Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008977.1 Hibiscus syriacus cultivar Beakdansim tig00112334_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 220012
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 1 of 2
Found at i:4304 original size:8 final size:8
Alignment explanation
Indices: 4291--4318 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
4281 AGATTCTCCC
4291 ATATGTAT
1 ATATGTAT
4299 ATATGTAT
1 ATATGTAT
4307 ATATGTAT
1 ATATGTAT
4315 ATAT
1 ATAT
4319 ATCTTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (8 bp):
ATATGTAT
Found at i:7850 original size:10 final size:10
Alignment explanation
Indices: 7837--7868 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
7827 AGTGAAAATG
7837 AAAAAAGAAA
1 AAAAAAGAAA
7847 AAAAAAGAAA
1 AAAAAAGAAA
*
7857 AAAAATGAAA
1 AAAAAAGAAA
7867 AA
1 AA
7869 TGAAAAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:7887 original size:34 final size:36
Alignment explanation
Indices: 7803--7890 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 36
7793 ATTTTGCTTG
*
7803 AAGAAAAAAGAAGAAGAAAAAATGAGTGAAAATGAAAA
1 AAGAAAAAAAAAGAAGAAAAAATGA--GAAAATGAAAA
7841 AAGAAAAAAAAAGAA-AAAAAATGA-AAAATGAAAA
1 AAGAAAAAAAAAGAAGAAAAAATGAGAAAATGAAAA
*
7875 AATG-GAAAAAAAGAAG
1 AA-GAAAAAAAAAGAAG
7891 GGTTCAAGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
34 22 0.48
35 1 0.02
37 9 0.20
38 14 0.30
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (36 bp):
AAGAAAAAAAAAGAAGAAAAAATGAGAAAATGAAAA
Found at i:8902 original size:53 final size:53
Alignment explanation
Indices: 8816--9446 Score: 857
Period size: 53 Copynumber: 11.7 Consensus size: 53
8806 CAACAATTAT
* * * *
8816 TGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGA
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
*
8871 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCATACGCAATTGA
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * * *
8924 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACAATCGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * * * *
8977 TGAAGATTGTTCGAGTCTCATATTCTCTGAAGAAATAGGGAGCAAACGCAATTGA
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
9032 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * * *
9085 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACAATCGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * * *
9138 TGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGA
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
9193 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * * *
9246 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACAATCGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * *
9299 TGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * * *
9354 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* *
9407 TGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGG
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGG
9447 AGCATACACG
Statistics
Matches: 511, Mismatches: 57, Indels: 16
0.88 0.10 0.03
Matches are distributed among these distances:
53 336 0.66
54 8 0.02
55 167 0.33
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (53 bp):
TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
Found at i:9081 original size:161 final size:161
Alignment explanation
Indices: 8815--9476 Score: 1110
Period size: 161 Copynumber: 4.1 Consensus size: 161
8805 CCAACAATTA
8815 TTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTG
1 TTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTG
*
8880 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCATACGCAATTGATGAAGATTGTGGGTCTTATAC
66 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGATGAAGATTGTGGGTCTTATAC
8945 TCTCTGAAGATATAGGGGGCAGACACAATCG
131 TCTCTGAAGATATAGGGGGCAGACACAATCG
*
8976 TTGAAGATTGTTCGAGTCTCATATTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTG
1 TTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTG
9041 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGATGAAGATTGTGGGTCTTATAC
66 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGATGAAGATTGTGGGTCTTATAC
9106 TCTCTGAAGATATAGGGGGCAGACACAATCG
131 TCTCTGAAGATATAGGGGGCAGACACAATCG
* *
9137 TTGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTG
1 TTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTG
9202 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGATGAAGATTGTGGGTCTTATAC
66 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGATGAAGATTGTGGGTCTTATAC
9267 TCTCTGAAGATATAGGGGGCAGACACAATCG
131 TCTCTGAAGATATAGGGGGCAGACACAATCG
* * * * *
9298 TTGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTG
1 TTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTG
* * * * * *
9363 TGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTCAT
66 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGATGAAGATTG-T-GGGTCTTAT
* * * * *
9428 ACTCTCTGAAGAAATAGGGAGCATACACGATTG
129 ACTCTCTGAAGATATAGGGGGCAGACACAATCG
*
9461 TTGAAGA-TATTCGAGT
1 TTGAAGATTGTTCGAGT
9477 TCTATTCTCC
Statistics
Matches: 478, Mismatches: 21, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
161 428 0.90
162 8 0.02
163 42 0.09
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (161 bp):
TTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTG
TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGATGAAGATTGTGGGTCTTATAC
TCTCTGAAGATATAGGGGGCAGACACAATCG
Found at i:9468 original size:108 final size:106
Alignment explanation
Indices: 8816--9446 Score: 857
Period size: 108 Copynumber: 5.9 Consensus size: 106
8806 CAACAATTAT
* * * *
8816 TGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTGT
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACAATTGATGAAGATTGT
* *
8881 GGGTCTTATACTCTCTGAAGAAATAGGGGGCATACGCAATTGA
64 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * * *
8924 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACAATCGTTGAAGATTGTTC
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACAATTGATGAAGATTG-T-
* * * *
8989 GAGTCTCATATTCTCTGAAGAAATAGGGAGCAAACGCAATTGA
64 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * *
9032 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGATGAAGATTGTGG
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACAATTGATGAAGATTGTGA
* * * *
9097 GTCTTATACTCTCTGAAGATATAGGGGGCAGACACAATCGT
66 GTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * * *
9138 TGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAAACGCAATTGATGAAGATTGT
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACAATTGATGAAGATTGT
*
9203 GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
64 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* * * * *
9246 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACAATCGTTGAAGATCGTTC
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACAATTGATGAAGATTG-T-
*
9311 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
64 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
* *
9354 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACAATTGATGAAGATTG-T-
*
9419 GAGTCTCATACTCTCTGAAGAAATAGGG
64 GAGTCTTATACTCTCTGAAGAAATAGGG
9447 AGCATACACG
Statistics
Matches: 466, Mismatches: 51, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
106 130 0.28
107 6 0.01
108 330 0.71
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (106 bp):
TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACAATTGATGAAGATTGTGA
GTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATTGA
Found at i:15599 original size:47 final size:48
Alignment explanation
Indices: 15547--15654 Score: 139
Period size: 47 Copynumber: 2.3 Consensus size: 48
15537 GTGTTAACAT
* ** *
15547 AAACATTATTTTTTTTTACCGAAAATGTT-GTTATTGGGCGCTACCTA
1 AAACATTATTTTTTTTTACCGAAAATGTTAATTATTAAGCACTACCTA
*
15594 AAACATTA-TTTTTTTTACCGAAAATTTTAATTATTAAGCACTACCTA
1 AAACATTATTTTTTTTTACCGAAAATGTTAATTATTAAGCACTACCTA
**
15641 AAATGTTATTTTTT
1 AAACATTATTTTTT
15655 CTATCGGAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
46 19 0.37
47 28 0.54
48 5 0.10
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.45
Consensus pattern (48 bp):
AAACATTATTTTTTTTTACCGAAAATGTTAATTATTAAGCACTACCTA
Found at i:17203 original size:26 final size:29
Alignment explanation
Indices: 17173--17234 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
17163 TTAATATTCA
*
17173 AATTTAAAAGA-T-AATAAATAT-ACTTT
1 AATTTAAAAGATTAAAAAAATATGACTTT
* *
17199 AATTTAAAATATTAAAAAAATATGATTTT
1 AATTTAAAAGATTAAAAAAATATGACTTT
17228 AATTTAA
1 AATTTAA
17235 TTATTAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 10 0.33
27 1 0.03
28 8 0.27
29 11 0.37
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (29 bp):
AATTTAAAAGATTAAAAAAATATGACTTT
Found at i:17239 original size:28 final size:28
Alignment explanation
Indices: 17188--17242 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
17178 AAAAGATAAT
17188 AAATATACTTTAATTTAAAATATTAAAA
1 AAATATACTTTAATTTAAAATATTAAAA
* *
17216 AAATATGATTTTAATTT-AATTATTAAA
1 AAATAT-ACTTTAATTTAAAATATTAAA
17243 TTTATCAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (28 bp):
AAATATACTTTAATTTAAAATATTAAAA
Found at i:17475 original size:17 final size:15
Alignment explanation
Indices: 17439--17477 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
17429 GGTGTGCAAA
*
17439 TCCGGGTACCCGATT
1 TCCGGGTACCCGACT
17454 TCCGGGTACCCAGAACT
1 TCCGGGTACCC-G-ACT
17471 TCCGGGT
1 TCCGGGT
17478 CGACAATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.52
16 1 0.05
17 9 0.43
ACGTcount: A:0.15, C:0.33, G:0.28, T:0.23
Consensus pattern (15 bp):
TCCGGGTACCCGACT
Found at i:18172 original size:4 final size:4
Alignment explanation
Indices: 18163--18256 Score: 50
Period size: 4 Copynumber: 22.8 Consensus size: 4
18153 AAAGAAAAGA
*
18163 AAAT AAAT AAAAT AAAT AAAT AAAT -AAT -AAT AACA- AAGT ACGAAT
1 AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT A--AAT
* * * * * *
18208 AATAT ATAT ATAT ATAT ATAT ATAAT AAAT AAAA AAAT AAAT ATAT AAA
1 AA-AT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT AAA
18257 AATTAATAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
3 6 0.08
4 54 0.73
5 11 0.15
6 3 0.04
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (4 bp):
AAAT
Found at i:18176 original size:9 final size:9
Alignment explanation
Indices: 18162--18195 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
18152 AAAAGAAAAG
18162 AAAATAAAT
1 AAAATAAAT
18171 AAAATAAAT
1 AAAATAAAT
18180 -AAATAAAT
1 AAAATAAAT
18188 AATAATAA
1 AA-AATAA
18196 CAAAGTACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.35
9 10 0.43
10 5 0.22
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAATAAAT
Found at i:18336 original size:2 final size:2
Alignment explanation
Indices: 18329--18353 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
18319 GATAATTACA
18329 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
18354 GTAACAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18516 original size:2 final size:2
Alignment explanation
Indices: 18509--18535 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18499 CTTGTGTAGA
18509 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
18536 ATAATAGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18600 original size:32 final size:34
Alignment explanation
Indices: 18564--18626 Score: 87
Period size: 32 Copynumber: 1.9 Consensus size: 34
18554 TATAACAACA
18564 ATAAT-ATCAATAAAAA-A-AGAAAATAAATATAT
1 ATAATGAT-AATAAAAATATAGAAAATAAATATAT
*
18596 ATAATGATAATAAAAATATAGAAAATTAATA
1 ATAATGATAATAAAAATATAGAAAATAAATA
18627 GAAAAATATG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
32 13 0.48
33 3 0.11
34 11 0.41
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.27
Consensus pattern (34 bp):
ATAATGATAATAAAAATATAGAAAATAAATATAT
Found at i:19711 original size:19 final size:20
Alignment explanation
Indices: 19675--19712 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
19665 ACCTTACTAA
*
19675 CTCTTTTCATTTTTTTTCCT
1 CTCTTTTCATTTTATTTCCT
19695 CTCTTTT-ATTTTATTTCC
1 CTCTTTTCATTTTATTTCC
19713 ATCATCTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (20 bp):
CTCTTTTCATTTTATTTCCT
Found at i:23149 original size:17 final size:18
Alignment explanation
Indices: 23124--23157 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23114 AAAGGGCATA
*
23124 AAAAGAAAAGAAGAAAAT
1 AAAAGAAAAGAACAAAAT
23142 AAAA-AAAAGAACAAAA
1 AAAAGAAAAGAACAAAA
23158 ATCAAAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (18 bp):
AAAAGAAAAGAACAAAAT
Found at i:23158 original size:18 final size:18
Alignment explanation
Indices: 23124--23165 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
23114 AAAGGGCATA
*
23124 AAAAGAAAAGAAGAAAAT-
1 AAAA-AAAAGAAAAAAATC
23142 AAAAAAAAGAACAAAAATC
1 AAAAAAAAGAA-AAAAATC
23161 AAAAA
1 AAAAA
23166 GAAAAAGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 7 0.33
18 9 0.43
19 5 0.24
ACGTcount: A:0.81, C:0.05, G:0.10, T:0.05
Consensus pattern (18 bp):
AAAAAAAAGAAAAAAATC
Found at i:23790 original size:22 final size:22
Alignment explanation
Indices: 23764--23818 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
23754 GCTACCCCAT
*
23764 CAAACCTTT-AAGCATCAAATGC
1 CAAACCTTTGAA-CATAAAATGC
23786 CAAACCTTTGAACATAAAATGC
1 CAAACCTTTGAACATAAAATGC
23808 CAAACCTTTGA
1 CAAACCTTTGA
23819 CCAAACACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.42, C:0.25, G:0.09, T:0.24
Consensus pattern (22 bp):
CAAACCTTTGAACATAAAATGC
Found at i:24892 original size:106 final size:105
Alignment explanation
Indices: 24765--25212 Score: 666
Period size: 106 Copynumber: 4.2 Consensus size: 105
24755 ATATCGTGCC
* * * *
24765 ACTCGAGACAACACAAGTTCAACTTCACAATGAAGGGACGACTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACG-CTGGTTGTCAACAAACAACTTCCC
* *
24830 AATTTCAGAACTAATTTCAACTTCACATCGAAGGATATTGG
65 AATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTGG
*
24871 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA-CGCTGGTTGTCAACAAACAACTTCCC
24936 AATTTCAGAGCCAATTTCAACTTCACGA-CGAAGGATATTGG
65 AATTTCAGAGCCAATTTCAACTTCAC-ATCGAAGGATATTGG
* * *
24977 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGAC-GCTGGTTGTCAACAAACAACTTCCC
* *
25042 AATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGG
65 AATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTGG
* * * *
25083 ACTCAAGACAACGCAAGTTCAACTTCATGACGAAGGGACCACTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA-CGCTGGTTGTCAACAAACAACTTCCC
*
25148 AATTTCAGAGCCAATTTCAACTTCAAAGT-GAAGGATATTGG
65 AATTTCAGAGCCAATTTCAACTTCACA-TCGAAGGATATTGG
*
25189 ACTCTAGACAACGCAAGTTCAACT
1 ACTCCAGACAACGCAAGTTCAACT
25213 GGTTGTCAAC
Statistics
Matches: 315, Mismatches: 21, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
105 2 0.01
106 309 0.98
107 4 0.01
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (105 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACGCTGGTTGTCAACAAACAACTTCCCA
ATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTGG
Found at i:25104 original size:212 final size:212
Alignment explanation
Indices: 24765--26028 Score: 1827
Period size: 212 Copynumber: 6.1 Consensus size: 212
24755 ATATCGTGCC
* * *
24765 ACTCGAGACAACACAAGTTCAACTTCACAATGAAGGGA-CGACTGGTTGTCAACAAACAACTTCC
1 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAACAAACAACTTCC
* * *
24829 CAATTTCAGAACTAATTTCAACTTCACATCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
65 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
24894 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
130 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
24959 CAC-GACGAAGGATATTGG
195 CACAG-CGAAGGATATTGG
* * * * *
24977 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAATAAACAATTTCCC
1 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * *
25042 AATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
* * *
25107 TCATGACGAAGGGACCACTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTC
131 TCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTC
* *
25172 AAAGTGAAGGATATTGG
196 ACAGCGAAGGATATTGG
* *
25189 ACTCTAGACAACGCAAG------TT-----C--A---A---CTGGTTGTCAACAAACAACTTCTC
1 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
25235 AAATTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
25300 TCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTC
131 TCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTC
25365 ACAGCGAAGGATATTGG
196 ACAGCGAAGGATATTGG
* *
25382 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * *
25447 AATTTCGGAGCCAATTTCAACTTCACAGCGAAAGATATTGTACTCCAGACAACGCAAGTTCAACT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
* * * *
25512 TCACAATGAAGGGACCACTGGTTGTCAACAAACAATTTCCCAATTTC-GAAGCCAATTTCAACTT
131 TCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG-AGCCAATTTCAACTT
25576 CACAGCGAAGGATATTGG
195 CACAGCGAAGGATATTGG
* * * *
25594 ACTCCAGACAACGCAAGTTTAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
25659 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
25724 TCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTC
131 TCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTC
25789 ACAGCGAAGGATATTGG
196 ACAGCGAAGGATATTGG
* * *
25806 ACTCGAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTTTCAACAAACAATTTCCC
1 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * *
25871 AATTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGACAACACAAGTTCAACT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
* * * * ** * *
25936 TCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCTGATTCCAGAGCCAATTGCAACTTC
131 TCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTC
*
26001 AC-GACGGAGGATATTGG
196 ACAG-CGAAGGATATTGG
*
26018 ACTCGAAACAA
1 ACTCGAGACAA
26029 TGCTATTTAC
Statistics
Matches: 944, Mismatches: 84, Indels: 48
0.88 0.08 0.04
Matches are distributed among these distances:
193 174 0.18
196 1 0.00
199 3 0.00
201 1 0.00
204 1 0.00
206 3 0.00
209 1 0.00
211 2 0.00
212 755 0.80
213 3 0.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (212 bp):
ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
TCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTC
ACAGCGAAGGATATTGG
Found at i:25269 original size:87 final size:87
Alignment explanation
Indices: 25123--25299 Score: 284
Period size: 87 Copynumber: 2.0 Consensus size: 87
25113 CGAAGGGACC
* * **
25123 ACTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCAAAGTGAAGGATATTG
1 ACTGGTTGTCAACAAACAACTTCCCAAATTCAGAGCCAATTTCAACTTCAAAGCAAAGGATATTG
*
25188 GACTCTAGACAACGCAAGTTCA
66 GACTCCAGACAACGCAAGTTCA
*
25210 ACTGGTTGTCAACAAACAACTTCTCAAATTCAGAGCCAATTTCAACTTCACAA-CAAAGGATATT
1 ACTGGTTGTCAACAAACAACTTCCCAAATTCAGAGCCAATTTCAACTTCA-AAGCAAAGGATATT
25274 GGACTCCAGACAACGCAAGTTCA
65 GGACTCCAGACAACGCAAGTTCA
25297 ACT
1 ACT
25300 TCACGACGAA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
87 81 0.98
88 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.25
Consensus pattern (87 bp):
ACTGGTTGTCAACAAACAACTTCCCAAATTCAGAGCCAATTTCAACTTCAAAGCAAAGGATATTG
GACTCCAGACAACGCAAGTTCA
Found at i:26023 original size:106 final size:106
Alignment explanation
Indices: 25211--26021 Score: 1257
Period size: 106 Copynumber: 7.7 Consensus size: 106
25201 GCAAGTTCAA
* * * *
25211 CTGGTTGTCAACAAACAACTTCTCAAATTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGG
1 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
25276 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
66 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
25317 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
1 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
25382 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCA
66 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
* * * *
25423 CTGGTTGTCAACAAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAAGATATTGT
1 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
25488 ACTCCAGACAACGCAAGTTCAACTTCACAATGAAGGGACCA
66 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
*
25529 CTGGTTGTCAACAAACAATTTCCCAATTTC-GAAGCCAATTTCAACTTCACAGCGAAGGATATTG
1 CTGGTTGTCAACAAACAACTTCCCAATTTCAG-AGCCAATTTCAACTTCACAGCGAAGGATATTG
* *
25593 GACTCCAGACAACGCAAGTTTAACTTCACAACGAAGGGACCG
65 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
* *
25635 CTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
1 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
25700 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCG
66 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
25741 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
1 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
25806 ACTCGAGACAACGCAAGTTCAACTTCACGATGAAGGGACCG
66 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
* * * * *
25847 CTGGTTTTCAACAAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTGG
1 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
25912 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGG
66 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
* * ** * * *
25953 CTGGTTGTCAACAAATAATTTCCTGATTCCAGAGCCAATTGCAACTTCAC-GACGGAGGATATTG
1 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTG
26017 GACTC
65 GACTC
26022 GAAACAATGC
Statistics
Matches: 654, Mismatches: 48, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
105 1 0.00
106 652 1.00
107 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
Found at i:26861 original size:37 final size:37
Alignment explanation
Indices: 26771--26867 Score: 131
Period size: 37 Copynumber: 2.6 Consensus size: 37
26761 CATTTTCATC
26771 CTACTAGGATTCAAACTCCTAAAAATATGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATATGATAAAATT
* * * *
26808 TTGCTAGGATTCAAACTCCTAAAAATATGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATATGATAAAATT
** *
26845 CTACTATTATTTAAACTCCTAAA
1 CTACTAGGATTCAAACTCCTAAA
26868 GATAGGATCC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.33
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATATGATAAAATT
Found at i:27395 original size:23 final size:24
Alignment explanation
Indices: 27351--27420 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 24
27341 TTTCTTTGCG
* *
27351 TTATAT-TATATTATTTTCTTATTA
1 TTATATATATA-TATATACTTATTA
27375 TTATATATATATATATA-TTATTA
1 TTATATATATATATATACTTATTA
* * *
27398 TTTTTTATATATATGTACTTATT
1 TTATATATATATATATACTTATT
27421 TACTATGTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
23 20 0.51
24 15 0.38
25 4 0.10
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (24 bp):
TTATATATATATATATACTTATTA
Found at i:27419 original size:21 final size:19
Alignment explanation
Indices: 27370--27421 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
27360 ATTATTTTCT
* *
27370 TATTATTATATATATATATA
1 TATTATTAT-TTTTTATATA
27390 TATTATTATTTTTTATATA
1 TATTATTATTTTTTATATA
27409 TATGTACTTATTT
1 TAT-TA-TTATTT
27422 ACTATGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 11 0.39
20 11 0.39
21 6 0.21
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTATTATTTTTTATATA
Found at i:27618 original size:17 final size:18
Alignment explanation
Indices: 27592--27634 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
27582 TATACATGCA
*
27592 TTTTTATATTTTTA-TAT
1 TTTTTTTATTTTTATTAT
27609 TTTTTTTA-TTTTATTAT
1 TTTTTTTATTTTTATTAT
*
27626 TTTATTTAT
1 TTTTTTTAT
27635 ACTATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTTATTTTTATTAT
Found at i:35431 original size:8 final size:8
Alignment explanation
Indices: 35420--35448 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
35410 AAAAGATAAG
35420 AATAAAAT
1 AATAAAAT
35428 AATAAAAT
1 AATAAAAT
35436 AAT-AAAT
1 AATAAAAT
35443 AATAAA
1 AATAAA
35449 TAAATTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:36298 original size:23 final size:21
Alignment explanation
Indices: 36259--36311 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 21
36249 ATAGCCTTCA
36259 AAATCCTAAAAACAAGATAAAG
1 AAATCCTAAAAACAAGA-AAAG
*
36281 ATAATCCTAAAATA-AAGAAAAT
1 A-AATCCTAAAA-ACAAGAAAAG
36303 AAATCCTAA
1 AAATCCTAA
36312 TTAAAATACT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 8 0.29
22 5 0.18
23 14 0.50
24 1 0.04
ACGTcount: A:0.62, C:0.13, G:0.06, T:0.19
Consensus pattern (21 bp):
AAATCCTAAAAACAAGAAAAG
Found at i:46889 original size:2 final size:2
Alignment explanation
Indices: 46882--46920 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
46872 AATGATGCAT
46882 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
46921 GGAATAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:49660 original size:15 final size:15
Alignment explanation
Indices: 49636--49669 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
49626 GTCGTGTTTG
49636 TTTC-ATATTTTTTT
1 TTTCAATATTTTTTT
49650 TTTCAATATTTTTTT
1 TTTCAATATTTTTTT
49665 TTTCA
1 TTTCA
49670 TAGTGATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTCAATATTTTTTT
Found at i:53503 original size:126 final size:126
Alignment explanation
Indices: 53344--53573 Score: 336
Period size: 126 Copynumber: 1.8 Consensus size: 126
53334 TCTTTCGATT
* * * *
53344 CCACTAGGGTTGCATGTTGTTTATCTTCTCTAGGTGCCAACCAGTGG-TGTCTTGACCCTGAAAT
1 CCACTAGGGATGCATGTTGTTTATCTTCTCTAGGTGCCAACCAATGGCAG-CTTGACCCTAAAAT
* **** *
53408 CTAAATTTTTTTCGATTAATTATTTATTTTACTGATGATGCCTATCATGCAATTTTTCGTAC
65 CCAAATTTAAAACGATTAATTATTTATTTTACTAATGATGCCTATCATGCAATTTTTCGTAC
53470 CCACTAGGGATGCATGTTGTTTATCTTCTCTAGGTGCCAACCAATGGCAGCTTGACCCTAAAATC
1 CCACTAGGGATGCATGTTGTTTATCTTCTCTAGGTGCCAACCAATGGCAGCTTGACCCTAAAATC
* *
53535 CGAATTTAAAACGATTAGTTATTTATTTTACTAATGATG
66 CAAATTTAAAACGATTAATTATTTATTTTACTAATGATG
53574 TCCACCCTAA
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
126 90 0.99
127 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (126 bp):
CCACTAGGGATGCATGTTGTTTATCTTCTCTAGGTGCCAACCAATGGCAGCTTGACCCTAAAATC
CAAATTTAAAACGATTAATTATTTATTTTACTAATGATGCCTATCATGCAATTTTTCGTAC
Found at i:58275 original size:26 final size:27
Alignment explanation
Indices: 58245--58310 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
58235 ATTAAAATAA
58245 AATTAATATAAATTATATTA-ATTATT
1 AATTAATATAAATTATATTATATTATT
* *
58271 TATTAAAATAAGA--ATATTATATTATT
1 AATTAATATAA-ATTATATTATATTATT
*
58297 AATT-ATATTAATTA
1 AATTAATATAAATTA
58311 CTTATTAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
24 1 0.03
25 10 0.32
26 19 0.61
27 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
AATTAATATAAATTATATTATATTATT
Found at i:58303 original size:42 final size:41
Alignment explanation
Indices: 58232--58341 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 41
58222 ATTATTATAT
58232 TTTATTAAAAT-AAA-ATTA-A-TATAAATTATATTAATTA
1 TTTATTAAAATAAAATATTATATTATAAATTATATTAATTA
*
58269 TTTATTAAAATAAGAATATTATATTATTAATTATATTAATTA
1 TTTATTAAAATAA-AATATTATATTATAAATTATATTAATTA
* *
58311 CTTATTAGAATAATAATATTATTATTA-AAAT
1 TTTATTAAAATAA-AATATTA-TATTATAAAT
58342 GTTAAAACTA
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
37 11 0.18
38 1 0.02
39 2 0.03
40 4 0.06
41 1 0.02
42 38 0.61
43 5 0.08
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (41 bp):
TTTATTAAAATAAAATATTATATTATAAATTATATTAATTA
Found at i:58586 original size:16 final size:18
Alignment explanation
Indices: 58550--58586 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
58540 GATTAAAATG
*
58550 ATATTAAAATAATATATA
1 ATATTAAAATAATATAAA
58568 ATATT-AAAT-ATATAAA
1 ATATTAAAATAATATAAA
58584 ATA
1 ATA
58587 AAAATGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.50
17 4 0.22
18 5 0.28
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATATTAAAATAATATAAA
Found at i:60485 original size:17 final size:15
Alignment explanation
Indices: 60456--60497 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
60446 TCACATGATA
60456 TAAAATAAATATTTAATT
1 TAAAAT-AATATTT--TT
60474 TAAAATAATATTTTT
1 TAAAATAATATTTTT
60489 TAAAA-AATA
1 TAAAATAATA
60498 CATTTATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.17
15 7 0.29
17 7 0.29
18 6 0.25
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAAATAATATTTTT
Found at i:67938 original size:124 final size:123
Alignment explanation
Indices: 67647--67973 Score: 308
Period size: 124 Copynumber: 2.6 Consensus size: 123
67637 AATCTAATTC
* * * * *
67647 TTTCAAATCGAGAATAAACGA-CTCATACCCCTAAACAATCATTTATTACTCTAATCGAAATGAA
1 TTTCCAATCAAGAATAAAC-ATCTCATA-CCTTAAACAGTCATTTATTACTCAAATCGAAATGAA
* * * * * *
67711 AAATATCATTATTCTGTCTTAAAATTCAATATCAATTCGAGTGAAAATGAAATATAATAA
64 AGATATCAATATTCTATCTTAAAAATCAATATCAATTCGAGCGAAAAGGAAATATAATAA
* * *
67771 TTTCTAATCAAGAATAAACATCTCATACTTTAAAGCAGTCATTTATTGCTCAAATCGAAATGCAA
1 TTTCCAATCAAGAATAAACATCTCATACCTTAAA-CAGTCATTTATTACTCAAATCGAAATG-AA
* * *
67836 AGATATCACTATTCTAT-TTAAAAATCAAT-T-AATTCGAGCGAAAACGGTAATATCAAATTA
64 AGATATCAATATTCTATCTTAAAAATCAATATCAATTCGAGCGAAAA-GGAAATAT--AATAA
* * * * *
67896 TTTCCAATCGAGAATAAATGATATTTCATACCTT-AA-AG-CATTTATTACTCCAACCGAAATGA
1 TTTCCAATCAAGAAT-AA--ACATCTCATACCTTAAACAGTCATTTATTACTCAAATCGAAATGA
*
67958 AAGATATTAATATTCT
63 AAGATATCAATATTCT
67974 CAATATCGAT
Statistics
Matches: 169, Mismatches: 25, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
122 13 0.08
123 28 0.17
124 78 0.46
125 35 0.21
126 2 0.01
127 2 0.01
128 11 0.07
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (123 bp):
TTTCCAATCAAGAATAAACATCTCATACCTTAAACAGTCATTTATTACTCAAATCGAAATGAAAG
ATATCAATATTCTATCTTAAAAATCAATATCAATTCGAGCGAAAAGGAAATATAATAA
Found at i:70441 original size:24 final size:24
Alignment explanation
Indices: 70408--70453 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
70398 GATATTGTTT
**
70408 ATTTAATTATTATGTAAATAAAAA
1 ATTTAATTATTAAATAAATAAAAA
*
70432 ATTTATTTATTAAATAAATAAA
1 ATTTAATTATTAAATAAATAAA
70454 TTTAAACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
ATTTAATTATTAAATAAATAAAAA
Found at i:70454 original size:21 final size:21
Alignment explanation
Indices: 70417--70457 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
70407 TATTTAATTA
70417 TTATGTAAATAAAAAATTTAT
1 TTATGTAAATAAAAAATTTAT
70438 TTAT-TAAATAAATAAATTTA
1 TTATGTAAATAAA-AAATTTA
70458 AACAAACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
TTATGTAAATAAAAAATTTAT
Found at i:75299 original size:261 final size:264
Alignment explanation
Indices: 74834--75359 Score: 1022
Period size: 261 Copynumber: 2.0 Consensus size: 264
74824 AGGGACCTTT
74834 TGCGCATAAGTACGCCTTGCGCCTTTTAAAACCAAGCTTTGGATAAAGATTTTACATTATAAATT
1 TGCGCATAAGTACGCCTTGCGCCTTTTAAAACCAAGCTTTGGATAAAGATTTTACATTATAAATT
74899 GCATTTTGGCTGAAACGTTCTTCCATGTTTGATTATTTTCTGAAATTCTATCATGTCTTCTTCGT
66 GCATTTTGGCTGAAACGTTCTTCCATGTTTGATTATTTTCTGAAATTCTATCATGTCTTCTTCGT
74964 TGGATGCATCATTTAATTGTACTTTGAGATGGTGACATTGAAATTGAAATGAATGTGAAGATTAG
131 TGGATGCATCATTTAATTGTACTTTGAGATGGTGACATTGAAATTGAAATGAATGTGAAGATTAG
75029 CATGAATGAGTTGCTTGCATGCAGGGATGTTCTAAGAAAGATGTACGT-AC-TGGCAATGGTTAT
196 CATGAATGAGTTGCTTGCATGCAGGGATGTTCTAAGAAAGATGTACGTAACTTGGCAATGGTTAT
75092 GAAA
261 GAAA
75096 TGCGCATAAGTACGCCTTGCGCCTTTTAAAACCAAGCTTTGGATAAAGATTTTACATTATAAATT
1 TGCGCATAAGTACGCCTTGCGCCTTTTAAAACCAAGCTTTGGATAAAGATTTTACATTATAAATT
75161 GCATTTTGGCTGAAACG-TCTTCCATGTTTGATTATTTTCTGAAATTCTATCATGTCTTCTTCGT
66 GCATTTTGGCTGAAACGTTCTTCCATGTTTGATTATTTTCTGAAATTCTATCATGTCTTCTTCGT
75225 TGGATGCATCATTTAATTGTACTTTGAGATGGTGACATTGAAATTGAAATGAATGTGAAGATTAG
131 TGGATGCATCATTTAATTGTACTTTGAGATGGTGACATTGAAATTGAAATGAATGTGAAGATTAG
*
75290 CATGAATGAGTTGCTTGCATGCAGGGATGTTCTAAGAAAGATGTACGTAACTTTGCAATGGTTAT
196 CATGAATGAGTTGCTTGCATGCAGGGATGTTCTAAGAAAGATGTACGTAACTTGGCAATGGTTAT
75355 GAAA
261 GAAA
75359 T
1 T
75360 CTAGATTAGC
Statistics
Matches: 261, Mismatches: 1, Indels: 3
0.98 0.00 0.01
Matches are distributed among these distances:
261 160 0.61
262 84 0.32
263 17 0.07
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.37
Consensus pattern (264 bp):
TGCGCATAAGTACGCCTTGCGCCTTTTAAAACCAAGCTTTGGATAAAGATTTTACATTATAAATT
GCATTTTGGCTGAAACGTTCTTCCATGTTTGATTATTTTCTGAAATTCTATCATGTCTTCTTCGT
TGGATGCATCATTTAATTGTACTTTGAGATGGTGACATTGAAATTGAAATGAATGTGAAGATTAG
CATGAATGAGTTGCTTGCATGCAGGGATGTTCTAAGAAAGATGTACGTAACTTGGCAATGGTTAT
GAAA
Found at i:76489 original size:22 final size:22
Alignment explanation
Indices: 76464--76511 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
76454 AATTTCTGTT
76464 TTAACCGAATTAATCGATCGTA
1 TTAACCGAATTAATCGATCGTA
76486 TTAACCGAATTAATCGATCGTA
1 TTAACCGAATTAATCGATCGTA
76508 TTAA
1 TTAA
76512 ATATTTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (22 bp):
TTAACCGAATTAATCGATCGTA
Found at i:77618 original size:21 final size:20
Alignment explanation
Indices: 77594--77682 Score: 87
Period size: 21 Copynumber: 4.4 Consensus size: 20
77584 CGTATCATAG
77594 TATTATTATATTATTTGTATA
1 TATTATTATATTATTTG-ATA
77615 TATTATTAATATTATTT--TA
1 TATTATT-ATATTATTTGATA
*
77634 -ATAATTAT-TATATTTGATA
1 TATTATTATAT-TATTTGATA
77653 TCATTATTATATTATTATGATA
1 T-ATTATTATATTATT-TGATA
*
77675 TAATATTA
1 TATTATTA
77683 AATACATATT
Statistics
Matches: 57, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
16 1 0.02
17 7 0.12
18 5 0.09
19 4 0.07
21 24 0.42
22 16 0.28
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.57
Consensus pattern (20 bp):
TATTATTATATTATTTGATA
Found at i:77669 original size:11 final size:11
Alignment explanation
Indices: 77594--77675 Score: 54
Period size: 11 Copynumber: 8.0 Consensus size: 11
77584 CGTATCATAG
77594 TATTATTATAT
1 TATTATTATAT
77605 TATT-TGTATA-
1 TATTAT-TATAT
77615 TATTATTAATAT
1 TATTATT-ATAT
77627 TATT-TTA-AT
1 TATTATTATAT
*
77636 AATTA-T-TA-
1 TATTATTATAT
*
77644 TATT-TGATAT
1 TATTATTATAT
*
77654 CATTATTATAT
1 TATTATTATAT
*
77665 TATTATGATAT
1 TATTATTATAT
77676 AATATTAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 20
0.67 0.09 0.25
Matches are distributed among these distances:
8 3 0.06
9 9 0.17
10 10 0.19
11 28 0.52
12 4 0.07
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.59
Consensus pattern (11 bp):
TATTATTATAT
Found at i:79604 original size:20 final size:21
Alignment explanation
Indices: 79555--79610 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
79545 GCGGAGGTTT
79555 TCGATACCCTTGAAGGGTGGTA
1 TCGATACCCTT-AAGGGTGGTA
79577 TC-AGTACCCTT-AGGGTGGTA
1 TCGA-TACCCTTAAGGGTGGTA
*
79597 TCGATACCTTTAAG
1 TCGATACCCTTAAG
79611 TATGAAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 17 0.57
21 4 0.13
22 9 0.30
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (21 bp):
TCGATACCCTTAAGGGTGGTA
Found at i:80108 original size:21 final size:21
Alignment explanation
Indices: 80084--80162 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
80074 TCGAGGGTCT
80084 TATGTGGTCATTCGGGACAAA
1 TATGTGGTCATTCGGGACAAA
* *
80105 TATGTGGTC-CTCTGGGATAAA
1 TATGTGGTCATTC-GGGACAAA
*
80126 TATGTGG-CATTTCGGTACAAA
1 TATGTGGTCA-TTCGGGACAAA
*
80147 CCTATGTGGTCTTTCG
1 --TATGTGGTCATTCG
80163 AGATAATTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
20 3 0.07
21 29 0.63
22 2 0.04
23 11 0.24
24 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (21 bp):
TATGTGGTCATTCGGGACAAA
Found at i:88177 original size:31 final size:31
Alignment explanation
Indices: 88142--88248 Score: 151
Period size: 31 Copynumber: 3.5 Consensus size: 31
88132 GAACTGCTAC
* ** *
88142 GCATTATCTAAATGTGAACCTGACATACTGT
1 GCATTATCTGAATGCAAACTTGACATACTGT
* *
88173 GCATTTTATGAATGCAAACTTGACATACTGT
1 GCATTATCTGAATGCAAACTTGACATACTGT
88204 GCATTATCTGAATGCAAACTTGACATACTGT
1 GCATTATCTGAATGCAAACTTGACATACTGT
*
88235 GCATTATTTGAATG
1 GCATTATCTGAATG
88249 TAAATGCATT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 67 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (31 bp):
GCATTATCTGAATGCAAACTTGACATACTGT
Found at i:103253 original size:48 final size:48
Alignment explanation
Indices: 103182--103279 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
103172 GAGGACTGTT
103182 CTATACTAGAGGTATATTTTGCTTCTCCATTATTGGATCTTCCGATTG
1 CTATACTAGAGGTATATTTTGCTTCTCCATTATTGGATCTTCCGATTG
103230 CTATACTAGAGGTATATTTTGCTTCTCCATTATTGGATCTTCCGATTG
1 CTATACTAGAGGTATATTTTGCTTCTCCATTATTGGATCTTCCGATTG
103278 CT
1 CT
103280 GTCCGTAAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.44
Consensus pattern (48 bp):
CTATACTAGAGGTATATTTTGCTTCTCCATTATTGGATCTTCCGATTG
Found at i:113889 original size:15 final size:15
Alignment explanation
Indices: 113869--113950 Score: 85
Period size: 15 Copynumber: 5.5 Consensus size: 15
113859 TTTTAGAAAA
113869 TGAATTACTGGAATT
1 TGAATTACTGGAATT
*
113884 TGAATTATTGGAATT
1 TGAATTACTGGAATT
**
113899 TGAATTACTGGAAAA
1 TGAATTACTGGAATT
* *
113914 TAAATTACTGTAATT
1 TGAATTACTGGAATT
* **
113929 TGAAAT-CTGGAAAA
1 TGAATTACTGGAATT
113943 TGAATTAC
1 TGAATTAC
113951 ATTTCTTGAA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
14 10 0.19
15 42 0.81
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.37
Consensus pattern (15 bp):
TGAATTACTGGAATT
Found at i:113920 original size:30 final size:30
Alignment explanation
Indices: 113869--113950 Score: 103
Period size: 30 Copynumber: 2.8 Consensus size: 30
113859 TTTTAGAAAA
** *
113869 TGAATTACTGGAATTTGAATTATTGGAATT
1 TGAATTACTGGAAAATGAATTACTGGAATT
* *
113899 TGAATTACTGGAAAATAAATTACTGTAATT
1 TGAATTACTGGAAAATGAATTACTGGAATT
*
113929 TGAAAT-CTGGAAAATGAATTAC
1 TGAATTACTGGAAAATGAATTAC
113951 ATTTCTTGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 15 0.33
30 30 0.67
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.37
Consensus pattern (30 bp):
TGAATTACTGGAAAATGAATTACTGGAATT
Found at i:114344 original size:23 final size:22
Alignment explanation
Indices: 114296--114363 Score: 55
Period size: 23 Copynumber: 3.0 Consensus size: 22
114286 GTGTTATATT
**
114296 ATATTTTAAAATATTAATTAGT
1 ATATTTTAAAATATTAATTAAA
* *
114318 ATATTTTAAATATCTTTATTAAA
1 ATATTTTAAA-ATATTAATTAAA
* *
114341 ATATTATTAGATTATTATATTAA
1 ATATT-TTAAAATATTA-ATTAA
114364 TATTAAATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
22 10 0.29
23 16 0.46
24 9 0.26
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (22 bp):
ATATTTTAAAATATTAATTAAA
Found at i:114357 original size:19 final size:19
Alignment explanation
Indices: 114333--114403 Score: 54
Period size: 19 Copynumber: 3.6 Consensus size: 19
114323 TTAAATATCT
*
114333 TTATTAAAATATTATTAGA
1 TTATTAAAATATTATTAAA
* * *
114352 TTATTATATTAATATTAAA
1 TTATTAAAATATTATTAAA
* *
114371 TATATAAATAATATTATT-CA
1 T-TATTAA-AATATTATTAAA
114391 TTATTAAATATAT
1 TTATTAAA-ATAT
114404 AAAAAATTAT
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
18 1 0.03
19 25 0.64
20 6 0.15
21 7 0.18
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (19 bp):
TTATTAAAATATTATTAAA
Found at i:114402 original size:28 final size:30
Alignment explanation
Indices: 114327--114493 Score: 102
Period size: 30 Copynumber: 5.7 Consensus size: 30
114317 TATATTTTAA
* * *
114327 ATATCTTTATTAAA-ATATTATTAGATTATT
1 ATATATTTATTAAATATATAAATA-ATTATT
*
114357 ATAT-TAATATTAAATATATAAATAA-TATT
1 ATATAT-TTATTAAATATATAAATAATTATT
*
114386 AT-TCA-TTATTAAATATATAAAAAATTATT
1 ATAT-ATTTATTAAATATATAAATAATTATT
* *
114415 ATATATTTATTAAA-ATAAAAATATAATATCT
1 ATATATTTATTAAATATATAAATA-ATTAT-T
* * *
114446 -TATA-TTATTATA-ATATAATTGATTATT
1 ATATATTTATTAAATATATAAATAATTATT
* *
114473 TTATTATATATTAAA-ATATAA
1 ATA-TATTTATTAAATATATAA
114494 TATTATATTA
Statistics
Matches: 110, Mismatches: 15, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
27 1 0.01
28 24 0.22
29 36 0.33
30 41 0.37
31 8 0.07
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (30 bp):
ATATATTTATTAAATATATAAATAATTATT
Found at i:114491 original size:30 final size:28
Alignment explanation
Indices: 114334--114520 Score: 96
Period size: 28 Copynumber: 6.4 Consensus size: 28
114324 TAAATATCTT
* *
114334 TATTAAAATATTATTA-GATTATTATATTAA
1 TATTAAAATATAATTATTATT-TTATA-T-A
* * *
114364 TATTAAATATATAAATAATATTATT-CAT-
1 TATTAAA-ATATAATTATTATT-TTATATA
** * *
114392 TATTAAATATATAAAAAATTATTATATATT
1 TATTAAA-ATAT-AATTATTATTTTATATA
* * *
114422 TATTAAAATAAAAATATAATATCTTATAT-
1 TATTAAAAT-ATAAT-TATTATTTTATATA
*
114451 TATTATAATATAATTGATTATTTTATTATA
1 TATTAAAATATAATT-ATTATTTTA-TATA
* *
114481 TATTAAAATATAA-TATTATATTATAAA
1 TATTAAAATATAATTATTATTTTATATA
114508 TATTAATAATATA
1 TATTAA-AATATA
114521 TTTTAAATAT
Statistics
Matches: 125, Mismatches: 21, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
27 10 0.08
28 38 0.30
29 26 0.21
30 37 0.30
31 8 0.06
32 6 0.05
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (28 bp):
TATTAAAATATAATTATTATTTTATATA
Found at i:114497 original size:20 final size:20
Alignment explanation
Indices: 114477--114537 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 20
114467 ATTATTTTAT
114477 TATATATTAAAATA-TAATA
1 TATATATTAAAATATTAATA
114496 T-TATATTATAAATATTAATAA
1 TATATATTA-AAATATTAAT-A
* *
114517 TATATTTTAAATATTTTAATA
1 TATATATTAAA-ATATTAATA
114538 ATTAATATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
18 7 0.20
19 6 0.17
20 4 0.11
21 5 0.14
22 13 0.37
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TATATATTAAAATATTAATA
Found at i:114497 original size:25 final size:25
Alignment explanation
Indices: 114406--114548 Score: 73
Period size: 25 Copynumber: 5.6 Consensus size: 25
114396 AAATATATAA
* * *
114406 AAAATTATTATATATTTATTA-AAATA
1 AAAA-TATAATAT-TTTATTATATATT
*
114432 AAAATATAATATCTTATATTATTATAAT
1 AAAATATAATAT-TT-TATTA-TATATT
* *
114460 ATAAT-TGATTATTTTATTATATATT
1 AAAATAT-AATATTTTATTATATATT
*
114485 AAAATATAATATTATATTATAAATATT
1 AAAATATAATATTTTATTAT--ATATT
* * *
114512 AATA-AT-ATATTTTA-AATATTTT
1 AAAATATAATATTTTATTATATATT
114534 AATAAT-TAATATTTT
1 AA-AATATAATATTTT
114549 GATGAAATTG
Statistics
Matches: 91, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
22 6 0.07
23 2 0.02
24 9 0.10
25 36 0.40
26 17 0.19
27 11 0.12
28 10 0.11
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (25 bp):
AAAATATAATATTTTATTATATATT
Found at i:114517 original size:58 final size:57
Alignment explanation
Indices: 114333--114520 Score: 177
Period size: 58 Copynumber: 3.2 Consensus size: 57
114323 TTAAATATCT
* *
114333 TTATTAAAATATTATTAGATTATTATATTA-ATATTAAATATATAA-ATAATATTATTCA
1 TTATTAAAATATAATT-GATTATTATATTATATATTAAA-ATATAATATAATATTA-TAA
*** * *
114391 TTATTAAATATATAAAAAATTATTATA-TATTTATTAAAATAAAAATATAATATCT-TATA
1 TTATTAAA-ATATAATTGATTATTATATTATATATTAAAAT-ATAATATAATAT-TATA-A
* * *
114450 TTATTATAATATAATTGATTATTTTATTATATATTAAAATATAATATTATATTATAA
1 TTATTAAAATATAATTGATTATTATATTATATATTAAAATATAATATAATATTATAA
*
114507 ATATTAATAATATA
1 TTATTAA-AATATA
114521 TTTTAAATAT
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
57 11 0.11
58 60 0.58
59 32 0.31
60 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (57 bp):
TTATTAAAATATAATTGATTATTATATTATATATTAAAATATAATATAATATTATAA
Found at i:114539 original size:22 final size:20
Alignment explanation
Indices: 114477--114531 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
114467 ATTATTTTAT
* *
114477 TATATATTAAA-ATATAATAT
1 TATATTTTAAATAT-TAATAA
*
114497 TATATTATAAATATTAATAA
1 TATATTTTAAATATTAATAA
114517 TATATTTTAAATATT
1 TATATTTTAAATATT
114532 TTAATAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 28 0.93
21 2 0.07
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TATATTTTAAATATTAATAA
Found at i:114807 original size:41 final size:42
Alignment explanation
Indices: 114732--114823 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 42
114722 TTCTTCCAAC
* ** * **
114732 CAAACACTGGAAAACATTTTCCGGAAAACGAATTATTTAAAA
1 CAAACACGGGAAAACATTTTCCAAAAAACAAATTACATAAAA
* *
114774 CAAACACGGGAAAA-ATTTTCCAAAAAATAAATTACATGAAA
1 CAAACACGGGAAAACATTTTCCAAAAAACAAATTACATAAAA
114815 CAAACACGG
1 CAAACACGG
114824 AATTTCGGGG
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 29 0.69
42 13 0.31
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (42 bp):
CAAACACGGGAAAACATTTTCCAAAAAACAAATTACATAAAA
Found at i:121650 original size:41 final size:42
Alignment explanation
Indices: 121603--121683 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
121593 TTTGGTAGCT
* * *
121603 GAAAAATGTTTT-CAGTGTTTGATAGTTGTAATTGGTTTTAA
1 GAAAAATATTTTCCAGTGTTTAATAGTTGTAATTGATTTTAA
121644 GAAAAATATTTTCCAGTGTTTAATAGTTGTAATTGATTTT
1 GAAAAATATTTTCCAGTGTTTAATAGTTGTAATTGATTTT
121684 CTTAAATGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 11 0.31
42 25 0.69
ACGTcount: A:0.31, C:0.04, G:0.19, T:0.47
Consensus pattern (42 bp):
GAAAAATATTTTCCAGTGTTTAATAGTTGTAATTGATTTTAA
Found at i:121821 original size:19 final size:19
Alignment explanation
Indices: 121797--121847 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
121787 GCACTCAAAA
121797 TAATATTATTTTATT-TATT
1 TAATATTATTTTATTAT-TT
* *
121816 TAATATTAATATATTATTT
1 TAATATTATTTTATTATTT
121835 TAATATTATTTTA
1 TAATATTATTTTA
121848 ATGAAAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 26 0.96
20 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TAATATTATTTTATTATTT
Found at i:121840 original size:11 final size:11
Alignment explanation
Indices: 121797--121849 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
121787 GCACTCAAAA
121797 TAATATTATTT
1 TAATATTATTT
121808 T-AT-TTA-TT
1 TAATATTATTT
*
121816 TAATATTA--A
1 TAATATTATTT
121825 T-ATATTATTT
1 TAATATTATTT
121835 TAATATTATTT
1 TAATATTATTT
121846 TAAT
1 TAAT
121850 GAAAATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
8 9 0.26
9 6 0.17
10 6 0.17
11 14 0.40
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TAATATTATTT
Found at i:122281 original size:30 final size:30
Alignment explanation
Indices: 122225--122281 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
122215 TTTGGAAACT
*
122225 TTTTACAATAATTCATTTTGGATAAATCAA
1 TTTTACAATAATTCATTTTCGATAAATCAA
122255 TTTT-CAACTAATTCATTTTACG-TAAAT
1 TTTTACAA-TAATTCATTTT-CGATAAAT
122282 TATTTTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 3 0.12
30 20 0.83
31 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (30 bp):
TTTTACAATAATTCATTTTCGATAAATCAA
Found at i:129501 original size:39 final size:37
Alignment explanation
Indices: 129362--129557 Score: 130
Period size: 35 Copynumber: 5.5 Consensus size: 37
129352 TTTAAACTTA
*
129362 TATATAATATATAAGTTT--TAAAACATTTT-GAAAAT
1 TATATAATATAT-AGTTTAAAAAAACATTTTGGAAAAT
* ** *
129397 TATATAAAATATAGTTT-TGAAATCATTTT-G-AAA-
1 TATATAATATATAGTTTAAAAAAACATTTTGGAAAAT
* * *
129430 -CTATAATATTTAGTTTTTAAAATAACATTTTTGGAAAATT
1 TATATAATATATAG--TTTAAAAAAACA-TTTTGGAAAA-T
*
129470 TATATAATATATAGTTTAAAAAAAACATTTTGGAAAGCT
1 TATATAATATATAGTTT-AAAAAAACATTTTGGAAA-AT
* * *
129509 TATATAATAT-T--TTT--AAAATCATTTTTGAAAAC
1 TATATAATATATAGTTTAAAAAAACATTTTGGAAAAT
129541 TATATAATATATAGTTT
1 TATATAATATATAGTTT
129558 TGAAAAACGT
Statistics
Matches: 128, Mismatches: 18, Indels: 30
0.73 0.10 0.17
Matches are distributed among these distances:
32 20 0.16
33 15 0.12
34 11 0.09
35 28 0.22
36 7 0.05
37 1 0.01
38 4 0.03
39 23 0.18
40 8 0.06
41 11 0.09
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (37 bp):
TATATAATATATAGTTTAAAAAAACATTTTGGAAAAT
Found at i:129564 original size:71 final size:71
Alignment explanation
Indices: 129364--129589 Score: 238
Period size: 73 Copynumber: 3.2 Consensus size: 71
129354 TAAACTTATA
* *
129364 TATAATATATAAG-TTTTAAAA-CA-TTTTGAAAATTATATAAAATATAGTTTTG--AAATCATT
1 TATAATATAT-AGTTTTTAAAATCATTTTTGAAAATTATATAATATATAGTTTTGAAAAAACATT
129424 TTGAAAC
65 TTGAAAC
* **
129431 TATAATATTTAGTTTTTAAAATAACATTTTTGGAAAATTTATATAATATATAGTTTAAAAAAAAC
1 TATAATATATAGTTTTTAAAAT--CATTTTT-GAAAA-TTATATAATATATAGTTTTGAAAAAAC
129496 ATTTTGGAAAGC
62 ATTTT-GAAA-C
* *
129508 T-T-ATATAATA-TTTTTAAAATCATTTTTGAAAACTATATAATATATAGTTTTG-AAAAACGTT
1 TATAATAT-ATAGTTTTTAAAATCATTTTTGAAAATTATATAATATATAGTTTTGAAAAAACATT
*
129569 TTTAAA-
65 TTGAAAC
129575 TATAATATATAGTTT
1 TATAATATATAGTTT
129590 AAATTTTTTT
Statistics
Matches: 133, Mismatches: 11, Indels: 28
0.77 0.06 0.16
Matches are distributed among these distances:
66 2 0.02
67 18 0.14
68 4 0.03
69 10 0.08
70 12 0.09
71 21 0.16
72 10 0.08
73 24 0.18
75 23 0.17
76 7 0.05
77 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.44
Consensus pattern (71 bp):
TATAATATATAGTTTTTAAAATCATTTTTGAAAATTATATAATATATAGTTTTGAAAAAACATTT
TGAAAC
Found at i:129571 original size:110 final size:105
Alignment explanation
Indices: 129313--129571 Score: 238
Period size: 108 Copynumber: 2.4 Consensus size: 105
129303 AAAAAATATT
* * ** ** *
129313 TTTTGAAATGTATATTATATAGTTTTTTAAAACGTTTTTTTTAAACTTATATATAATATATAAGT
1 TTTTGAAA-CTATAATATATAGTTTTAAAAAACG-TTTTTGGAAAATTATATATAATATATAAGT
* *
129378 TTTAAAACATTTTGAAAATTATATAAAATATAGTTTTGAAATCA
64 TTAAAAACATTTTGAAAATTATAT-AAATATA-TTTTAAAATCA
* *
129422 TTTTGAAACTATAATATTTAGTTTTTAAAATAACATTTTTGGAAAATT-TATATAATATAT-AGT
1 TTTTGAAACTATAATATATAG-TTTTAAAA-AACGTTTTTGGAAAATTATATATAATATATAAGT
*
129485 TTAAAAAAAACATTTTGGAAAGCTTATAT-AATAT-TTTTAAAATCA
64 TT---AAAAACATTTT-GAAA-ATTATATAAATATATTTTAAAATCA
*
129530 TTTTTGAAAACTATATAATATATAGTTTTGAAAAACGTTTTT
1 -TTTTG-AAAC--TATAATATATAGTTTTAAAAAACGTTTTT
129572 AAATATAATA
Statistics
Matches: 124, Mismatches: 15, Indels: 21
0.77 0.09 0.13
Matches are distributed among these distances:
107 5 0.04
108 32 0.26
109 29 0.23
110 30 0.24
111 11 0.09
112 17 0.14
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (105 bp):
TTTTGAAACTATAATATATAGTTTTAAAAAACGTTTTTGGAAAATTATATATAATATATAAGTTT
AAAAACATTTTGAAAATTATATAAATATATTTTAAAATCA
Found at i:130911 original size:9 final size:10
Alignment explanation
Indices: 130893--131019 Score: 50
Period size: 9 Copynumber: 12.3 Consensus size: 10
130883 AATTTCTTTG
130893 TTTTATTTAT
1 TTTTATTTAT
130903 TTTTA-TTAT
1 TTTTATTTAT
* **
130912 TATT-TTTCC
1 TTTTATTTAT
*
130921 TTTGATTTA-
1 TTTTATTTAT
*
130930 TTTTCTTTA-
1 TTTTATTTAT
*
130939 TATTACTATTAT
1 TTTTA-T-TTAT
130951 TTTTATTT-T
1 TTTTATTTAT
130960 ATTTTATTT-T
1 -TTTTATTTAT
*
130970 TTCCTTTTTTAT
1 TT--TTATTTAT
130982 CTTTTCATTTATT
1 -TTTT-ATTTA-T
130995 TATTTATTTATT
1 T-TTTATTTA-T
*
131007 TTTTACTTAT
1 TTTTATTTAT
131017 TTT
1 TTT
131020 CCTATCTAAC
Statistics
Matches: 90, Mismatches: 14, Indels: 26
0.69 0.11 0.20
Matches are distributed among these distances:
9 24 0.27
10 24 0.27
11 18 0.20
12 18 0.20
13 6 0.07
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (10 bp):
TTTTATTTAT
Found at i:130979 original size:15 final size:15
Alignment explanation
Indices: 130961--131011 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
130951 TTTTATTTTA
*
130961 TTTTATTTTTTCCTT
1 TTTTATTTTTTCATT
*
130976 TTTTATCTTTTCATT
1 TTTTATTTTTTCATT
130991 TATTTATTTATTT-ATT
1 T-TTTATTT-TTTCATT
131007 TTTTA
1 TTTTA
131012 CTTATTTTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 18 0.58
16 10 0.32
17 3 0.10
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTTTTTCATT
Found at i:136348 original size:84 final size:83
Alignment explanation
Indices: 136157--137128 Score: 1153
Period size: 84 Copynumber: 11.7 Consensus size: 83
136147 TATACAAACT
* * * * * *
136157 ATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTG---CCAAAGACCCTCGAGTTCGATTACAC
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGC
* *
136219 TCAGCTTCGAGGGCACATC
66 TCAGC-TCCAAGGCACATC
* * * * *
136238 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACG
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCACC-AAAGACCTTCGAGTTCGACTACG
*
136303 CTCAGCTCCAAGGCATATC
65 CTCAGCTCCAAGGCACATC
* *
136322 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGGCATTCGAGTTCGACTACG
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACG
136387 CTCAGCTCCAAGGCACATC
65 CTCAGCTCCAAGGCACATC
* * * * *
136406 ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG---CCAAAGACCCTCAAGTTCGATTACAC
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGC
* *
136468 TCAGCTTCGAGGGCACATC
66 TCAGC-TCCAAGGCACATC
136487 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACG
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACG
*
136552 CTCAGCTCCAAGGCATATC
65 CTCAGCTCCAAGGCACATC
* * *
136571 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGGCCTTCGAGTTTGACTACT
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACG
136636 CTCAGCTCCAAGGCACATC
65 CTCAGCTCCAAGGCACATC
* * * * * * **
136655 ATTTGCAGCATAGCTTAAGTCGAGAAAGGCTATCTGCCA--AATA-TCC-TCAAGTTCGATTATA
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCACCAA-AGACCTTCGAGTTCGACTACG
* *
136716 CTCAGCTTCGAGGGCACATC
65 CTCAGC-TCCAAGGCACATC
*
136736 ATTTGCAGCATAACTTAAGTTGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACG
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACG
*
136801 CTCAGCTCCAAGGCATATC
65 CTCAGCTCCAAGGCACATC
* * *
136820 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAACTAAAGACCTTTGAGTTCGACTACG
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACG
*
136885 CTCAGCTTCAAGGCACATC
65 CTCAGCTCCAAGGCACATC
* * * * * *
136904 ATTTGCAGTATAGCTTAAATCGAGAAGGGCTATCTG---CCAAAGA-CTCTCGAGTTCGATTACA
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCACCAAAGACCT-TCGAGTTCGACTACG
* *
136965 CTCAGCTTCGAGGGCACATC
65 CTCAGC-TCCAAGGCACATC
* * * * * *
136985 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTTGACTACG
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCACC-AAAGACCTTCGAGTTCGACTACG
* *
137050 CTCAGCTCTAAGGCATATC
65 CTCAGCTCCAAGGCACATC
* * * *
137069 ATTTGCAGCATAACTTAAGTCAAGAAGGGTTATGTGCCAACCGAAGACCTCCGAGTTCGA
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGA
137129 TTACATTTCA
Statistics
Matches: 760, Mismatches: 106, Indels: 47
0.83 0.12 0.05
Matches are distributed among these distances:
79 2 0.00
80 65 0.09
81 162 0.21
82 2 0.00
83 2 0.00
84 426 0.56
85 99 0.13
86 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (83 bp):
ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGC
TCAGCTCCAAGGCACATC
Found at i:136595 original size:249 final size:249
Alignment explanation
Indices: 136157--137128 Score: 1579
Period size: 249 Copynumber: 3.9 Consensus size: 249
136147 TATACAAACT
* *
136157 ATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
* *
136222 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACC
66 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCACCAAAAGACC
136287 TTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGT
131 TTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGT
* *
136352 TATCTGCCAACCAAAGGCATTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
196 TATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
*
136406 ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
* * *
136471 GCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACC-AAAGAC
66 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCC-ACCAAAAGAC
136535 CTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGG
130 CTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGG
* * *
136600 TTATCTGCCAACCAAAGGCCTTCGAGTTTGACTACTCTCAGCTCCAAGGCACATC
195 TTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * * *
136655 ATTTGCAGCATAGCTTAAGTCGAGAAAGGCTATCTGCCAAATATCCTCAAGTTCGATTATACTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
* * **
136720 GCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTTGAGAAGGGTTATCTGCCAACC-AAAGAC
66 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCC-ACCAAAAGAC
136784 CTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGG
130 CTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGG
* * * *
136849 TTATCTACCAACTAAAGACCTTTGAGTTCGACTACGCTCAGCTTCAAGGCACATC
195 TTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * * *
136904 ATTTGCAGTATAGCTTAAATCGAGAAGGGCTATCTGCCAAAGACTCTCGAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
* *
136969 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACC
66 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCACCAAAAGACC
* * *
137034 TTCGAGTTTGACTACGCTCAGCTCTAAGGCATATCATTTGCAGCATAACTTAAGTCAAGAAGGGT
131 TTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGT
* * *
137099 TATGTGCCAACCGAAGACCTCCGAGTTCGA
196 TATCTGCCAACCAAAGACCTTCGAGTTCGA
137129 TTACATTTCA
Statistics
Matches: 674, Mismatches: 47, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
248 3 0.00
249 668 0.99
250 3 0.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (249 bp):
ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCACCAAAAGACC
TTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGT
TATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
Found at i:137994 original size:73 final size:69
Alignment explanation
Indices: 137888--138110 Score: 222
Period size: 73 Copynumber: 3.2 Consensus size: 69
137878 ACTTATATAC
* *
137888 AATATATAAG-TTTT-AAAACA-TTTTGAAAATTATACAATATATAGTTTTGAAATCATTTTGAA
1 AATATAT-AGTTTTTAAAAACATTTTTGAAAATTATATAATATATAGTTTTGAAAACATTTTGAA
137950 AATAT
65 AATAT
* *
137955 AATATTTAGTTTTTAAAAAAACATTTTTGGAAAATTTATATAATATATAGTTTTAAAAAAACATT
1 AATATATAGTTTTT--AAAAACATTTTT-GAAAA-TTATATAATATATAGTTTT--GAAAACATT
* **
138020 TTGGAAAGCT
60 TTGAAAATAT
* * * * *
138030 TATATAATA-TTTTTAAAATCATTTTTGAAAACTATATAATATATAGTTTTGAAAAACGTTTT-T
1 AATAT-ATAGTTTTTAAAAACATTTTTGAAAATTATATAATATATAGTTTTG-AAAACATTTTGA
138093 AAATAT
64 AAATAT
138099 AATATATAGTTT
1 AATATATAGTTT
138111 AATTTTTTTG
Statistics
Matches: 127, Mismatches: 17, Indels: 22
0.77 0.10 0.13
Matches are distributed among these distances:
66 2 0.02
67 10 0.08
68 3 0.02
69 11 0.09
70 15 0.12
71 22 0.17
72 10 0.08
73 29 0.23
75 23 0.18
76 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (69 bp):
AATATATAGTTTTTAAAAACATTTTTGAAAATTATATAATATATAGTTTTGAAAACATTTTGAAA
ATAT
Found at i:138000 original size:41 final size:39
Alignment explanation
Indices: 137869--138085 Score: 141
Period size: 35 Copynumber: 5.9 Consensus size: 39
137859 TTTAAAACTT
*
137869 ATTTT-GAAAACTTATATACAATATATAAGTTTT---AAAAC
1 ATTTTGGAAAACTTATAT--AATAT-TTAGTTTTAAAAAAAC
* * * *
137907 ATTTT-GAAAA-TTATACAATATATAGTTTT--GAAATC
1 ATTTTGGAAAACTTATATAATATTTAGTTTTAAAAAAAC
137942 ATTTT-G-AAA---ATATAATATTTAGTTTTTAAAAAAAC
1 ATTTTGGAAAACTTATATAATATTTAG-TTTTAAAAAAAC
* *
137977 ATTTTTGGAAAATTTATATAATATATAGTTTTAAAAAAAC
1 A-TTTTGGAAAACTTATATAATATTTAGTTTTAAAAAAAC
* *
138017 ATTTTGGAAAGCTTATATAATA--T--TTTT--AAAATC
1 ATTTTGGAAAACTTATATAATATTTAGTTTTAAAAAAAC
* * *
138050 ATTTTTGAAAAC-TATATAATATATAGTTTTGAAAAA
1 ATTTTGGAAAACTTATATAATATTTAGTTTTAAAAAA
138086 CGTTTTTAAA
Statistics
Matches: 149, Mismatches: 14, Indels: 32
0.76 0.07 0.16
Matches are distributed among these distances:
32 20 0.13
33 19 0.13
34 10 0.07
35 24 0.16
36 8 0.05
37 7 0.05
38 17 0.11
39 19 0.13
40 13 0.09
41 12 0.08
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (39 bp):
ATTTTGGAAAACTTATATAATATTTAGTTTTAAAAAAAC
Found at i:138092 original size:37 final size:36
Alignment explanation
Indices: 137793--138110 Score: 191
Period size: 38 Copynumber: 8.8 Consensus size: 36
137783 TTTGAAAATG
* * *
137793 TTTTTGAAAAAAATATAGTATATAGTTTTCAAAAAAATA
1 TTTTTG-AAAATATATAATATATAGTTTT--AAAAAACA
* * ** *
137832 TTTTTTG-AAATGTATATTATATAGTTTTTTAAAACT
1 -TTTTTGAAAATATATAATATATAGTTTTAAAAAACA
137868 TATTTTGAAAACTTATATACAATATATAAGTTTT--AAAACA
1 T-TTTTGAAAA--TATAT--AATATAT-AGTTTTAAAAAACA
* * *
137908 -TTTTGAAAATTATACAATATATAGTTTT-GAAATCA
1 TTTTTGAAAA-TATATAATATATAGTTTTAAAAAACA
*
137943 -TTTTG-AAA-ATATAATATTTAGTTTTTAAAAAAACA
1 TTTTTGAAAATATATAATATATAG-TTTT-AAAAAACA
137978 TTTTTGGAAAATTTATATAATATATAGTTTTAAAAAAACA
1 TTTTT-GAAAA--TATATAATATATAGTTTT-AAAAAACA
* * * *
138018 TTTTGGAAAGCT-TAT-ATA-ATA-TTTTTAAAATCA
1 TTTTTGAAA-ATATATAATATATAGTTTTAAAAAACA
* *
138051 TTTTTGAAAACTATATAATATATAGTTTTGAAAAACG
1 TTTTTGAAAA-TATATAATATATAGTTTTAAAAAACA
138088 TTTTT---AA-ATATAATATATAGTTT
1 TTTTTGAAAATATATAATATATAGTTT
138111 AATTTTTTTG
Statistics
Matches: 229, Mismatches: 26, Indels: 54
0.74 0.08 0.17
Matches are distributed among these distances:
32 27 0.12
33 19 0.08
34 18 0.08
35 29 0.13
36 19 0.08
37 26 0.11
38 31 0.14
39 8 0.03
40 28 0.12
41 18 0.08
42 6 0.03
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (36 bp):
TTTTTGAAAATATATAATATATAGTTTTAAAAAACA
Found at i:139404 original size:15 final size:13
Alignment explanation
Indices: 139382--139418 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 13
139372 AAATTTTTTC
139382 TTATTTATTTGATT
1 TTATTTATTTG-TT
139396 TTAATTTATTTGTT
1 TT-ATTTATTTGTT
139410 TTATTTATT
1 TTATTTATT
139419 ATTATTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.32
14 6 0.27
15 9 0.41
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (13 bp):
TTATTTATTTGTT
Found at i:139422 original size:3 final size:3
Alignment explanation
Indices: 139414--139484 Score: 142
Period size: 3 Copynumber: 23.7 Consensus size: 3
139404 TTTGTTTTAT
139414 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
139462 TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
139485 TTCCTTTGAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:139577 original size:33 final size:34
Alignment explanation
Indices: 139524--139589 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
139514 ATTATTTCAT
* *
139524 TCTTTTTATTTTATTTTATTTTTTCCTT-TTTTG
1 TCTTTTCATTTTATTTTATTTTTTACTTATTTTG
139557 TCTTTTCA-TTTATTTATATTTTTTACTTATTTT
1 TCTTTTCATTTTATTT-TATTTTTTACTTATTTT
139590 CCTATCTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 7 0.24
33 18 0.62
34 4 0.14
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.76
Consensus pattern (34 bp):
TCTTTTCATTTTATTTTATTTTTTACTTATTTTG
Found at i:141356 original size:52 final size:49
Alignment explanation
Indices: 141268--141399 Score: 122
Period size: 52 Copynumber: 2.6 Consensus size: 49
141258 AACGAGTTTT
* ** * * * *
141268 AATAAAAAATATTTTTTATTCAAACTTTTTATCTCGA-TGTAATAAATTTT
1 AATAAAAAATA-TTTTTATTAAAACTCGTCACCTCGAGT-TAACAAATTTA
* * *
141318 AATAAAAAAACTATATTTTATTACAACTCGTCACCTCGAGTTGACGAATTTA
1 AAT-AAAAAA-TAT-TTTTATTAAAACTCGTCACCTCGAGTTAACAAATTTA
141370 AATAAAAAATATTTTTATTAAAACTCGTCA
1 AATAAAAAATATTTTTATTAAAACTCGTCA
141400 TTTCGACATG
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
49 17 0.25
50 6 0.09
51 13 0.19
52 30 0.45
53 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.39
Consensus pattern (49 bp):
AATAAAAAATATTTTTATTAAAACTCGTCACCTCGAGTTAACAAATTTA
Found at i:142142 original size:197 final size:198
Alignment explanation
Indices: 141827--142240 Score: 668
Period size: 199 Copynumber: 2.1 Consensus size: 198
141817 TTACACATGT
* *
141827 TCAAATCATTCTAACAATAATTTTTTGATTTAATGATATCTAAAACCCTCAAACTTTTGAAAAAA
1 TCAAATCCTTCTAACAATAATTTTTTGATTTAATGATATATAAAACCCTCAAACTTTTGAAAAAA
*
141892 ATATATGATCCCTAAACTTTTTTGCACTCAATGTGATCCTTAAACTAA-TTTTTTAAGAGTTTGA
66 ATATATGATCCCTAAACTTTTTTGCACTCAATGTGATACTTAAACTAATTTTTTTAAGAGTTTGA
* * *
141956 ATATTGATTGTCCAAATTATTATTAGAAAATACACTCAACGTGGTCCTTTTAACAATAATATGGT
131 ATATTGAGTGTCCAAAATATTATTAGAAAATACACTCAACGTGGTCCTTCTAACAATAATATGGT
*
142021 CTC
196 CCC
* *
142024 TCAAATCCTTCTAACAATAATTTTTTTATTTAATGGTATATAAAACCCTCAAACTTTTGAAAAAA
1 TCAAATCCTTCTAACAATAATTTTTTGATTTAATGATATATAAAACCCTCAAACTTTTGAAAAAA
* * * *
142089 ATAATATGATCCCTACACTTTTTTGCACTCAATGTGGTATTTAAACTATTTTTTTTAAGAGTTTG
66 AT-ATATGATCCCTAAACTTTTTTGCACTCAATGTGATACTTAAACTAATTTTTTTAAGAGTTTG
* * *
142154 AATATTGAGTGTCCAAAATATTGTTAGAAAATACTCTCAATGTGGTCCTTCTAACAATAATATGG
130 AATATTGAGTGTCCAAAATATTATTAGAAAATACACTCAACGTGGTCCTTCTAACAATAATATGG
142219 TCCC
195 TCCC
142223 TCAAATCCTTCTAACAAT
1 TCAAATCCTTCTAACAAT
142241 TTCTAGAAAT
Statistics
Matches: 199, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
197 63 0.32
198 41 0.21
199 95 0.48
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (198 bp):
TCAAATCCTTCTAACAATAATTTTTTGATTTAATGATATATAAAACCCTCAAACTTTTGAAAAAA
ATATATGATCCCTAAACTTTTTTGCACTCAATGTGATACTTAAACTAATTTTTTTAAGAGTTTGA
ATATTGAGTGTCCAAAATATTATTAGAAAATACACTCAACGTGGTCCTTCTAACAATAATATGGT
CCC
Found at i:144251 original size:12 final size:12
Alignment explanation
Indices: 144236--144260 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
144226 ATATATATAA
144236 ATATAATTTTTT
1 ATATAATTTTTT
144248 ATATAATTTTTT
1 ATATAATTTTTT
144260 A
1 A
144261 ACTTTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATATAATTTTTT
Found at i:144253 original size:18 final size:17
Alignment explanation
Indices: 144202--144240 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
144192 TTGAATTTAT
144202 AATAT-TTATATGAT-TA
1 AATATATTATAT-ATATA
144218 AATATATTATATATATA
1 AATATATTATATATATA
144235 AATATA
1 AATATA
144241 ATTTTTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
AATATATTATATATATA
Found at i:148812 original size:2 final size:2
Alignment explanation
Indices: 148807--148831 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
148797 TTTTTTATTT
148807 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
148832 GTTTTAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:149237 original size:16 final size:17
Alignment explanation
Indices: 149212--149246 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
149202 TTATCTCACC
*
149212 TTTTATTTTTATTTGTT
1 TTTTATTTTTATTTATT
149229 TTTTA-TTTTATTTATT
1 TTTTATTTTTATTTATT
149245 TT
1 TT
149247 CCTTTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:153347 original size:95 final size:94
Alignment explanation
Indices: 153159--153340 Score: 258
Period size: 95 Copynumber: 1.9 Consensus size: 94
153149 ATATTATTTA
* * *
153159 TATACAATAAAGCTTGAGTTGTCCCTCTAGCATAATTGTTTAAACGCCCCGGCTTTATGGATAAT
1 TATACAATAAAGCCTGAGTTGTCCCTCTAGCA-AATTGGTTAAACGCCCCGGCTTTATGGATAAG
*
153224 ATTCAGCTAGCCTGATAAAGGTGATTATAC
65 ATTCAGCTAACCTGATAAAGGTGATTATAC
* ** *
153254 TATACAATAAAGCCTGAGTTGTCTCTCTAAGGC-AATTGGTTAAACGCCTTGGTTTTATGGATAA
1 TATACAATAAAGCCTGAGTTGTCCCTCT-A-GCAAATTGGTTAAACGCCCCGGCTTTATGGATAA
153318 GATTCAGCTAACCTGATAAAGGT
64 GATTCAGCTAACCTGATAAAGGT
153341 ATTTATATAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
95 74 0.96
96 1 0.01
97 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (94 bp):
TATACAATAAAGCCTGAGTTGTCCCTCTAGCAAATTGGTTAAACGCCCCGGCTTTATGGATAAGA
TTCAGCTAACCTGATAAAGGTGATTATAC
Found at i:154906 original size:110 final size:110
Alignment explanation
Indices: 154708--154910 Score: 316
Period size: 110 Copynumber: 1.8 Consensus size: 110
154698 GCTTCCCAAT
*
154708 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGCTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAACACAAGCTCAACTTCA
** *
154773 CAACGAAGGGGCGGTTGATTGTCAACAAACAAATTTTTAGTTTCA
66 CAACGAAGGGGCGACTGACTGTCAACAAACAAATTTTTAGTTTCA
* * ** *
154818 TTCAGAGTCAATTTTAACTTCACAGTGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCA
1 TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAACACAAGCTCAACTTCA
*
154883 CAGCGAAGGGGCGACTGACTGTCAACAA
66 CAACGAAGGGGCGACTGACTGTCAACAA
154911 GCAATTTCCC
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
110 83 1.00
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (110 bp):
TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAACACAAGCTCAACTTCA
CAACGAAGGGGCGACTGACTGTCAACAAACAAATTTTTAGTTTCA
Found at i:157037 original size:19 final size:19
Alignment explanation
Indices: 157013--157055 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
157003 CAGTGCGAGG
157013 TGGAACATCCGTC-GGTTTC
1 TGGAACATCC-TCTGGTTTC
157032 TGGAACATCCTCTGGTTTC
1 TGGAACATCCTCTGGTTTC
157051 TGGAA
1 TGGAA
157056 AATACGACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.33
Consensus pattern (19 bp):
TGGAACATCCTCTGGTTTC
Found at i:157424 original size:29 final size:29
Alignment explanation
Indices: 157347--157424 Score: 74
Period size: 29 Copynumber: 2.8 Consensus size: 29
157337 TTGTCACCCA
*
157347 TTTTCATT-TTTATTCATTT-TAATCCGT
1 TTTTCATTATTTATTTATTTATAATCCGT
* * *
157374 TATTC-TTATTATATATAATTATAATCC-T
1 TTTTCATTATT-TATTTATTTATAATCCGT
157402 TTTTCATTTATTTATTTATTTAT
1 TTTTCA-TTATTTATTTATTTAT
157425 TATATATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
26 2 0.05
27 6 0.15
28 11 0.28
29 15 0.38
30 5 0.13
ACGTcount: A:0.26, C:0.10, G:0.01, T:0.63
Consensus pattern (29 bp):
TTTTCATTATTTATTTATTTATAATCCGT
Found at i:157588 original size:2 final size:2
Alignment explanation
Indices: 157583--157641 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
157573 TTCATAGCAT
157583 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
157625 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
157642 TTACTATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:157674 original size:24 final size:24
Alignment explanation
Indices: 157646--157704 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
157636 ATATATTTAC
157646 TATTATCTTTCTTTC-TATT-ATTTT
1 TATTAT-TTTCTTTCAT-TTCATTTT
*
157670 TATTATTTTTTTTCATTTCATTTT
1 TATTATTTTCTTTCATTTCATTTT
157694 TA-T-TTTTCTTT
1 TATTATTTTCTTT
157705 ATCCTTACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 7 0.23
23 10 0.32
24 14 0.45
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (24 bp):
TATTATTTTCTTTCATTTCATTTT
Found at i:157924 original size:16 final size:17
Alignment explanation
Indices: 157899--157933 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
157889 TTATCTCACC
*
157899 TTTTATTTTTATTTGTT
1 TTTTATTTTTATTTATT
157916 TTTTA-TTTTATTTATT
1 TTTTATTTTTATTTATT
157932 TT
1 TT
157934 CCTTTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:158490 original size:19 final size:18
Alignment explanation
Indices: 158449--158492 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
158439 ATTAATATGC
*
158449 ATATAATATAATTTTAAT
1 ATATATTATAATTTTAAT
*
158467 A-ATATTATATTTTTAAT
1 ATATATTATAATTTTAAT
158484 ATTATATTA
1 A-TATATTA
158493 ATATATACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 15 0.68
18 1 0.05
19 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATATATTATAATTTTAAT
Found at i:159454 original size:22 final size:22
Alignment explanation
Indices: 159412--159454 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
159402 AGAATTCTAT
* *
159412 ATTTTCCTAAAATCAAGAAACA
1 ATTTTACTAAAATCAAAAAACA
159434 ATTTTACT-AAATCACAAAAAC
1 ATTTTACTAAAATCA-AAAAAC
159455 CATAGTCCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (22 bp):
ATTTTACTAAAATCAAAAAACA
Found at i:165810 original size:20 final size:20
Alignment explanation
Indices: 165787--165829 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
165777 AATCCACCAC
*
165787 ATGCAACTATATGCTCCTAA
1 ATGCAACTAAATGCTCCTAA
* *
165807 ATGCATCTAAATGGTCCTAA
1 ATGCAACTAAATGCTCCTAA
165827 ATG
1 ATG
165830 GGCTCTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
ATGCAACTAAATGCTCCTAA
Found at i:171674 original size:26 final size:26
Alignment explanation
Indices: 171644--171697 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
171634 TTATAAATAC
171644 AAATGAAGTTAGACATGACGTTGAAG
1 AAATGAAGTTAGACATGACGTTGAAG
*
171670 AAATGAAGTTAGACATGGCGTTGAAG
1 AAATGAAGTTAGACATGACGTTGAAG
171696 AA
1 AA
171698 CCATCATGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.07, G:0.28, T:0.22
Consensus pattern (26 bp):
AAATGAAGTTAGACATGACGTTGAAG
Found at i:176686 original size:5 final size:5
Alignment explanation
Indices: 176670--176759 Score: 78
Period size: 5 Copynumber: 18.2 Consensus size: 5
176660 CATTTCGTTC
*** * *
176670 TATTT T-TTT TATTT TATTT TCATTT TATTT TATTT TAGCA AACTT TATTT
1 TATTT TATTT TATTT TATTT T-ATTT TATTT TATTT TATTT TATTT TATTT
* *
176720 TA-TT AATTT TATTT TATTT TGA-TT AATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT T-ATTT TATTT TATTT TATTT T
176760 TCTCTGAACA
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
4 8 0.12
5 53 0.79
6 6 0.09
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.71
Consensus pattern (5 bp):
TATTT
Found at i:176751 original size:34 final size:34
Alignment explanation
Indices: 176676--176757 Score: 96
Period size: 34 Copynumber: 2.4 Consensus size: 34
176666 GTTCTATTTT
*
176676 TTTTATTTTATTTTCATTTTATTTTATTTTAGCAAA
1 TTTTATTTTA--TTAATTTTATTTTATTTTAGCAAA
*
176712 CTTTATTTTATTAATTTTATTTTATTTT-G-ATTAA
1 TTTTATTTTATTAATTTTATTTTATTTTAGCA--AA
176746 TTTTATTTTATT
1 TTTTATTTTATT
176758 TTTCTCTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
32 1 0.02
33 1 0.02
34 30 0.73
36 9 0.22
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (34 bp):
TTTTATTTTATTAATTTTATTTTATTTTAGCAAA
Found at i:178922 original size:76 final size:72
Alignment explanation
Indices: 178815--179003 Score: 228
Period size: 76 Copynumber: 2.6 Consensus size: 72
178805 ATTTTAAACA
* *
178815 TTATATTTTATCTTTGTTTTAT-GTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTT
1 TTATATTTTATCTTTGTTTT-TGGTATTTTAGTTTAAATAGGTTTTAGTATTTCAATTAAGATTT
178879 AGGATATTATTT
65 A-GA-A-TA-TT
* *
178891 TTATATTTTATCTTTGTTTTTGGTATTTTAGTTTAAATAGGTTTTATTATTTCAATTAGGATTTA
1 TTATATTTTATCTTTGTTTTTGGTATTTTAGTTTAAATAGGTTTTAGTATTTCAATTAAGATTTA
178956 GAATATT
66 GAATATT
* * *
178963 TTAAATATTA---TT-TTTTAGGTATTTTAGTTTAAATA-GTTTTA
1 TTATATTTTATCTTTGTTTTTGGTATTTTAGTTTAAATAGGTTTTA
179004 ATTAGGATTT
Statistics
Matches: 105, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
67 6 0.06
68 22 0.21
69 2 0.02
72 10 0.10
73 2 0.02
74 1 0.01
75 3 0.03
76 59 0.56
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.59
Consensus pattern (72 bp):
TTATATTTTATCTTTGTTTTTGGTATTTTAGTTTAAATAGGTTTTAGTATTTCAATTAAGATTTA
GAATATT
Found at i:179643 original size:17 final size:17
Alignment explanation
Indices: 179618--179651 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
179608 CTTTATCTCA
*
179618 ATTTATTTATTTTATTT
1 ATTTATTTATTTAATTT
*
179635 ATTTGTTTATTTAATTT
1 ATTTATTTATTTAATTT
179652 TTATCTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTATTTATTTAATTT
Found at i:179735 original size:21 final size:21
Alignment explanation
Indices: 179705--179765 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
179695 TCTTTATTAC
*
179705 TATTTTTAATTTTTAATTTAT
1 TATTTATAATTTTTAATTTAT
*
179726 TATTTATAATTTTTTA-TT-T
1 TATTTATAATTTTTAATTTAT
179745 TA-TTATACATTTTTAACTTTA
1 TATTTATA-ATTTTTAA-TTTA
179766 CTTGAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
18 5 0.15
19 10 0.30
20 2 0.06
21 16 0.48
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (21 bp):
TATTTATAATTTTTAATTTAT
Found at i:180677 original size:40 final size:41
Alignment explanation
Indices: 180606--180688 Score: 123
Period size: 40 Copynumber: 2.0 Consensus size: 41
180596 TGAAAGTTTA
180606 TTTATGTTCGTTTATTTATTAAACGAACGAACATAAACAAAAT
1 TTTATGTTCGTTTA--TATTAAACGAACGAACATAAACAAAAT
* *
180649 TTTATGTTCGTTTA-ATTAAATGAACGAACATGAACAAAAT
1 TTTATGTTCGTTTATATTAAACGAACGAACATAAACAAAAT
180689 GCTCGTTCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 24 0.63
43 14 0.37
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (41 bp):
TTTATGTTCGTTTATATTAAACGAACGAACATAAACAAAAT
Found at i:181073 original size:31 final size:31
Alignment explanation
Indices: 181028--181108 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
181018 CCGAACAAAC
*
181028 ATGAACGAAAACGAACAAGCTAAATTTCTTA
1 ATGAACGAACACGAACAAGCTAAATTTCTTA
* * *
181059 ATGAAGGAGCACGAACAAACTAAATTTCTTA
1 ATGAACGAACACGAACAAGCTAAATTTCTTA
*
181090 ATGACCGAACACGAACAAG
1 ATGAACGAACACGAACAAG
181109 AAATTTTGTT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.19
Consensus pattern (31 bp):
ATGAACGAACACGAACAAGCTAAATTTCTTA
Found at i:181513 original size:2 final size:2
Alignment explanation
Indices: 181506--181559 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
181496 AGTTTAACCG
181506 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
181548 AT AT AT AT AT AT
1 AT AT AT AT AT AT
181560 TAGAATTCCT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:182493 original size:35 final size:33
Alignment explanation
Indices: 182454--182521 Score: 118
Period size: 35 Copynumber: 2.0 Consensus size: 33
182444 AAATAAAACG
182454 AATTAAAAATATAATAATAATAATAATAATTTTTT
1 AATTAAAAATATAATAATAA-AA-AATAATTTTTT
182489 AATTAAAAATATAATAATAAAAAATAATTTTTT
1 AATTAAAAATATAATAATAAAAAATAATTTTTT
182522 GAAAAATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 11 0.33
34 2 0.06
35 20 0.61
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (33 bp):
AATTAAAAATATAATAATAAAAAATAATTTTTT
Found at i:184526 original size:21 final size:21
Alignment explanation
Indices: 184500--184542 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
184490 ATGGTGTCAT
*
184500 CCGGAGTTTGATTGGATGACA
1 CCGGAGTTTAATTGGATGACA
184521 CCGGAGTTTAATTGGATGACA
1 CCGGAGTTTAATTGGATGACA
184542 C
1 C
184543 ACGAGCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (21 bp):
CCGGAGTTTAATTGGATGACA
Found at i:185503 original size:14 final size:14
Alignment explanation
Indices: 185484--185516 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
185474 TGGGGAGTAA
*
185484 TCCCTGTAAATAAT
1 TCCCTGCAAATAAT
185498 TCCCTGCAAATAAT
1 TCCCTGCAAATAAT
185512 TCCCT
1 TCCCT
185517 ACATAGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.33
Consensus pattern (14 bp):
TCCCTGCAAATAAT
Found at i:188806 original size:15 final size:16
Alignment explanation
Indices: 188786--188817 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
188776 TCAATTCTAT
188786 ACTGCAATATAA-AAA
1 ACTGCAATATAACAAA
188801 ACTGCAATATAACAAA
1 ACTGCAATATAACAAA
188817 A
1 A
188818 TGAACCAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.59, C:0.16, G:0.06, T:0.19
Consensus pattern (16 bp):
ACTGCAATATAACAAA
Found at i:190405 original size:12 final size:12
Alignment explanation
Indices: 190390--190431 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
190380 TATTTATTTT
*
190390 TATTAAATACTA
1 TATTATATACTA
190402 TATTATATA-TA
1 TATTATATACTA
190413 TATATATATACATA
1 TAT-TATATAC-TA
190427 TATTA
1 TATTA
190432 CCTGGCATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 5 0.19
12 14 0.54
13 2 0.08
14 5 0.19
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (12 bp):
TATTATATACTA
Found at i:190627 original size:4 final size:4
Alignment explanation
Indices: 190620--190645 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
190610 TATTCTTGTT
190620 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
190646 ATATGTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:204249 original size:97 final size:96
Alignment explanation
Indices: 203988--204249 Score: 318
Period size: 95 Copynumber: 2.7 Consensus size: 96
203978 ATATTATAAT
*
203988 ATTATATA-TATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACTCCCCGACTTT
1 ATTATATATTATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACACCCCG-CTTT
* *
204052 ATGGATAAGATTCAGCTAGCCTGATAAAGGTG
65 ATGGATAAGATTCAGCTAACCTGATAAAGATG
* * * * *
204084 ATTATA-A-TGTACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCTCGGCTTT
1 ATTATATATTATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACACC-CCGCTTT
*
204147 ATGGATAATATTCAGCTAACCTGAT-AAGATG
65 ATGGATAAGATTCAGCTAACCTGATAAAGATG
* * * *
204178 ATTATAATATCTATACAATGATGC-TGAGCTATCCCTCTAAAGCATTTGGTTAAACACCCCAGCT
1 ATTAT-ATAT-TATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACACCCC-GCT
*
204242 CTATGGAT
63 TTATGGAT
204250 CCAGCTAGCC
Statistics
Matches: 142, Mismatches: 18, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
94 10 0.07
95 73 0.51
96 10 0.07
97 39 0.27
98 10 0.07
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (96 bp):
ATTATATATTATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACACCCCGCTTTA
TGGATAAGATTCAGCTAACCTGATAAAGATG
Found at i:205484 original size:169 final size:168
Alignment explanation
Indices: 205065--205956 Score: 1079
Period size: 169 Copynumber: 5.3 Consensus size: 168
205055 AAAAGTACCT
* * * *
205065 TCAACAAAAGGCCTTCGAGTTCGATTACACTCAGCTCAAAGGCGCATCAAATTTGCAACATGGCT
1 TCAAC-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC--ATTTGCAGCATAGCT
* * * *
205130 CAAGGTGAGAAGGGCTATCTACCAACAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGTA
63 CAAGGCGAGAAGGGCTATC-GCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCA
* ** * * *
205195 CAT-C-TTTTGTAGCATAGCTCAAGTCGAGAAGGGTTATCTA
127 CATCCAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTG
* * * * ** *
205235 CCAATAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGTATATCATTTATAGCATGGCTCA
1 TCAA-CAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* *
205300 AGGCGAGAAGGGCTATCGACCAACAAAAGACCTTCAAGTTTGATTACACTCAGCTCAAAGGCACA
65 AGGCGAGAAGGGCTATCG-CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACA
205365 TCCAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTG
129 TCCAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTG
* * * *
205405 TCAACCAAGACCTTTGAGTTTGATTACACTCAGCTCAAAGGCACATCATTTGCATCATAGCTCAA
1 TCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
* *
205470 GGCGAAAAGGGCTATCGGCCAACAAAAGACCTTCAAGTTCGATTACACTCAGCTCAAAGGCACAT
66 GGCGAGAAGGGCTATC-GCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT
* *
205535 CCAATTTACAGTATAACTCAAGGTGAGAAGGGTTATCTG
130 CCAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTG
* * *
205574 TCAACCAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGTATAACTCAA
1 TCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
* * *
205639 GGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCAATTACACTCAGCTCAAAGGCACAT
66 GGCGAGAAGGGCTATC-GCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT
* * * * * *
205704 CAAATTTGCAACATAGCTCAAGGTGAGAAGGGCTATCTG
130 CCAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTG
* * * * * *
205743 CCAACAAAAGACCTTCGAGTTCGATTACATTCAACTCAAAGGCATATCAATTTTACAGCATAACT
1 TCAAC-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC-A-TTTGCAGCATAGCT
** * * * * * * *
205808 CAATACGGGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTACATTCATCTCAGAGGCA
63 CAAGGCGAGAAGGGCTATC-GCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCA
*
205872 AATCCAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTG
127 CATCCAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTG
* * * * *
205914 TCAAGAAATACCTTCGAGTTCGATTCCATTCAGCTCAAGGGCA
1 TCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCA
205957 TGTCAACTTT
Statistics
Matches: 635, Mismatches: 79, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
168 75 0.12
169 306 0.48
170 147 0.23
171 72 0.11
172 35 0.06
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (168 bp):
TCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
GGCGAGAAGGGCTATCGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC
CAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTG
Found at i:205733 original size:86 final size:85
Alignment explanation
Indices: 205065--206007 Score: 1067
Period size: 84 Copynumber: 11.1 Consensus size: 85
205055 AAAAGTACCT
* * * * **
205065 TCAACAAAAGGCCTTCGAGTTCGATTACACTCAGCTCAAAGGCGCATCAAATTTGCAACATGGCT
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC-AATTTACAGCATAACT
* * *
205130 CAAGGTGAGAAGGGCTATCTA
65 CAAGGCGAGAAGGGTTATCTG
* * * * ** *
205151 CCAACAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGTACATC-TTTTGTAGCATAGCTC
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAATTTACAGCATAACTC
* *
205215 AAGTCGAGAAGGGTTATCTA
66 AAGGCGAGAAGGGTTATCTG
* * * * * **
205235 CCAATAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGTATATC-ATTTATAGCATGGCTC
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAATTTACAGCATAACTC
*
205299 AAGGCGAGAAGGGCTATC-G
66 AAGGCGAGAAGGGTTATCTG
* * *
205318 ACCAACAAAAGACCTTCAAGTTTGATTACACTCAGCTCAAAGGCACATCCAATTTACAGCATAAC
1 -TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-CAATTTACAGCATAAC
205383 TCAAGGCGAGAAGGGTTATCTG
64 TCAAGGCGAGAAGGGTTATCTG
* * * * * *
205405 TCAAC-CAAGACCTTTGAGTTTGATTACACTCAGCTCAAAGGCACATC-ATTTGCATCATAGCTC
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAATTTACAGCATAACTC
* * *
205468 AAGGCGAAAAGGGCTATCGG
66 AAGGCGAGAAGGGTTATCTG
* * *
205488 CCAACAAAAGACCTTCAAGTTCGATTACACTCAGCTCAAAGGCACATCCAATTTACAGTATAACT
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-CAATTTACAGCATAACT
*
205553 CAAGGTGAGAAGGGTTATCTG
65 CAAGGCGAGAAGGGTTATCTG
* * *
205574 TCAAC-CAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC-ATTTGCAGTATAACTC
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAATTTACAGCATAACTC
205637 AAGGCGAGAAGGGTTATCTG
66 AAGGCGAGAAGGGTTATCTG
* * * *
205657 TCAACAAAAGACCTTCGAGTTCAATTACACTCAGCTCAAAGGCACATCAAATTTGCAACATAGCT
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC-AATTTACAGCATAACT
* *
205722 CAAGGTGAGAAGGGCTATCTG
65 CAAGGCGAGAAGGGTTATCTG
* * * *
205743 CCAACAAAAGACCTTCGAGTTCGATTACATTCAACTCAAAGGCATATCAATTTTACAGCATAACT
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAA-TTTACAGCATAACT
** *
205808 CAATACGGGAAGGGTTATCTG
65 CAAGGCGAGAAGGGTTATCTG
* * * * *
205829 TCAAC-CAAGACCTTCGAGTTCGATTACATTCATCTCAGAGGCAAATCCAATTTACAGCATAACT
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-CAATTTACAGCATAACT
205893 CAAGGCGAGAAGGGTTATCTG
65 CAAGGCGAGAAGGGTTATCTG
* * * * * ** *
205914 TCAA-GAAATACCTTCGAGTTCGATTCCATTCAGCTCAAGGGCATGTCAACTTTACAGTATAACT
1 TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAA-TTTACAGCATAACT
* * ** *
205978 TAAGTCGAGAAAAGATATCTG
65 CAAGGCGAGAAGGGTTATCTG
205999 TCAACAAAA
1 TCAACAAAA
206008 AAACTGTCAA
Statistics
Matches: 741, Mismatches: 101, Indels: 30
0.85 0.12 0.03
Matches are distributed among these distances:
83 73 0.10
84 227 0.31
85 220 0.30
86 220 0.30
87 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (85 bp):
TCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAATTTACAGCATAACTC
AAGGCGAGAAGGGTTATCTG
Found at i:207448 original size:3 final size:3
Alignment explanation
Indices: 207415--207497 Score: 62
Period size: 3 Copynumber: 27.7 Consensus size: 3
207405 TGGTTATAAA
* *
207415 TAT TA- TAT TAT AAT TAT TAC TAT TAT ATAT TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* * * * * *
207459 TAT TAT AAC AAT ATAT TAT AAT AAT TAT TAG TAT TAT TA
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TA
207498 ATATCATGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
2 4 0.06
3 55 0.86
4 5 0.08
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.54
Consensus pattern (3 bp):
TAT
Found at i:207451 original size:30 final size:28
Alignment explanation
Indices: 207408--207495 Score: 92
Period size: 30 Copynumber: 3.1 Consensus size: 28
207398 TTTGTCCTGG
*
207408 TTATAAATATTATATTATAATTATTACTA
1 TTATATATATTATATTATAATTATTA-TA
*
207437 TTATATATTATTATATTATTATTATTATA
1 TTATATA-TATTATATTATAATTATTATA
**
207466 ACA-ATATATTATA--ATAATTATTAGTA
1 TTATATATATTATATTATAATTATTA-TA
207492 TTAT
1 TTAT
207496 TAATATCATG
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
25 9 0.18
26 3 0.06
27 7 0.14
28 3 0.06
29 9 0.18
30 18 0.37
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.53
Consensus pattern (28 bp):
TTATATATATTATATTATAATTATTATA
Found at i:207501 original size:27 final size:27
Alignment explanation
Indices: 207408--207501 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 27
207398 TTTGTCCTGG
207408 TTATAAATATTATATTATAATTATTACTA
1 TTATAAATATTATA--ATAATTATTACTA
* * *
207437 TTATATATTATTAT-ATTATTATTATTA
1 TTATA-AATATTATAATAATTATTACTA
* * *
207464 TAACAATATATTATAATAATTATTAGTA
1 TTATAA-ATATTATAATAATTATTACTA
*
207492 TTATTAATAT
1 TTATAAATAT
207502 CATGTATGTT
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
26 1 0.02
27 24 0.47
28 14 0.27
29 5 0.10
30 7 0.14
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (27 bp):
TTATAAATATTATAATAATTATTACTA
Found at i:215827 original size:9 final size:8
Alignment explanation
Indices: 215813--215923 Score: 61
Period size: 8 Copynumber: 13.5 Consensus size: 8
215803 CTTAAAGATA
215813 AAAAAAAT
1 AAAAAAAT
215821 GAAAAAAA-
1 -AAAAAAAT
215829 ATAAAAAAT
1 A-AAAAAAT
215838 AAAAAAAT
1 AAAAAAAT
*
215846 ---GAAAT
1 AAAAAAAT
*
215851 AGAAAAAT
1 AAAAAAAT
215859 AGAAAAAAT
1 A-AAAAAAT
215868 GGAAAAAAA-
1 --AAAAAAAT
*
215877 AGAAGAAAAA
1 A-AA-AAAAT
*
215887 AAAAGAAAA
1 AAAA-AAAT
*
215896 AAAAAAAA
1 AAAAAAAT
*
215904 AAAAAAAC
1 AAAAAAAT
215912 AAAAAAAT
1 AAAAAAAT
215920 AAAA
1 AAAA
215924 GGGGGTTCAA
Statistics
Matches: 85, Mismatches: 5, Indels: 25
0.74 0.04 0.22
Matches are distributed among these distances:
5 4 0.05
7 2 0.02
8 43 0.51
9 28 0.33
10 7 0.08
11 1 0.01
ACGTcount: A:0.84, C:0.01, G:0.08, T:0.07
Consensus pattern (8 bp):
AAAAAAAT
Found at i:215834 original size:6 final size:7
Alignment explanation
Indices: 215824--215923 Score: 53
Period size: 7 Copynumber: 13.6 Consensus size: 7
215814 AAAAAATGAA
215824 AAAAAAT
1 AAAAAAT
215831 AAAAAAT
1 AAAAAAT
215838 AAAAAA-
1 AAAAAAT
**
215844 ATGAAAT
1 AAAAAAT
215851 AGAAAAAT
1 A-AAAAAT
215859 AGAAAAAAT
1 --AAAAAAT
215868 GGAAAAAA-
1 --AAAAAAT
*
215876 AAGAAGAAA
1 AA-AA-AAT
*
215885 AAAAAAG
1 AAAAAAT
215892 AAAAAA-
1 AAAAAAT
*
215898 AAAAAAA
1 AAAAAAT
*
215905 AAAAAACA
1 AAAAAA-T
215913 AAAAAAT
1 AAAAAAT
215920 AAAA
1 AAAA
215924 GGGGGTTCAA
Statistics
Matches: 77, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
6 12 0.16
7 34 0.44
8 15 0.19
9 15 0.19
10 1 0.01
ACGTcount: A:0.84, C:0.01, G:0.08, T:0.07
Consensus pattern (7 bp):
AAAAAAT
Found at i:215874 original size:1 final size:1
Alignment explanation
Indices: 215870--215923 Score: 63
Period size: 1 Copynumber: 54.0 Consensus size: 1
215860 GAAAAAATGG
* * * * *
215870 AAAAAAAAGAAGAAAAAAAAAGAAAAAAAAAAAAAAAAAAACAAAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
215924 GGGGGTTCAA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.91, C:0.02, G:0.06, T:0.02
Consensus pattern (1 bp):
A
Found at i:217279 original size:55 final size:55
Alignment explanation
Indices: 217195--217585 Score: 565
Period size: 55 Copynumber: 7.2 Consensus size: 55
217185 TGAAGCAAAA
*
217195 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
217250 GAAGATTATTCTAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
217305 GAAGATT-GTGGA-TCTTATACTCTCTGAAGAAATAGGGGGGCAGATGCGATCGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATA-GGGGGCAGACGCGATCGTT
* * * *
217359 GAAGATTATTCGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGACACGATTGAT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
217414 AAAGATT-GTGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
217467 GAAGATTGTTCGAGTCTTATACTCTCTGAATAAATAGGGGGCAGACGCGATTGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* *
217522 GAAGATTGTTCGCGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
217577 GGAGATTAT
1 GAAGATTAT
217586 GTTCGAGTTC
Statistics
Matches: 297, Mismatches: 34, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
53 65 0.22
54 31 0.10
55 180 0.61
56 21 0.07
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (55 bp):
GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
Found at i:217399 original size:109 final size:109
Alignment explanation
Indices: 217195--217585 Score: 635
Period size: 109 Copynumber: 3.6 Consensus size: 109
217185 TGAAGCAAAA
*
217195 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
1 GAAGATTGTTGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
*
217260 CTAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
65 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
*
217305 GAAGATTG-TGGATCTTATACTCTCTGAAGAAATAGGGGGGCAGATGCGATCGTTGAAGATTATT
1 GAAGATTGTTGGATCTTATACTCTCTGAAGAAATA-GGGGGCAGACGCGATCGTTGAAGATTATT
* *
217369 CGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGACACGATTGAT
65 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
* *
217414 AAAGATTG-TGGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTTC
1 GAAGATTGTTGGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATTC
* *
217478 GAGTCTTATACTCTCTGAATAAATAGGGGGCAGACGCGATTGTT
66 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
*
217522 GAAGATTGTTCGCG-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGGAGATTAT
1 GAAGATTGTT-G-GATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTAT
217586 GTTCGAGTTC
Statistics
Matches: 262, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
108 97 0.37
109 107 0.41
110 57 0.22
111 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (109 bp):
GAAGATTGTTGGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATTC
GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
Found at i:217699 original size:103 final size:104
Alignment explanation
Indices: 217579--218182 Score: 902
Period size: 103 Copynumber: 5.8 Consensus size: 104
217569 CGATCGTTGG
217579 AGATTA-TGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCG
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCG
* *
217643 AGTTCTAGTCCCTGGAGAAAATTGGGCATTCTCGTAGGA
66 AGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
217682 AGATTATTG-TCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTA-GAAGATTATTGTTCG
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCG
* * *
217745 AGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGA
66 AGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
217784 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTTTTATTCG
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCG
217849 AGTTCTAGTCCCTGAAGAAAATT-GGCAGTCTCGTAGGA
66 AGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
217887 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCG
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCG
217952 AGTTCTAGTCCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
66 AGTTCTAGT-CCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* * **
217992 AGATTATTGTTTCGAGTTCTAGTCCCTAAAGAAAATTGGACA-ATATCGTAGGAAGATTATTGTT
1 AGATTATTG-TTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGA-CCCGTAGGAAGATTATTGTT
218056 CGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
64 CGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* * * * **
218097 AGATTATCGTTCGAGTTCTACTCCCTG-AG-AAATAGGAGC-GAACCCGTA-AAAGAAGATTGTT
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGG-GCAG-ACCCGTAGGAAGATTATTGTT
*
218158 CGAGTTCTATACTCCCTGAAGAAAA
64 CGAGTTC--TAGTCCCTGAAGAAAA
218183 AGAGAGCGAA
Statistics
Matches: 458, Mismatches: 31, Indels: 23
0.89 0.06 0.04
Matches are distributed among these distances:
102 81 0.18
103 171 0.37
104 84 0.18
105 63 0.14
106 59 0.13
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (104 bp):
AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGAAGATTATTGTTCG
AGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
Found at i:217716 original size:51 final size:52
Alignment explanation
Indices: 217579--218128 Score: 876
Period size: 52 Copynumber: 10.6 Consensus size: 52
217569 CGATCGTTGG
* *
217579 AGATTA-TGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
217630 AGATTATTGTTCGAGTTCTAGTCCCTGGAGAAAATTGGGCATTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
217682 AGATTATTG-TCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTA-GA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* * *
217732 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
217784 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
217836 AGATTTTTATTCGAGTTCTAGTCCCTGAAGAAAATT-GGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
217887 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
217939 AGATTATTGTTCGAGTTCTAGTCCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGT-CCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* * * *
217992 AGATTATTGTTTCGAGTTCTAGTCCCTAAAGAAAATTGGACAATATCGTAGGA
1 AGATTATTG-TTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
218045 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
218097 AGATTATCGTTCGAGTTCTACTCCCTG-AGAAA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAA
218129 TAGGAGCGAA
Statistics
Matches: 463, Mismatches: 30, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
50 11 0.02
51 131 0.28
52 236 0.51
53 72 0.16
54 13 0.03
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (52 bp):
AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
Found at i:218392 original size:14 final size:14
Alignment explanation
Indices: 218373--218447 Score: 77
Period size: 14 Copynumber: 5.5 Consensus size: 14
218363 TTTGTCCTGG
*
218373 TTATAAATATTATA
1 TTATAATTATTATA
218387 TTATAATTATTACTA
1 TTATAATTATTA-TA
218402 TTAT-ATTA-T-TA
1 TTATAATTATTATA
218413 TTAT-ATTATTATTA
1 TTATAATTATTA-TA
**
218427 TTATAACAATTATA
1 TTATAATTATTATA
218441 TTATAAT
1 TTATAAT
218448 ACTTATTAGT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
11 10 0.19
12 1 0.02
13 1 0.02
14 29 0.56
15 11 0.21
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATAATTATTATA
Done.