Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008976.1 Hibiscus syriacus cultivar Beakdansim tig00112325_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52578

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1367--1414
19
2.5
19
96
0
87
31
6
10
52
1.60
4136--4853
200
3.6
199
84
4
840
39
14
14
31
1.86
4861--4908
23
2.1
23
92
0
78
35
16
10
37
1.83
4861--5022
87
1.9
87
85
2
227
35
11
6
45
1.67
5715--5747
15
2.2
15
94
0
57
72
0
0
27
0.85
5921--5976
20
2.8
20
86
2
78
41
7
23
28
1.80
6340--6566
21
11.0
21
71
14
134
23
19
23
33
1.97
6408--6538
61
2.1
62
90
2
201
23
18
23
34
1.96
6459--6563
42
2.5
42
95
0
183
22
20
21
35
1.96
6408--6567
61
2.6
59
83
9
146
25
18
21
34
1.96
6442--6567
19
6.2
19
74
17
119
25
19
21
33
1.97
6655--6681
6
4.5
6
100
0
54
33
51
14
0
1.43
7436--7756
42
7.8
41
83
8
277
36
24
18
20
1.95
7470--7664
61
3.2
61
85
5
234
35
24
18
21
1.96
7444--7706
103
2.5
103
93
1
445
36
24
19
20
1.95
7442--7712
21
13.0
21
72
16
199
36
23
18
20
1.95
7752--7804
21
2.5
21
90
0
79
18
20
30
30
1.97
9111--9165
23
2.3
25
78
12
62
60
1
3
34
1.25
12224--12294
37
1.9
37
97
0
133
19
26
21
32
1.97
13605--13783
90
2.0
91
84
7
240
43
12
15
29
1.82
25023--25302
85
3.2
82
70
16
215
30
6
5
57
1.45
24951--25299
172
2.0
173
91
5
569
30
6
5
57
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25285--25317
10
3.5
10
84
16
52
45
0
6
48
1.27
26463--26496
10
3.4
10
87
0
50
20
5
0
73
1.04
29139--29216
39
2.0
39
82
5
95
29
28
25
16
1.97
36748--37402
105
6.4
105
92
4
1045
32
25
18
23
1.97
36779--37359
306
1.9
304
94
1
1038
32
25
18
23
1.97
36748--37402
201
3.2
205
90
5
990
32
25
18
23
1.97
39044--39299
83
3.1
85
68
15
237
30
7
4
57
1.46
39015--39349
169
2.0
167
88
9
495
30
6
5
57
1.47
39086--39350
85
3.2
85
69
17
241
30
6
5
57
1.46
39335--39367
10
3.5
10
84
16
52
45
0
6
48
1.27
41790--41945
60
2.6
59
85
6
199
37
3
24
35
1.72
42492--42634
60
2.4
61
84
3
182
27
16
17
37
1.92
42851--42889
18
2.2
18
90
0
60
30
20
17
30
1.96
42984--43055
3
23.7
3
94
2
126
65
0
1
33
1.02
46344--46382
17
2.4
17
91
4
62
30
2
5
61
1.31
48558--48605
13
3.6
14
80
8
55
18
2
10
68
1.28
48629--48692
32
2.0
33
84
9
87
21
1
15
60
1.43

Tables:   1

The End!