Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008965.1 Hibiscus syriacus cultivar Beakdansim tig00112306_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73592

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1222--1259
6
6.5
6
88
11
53
84
13
2
0
0.73
20969--20993
11
2.3
11
100
0
50
92
8
0
0
0.40
20972--21014
14
3.3
14
87
9
56
81
9
9
0
0.88
20981--21017
15
2.5
15
86
13
58
81
8
10
0
0.89
20969--21036
34
2.1
32
83
5
82
79
10
10
0
0.94
20982--21017
14
2.5
14
95
4
63
80
8
11
0
0.90
29401--29443
20
2.2
20
91
0
68
32
11
20
34
1.89
32311--32364
19
2.8
19
72
10
56
29
20
31
18
1.96
37404--37457
12
4.6
11
84
11
72
70
0
25
3
1.04
37409--37462
20
2.7
20
81
16
67
68
0
25
5
1.11
37410--37457
3
16.7
3
79
16
57
68
0
27
4
1.07
37404--37457
23
2.3
23
87
9
74
70
0
25
3
1.04
39765--39799
16
2.2
16
94
0
61
22
25
11
40
1.88
40477--40526
2
25.0
2
100
0
100
50
0
0
50
1.00
40997--41074
2
40.0
2
94
5
142
48
0
0
51
1.00
40468--42484
500
3.8
532
83
8
2421
37
8
11
42
1.72
41948--41998
7
7.3
7
81
0
57
21
0
31
47
1.51
41933--41998
21
3.1
21
76
4
62
19
1
31
46
1.59
42077--42136
17
3.4
17
80
13
75
40
3
6
50
1.45
42075--42108
9
3.9
9
84
7
52
38
0
5
55
1.24
42461--42490
14
2.1
14
93
0
51
16
0
33
50
1.46
42516--42564
15
3.1
15
86
11
71
42
0
6
51
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42782--43160
8
48.5
8
91
4
596
38
38
9
13
1.77
43038--43105
14
4.9
14
80
10
50
41
41
5
11
1.66
43043--43184
22
7.3
21
75
16
85
43
36
4
14
1.67
43131--43194
4
16.0
4
90
0
101
50
29
0
20
1.49
43413--43457
19
2.3
20
88
3
65
22
33
0
44
1.53
43568--43600
2
16.5
2
100
0
66
48
0
0
51
1.00
43927--43987
18
3.4
18
86
10
90
47
0
4
47
1.23
43937--44011
18
4.5
17
76
20
70
41
1
5
52
1.33
44073--44573
208
2.4
210
84
7
620
27
11
8
52
1.66
44968--45149
59
3.1
58
65
19
151
28
25
17
28
1.98
44994--45182
64
3.1
64
66
21
188
28
26
18
26
1.98
44942--45182
117
2.1
118
95
0
430
29
26
18
25
1.98
57256--57298
14
3.1
14
86
0
68
11
20
46
20
1.82
57293--57362
9
7.3
9
76
12
68
30
25
28
15
1.96
57293--57342
19
2.7
18
81
9
64
28
28
30
14
1.95
57325--57363
21
1.9
21
89
5
62
33
23
25
17
1.96
63613--63662
9
5.3
9
85
7
64
26
30
28
16
1.96
63613--63662
19
2.7
18
84
9
73
26
30
28
16
1.96

Tables:   1

The End!