Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008967.1 Hibiscus syriacus cultivar Beakdansim tig00112309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97660

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
746--781
14
2.6
14
86
13
56
80
8
11
0
0.90
747--781
13
2.6
13
95
4
61
80
8
11
0
0.92
744--789
22
2.2
20
84
7
56
82
8
8
0
0.84
8004--8054
24
2.2
23
85
3
66
7
13
13
64
1.48
9966--10018
16
3.1
16
89
8
70
15
16
0
67
1.23
15998--16040
14
3.1
14
86
3
52
27
39
0
32
1.57
16490--16529
19
2.0
20
95
4
73
22
15
0
62
1.32
24212--24257
18
2.4
18
80
20
58
8
10
4
76
1.15
27205--27290
43
2.0
44
97
2
165
34
20
27
16
1.94
34551--34596
20
2.3
20
92
3
76
47
6
10
34
1.64
36876--36912
10
3.8
10
89
3
58
86
0
13
0
0.57
36860--36912
20
2.6
21
87
3
72
81
1
15
1
0.87
38686--39201
258
2.0
257
99
0
1016
34
18
18
29
1.94
41585--41631
23
2.0
23
83
0
58
78
2
17
2
0.94
44923--44952
10
3.0
10
100
0
60
90
0
10
0
0.47
44915--44954
16
2.3
18
87
8
57
85
0
15
0
0.61
61479--61534
19
2.9
19
82
15
71
0
17
1
80
0.80
61488--61534
15
3.3
14
85
11
60
0
17
2
80
0.80
66063--66118
19
2.9
19
82
15
71
0
17
1
80
0.80
66072--66118
15
3.3
14
85
11
60
0
17
2
80
0.80
69023--69063
16
2.5
17
81
18
52
68
2
9
19
1.29
69277--69332
18
3.1
19
76
19
57
0
16
5
78
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76474--76525
21
2.6
21
90
6
81
34
13
5
46
1.67
87042--87082
20
2.0
20
95
0
73
41
4
34
19
1.73
92549--92670
11
10.2
11
71
24
79
28
4
36
31
1.76
92534--92673
36
3.9
36
96
1
257
28
5
36
30
1.78
92556--92670
23
4.8
24
71
24
82
27
4
37
30
1.76
97004--97141
36
3.9
36
93
3
230
28
5
35
30
1.81
97024--97121
13
8.2
12
72
22
57
27
5
35
31
1.79
97039--97129
13
7.5
12
70
25
59
28
4
36
30
1.77

Tables:   1

The End!