genome.fa.s897.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000897.1 Hibiscus syriacus cultivar Beakdansim tig00001760_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126768

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316--373	27	2.3	26	85	14	77	43	0	0	56	0.99
315--402	34	2.6	34	94	1	149	42	0	0	57	0.98
404--432	12	2.4	12	100	0	58	0	6	51	41	1.28
401--436	18	2.0	18	94	0	63	0	8	50	41	1.33
3932--3961	2	15.0	2	100	0	60	50	0	0	50	1.00
8404--8448	20	2.2	20	84	7	56	31	13	11	44	1.78
8437--8487	26	2.0	26	88	0	75	35	21	5	37	1.78
9097--9121	6	4.2	6	100	0	50	0	48	0	52	1.00
11746--11991	41	5.9	41	67	16	123	32	17	21	29	1.96
11753--12094	83	4.1	82	79	5	289	31	16	21	30	1.95
11751--11940	41	4.6	41	72	13	149	30	15	22	31	1.95
19734--19873	58	2.4	57	77	7	138	35	16	17	30	1.92
19744--19858	59	2.0	58	82	1	140	35	17	15	31	1.91
20925--20971	24	2.0	24	91	0	76	31	2	2	63	1.18
20932--20981	24	2.1	24	81	7	57	34	6	2	58	1.34
21375--21433	21	2.7	22	73	5	66	22	23	20	33	1.97
21418--21631	20	10.9	20	77	8	152	32	25	20	21	1.97
21600--21642	19	2.3	18	88	11	61	44	25	18	11	1.84
22216--22329	20	5.7	20	82	0	138	25	21	25	28	1.99
22218--22353	60	2.3	62	79	10	156	24	21	24	30	1.99
22214--22404	20	9.4	20	75	7	125	29	20	23	26	1.99
22659--22777	59	2.0	59	83	8	152	31	20	5	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22660--22837	60	3.0	60	79	9	168	30	21	6	41	1.77
22958--23074	60	2.0	60	81	10	141	38	4	23	33	1.75
27263--27288	2	13.0	2	100	0	52	50	0	0	50	1.00
27614--27660	20	2.3	20	79	17	53	61	8	4	25	1.43
28350--28509	65	2.4	66	82	12	186	37	9	14	38	1.78
28467--28743	94	3.0	93	91	2	421	35	9	16	38	1.80
30679--30716	6	6.3	6	100	0	76	63	0	0	36	0.95
36531--36608	10	7.2	10	72	16	57	16	7	12	62	1.52
36524--36608	23	3.9	22	75	14	86	15	7	14	63	1.50
36525--36665	33	4.3	33	78	7	137	12	9	17	60	1.58
36525--36665	20	6.6	20	76	13	75	12	9	17	60	1.58
36607--36663	10	5.7	10	78	0	69	5	14	22	57	1.56
36606--36663	30	1.9	30	85	0	80	6	13	22	56	1.61
36720--36750	16	1.9	16	100	0	62	6	12	22	58	1.58
37286--37397	59	1.9	59	87	3	163	31	17	7	43	1.76
37588--37747	60	2.7	59	78	6	169	43	6	17	32	1.76
44012--44218	42	5.0	42	80	4	215	27	17	27	28	1.98
44012--44219	84	2.5	82	79	9	242	26	17	26	28	1.98
44318--44365	21	2.3	21	88	0	69	20	47	16	14	1.82
48602--48653	20	2.5	21	71	6	52	65	5	7	21	1.40
48602--48653	21	2.5	22	71	9	54	65	5	7	21	1.40
50812--50974	65	2.5	65	86	3	231	26	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50814--51023	65	3.2	64	83	8	223	26	17	26	30	1.97
51191--51230	20	2.0	21	85	14	57	45	7	5	42	1.54
56386--56425	21	1.9	21	85	10	55	35	10	2	52	1.48
58355--58532	64	2.8	65	85	2	234	26	17	26	29	1.97
58372--58581	65	3.2	64	83	8	223	26	17	26	30	1.97
58749--58788	20	2.0	21	85	14	57	45	7	5	42	1.54
58926--59110	98	1.9	98	93	0	316	16	23	26	32	1.96
59178--59505	109	3.0	109	92	0	541	21	19	26	32	1.97
60194--60314	63	1.9	63	83	8	156	12	18	14	55	1.69
70930--70982	21	2.5	22	71	3	54	66	5	7	20	1.38
73820--73902	41	2.0	41	97	0	157	14	18	20	46	1.83
76987--77031	21	2.1	21	87	0	63	31	28	24	15	1.96
77605--77639	18	1.9	18	88	11	54	54	5	17	22	1.64
77696--77739	22	2.0	22	86	4	63	45	0	22	31	1.53
78610--78912	149	2.0	149	96	0	563	28	17	19	34	1.94
82054--82098	21	2.1	21	87	0	63	31	28	24	15	1.96
82677--82711	18	1.9	18	88	11	54	54	5	17	22	1.64
82768--82811	22	2.0	22	86	4	63	45	0	22	31	1.53
83691--83994	149	2.0	149	96	0	572	28	17	19	34	1.94
83973--84017	23	2.0	23	82	8	56	20	22	28	28	1.98
87151--87195	21	2.1	21	87	0	63	31	28	24	15	1.96
87773--87807	18	1.9	18	88	11	54	54	5	17	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87864--87907	22	2.0	22	86	4	63	45	0	22	31	1.53
88783--89086	149	2.0	149	96	0	572	28	17	19	34	1.94
89065--89109	23	2.0	23	82	8	56	20	22	28	28	1.98
92243--92287	21	2.1	21	87	0	63	31	28	24	15	1.96
92866--92900	18	1.9	18	88	11	54	54	5	17	22	1.64
92957--93000	22	2.0	22	86	4	63	45	0	22	31	1.53
93878--94181	149	2.0	149	98	0	590	28	17	19	34	1.95
94160--94204	23	2.0	23	81	0	54	20	26	26	26	1.99
95244--95307	19	3.2	20	72	14	53	43	1	1	53	1.19
95253--95302	20	2.5	20	78	12	59	40	2	2	56	1.22
95220--95306	31	2.8	30	79	10	95	41	1	3	54	1.25
95825--95911	31	2.8	30	81	10	95	55	2	1	41	1.20
95820--95893	20	3.8	20	74	15	57	55	1	2	40	1.22
103974--104013	21	1.9	21	90	10	64	22	0	0	77	0.77
103990--104032	13	3.1	14	83	6	52	23	4	0	72	1.04
104043--104073	2	15.5	2	100	0	62	48	0	0	51	1.00
104254--104310	26	2.2	26	81	12	73	19	1	1	77	0.95
104254--104323	10	6.6	10	80	14	70	21	1	1	75	0.96
104258--104323	16	4.3	15	79	14	64	21	1	1	75	0.96
104358--104429	30	2.3	32	83	11	87	12	11	1	75	1.12
104371--104440	30	2.2	32	82	12	81	12	12	1	72	1.18
105174--105265	23	4.0	23	91	0	139	26	25	27	21	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105899--106004	56	1.9	55	86	1	149	22	16	23	36	1.94
110135--110203	23	3.0	23	80	0	84	28	26	24	20	1.99
117718--117786	23	3.0	23	80	0	84	28	23	24	23	1.99
120946--120981	2	18.5	2	94	5	65	50	0	0	50	1.00
123682--123732	25	2.0	25	96	0	93	54	3	13	27	1.56

Tables:   1

The End!