genome.fa.s8968.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008968.1 Hibiscus syriacus cultivar Beakdansim tig00112310_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112859

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4106--4162	19	2.9	19	82	10	71	0	17	1	80	0.79
4112--4162	15	3.5	15	82	15	54	0	17	1	80	0.81
4109--4143	13	2.8	12	91	8	61	0	17	0	82	0.66
4106--4163	20	3.0	18	78	14	62	0	17	1	81	0.78
8685--8740	19	2.9	19	82	15	71	0	17	1	80	0.80
8694--8740	15	3.3	14	85	11	60	0	17	2	80	0.80
11639--11679	16	2.5	17	81	18	52	68	2	9	19	1.29
11893--11948	18	3.1	19	76	19	57	0	16	5	78	0.92
18133--18192	30	2.0	31	83	3	77	26	8	10	55	1.61
19102--19153	21	2.6	21	90	6	81	34	13	5	46	1.67
29719--29759	20	2.0	20	95	0	73	41	4	34	19	1.73
35259--35380	11	10.2	11	71	24	79	28	4	36	31	1.76
35242--35383	36	3.9	36	97	0	266	28	4	35	30	1.78
35266--35380	23	4.8	24	71	24	82	27	4	37	30	1.76
39779--39900	11	10.2	11	71	24	79	28	4	36	31	1.76
39762--39903	36	3.9	36	97	0	266	28	4	35	30	1.78
39786--39900	23	4.8	24	71	24	82	27	4	37	30	1.76
44346--44371	13	2.0	13	100	0	52	30	30	0	38	1.58
46795--46824	5	6.2	5	96	3	53	0	20	0	80	0.72
46814--46878	27	2.4	28	80	12	80	10	16	10	61	1.56
48633--48671	13	2.9	14	80	7	53	20	12	0	66	1.24
48643--48682	19	2.0	20	90	4	64	22	12	0	65	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48635--48685	19	2.7	19	80	14	61	21	13	0	64	1.28
48946--48993	19	2.6	18	87	9	62	72	6	18	2	1.15
51777--51816	19	2.1	19	85	4	53	20	17	0	62	1.33
52818--52851	17	2.0	17	100	0	68	35	0	29	35	1.58
53127--53167	6	6.7	6	83	5	55	0	17	2	80	0.82
53127--53167	19	2.2	18	86	4	55	0	17	2	80	0.82
53591--53626	13	2.8	13	95	0	63	33	0	41	25	1.55
53555--53662	48	2.2	49	85	1	137	32	2	37	26	1.71
53601--53669	36	1.9	36	96	0	129	30	1	40	27	1.65
57976--58014	20	1.9	21	84	5	53	33	0	38	28	1.57
62177--62202	8	3.2	8	100	0	52	0	23	0	76	0.78
68032--68064	17	1.9	17	93	0	57	75	0	24	0	0.80
68029--68064	11	3.2	12	88	11	58	77	0	22	0	0.76
74331--74373	20	2.2	20	91	4	70	48	4	11	34	1.60
78197--78487	54	5.5	54	82	8	213	37	18	13	30	1.90
78251--78487	55	4.6	49	83	11	223	38	18	12	30	1.88
78337--78494	55	2.9	54	93	1	271	39	17	10	31	1.84
82511--82568	26	2.2	26	90	0	89	39	0	34	25	1.56
82524--82574	26	2.0	26	92	0	84	37	0	37	25	1.56
82843--82882	10	3.8	10	93	6	62	0	15	0	85	0.61
82845--82874	15	2.1	14	93	6	51	0	10	0	90	0.47
82843--82882	11	3.6	12	86	10	50	0	15	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82844--82891	21	2.2	21	85	10	62	0	14	4	81	0.84
94047--94136	26	3.5	26	95	0	153	40	0	34	25	1.56
94068--94136	15	5.1	15	64	25	55	40	0	34	24	1.56
94150--94190	15	2.6	17	75	25	54	70	0	17	12	1.16
110636--110705	28	2.5	28	75	9	79	75	1	18	4	1.04
110639--110702	21	3.2	21	81	14	82	75	1	20	3	1.03
110636--110704	14	4.9	14	74	18	63	76	1	18	2	0.98

Tables:   1

The End!