA
1 ATGTTTTCAAAACTATATATTATAT-A-TATTTTCAAAA
* *
949419 ATATATTCAAAAC--TATA-TATATATATTTTCAAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTCAAAA
*
949453 ATG-TTTCAAAA--A-CTA-TAT-TATATTTTCAAAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTC-AAAA
949485 ATGTTTTCAAAACTATATA-T-TATATATTTTCAAAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTC-AAAA
*
949521 ATATTTTCAAAACTATATA-T-TATATATTTTCAAAA
1 ATGTTTTCAAAACTATATATTATATATATTTTCAAAA
*
949556 ATGTTTTCAAAACTATATATATATATATATATTCAAAA
1 ATGTTTTCAAAACTATATAT-TATATATATTTTCAAAA
949594 AT
1 AT
949596 ATATATTATA
Statistics
Matches: 383, Mismatches: 34, Indels: 34
0.85 0.08 0.08
Matches are distributed among these distances:
31 9 0.02
32 12 0.03
33 15 0.04
34 20 0.05
35 47 0.12
36 90 0.23
37 123 0.32
38 45 0.12
39 16 0.04
40 6 0.02
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (37 bp):
ATGTTTTCAAAACTATATATTATATATATTTTCAAAA
Found at i:949526 original size:13 final size:13
Alignment explanation
Indices: 949508--949532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
949498 TATATATTAT
949508 ATATTTTCAAAAA
1 ATATTTTCAAAAA
949521 ATATTTTCAAAA
1 ATATTTTCAAAA
949533 CTATATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATTTTCAAAAA
Found at i:949590 original size:26 final size:25
Alignment explanation
Indices: 949561--949610 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
949551 CAAAAATGTT
*
949561 TTCAAAACTATATATATATATATATA
1 TTCAAAAATATATAT-TATATATATA
949587 TTCAAAAATATATATTATATATAT
1 TTCAAAAATATATATTATATATAT
949611 TATATACTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (25 bp):
TTCAAAAATATATATTATATATATA
Found at i:950842 original size:22 final size:22
Alignment explanation
Indices: 950811--950853 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
950801 GCTGAACTGA
* *
950811 ATCCTTTCTAAATTGGCTCTCG
1 ATCCTGTCTAAATTGGATCTCG
950833 ATCCTGTCTAAATTGGATCTC
1 ATCCTGTCTAAATTGGATCTC
950854 AAACCCGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (22 bp):
ATCCTGTCTAAATTGGATCTCG
Found at i:960596 original size:20 final size:21
Alignment explanation
Indices: 960571--960610 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
960561 AAGAAATAGA
960571 TTCTGGATT-AGT-AGTATCGG
1 TTCTGG-TTGAGTGAGTATCGG
960591 TTCTGGTTGAGTGAGTATCG
1 TTCTGGTTGAGTGAGTATCG
960611 ATACTACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 9 0.50
21 7 0.39
ACGTcount: A:0.17, C:0.10, G:0.33, T:0.40
Consensus pattern (21 bp):
TTCTGGTTGAGTGAGTATCGG
Found at i:966731 original size:8 final size:8
Alignment explanation
Indices: 966718--966758 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
966708 TGAAATTCTT
966718 TTCTTTTC
1 TTCTTTTC
966726 TTCTTTTC
1 TTCTTTTC
966734 TTCTTTTC
1 TTCTTTTC
*
966742 TGATTTTTTC
1 T--TCTTTTC
966752 TTCTTTT
1 TTCTTTT
966759 TGTATTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 22 0.76
10 7 0.24
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (8 bp):
TTCTTTTC
Found at i:966734 original size:18 final size:18
Alignment explanation
Indices: 966713--966777 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 18
966703 TCTTTTGAAA
*
966713 TTCTTTTCTTTTCTTCTT
1 TTCTTTTCTTTTCTTATT
*
966731 TTC--TTCTTTTCTGATT
1 TTCTTTTCTTTTCTTATT
966747 TT-TTCTTCTTTT-TGTATTT
1 TTCTT-TTCTTTTCT-TA-TT
966766 TTCTTTTCTTTT
1 TTCTTTTCTTTT
966778 TGTACTCCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
16 13 0.34
17 1 0.03
18 11 0.29
19 11 0.29
20 2 0.05
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (18 bp):
TTCTTTTCTTTTCTTATT
Found at i:966767 original size:19 final size:18
Alignment explanation
Indices: 966729--966781 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
966719 TCTTTTCTTC
966729 TTTTCTTCTTTTCTG-ATT
1 TTTTCTTCTTTT-TGTATT
966747 TTTTCTTCTTTTTGTATT
1 TTTTCTTCTTTTTGTATT
*
966765 TTTCTTTTCTTTTTGTA
1 TTT-TCTTCTTTTTGTA
966782 CTCCAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 2 0.06
18 18 0.56
19 12 0.38
ACGTcount: A:0.06, C:0.13, G:0.06, T:0.75
Consensus pattern (18 bp):
TTTTCTTCTTTTTGTATT
Found at i:969262 original size:9 final size:9
Alignment explanation
Indices: 969240--969275 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
969230 TTGTATGAAT
969240 TAATGATAA
1 TAATGATAA
* *
969249 GAATGTTAA
1 TAATGATAA
969258 TAATGATAA
1 TAATGATAA
969267 TAATGATAA
1 TAATGATAA
969276 GTGTACATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (9 bp):
TAATGATAA
Found at i:971335 original size:32 final size:30
Alignment explanation
Indices: 971294--971367 Score: 85
Period size: 32 Copynumber: 2.4 Consensus size: 30
971284 ATTTAAATTT
*
971294 AAATTTTAAAAAGAACAAAAAAGATAAAAAGA
1 AAATGTTAAAAAGAACAAAAAAG-TAAAAA-A
** *
971326 AAATGTTAAAAAGAAGTAAAATGTAAAAAA
1 AAATGTTAAAAAGAACAAAAAAGTAAAAAA
*
971356 AAATGCTAAAAA
1 AAATGTTAAAAA
971368 ATAAAAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 12 0.32
31 6 0.16
32 19 0.51
ACGTcount: A:0.69, C:0.03, G:0.11, T:0.18
Consensus pattern (30 bp):
AAATGTTAAAAAGAACAAAAAAGTAAAAAA
Found at i:971861 original size:10 final size:10
Alignment explanation
Indices: 971848--971901 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
971838 TCCATCTTCT
971848 TTTTCTTCAC
1 TTTTCTTCAC
971858 TTTTCTT--C
1 TTTTCTTCAC
*
971866 TTCTTCTT-TC
1 TT-TTCTTCAC
*
971876 TTTCTCTTCAT
1 TTT-TCTTCAC
971887 TTTTCTTCAC
1 TTTTCTTCAC
971897 TTTTC
1 TTTTC
971902 CTCTTATCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
8 3 0.08
9 6 0.16
10 25 0.68
11 3 0.08
ACGTcount: A:0.06, C:0.28, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTCTTCAC
Found at i:971863 original size:16 final size:16
Alignment explanation
Indices: 971844--971893 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
971834 TTCTTCCATC
971844 TTCTTTTTCTTCACTT
1 TTCTTTTTCTTCACTT
*
971860 TTCTTCTTCTT--C-T
1 TTCTTTTTCTTCACTT
* *
971873 TTCTTTCTCTTCATTT
1 TTCTTTTTCTTCACTT
971889 TTCTT
1 TTCTT
971894 CACTTTTCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
13 10 0.37
14 1 0.04
16 16 0.59
ACGTcount: A:0.04, C:0.26, G:0.00, T:0.70
Consensus pattern (16 bp):
TTCTTTTTCTTCACTT
Found at i:971890 original size:39 final size:41
Alignment explanation
Indices: 971819--971906 Score: 119
Period size: 39 Copynumber: 2.2 Consensus size: 41
971809 CTGGCTCTTC
971819 TTCTTCTTCAATCTATTCTTCCATCTTCTTTTTCTTCACTT
1 TTCTTCTTCAATCTATTCTTCCATCTTCTTTTTCTTCACTT
* *
971860 TTCTTCTTC-TTCT-TTCTTTC-TCTTCATTTTTCTTCACTT
1 TTCTTCTTCAATCTATTCTTCCATCTTC-TTTTTCTTCACTT
*
971899 TTCCTCTT
1 TTCTTCTT
971907 ATCAATATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
38 5 0.12
39 26 0.60
40 3 0.07
41 9 0.21
ACGTcount: A:0.08, C:0.30, G:0.00, T:0.62
Consensus pattern (41 bp):
TTCTTCTTCAATCTATTCTTCCATCTTCTTTTTCTTCACTT
Found at i:974977 original size:37 final size:37
Alignment explanation
Indices: 974915--975284 Score: 443
Period size: 37 Copynumber: 9.9 Consensus size: 37
974905 TTTCAAAACC
*
974915 CAAACATGTTTTCTAAAA-TATATATTATATATATTTT
1 CAAAAATGTTTTC-AAAACTATATATTATATATATTTT
** **
974952 CCAAAAACATTTT-AAAACGT-TATATTATCCACT-TTTT
1 -CAAAAATGTTTTCAAAAC-TATATATTATATA-TATTTT
* **
974989 CGAAAATGTTTTCAAAACCGTATATTATATATATTTT
1 CAAAAATGTTTTCAAAACTATATATTATATATATTTT
* *
975026 TAAAAATGTTTTCACAACTATATATTATATATATTTT
1 CAAAAATGTTTTCAAAACTATATATTATATATATTTT
975063 CAAAAATGTTTTCAAAACTATATATTATATATATTTT
1 CAAAAATGTTTTCAAAACTATATATTATATATATTTT
975100 CGAAAAATGTTTTCAAAACTATATATTATATATATTTT
1 C-AAAAATGTTTTCAAAACTATATATTATATATATTTT
*
975138 CGAAAATTGTTTTTCAAAACTATATATTATATATATATATTT
1 C-AAAAATG-TTTTCAAAACTATATA-T-TATATATAT-TTT
* *
975180 TAAAAA---ATTCAAAACTATATATTATATATATTTT
1 CAAAAATGTTTTCAAAACTATATATTATATATATTTT
*
975214 CAAAAATTGTTTCCAAAACTATATA-T-TATATATTTT
1 CAAAAA-TGTTTTCAAAACTATATATTATATATATTTT
975250 CAAAAAATGTTTTCAAAACTATATATTATATATAT
1 C-AAAAATGTTTTCAAAACTATATATTATATATAT
975285 ATATATATAT
Statistics
Matches: 288, Mismatches: 26, Indels: 36
0.82 0.07 0.10
Matches are distributed among these distances:
34 8 0.03
35 9 0.03
36 43 0.15
37 120 0.42
38 75 0.26
39 16 0.06
40 1 0.00
41 13 0.05
42 3 0.01
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (37 bp):
CAAAAATGTTTTCAAAACTATATATTATATATATTTT
Found at i:975274 original size:2 final size:2
Alignment explanation
Indices: 975269--975300 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
975259 TTTTCAAAAC
975269 TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
975301 TCAAAAATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:975310 original size:51 final size:52
Alignment explanation
Indices: 975233--975341 Score: 188
Period size: 51 Copynumber: 2.2 Consensus size: 52
975223 TTTCCAAAAC
*
975233 TATATAT-TATATATTTTCAAAAAATGTTTTCAAAACTATATATTATATATA
1 TATATATATATATATATTCAAAAAATGTTTTCAAAACTATATATTATATATA
975284 TATATATATATATATATTC-AAAAATGTTTTCAAAACTATATATTATATATA
1 TATATATATATATATATTCAAAAAATGTTTTCAAAACTATATATTATATATA
975335 T-TATATA
1 TATATATA
975342 CTGAATAAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
50 6 0.11
51 40 0.71
52 10 0.18
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.47
Consensus pattern (52 bp):
TATATATATATATATATTCAAAAAATGTTTTCAAAACTATATATTATATATA
Found at i:975324 original size:114 final size:109
Alignment explanation
Indices: 974985--975306 Score: 387
Period size: 114 Copynumber: 2.9 Consensus size: 109
974975 ATTATCCACT
* ** ** *
974985 TTTTCGAAAATGTTTTCAAAACCGTATATTATATATATTTTTAAAAATGTTTTCACAACTATATA
1 TTTTCAAAAATGTTTTCAAAACTATATATTATATAT-TTTCAAAAAATGTTTTCAAAACTATATA
* * *
975050 TTATATATAT-T-TTCAAAAATGTTTTCAAAACTATATATTATATATA
65 TTATATATATATATT--ATAATATATTCAAAAC-ATATATTATATATA
* *
975096 TTTTCGAAAAATGTTTTCAAAACTATATATTATATATATTTTCGAAAATTGTTTTTCAAAACTAT
1 TTTTC-AAAAATGTTTTCAAAACTATATA-T-TATATATTTTCAAAAAATG-TTTTCAAAACTAT
* * *
975161 ATATTATATATATATATTTTAAAAAATTCAAAACTATATATTATATATA
62 ATATTATATATATATATTATAATATATTCAAAAC-ATATATTATATATA
*
975210 TTTTCAAAAATTGTTTCCAAAACTATATATTATATATTTTCAAAAAATGTTTTCAAAACTATATA
1 TTTTCAAAAA-TGTTTTCAAAACTATATATTATATATTTTCAAAAAATGTTTTCAAAACTATATA
975275 TTATATATATATATATATATATATATTCAAAA
65 TTATATATATATAT-TATA-ATATATTCAAAA
975307 ATGTTTTCAA
Statistics
Matches: 183, Mismatches: 19, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
111 35 0.19
112 40 0.22
113 26 0.14
114 79 0.43
115 1 0.01
116 2 0.01
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.45
Consensus pattern (109 bp):
TTTTCAAAAATGTTTTCAAAACTATATATTATATATTTTCAAAAAATGTTTTCAAAACTATATAT
TATATATATATATTATAATATATTCAAAACATATATTATATATA
Found at i:977560 original size:47 final size:46
Alignment explanation
Indices: 977484--977586 Score: 127
Period size: 47 Copynumber: 2.2 Consensus size: 46
977474 GAGTCGAGGG
* * **
977484 TTCTACGTGGTCCTTTCGGAAAATTCTATGTGGTCCTTTAGGACAAT
1 TTCTACGTGGTCCTTACGGAAAATACTATGTGGTCCTCCAGGAC-AT
* *
977531 TTCTACGTGGT-CTTACGGGATAATACTATGTGGTCCTCCGGGACAT
1 TTCTACGTGGTCCTTAC-GGAAAATACTATGTGGTCCTCCAGGACAT
977577 TTCTACGTGG
1 TTCTACGTGG
977587 CACTTCGGTG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
46 16 0.33
47 33 0.67
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.36
Consensus pattern (46 bp):
TTCTACGTGGTCCTTACGGAAAATACTATGTGGTCCTCCAGGACAT
Found at i:977586 original size:23 final size:23
Alignment explanation
Indices: 977484--977610 Score: 91
Period size: 23 Copynumber: 5.4 Consensus size: 23
977474 GAGTCGAGGG
*
977484 TTCTACGTGGTCCTTTC-GGAAAA
1 TTCTACGTGGTCC-TTCGGGACAA
* **
977507 TTCTATGTGGTCCTTTAGGACAA
1 TTCTACGTGGTCCTTCGGGACAA
*
977530 TTTCTACGTGGT-CTTACGGGATAA
1 -TTCTACGTGGTCCTT-CGGGACAA
* * * *
977554 TACTATGTGGTCCTCCGGGACAT
1 TTCTACGTGGTCCTTCGGGACAA
977577 TTCTACGTGG-CACTTCGGTG-CATA
1 TTCTACGTGGTC-CTTCGG-GACA-A
977601 TTCTACGTGG
1 TTCTACGTGG
977611 CACTTCAGTA
Statistics
Matches: 81, Mismatches: 16, Indels: 13
0.74 0.15 0.12
Matches are distributed among these distances:
22 3 0.04
23 50 0.62
24 28 0.35
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.35
Consensus pattern (23 bp):
TTCTACGTGGTCCTTCGGGACAA
Found at i:979329 original size:22 final size:22
Alignment explanation
Indices: 979301--979421 Score: 215
Period size: 22 Copynumber: 5.5 Consensus size: 22
979291 ATCTACATTC
979301 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
979323 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
979345 TTCAAAGATGATAGATTCTCTC
1 TTCAAAGATGATAGATTCTCTT
979367 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
979389 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
979411 TTCAAAGATGA
1 TTCAAAGATGA
979422 AAGCTTTATC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 93 1.00
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:980627 original size:113 final size:113
Alignment explanation
Indices: 980234--980756 Score: 658
Period size: 112 Copynumber: 4.6 Consensus size: 113
980224 TTCCAGAAGG
*
980234 GTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
980299 ACTTTTTGCTCGAATTCATCACTCGATGGATCAGCATTGCCAGGTCGA
66 ACTTTTTGCTCGAATTCATCACTCGATGGATCAGCATTGCCAGGTAGA
* * *
980347 GTTCATAATAAGAAGAACTCATCTGAAGAATG-AGAAGAAGTTCATAATAAGAAGAACTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* * * *
980411 ACTTTTTGCTTGAATTTATCACTCGATGGATCAACATTGCCA-GAAGA
66 ACTTTTTGCTCGAATTCATCACTCGATGGATCAGCATTGCCAGGTAGA
* *
980458 GTTCATAATGAG-AGAACTCATCTGAAGAAGGAAGAATAAGTTCATAATGAGAAGAACTTATTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* *
980522 ACTTTTTGCTCGAATTCACCATTCGATGGATCAGCATTGCCAGGTAGA
66 ACTTTTTGCTCGAATTCATCACTCGATGGATCAGCATTGCCAGGTAGA
* *
980570 GTTCATAATGAGAAGAACTCATCTGAAGGAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* * * ** *** * * **
980635 ACCTTTTGTTTGACACCATTTCAGAAAGAGATAGAGCAGCAGAGCCATTTCCAGAAAGA
66 A-C--TT-TTTG-CTCGAATTCATCACTCGAT-G-G-ATC--AG-CATTGCCAGGTAGA
* *
980694 GTTCATAATGAGAAGAACTCATCTGAAG-AGGGAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
980757 GACCTTAGTT
Statistics
Matches: 360, Mismatches: 36, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
110 18 0.05
111 80 0.22
112 86 0.24
113 81 0.22
114 1 0.00
116 2 0.01
117 4 0.01
118 11 0.03
119 1 0.00
120 1 0.00
121 2 0.01
123 34 0.09
124 39 0.11
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (113 bp):
GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
ACTTTTTGCTCGAATTCATCACTCGATGGATCAGCATTGCCAGGTAGA
Found at i:980848 original size:17 final size:17
Alignment explanation
Indices: 980826--980888 Score: 56
Period size: 17 Copynumber: 3.4 Consensus size: 17
980816 CAACATTTTC
980826 AGAAGAAGTTCATAATG
1 AGAAGAAGTTCATAATG
*
980843 AGAAGAA-TTCATCTGAAGAGG
1 AGAAGAAGTTCA--T--A-ATG
980864 AAGAAGAAGTTCATAATG
1 -AGAAGAAGTTCATAATG
980882 AGAAGAA
1 AGAAGAA
980889 CTTGTTCAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
16 4 0.11
17 14 0.38
18 3 0.08
19 1 0.03
20 1 0.03
21 3 0.08
22 7 0.19
23 4 0.11
ACGTcount: A:0.49, C:0.06, G:0.25, T:0.19
Consensus pattern (17 bp):
AGAAGAAGTTCATAATG
Found at i:981002 original size:137 final size:139
Alignment explanation
Indices: 980680--981038 Score: 526
Period size: 139 Copynumber: 2.6 Consensus size: 139
980670 GCAGCAGAGC
* *
980680 CATTTCCAGAAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGGAGAAGAAGTTCATAATGAG
1 CATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAG
* * * * * * *
980745 AAGAATTTGTTCGACCTTAGTTTGATTCATCACCTATGGAGCTGAATGAAAGAAGAACCTCACTT
66 AAGAACTTGTTCAACCTTAGCTTAATTCATCACATATGAAGCTGAATGAAACAAGAACCTCACTT
980810 GAGGATCAA
131 GAGGATCAA
* * *
980819 CATTTTCAGAAGAAGTTCATAATGAGAAGAATTCATCTGAAGAGGAAGAAGAAGTTCATAATGAG
1 CATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAG
* * * **
980884 AAGAACTTGTTCAACCTT-GCCTTAATTCATCACATATGAAGTTGAAT-CAACAA-CACCTCTTT
66 AAGAACTTGTTCAACCTTAG-CTTAATTCATCACATATGAAGCTGAATGAAACAAGAACCTCACT
*
980946 TGAGGATCAG
130 TGAGGATCAA
980956 CATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAG
1 CATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAG
981021 AAGAACTTGTTCAACCTT
66 AAGAACTTGTTCAACCTT
981039 TTGCTAGATT
Statistics
Matches: 198, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
137 95 0.48
138 5 0.03
139 98 0.49
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (139 bp):
CATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAG
AAGAACTTGTTCAACCTTAGCTTAATTCATCACATATGAAGCTGAATGAAACAAGAACCTCACTT
GAGGATCAA
Found at i:982904 original size:47 final size:46
Alignment explanation
Indices: 982853--982947 Score: 136
Period size: 47 Copynumber: 2.0 Consensus size: 46
982843 GGTTCTAAGC
* *
982853 GGTCCTTCGGGACAATTCTACGTGGTCCTTCGGGACAATTTCTACGT
1 GGTCCTGCGGGACAATACTACGTGGTCCTTCGGGA-AATTTCTACGT
* * *
982900 GGTCCTGCGGGACAATACTATGTGGTCCTTCGGGATATTTCTATGT
1 GGTCCTGCGGGACAATACTACGTGGTCCTTCGGGAAATTTCTACGT
982946 GG
1 GG
982948 AACTTCGATG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
46 11 0.26
47 32 0.74
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (46 bp):
GGTCCTGCGGGACAATACTACGTGGTCCTTCGGGAAATTTCTACGT
Found at i:982947 original size:23 final size:23
Alignment explanation
Indices: 982853--982934 Score: 128
Period size: 23 Copynumber: 3.5 Consensus size: 23
982843 GGTTCTAAGC
982853 GGTCCTTCGGGACAATTCTACGT
1 GGTCCTTCGGGACAATTCTACGT
982876 GGTCCTTCGGGACAATTTCTACGT
1 GGTCCTTCGGGACAA-TTCTACGT
* * *
982900 GGTCCTGCGGGACAATACTATGT
1 GGTCCTTCGGGACAATTCTACGT
982923 GGTCCTTCGGGA
1 GGTCCTTCGGGA
982935 TATTTCTATG
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
23 32 0.59
24 22 0.41
ACGTcount: A:0.17, C:0.24, G:0.29, T:0.29
Consensus pattern (23 bp):
GGTCCTTCGGGACAATTCTACGT
Found at i:989489 original size:8 final size:8
Alignment explanation
Indices: 989476--989536 Score: 61
Period size: 8 Copynumber: 7.1 Consensus size: 8
989466 CAATCAAAAC
989476 AAAAAGAA
1 AAAAAGAA
989484 AAAAAGAAA
1 AAAAAG-AA
989493 AGAAAAGAA
1 A-AAAAGAA
*
989502 GCAAAAAAAA
1 --AAAAAGAA
989512 AAAGAAGAA
1 AAA-AAGAA
989521 AAAAAG-A
1 AAAAAGAA
989528 AAAAAGAA
1 AAAAAGAA
989536 A
1 A
989537 GAACAAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
7 7 0.16
8 14 0.31
9 12 0.27
10 11 0.24
11 1 0.02
ACGTcount: A:0.84, C:0.02, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:989493 original size:13 final size:13
Alignment explanation
Indices: 989477--989530 Score: 69
Period size: 13 Copynumber: 4.3 Consensus size: 13
989467 AATCAAAACA
989477 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
*
989490 AAAAGAAAAGAAG
1 AAAAGAAAAAAAG
989503 CAAAA-AAAAAAAG
1 -AAAAGAAAAAAAG
989516 --AAGAAAAAAAG
1 AAAAGAAAAAAAG
989527 AAAA
1 AAAA
989531 AAGAAAGAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
10 2 0.06
11 8 0.23
13 21 0.60
14 4 0.11
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:989525 original size:37 final size:37
Alignment explanation
Indices: 989471--989555 Score: 111
Period size: 37 Copynumber: 2.3 Consensus size: 37
989461 AGATTCAATC
* *
989471 AAAACAAA-AAGAAAAAAAGAAAAGA-AAAGAAGCAAA
1 AAAAAAAAGAAGAAAAAAAGAAAAAAGAAAGAA-CAAA
989507 AAAAAAAAGAAGAAAAAAAGAAAAAAGAAAGAACAAA
1 AAAAAAAAGAAGAAAAAAAGAAAAAAGAAAGAACAAA
*
989544 AATCAAAAAGAA
1 AA-AAAAAAGAA
989556 AAAGGGACAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
36 7 0.16
37 22 0.51
38 14 0.33
ACGTcount: A:0.81, C:0.05, G:0.13, T:0.01
Consensus pattern (37 bp):
AAAAAAAAGAAGAAAAAAAGAAAAAAGAAAGAACAAA
Found at i:990199 original size:21 final size:22
Alignment explanation
Indices: 990153--990202 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
990143 CCTCATCAAT
990153 CCTTTGAGCATCAAATACCAAA
1 CCTTTGAGCATCAAATACCAAA
*
990175 CCTTTGAGCATCAAATGCC-AA
1 CCTTTGAGCATCAAATACCAAA
990196 CCTTTGA
1 CCTTTGA
990203 CCAAACACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (22 bp):
CCTTTGAGCATCAAATACCAAA
Found at i:991298 original size:106 final size:106
Alignment explanation
Indices: 991168--991904 Score: 1134
Period size: 106 Copynumber: 7.0 Consensus size: 106
991158 CACTAGATAA
* ** *
991168 AACACAAGTTCAACTTCACAACGAAGGGATGGCTGGTTGTCAACAAATAACTTCTCAATTTCAGA
1 AACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGA
991233 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC
* *
991274 AACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATAACTTCTCAATTTCAGA
1 AACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGA
*
991339 GCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGAC
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC
* *
991380 AACGCAAGTTCAACTTCACGACGAAGGGACCGTTGGTTGTCAACAAACAACTTCTCAATTTCAGA
1 AACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGA
* *
991445 GTCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGAC
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC
* *
991486 AACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGA
1 AACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGA
* *
991551 GCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGAC
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC
* * * * * **
991592 AGCACAAGCTCAACTTCAC-AGCGAAGGGGCGGTTGACTGTCAACAAACAACTTCTCAATTTCAG
1 AACACAAGTTCAACTTCACGA-CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
991656 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC
65 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC
* * * *
991698 AACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAATTTCCCAATTTCAGA
1 AACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGA
*
991763 GCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGAC
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC
* * * * * *
991804 AACACAATTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAACAATTTCTCAGTTCCAGA
1 AACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGA
* * *
991869 ACCAATTTCAACTTCACGACGGAGGATATTGGACTC
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTC
991905 GGAACAGTAC
Statistics
Matches: 579, Mismatches: 50, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
105 1 0.00
106 577 1.00
107 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGA
GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC
Found at i:996705 original size:3 final size:3
Alignment explanation
Indices: 996697--996743 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
996687 AAATATTAAT
996697 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
996744 TTTATAATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Done.