Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008981.1 Hibiscus syriacus cultivar Beakdansim tig00112343_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1473337
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
File 1 of 7
Found at i:3591 original size:7 final size:7
Alignment explanation
Indices: 9--3578 Score: 6169
Period size: 7 Copynumber: 518.6 Consensus size: 7
1 CCTGAAAC
9 ACCCTGA
1 ACCCTGA
16 ACCCTGAA
1 ACCCTG-A
24 ACCCTGA
1 ACCCTGA
31 ACCCTGA
1 ACCCTGA
*
38 ACCCTAA
1 ACCCTGA
45 ACCCTGA
1 ACCCTGA
52 ACCCTGA
1 ACCCTGA
59 ACCCT-A
1 ACCCTGA
65 ACCCT-A
1 ACCCTGA
71 ACCCTGA
1 ACCCTGA
78 ACCCTGA
1 ACCCTGA
85 ACCCTGTGA
1 ACCC--TGA
94 A-CCT-A
1 ACCCTGA
99 ACCCTGAA
1 ACCCTG-A
107 ACCCTGAA
1 ACCCTG-A
115 ACCCTGA
1 ACCCTGA
122 A-CCTGA
1 ACCCTGA
128 ACCCTGA
1 ACCCTGA
135 ACCCTGA
1 ACCCTGA
142 ACCCTGA
1 ACCCTGA
149 ACCCTGA
1 ACCCTGA
*
156 ACCC-AA
1 ACCCTGA
162 ACCCTGA
1 ACCCTGA
169 ACCCTGA
1 ACCCTGA
176 ACCCTGA
1 ACCCTGA
183 ACCCTGA
1 ACCCTGA
190 ACCCTGA
1 ACCCTGA
197 ACCCTG-
1 ACCCTGA
203 ACCCTGA
1 ACCCTGA
210 A-CCTGAA
1 ACCCTG-A
217 ACCCTGA
1 ACCCTGA
224 ACCCTGA
1 ACCCTGA
231 ACCCTGA
1 ACCCTGA
238 A-CCTGA
1 ACCCTGA
244 ACCCTGA
1 ACCCTGA
251 ACCCTGA
1 ACCCTGA
*
258 A-CATGA
1 ACCCTGA
*
264 ACCCCGAAA
1 ACCCTG--A
273 ACCCTGA
1 ACCCTGA
280 ACCCTGA
1 ACCCTGA
287 ACCCTGA
1 ACCCTGA
294 ACCCCTGA
1 A-CCCTGA
302 ACCCTGA
1 ACCCTGA
309 ACCCTGA
1 ACCCTGA
316 A-CCTGA
1 ACCCTGA
322 A-CCTGA
1 ACCCTGA
328 ACCCTGA
1 ACCCTGA
335 ACCCTGA
1 ACCCTGA
342 ACCCTGA
1 ACCCTGA
*
349 A-ACTGAA
1 ACCCTG-A
356 ACCCTGA
1 ACCCTGA
363 ACCCTGA
1 ACCCTGA
370 A-CCTGA
1 ACCCTGA
376 ACCCTGA
1 ACCCTGA
383 A-CCTGA
1 ACCCTGA
389 ACCCTGA
1 ACCCTGA
396 ACCCTGA
1 ACCCTGA
403 ACCCTGA
1 ACCCTGA
410 ACCCTGA
1 ACCCTGA
*
417 AACCTGAA
1 ACCCTG-A
425 ACCCTGA
1 ACCCTGA
432 ACCCTGAA
1 ACCCTG-A
440 ACCCTGA
1 ACCCTGA
*
447 ACCATGA
1 ACCCTGA
454 ACCCTGA
1 ACCCTGA
461 ACCCTGA
1 ACCCTGA
468 ACCCTGA
1 ACCCTGA
475 ACCCTGA
1 ACCCTGA
482 ACCCT-A
1 ACCCTGA
488 A-CCTGA
1 ACCCTGA
494 ACCCTGA
1 ACCCTGA
501 ACCCTGAA
1 ACCCTG-A
509 ACCCTGA
1 ACCCTGA
516 ACCCTGA
1 ACCCTGA
523 A-CCTGA
1 ACCCTGA
529 ACCCTGA
1 ACCCTGA
536 ACCCTGA
1 ACCCTGA
543 ACCCTGA
1 ACCCTGA
550 ACCCTGA
1 ACCCTGA
557 ACCCTGA
1 ACCCTGA
564 ACCCTGA
1 ACCCTGA
571 ACCCT-A
1 ACCCTGA
577 ACCCTGA
1 ACCCTGA
584 ACCCTGA
1 ACCCTGA
**
591 A-CCAAA
1 ACCCTGA
597 ACCCTGA
1 ACCCTGA
604 ACCCTGA
1 ACCCTGA
611 ACCCTGA
1 ACCCTGA
618 ACCCTGA
1 ACCCTGA
625 ACCCTGA
1 ACCCTGA
632 ACCCTGA
1 ACCCTGA
639 ACCCTGA
1 ACCCTGA
646 ACCCTGA
1 ACCCTGA
653 ACCCTGA
1 ACCCTGA
660 ACCCTGA
1 ACCCTGA
667 ACCCTGA
1 ACCCTGA
674 ACCCTGA
1 ACCCTGA
681 A-CCTGA
1 ACCCTGA
687 ACCC-GA
1 ACCCTGA
693 ACCCTGA
1 ACCCTGA
700 ACCCTGA
1 ACCCTGA
707 ACCCTGA
1 ACCCTGA
714 ACCCTGA
1 ACCCTGA
721 A-CC-GA
1 ACCCTGA
726 ACCCTGA
1 ACCCTGA
733 ACCCTGA
1 ACCCTGA
740 ACCCTGA
1 ACCCTGA
747 ACCCTGA
1 ACCCTGA
754 ACCCTGA
1 ACCCTGA
761 ACCCTGA
1 ACCCTGA
768 ACCCTGA
1 ACCCTGA
775 ACCCTG-
1 ACCCTGA
781 ACCCTGA
1 ACCCTGA
788 ACCCTGA
1 ACCCTGA
795 ACCCTGA
1 ACCCTGA
802 A-CC-GA
1 ACCCTGA
807 ACCCTGA
1 ACCCTGA
814 ACCCTGA
1 ACCCTGA
821 ACCCTGA
1 ACCCTGA
828 ACCCTGA
1 ACCCTGA
835 ACCCTGA
1 ACCCTGA
842 ACCCTGA
1 ACCCTGA
849 ACCCTGA
1 ACCCTGA
856 ACCCTGA
1 ACCCTGA
863 ACCCTGA
1 ACCCTGA
870 ACCCTGA
1 ACCCTGA
877 ACCCTGA
1 ACCCTGA
884 ACCCTGA
1 ACCCTGA
891 ACCCTG-
1 ACCCTGA
897 A-CCTGA
1 ACCCTGA
903 A-CCTGA
1 ACCCTGA
909 ACCCTGA
1 ACCCTGA
916 ACCCTGA
1 ACCCTGA
923 A-CCTGA
1 ACCCTGA
929 ACCCTGA
1 ACCCTGA
936 ACCCTGA
1 ACCCTGA
943 ACCCTGA
1 ACCCTGA
950 ACCCTGA
1 ACCCTGA
957 ACCCTGA
1 ACCCTGA
964 ACCCTGA
1 ACCCTGA
971 A-CCTGA
1 ACCCTGA
977 ACCCTGA
1 ACCCTGA
984 A-CCTGA
1 ACCCTGA
990 ACCCTGA
1 ACCCTGA
997 ACCCTGA
1 ACCCTGA
1004 ACCCTGA
1 ACCCTGA
1011 ACCCTGA
1 ACCCTGA
1018 A-CCTGA
1 ACCCTGA
1024 A-CCTGA
1 ACCCTGA
1030 ACCCTGA
1 ACCCTGA
1037 ACCCTGA
1 ACCCTGA
1044 ACCC-GA
1 ACCCTGA
1050 ACCCTGA
1 ACCCTGA
1057 ACCCTGA
1 ACCCTGA
1064 ACCCTGA
1 ACCCTGA
1071 A--CTGA
1 ACCCTGA
1076 ACCCTGA
1 ACCCTGA
1083 ACCCTGA
1 ACCCTGA
1090 ACCCTGA
1 ACCCTGA
1097 A-CCTG-
1 ACCCTGA
1102 ACCCTGA
1 ACCCTGA
1109 ACCCTGA
1 ACCCTGA
1116 ACCCTGA
1 ACCCTGA
1123 ACCCTGA
1 ACCCTGA
1130 ACCCTGA
1 ACCCTGA
1137 ACCCTGA
1 ACCCTGA
1144 ACCCTGA
1 ACCCTGA
1151 ACCCTGA
1 ACCCTGA
1158 A-CCTGA
1 ACCCTGA
1164 ACCCTGA
1 ACCCTGA
1171 ACCCTGA
1 ACCCTGA
1178 ACCCTGA
1 ACCCTGA
1185 ACCCTGA
1 ACCCTGA
1192 A-CCTGA
1 ACCCTGA
1198 ACCCTGA
1 ACCCTGA
1205 ACCCTGA
1 ACCCTGA
1212 ACCCTGA
1 ACCCTGA
1219 ACCGACCTG-
1 A-C--CCTGA
1228 ACCCTGA
1 ACCCTGA
1235 ACCCTGA
1 ACCCTGA
1242 ACCCTGA
1 ACCCTGA
1249 ACCCTGA
1 ACCCTGA
1256 ACCCTGA
1 ACCCTGA
1263 ACCCTGA
1 ACCCTGA
1270 ACCC-GA
1 ACCCTGA
1276 ACCCTGA
1 ACCCTGA
1283 ACCCTGA
1 ACCCTGA
1290 ACCCTGA
1 ACCCTGA
1297 ACCCTGA
1 ACCCTGA
1304 ACCCTGA
1 ACCCTGA
1311 ACCCTGA
1 ACCCTGA
1318 ACCCTGA
1 ACCCTGA
1325 ACCCTGA
1 ACCCTGA
1332 ACCC-GA
1 ACCCTGA
1338 A-CCTGA
1 ACCCTGA
1344 ACCCTGA
1 ACCCTGA
1351 ACCCTGA
1 ACCCTGA
1358 ACCCTGA
1 ACCCTGA
1365 ACCCTGA
1 ACCCTGA
1372 ACCC-GA
1 ACCCTGA
1378 ACCCTGA
1 ACCCTGA
1385 ACCC-GA
1 ACCCTGA
1391 ACCCTGA
1 ACCCTGA
1398 ACCCTG-
1 ACCCTGA
1404 ACCCTGA
1 ACCCTGA
1411 ACCCTGA
1 ACCCTGA
1418 A-CCTGA
1 ACCCTGA
1424 ACCCTGA
1 ACCCTGA
1431 ACCCTGA
1 ACCCTGA
1438 ACCCTG-
1 ACCCTGA
1444 ACCCTGA
1 ACCCTGA
1451 ACCCTGA
1 ACCCTGA
1458 ACCCTGA
1 ACCCTGA
1465 ACCCTGA
1 ACCCTGA
1472 ACCCTGA
1 ACCCTGA
1479 ACCCTGA
1 ACCCTGA
1486 ACCCTGA
1 ACCCTGA
1493 ACCCTGA
1 ACCCTGA
1500 ACCCTGA
1 ACCCTGA
1507 ACCCTGA
1 ACCCTGA
1514 ACCCTGA
1 ACCCTGA
1521 ACCCTGA
1 ACCCTGA
1528 A--CTGA
1 ACCCTGA
1533 ACCCTGA
1 ACCCTGA
1540 ACCCTGA
1 ACCCTGA
1547 ACCCTGA
1 ACCCTGA
1554 ACCCTGA
1 ACCCTGA
1561 ACCCTGA
1 ACCCTGA
1568 A-CCTGA
1 ACCCTGA
1574 A-CCTGA
1 ACCCTGA
1580 ACCCTGAA
1 ACCCTG-A
1588 ACCC-GA
1 ACCCTGA
1594 ACCCTG-
1 ACCCTGA
1600 ACCCTGA
1 ACCCTGA
1607 ACCCTGA
1 ACCCTGA
1614 ACCCTGA
1 ACCCTGA
1621 ACCCTGA
1 ACCCTGA
1628 A-CCTGA
1 ACCCTGA
1634 A-CCTGA
1 ACCCTGA
1640 ACCCTGA
1 ACCCTGA
1647 ACCCTGA
1 ACCCTGA
1654 A-CCTGA
1 ACCCTGA
1660 ACCCTGA
1 ACCCTGA
1667 ACCCTGA
1 ACCCTGA
1674 ACCCTGA
1 ACCCTGA
1681 ACCCTGA
1 ACCCTGA
1688 ACCCTGA
1 ACCCTGA
1695 ACCCTGA
1 ACCCTGA
1702 ACCCTGA
1 ACCCTGA
1709 ACCCTGA
1 ACCCTGA
1716 ACCCTGA
1 ACCCTGA
1723 ACCCTGA
1 ACCCTGA
1730 ACCCTGA
1 ACCCTGA
1737 A-CCTGA
1 ACCCTGA
1743 A-CCTGA
1 ACCCTGA
1749 ACCCTGA
1 ACCCTGA
1756 ACCCTGA
1 ACCCTGA
1763 ACCCTGA
1 ACCCTGA
1770 ACCCTGA
1 ACCCTGA
1777 A-CCTGA
1 ACCCTGA
1783 ACCCTGA
1 ACCCTGA
1790 ACCCTGA
1 ACCCTGA
1797 ACCCTGA
1 ACCCTGA
1804 ACCCTGA
1 ACCCTGA
1811 ACCCTGA
1 ACCCTGA
1818 ACCCTGA
1 ACCCTGA
1825 ACCCTGA
1 ACCCTGA
1832 ACCCTGA
1 ACCCTGA
1839 ACCCTGA
1 ACCCTGA
1846 ACCCTGA
1 ACCCTGA
1853 ACCCTGA
1 ACCCTGA
1860 ACCCTGA
1 ACCCTGA
1867 ACCCTGA
1 ACCCTGA
1874 ACCCTGA
1 ACCCTGA
1881 ACCCTGA
1 ACCCTGA
1888 ACCCTGA
1 ACCCTGA
1895 ACCCTGA
1 ACCCTGA
1902 ACCCTGA
1 ACCCTGA
1909 ACCCTGA
1 ACCCTGA
1916 ACCCTGA
1 ACCCTGA
1923 ACCCTGA
1 ACCCTGA
1930 ACCCTGA
1 ACCCTGA
1937 A-CCTGA
1 ACCCTGA
1943 ACCCTGA
1 ACCCTGA
1950 ACCCTGA
1 ACCCTGA
1957 ACCCTGA
1 ACCCTGA
1964 ACCCTGA
1 ACCCTGA
1971 ACCCTGA
1 ACCCTGA
1978 ACCCTGA
1 ACCCTGA
1985 ACCCTGA
1 ACCCTGA
1992 ACCCTGA
1 ACCCTGA
1999 ACCCTGA
1 ACCCTGA
2006 ACCCTGA
1 ACCCTGA
2013 ACCCTGA
1 ACCCTGA
2020 ACCCTGA
1 ACCCTGA
2027 ACCCTGA
1 ACCCTGA
2034 A-CCTGA
1 ACCCTGA
2040 ACCCTGA
1 ACCCTGA
2047 ACCCTGA
1 ACCCTGA
2054 ACCCTGA
1 ACCCTGA
2061 A-CCTGA
1 ACCCTGA
2067 ACCCTGA
1 ACCCTGA
2074 ACCCTGA
1 ACCCTGA
2081 ACCCTGA
1 ACCCTGA
2088 ACCCTGA
1 ACCCTGA
2095 ACCCTGA
1 ACCCTGA
2102 ACCCTGA
1 ACCCTGA
2109 ACCCTGA
1 ACCCTGA
2116 A-CCTGA
1 ACCCTGA
2122 A-CCTGA
1 ACCCTGA
2128 A-CCTGA
1 ACCCTGA
2134 ACCCTGA
1 ACCCTGA
2141 ACCCTGA
1 ACCCTGA
2148 ACCCTGA
1 ACCCTGA
2155 A-CCTGA
1 ACCCTGA
2161 ACCCTGA
1 ACCCTGA
2168 ACCCTGA
1 ACCCTGA
2175 ACCCTGA
1 ACCCTGA
2182 ACCCTGA
1 ACCCTGA
2189 ACCCTGA
1 ACCCTGA
2196 ACCCTGA
1 ACCCTGA
2203 ACCCTGA
1 ACCCTGA
2210 ACCCTGA
1 ACCCTGA
2217 ACCCTGA
1 ACCCTGA
2224 ACCCTGA
1 ACCCTGA
2231 ACCCTGA
1 ACCCTGA
2238 A-CCTGA
1 ACCCTGA
2244 ACCCTGA
1 ACCCTGA
2251 ACCCTGA
1 ACCCTGA
2258 ACCCTGA
1 ACCCTGA
2265 ACCCTGA
1 ACCCTGA
2272 ACCCTGA
1 ACCCTGA
2279 ACCCTGA
1 ACCCTGA
2286 ACCCTGA
1 ACCCTGA
2293 ACCCTGA
1 ACCCTGA
2300 ACCCTGA
1 ACCCTGA
2307 ACCCTGA
1 ACCCTGA
2314 ACCCTGA
1 ACCCTGA
2321 ACCCTGA
1 ACCCTGA
2328 ACCCTGA
1 ACCCTGA
2335 A-CCTGA
1 ACCCTGA
2341 ACCCTGA
1 ACCCTGA
2348 ACCCTGA
1 ACCCTGA
2355 ACCCTGA
1 ACCCTGA
2362 ACCCTGA
1 ACCCTGA
2369 ACCCTGA
1 ACCCTGA
2376 ACCCTGA
1 ACCCTGA
2383 ACCCTGA
1 ACCCTGA
2390 ACCCTGA
1 ACCCTGA
2397 ACCCTGA
1 ACCCTGA
2404 ACCCTGA
1 ACCCTGA
2411 ACCCTGA
1 ACCCTGA
2418 ACCCTGA
1 ACCCTGA
2425 ACCCTGA
1 ACCCTGA
2432 ACCCTGA
1 ACCCTGA
2439 ACCCTGA
1 ACCCTGA
2446 ACCCTGA
1 ACCCTGA
2453 ACCCTGA
1 ACCCTGA
2460 ACCCTGA
1 ACCCTGA
2467 ACCCTGA
1 ACCCTGA
2474 ACCCTGA
1 ACCCTGA
2481 ACCCTGA
1 ACCCTGA
2488 ACCCTGA
1 ACCCTGA
2495 ACCCTGA
1 ACCCTGA
2502 ACCCTGA
1 ACCCTGA
2509 ACCCTGA
1 ACCCTGA
2516 ACCCTGA
1 ACCCTGA
2523 ACCCTGA
1 ACCCTGA
2530 ACCCTGA
1 ACCCTGA
2537 ACCCTGA
1 ACCCTGA
2544 ACCCTGA
1 ACCCTGA
2551 ACCCTGA
1 ACCCTGA
2558 ACCCTGA
1 ACCCTGA
2565 ACCCTGA
1 ACCCTGA
2572 ACCCTGA
1 ACCCTGA
2579 ACCCTGA
1 ACCCTGA
2586 ACCCTGA
1 ACCCTGA
2593 ACCCTGA
1 ACCCTGA
2600 ACCCTGA
1 ACCCTGA
2607 ACCCTGA
1 ACCCTGA
2614 ACCCTGA
1 ACCCTGA
2621 ACCCTGA
1 ACCCTGA
2628 ACCCTGA
1 ACCCTGA
2635 ACCCTGA
1 ACCCTGA
2642 ACCCTGA
1 ACCCTGA
2649 ACCCTGA
1 ACCCTGA
2656 ACCCTGA
1 ACCCTGA
2663 ACCCTGA
1 ACCCTGA
2670 ACCCTGA
1 ACCCTGA
2677 ACCCTGA
1 ACCCTGA
2684 ACCCTGA
1 ACCCTGA
2691 ACCCTGA
1 ACCCTGA
2698 ACCCTGA
1 ACCCTGA
2705 ACCCTGA
1 ACCCTGA
2712 ACCCTGA
1 ACCCTGA
2719 ACCCTGA
1 ACCCTGA
2726 ACCCTGA
1 ACCCTGA
2733 ACCCTGA
1 ACCCTGA
2740 ACCCTGA
1 ACCCTGA
2747 ACCCTGA
1 ACCCTGA
2754 ACCCTGA
1 ACCCTGA
2761 ACCCTGA
1 ACCCTGA
2768 ACCCTGA
1 ACCCTGA
2775 ACCCTGA
1 ACCCTGA
2782 ACCCTGA
1 ACCCTGA
2789 ACCCTGA
1 ACCCTGA
2796 ACCCTGA
1 ACCCTGA
2803 ACCCTGA
1 ACCCTGA
2810 ACCCTGA
1 ACCCTGA
2817 ACCCTGA
1 ACCCTGA
2824 ACCCTGA
1 ACCCTGA
2831 ACCCTGA
1 ACCCTGA
2838 ACCCTGA
1 ACCCTGA
2845 ACCCTGA
1 ACCCTGA
2852 ACCCTGA
1 ACCCTGA
2859 ACCCTGA
1 ACCCTGA
2866 A-CCTGA
1 ACCCTGA
2872 ACCCTGA
1 ACCCTGA
2879 ACCCTGA
1 ACCCTGA
2886 ACCCTGA
1 ACCCTGA
2893 ACCCTGA
1 ACCCTGA
2900 ACCCTGA
1 ACCCTGA
2907 ACCCTGA
1 ACCCTGA
2914 ACCCTGA
1 ACCCTGA
2921 ACCCTGA
1 ACCCTGA
2928 ACCCTGA
1 ACCCTGA
2935 ACCCTGA
1 ACCCTGA
2942 ACCCTGA
1 ACCCTGA
2949 ACCCTGA
1 ACCCTGA
2956 ACCCTGA
1 ACCCTGA
2963 ACCCTGA
1 ACCCTGA
2970 ACCCTGA
1 ACCCTGA
2977 ACCCTGA
1 ACCCTGA
2984 ACCCTGA
1 ACCCTGA
2991 ACCCTGA
1 ACCCTGA
2998 ACCCTGA
1 ACCCTGA
3005 ACCCTGA
1 ACCCTGA
3012 ACCCTGA
1 ACCCTGA
3019 ACCCTGA
1 ACCCTGA
3026 A-CCTGA
1 ACCCTGA
3032 ACCCTGA
1 ACCCTGA
3039 ACCCTGA
1 ACCCTGA
3046 ACCCTGA
1 ACCCTGA
3053 ACCCTGA
1 ACCCTGA
3060 ACCCTGA
1 ACCCTGA
3067 ACCCTGA
1 ACCCTGA
3074 ACCCTGA
1 ACCCTGA
3081 ACCCTGA
1 ACCCTGA
3088 ACCCTGA
1 ACCCTGA
3095 ACCCTGA
1 ACCCTGA
3102 ACCCTGA
1 ACCCTGA
3109 ACCCTGA
1 ACCCTGA
3116 ACCCTGA
1 ACCCTGA
3123 ACCCTGA
1 ACCCTGA
3130 ACCCTGA
1 ACCCTGA
3137 ACCCTGA
1 ACCCTGA
3144 ACCCTGA
1 ACCCTGA
3151 ACCCTGA
1 ACCCTGA
3158 ACCCTGA
1 ACCCTGA
3165 ACCCTGA
1 ACCCTGA
3172 ACCCTGA
1 ACCCTGA
3179 ACCCTGA
1 ACCCTGA
3186 ACCCTGA
1 ACCCTGA
3193 ACCCTGA
1 ACCCTGA
3200 ACCCTGA
1 ACCCTGA
3207 ACCCTGA
1 ACCCTGA
3214 ACCCTGA
1 ACCCTGA
3221 ACCCTGA
1 ACCCTGA
3228 ACCCTGA
1 ACCCTGA
3235 ACCCTGA
1 ACCCTGA
3242 ACCCTGA
1 ACCCTGA
3249 ACCCTGA
1 ACCCTGA
3256 ACCCTGA
1 ACCCTGA
3263 ACCCTGA
1 ACCCTGA
3270 ACCCTGA
1 ACCCTGA
3277 ACCCTGA
1 ACCCTGA
3284 ACCCTGA
1 ACCCTGA
3291 ACCCTGA
1 ACCCTGA
3298 ACCCTGA
1 ACCCTGA
3305 ACCCTG-
1 ACCCTGA
3311 ACCCTGA
1 ACCCTGA
3318 A-CCTGA
1 ACCCTGA
3324 ACCCTGA
1 ACCCTGA
3331 ACCCTGA
1 ACCCTGA
3338 ACCCTGA
1 ACCCTGA
3345 ACCCTGA
1 ACCCTGA
3352 ACCCTGA
1 ACCCTGA
3359 ACCCTGA
1 ACCCTGA
3366 ACCCTGA
1 ACCCTGA
3373 ACCCTGA
1 ACCCTGA
3380 ACCCTGA
1 ACCCTGA
3387 ACCCTGA
1 ACCCTGA
3394 ACCCTGA
1 ACCCTGA
3401 ACCCTGA
1 ACCCTGA
3408 ACCCTGA
1 ACCCTGA
*
3415 ACCCCGA
1 ACCCTGA
*
3422 ACCCCGA
1 ACCCTGA
*
3429 ACCCCGA
1 ACCCTGA
*
3436 ACCCCGA
1 ACCCTGA
*
3443 ACCCCGA
1 ACCCTGA
*
3450 ACCCCGA
1 ACCCTGA
*
3457 ACCCCGA
1 ACCCTGA
*
3464 ACCCCGA
1 ACCCTGA
*
3471 ACCCCGA
1 ACCCTGA
*
3478 ACCCCGA
1 ACCCTGA
*
3485 ACCCCGA
1 ACCCTGA
*
3492 ACCCCGA
1 ACCCTGA
*
3499 ACCCCGA
1 ACCCTGA
*
3506 ACCCCGA
1 ACCCTGA
*
3513 ACCCCGA
1 ACCCTGA
3520 ACCC-GA
1 ACCCTGA
*
3526 ACCCCGA
1 ACCCTGA
*
3533 ACCCCGA
1 ACCCTGA
*
3540 ACCCCGA
1 ACCCTGA
*
3547 ACCCCGA
1 ACCCTGA
*
3554 ACCCCGA
1 ACCCTGA
*
3561 ACCCCGA
1 ACCCTGA
*
3568 ACCCCGA
1 ACCCTGA
3575 ACCC
1 ACCC
3579 CCCCGAACCC
Statistics
Matches: 3460, Mismatches: 19, Indels: 168
0.95 0.01 0.05
Matches are distributed among these distances:
5 28 0.01
6 374 0.11
7 2978 0.86
8 65 0.02
9 11 0.00
10 4 0.00
ACGTcount: A:0.29, C:0.43, G:0.14, T:0.14
Consensus pattern (7 bp):
ACCCTGA
Found at i:3615 original size:7 final size:7
Alignment explanation
Indices: 3416--4375 Score: 1344
Period size: 7 Copynumber: 138.1 Consensus size: 7
3406 GAACCCTGAA
*
3416 CCCCGAA
1 CCCCGAG
*
3423 CCCCGAA
1 CCCCGAG
*
3430 CCCCGAA
1 CCCCGAG
*
3437 CCCCGAA
1 CCCCGAG
*
3444 CCCCGAA
1 CCCCGAG
*
3451 CCCCGAA
1 CCCCGAG
*
3458 CCCCGAA
1 CCCCGAG
*
3465 CCCCGAA
1 CCCCGAG
*
3472 CCCCGAA
1 CCCCGAG
*
3479 CCCCGAA
1 CCCCGAG
*
3486 CCCCGAA
1 CCCCGAG
*
3493 CCCCGAA
1 CCCCGAG
*
3500 CCCCGAA
1 CCCCGAG
*
3507 CCCCGAA
1 CCCCGAG
3514 CCCCGA-
1 CCCCGAG
* *
3520 ACCCGAA
1 CCCCGAG
*
3527 CCCCGAA
1 CCCCGAG
*
3534 CCCCGAA
1 CCCCGAG
*
3541 CCCCGAA
1 CCCCGAG
*
3548 CCCCGAA
1 CCCCGAG
*
3555 CCCCGAA
1 CCCCGAG
*
3562 CCCCGAA
1 CCCCGAG
*
3569 CCCCGAACCC
1 CCCCG-A--G
*
3579 CCCCGAA
1 CCCCGAG
3586 CCCCGA-
1 CCCCGAG
3592 CCCCGA-
1 CCCCGAG
*
3598 CCCCGAA
1 CCCCGAG
3605 CCCCGAG
1 CCCCGAG
3612 CCCCGAG
1 CCCCGAG
3619 CCCCCCCGAG
1 ---CCCCGAG
3629 CCCCGAG
1 CCCCGAG
3636 CCCCGAG
1 CCCCGAG
3643 CCCCGAG
1 CCCCGAG
3650 CCCCGAG
1 CCCCGAG
3657 CCCCGAG
1 CCCCGAG
3664 CCCCGAG
1 CCCCGAG
3671 CCCCGAG
1 CCCCGAG
3678 CCCCGAG
1 CCCCGAG
3685 CCCCGAG
1 CCCCGAG
3692 CCCCGAG
1 CCCCGAG
3699 CCCCGAG
1 CCCCGAG
3706 CCCCGAG
1 CCCCGAG
3713 CCCCGAG
1 CCCCGAG
3720 CCCCGAG
1 CCCCGAG
3727 CCCCGAG
1 CCCCGAG
3734 CCCCGAG
1 CCCCGAG
3741 CCCCGAG
1 CCCCGAG
3748 -CCCGAG
1 CCCCGAG
3754 CCCCGAG
1 CCCCGAG
3761 CCCCGAG
1 CCCCGAG
3768 CCCCGAG
1 CCCCGAG
3775 CCCCGAG
1 CCCCGAG
3782 CCCCGAG
1 CCCCGAG
3789 CCCCGAG
1 CCCCGAG
3796 -CCCGAG
1 CCCCGAG
3802 CCCCGAG
1 CCCCGAG
3809 CCCCGAG
1 CCCCGAG
3816 CCCCGAG
1 CCCCGAG
3823 CCCCGAG
1 CCCCGAG
3830 CCCCGAG
1 CCCCGAG
3837 CCCCGAG
1 CCCCGAG
3844 CCCCGAG
1 CCCCGAG
3851 CCCCGAG
1 CCCCGAG
3858 CCCCGAG
1 CCCCGAG
3865 CCCCGAG
1 CCCCGAG
3872 CCCCGAG
1 CCCCGAG
3879 CCCCGAG
1 CCCCGAG
3886 CCCCGAG
1 CCCCGAG
3893 CCCCGAG
1 CCCCGAG
3900 -CCCGAG
1 CCCCGAG
3906 CCCCGAG
1 CCCCGAG
3913 CCCCGAG
1 CCCCGAG
3920 CCCCGAG
1 CCCCGAG
3927 CCCCGAG
1 CCCCGAG
3934 CCCCGAG
1 CCCCGAG
3941 CCCCGAG
1 CCCCGAG
3948 CCCCGAG
1 CCCCGAG
3955 CCCCGAG
1 CCCCGAG
3962 CCCCGAG
1 CCCCGAG
3969 CCCCGAG
1 CCCCGAG
3976 CCCCGAG
1 CCCCGAG
3983 CCCCGAG
1 CCCCGAG
3990 CCCCGAG
1 CCCCGAG
3997 CCCCGAG
1 CCCCGAG
4004 CCCCGAG
1 CCCCGAG
4011 CCCCGAG
1 CCCCGAG
4018 CCCCGAG
1 CCCCGAG
4025 CCCCGAG
1 CCCCGAG
4032 CCCCGAG
1 CCCCGAG
4039 CCCCGAG
1 CCCCGAG
4046 CCCCGAG
1 CCCCGAG
4053 CCCCGAG
1 CCCCGAG
4060 CCCCGAG
1 CCCCGAG
4067 CCCCGAG
1 CCCCGAG
4074 CCCCGAG
1 CCCCGAG
4081 CCCCGAG
1 CCCCGAG
4088 CCCCGAG
1 CCCCGAG
4095 CCCCGAG
1 CCCCGAG
4102 CCCCGAG
1 CCCCGAG
4109 CCCCGAG
1 CCCCGAG
4116 -CCCGAG
1 CCCCGAG
4122 CCCCGAG
1 CCCCGAG
4129 -CCCGAG
1 CCCCGAG
4135 CCCCGAG
1 CCCCGAG
4142 CCCCGAG
1 CCCCGAG
4149 CCCCGAG
1 CCCCGAG
4156 CCCCGAG
1 CCCCGAG
4163 CCCCGAG
1 CCCCGAG
4170 CCCCGAG
1 CCCCGAG
4177 CCCCCGAG
1 -CCCCGAG
4185 CCCCGAG
1 CCCCGAG
4192 CCCCGAG
1 CCCCGAG
4199 CCCCGAG
1 CCCCGAG
4206 -CCCGAG
1 CCCCGAG
4212 CCCCGAG
1 CCCCGAG
4219 CCCCGAG
1 CCCCGAG
4226 CCCCGAG
1 CCCCGAG
4233 CCCCGAG
1 CCCCGAG
4240 CCCCGAG
1 CCCCGAG
4247 CCCCGA-
1 CCCCGAG
*
4253 CCCCGAC
1 CCCCGAG
4260 CCCCGA-
1 CCCCGAG
4266 CCCC-AG
1 CCCCGAG
4272 ACCCC-AG
1 -CCCCGAG
* * *
4279 ACCAGAA
1 CCCCGAG
4286 CCCC-AG
1 CCCCGAG
* *
4292 ACCCAGAA
1 -CCCCGAG
*
4300 CCCTGA-
1 CCCCGAG
4306 CCCCTGA-
1 CCCC-GAG
4313 CCCC-AG
1 CCCCGAG
*
4319 ACCCCGAA
1 -CCCCGAG
*
4327 CCCCGAA
1 CCCCGAG
4334 CCCC-AG
1 CCCCGAG
* *
4340 ACCCGAA
1 CCCCGAG
*
4347 CCCCGAA
1 CCCCGAG
*
4354 CCCCGAA
1 CCCCGAG
*
4361 CCCCGAA
1 CCCCGAG
4368 CCCCGAG
1 CCCCGAG
4375 C
1 C
4376 AATCCTTATA
Statistics
Matches: 906, Mismatches: 21, Indels: 52
0.93 0.02 0.05
Matches are distributed among these distances:
5 2 0.00
6 73 0.08
7 808 0.89
8 10 0.01
9 1 0.00
10 12 0.01
ACGTcount: A:0.19, C:0.57, G:0.24, T:0.00
Consensus pattern (7 bp):
CCCCGAG
Found at i:4408 original size:19 final size:19
Alignment explanation
Indices: 4384--4449 Score: 96
Period size: 19 Copynumber: 3.5 Consensus size: 19
4374 GCAATCCTTA
*
4384 TAAACCCTAGTATACCTAG
1 TAAACCCTAGTACACCTAG
* *
4403 TAAACCCTGGAACACCTAG
1 TAAACCCTAGTACACCTAG
*
4422 TAAACCCTAGTACACCTAA
1 TAAACCCTAGTACACCTAG
4441 TAAACCCTA
1 TAAACCCTA
4450 ATATACCCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.39, C:0.30, G:0.09, T:0.21
Consensus pattern (19 bp):
TAAACCCTAGTACACCTAG
Found at i:4432 original size:10 final size:10
Alignment explanation
Indices: 4384--4479 Score: 74
Period size: 10 Copynumber: 9.9 Consensus size: 10
4374 GCAATCCTTA
4384 TAAACCCTAG
1 TAAACCCTAG
*
4394 TATA-CCTAG
1 TAAACCCTAG
4403 TAAACCCT-G
1 TAAACCCTAG
*
4412 -GAACACCTAG
1 TAAAC-CCTAG
4422 TAAACCCTAG
1 TAAACCCTAG
* *
4432 TACA-CCTAA
1 TAAACCCTAG
*
4441 TAAACCCTAA
1 TAAACCCTAG
*
4451 TATACCCTAG
1 TAAACCCTAG
* * *
4461 TATATCCTAA
1 TAAACCCTAG
4471 TAAACCCTA
1 TAAACCCTA
4480 ACCCCAAAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
8 3 0.04
9 19 0.28
10 43 0.63
11 3 0.04
ACGTcount: A:0.40, C:0.29, G:0.07, T:0.24
Consensus pattern (10 bp):
TAAACCCTAG
Found at i:8380 original size:3 final size:3
Alignment explanation
Indices: 8372--8498 Score: 181
Period size: 3 Copynumber: 43.7 Consensus size: 3
8362 TTAATATATT
*
8372 TAA TAA TAA AAA TAA TAA TAA TAA TAA -AA -AA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
8418 TAT TAA TAA TGA TAA TAA TAA TAT TAA TAA TAA TAA TAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
8465 TAA TGA TAA TAA TAA TAA TAA TAA TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8499 TGGATAAAAA
Statistics
Matches: 111, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
2 8 0.07
3 103 0.93
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9134 original size:119 final size:119
Alignment explanation
Indices: 8740--9426 Score: 1200
Period size: 119 Copynumber: 5.9 Consensus size: 119
8730 GCTCTTGATG
*
8740 AGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACT-T
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
* * *** *
8801 TAC-CTGGTAATGTTGATCCATCAA-ATGATGAATTCAAGCAAAAGGTTGAACA
66 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
* *
8853 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTGTGAACTCT
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
*
8918 TCCTCTGG-AACGATGATCCATCAATTTGATG-ATTCAAGCAAAAGGTTGAACA
66 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
8970 A-TTCTTCTCATTATGAA---CTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
9031 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
9085 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
9150 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
9204 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
9269 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
9323 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
9388 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAA
66 TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAA
9427 ATCTTTGCTA
Statistics
Matches: 553, Mismatches: 9, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
113 88 0.16
114 22 0.04
115 22 0.04
116 52 0.09
117 39 0.07
118 9 0.02
119 321 0.58
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (119 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
TCCTCTGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
Found at i:10151 original size:52 final size:52
Alignment explanation
Indices: 10051--10410 Score: 650
Period size: 52 Copynumber: 6.9 Consensus size: 52
10041 CTATCCAATT
* *
10051 AGATCAGATATCTCAAAGAACAACTTCCAGAAGATGTTATGTTCTGTCCAACC
1 AGATCAGATAACTCAAAGAAC-ACTTCCAGAAGATGCTATGTTCTGTCCAACC
10104 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACC
1 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACC
*
10156 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTATGAT-CAACC
1 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTG-TCCAACC
10208 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACC
1 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACC
*
10260 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATGTTCTGTCCAACC
1 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACC
*
10312 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTATCCAACC
1 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACC
10364 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTC
1 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTC
10411 GCTTTTCCAT
Statistics
Matches: 297, Mismatches: 8, Indels: 5
0.96 0.03 0.02
Matches are distributed among these distances:
51 1 0.00
52 275 0.93
53 21 0.07
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.24
Consensus pattern (52 bp):
AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACC
Found at i:11406 original size:9 final size:9
Alignment explanation
Indices: 11392--11475 Score: 70
Period size: 9 Copynumber: 9.6 Consensus size: 9
11382 TTTTTCCTTT
11392 TTCTTTTTC
1 TTCTTTTTC
*
11401 TTCTTTTCC
1 TTCTTTTTC
11410 TT-TTTTTC
1 TTCTTTTTC
11418 TT-TTTTTC
1 TTCTTTTTC
*
11426 TTTTCTTTCTC
1 --TTCTTTTTC
11437 TTCTTTTTC
1 TTCTTTTTC
*
11446 TT-TTCTTTT
1 TTCTT-TTTC
11455 TTCTTTTT-
1 TTCTTTTTC
*
11463 TT-TTTTCC
1 TTCTTTTTC
11471 TTCTT
1 TTCTT
11476 CAAGCATAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
7 4 0.06
8 19 0.31
9 30 0.48
10 4 0.06
11 5 0.08
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
TTCTTTTTC
Found at i:11418 original size:36 final size:33
Alignment explanation
Indices: 11378--11475 Score: 99
Period size: 36 Copynumber: 2.8 Consensus size: 33
11368 CTTGACCCCC
*
11378 TTTCTTTTTCCTTTTTCTTTTTCTTCTTTTCCTTTT
1 TTTCTTTTT-CTTTTTCTTTTTCTTCTTTT--TTCT
* *
11414 TTTCTTTTTTTCTTTTCTTTCTCTTC-TTTTTCT
1 TTTCTTTTTCT-TTTTCTTTTTCTTCTTTTTTCT
*
11447 TTTCTTTTTTCTTTTTTTTTTTCCTTCTT
1 TTTC-TTTTTCTTTTTCTTTTT-CTTCTT
11476 CAAGCATAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
33 15 0.29
34 10 0.19
35 5 0.10
36 22 0.42
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (33 bp):
TTTCTTTTTCTTTTTCTTTTTCTTCTTTTTTCT
Found at i:11421 original size:6 final size:6
Alignment explanation
Indices: 11378--11469 Score: 66
Period size: 6 Copynumber: 14.7 Consensus size: 6
11368 CTTGACCCCC
*
11378 TTTCTT TTTCCTT TTTCTT TTTCTTCT TTTCCTT TTT-TT CTT-TT TTTC-T
1 TTTCTT TTT-CTT TTTCTT TTTC-T-T TTT-CTT TTTCTT TTTCTT TTTCTT
*
11427 TTTCTTT CTCTTCTT TTTC-T TTTCTTT TTTCTT TTTTTT TTTC
1 TTTC-TT -T-TTCTT TTTCTT TTTC-TT TTTCTT TTTCTT TTTC
11470 CTTCTTCAAG
Statistics
Matches: 71, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
5 18 0.25
6 23 0.32
7 18 0.25
8 8 0.11
9 4 0.06
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTCTT
Found at i:11446 original size:45 final size:39
Alignment explanation
Indices: 11382--11474 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 39
11372 ACCCCCTTTC
*
11382 TTTTTCCTTTTTCTT-TTTCTTCTTTTCCTTTTTTTCTTTTTT
1 TTTTTCC-TTCTCTTCTTT-TTCTTTT-C-TTTTTTCTTTTTT
*
11424 TCTTTTCTTTCTCTTCTTTTTCTTTTCTTTTTTCTTTTTT
1 T-TTTTCCTTCTCTTCTTTTTCTTTTCTTTTTTCTTTTTT
11464 TTTTTCCTTCT
1 TTTTTCCTTCT
11475 TCAAGCATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
39 9 0.20
40 14 0.30
41 1 0.02
42 14 0.30
43 8 0.17
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (39 bp):
TTTTTCCTTCTCTTCTTTTTCTTTTCTTTTTTCTTTTTT
Found at i:11461 original size:5 final size:5
Alignment explanation
Indices: 11390--11454 Score: 59
Period size: 5 Copynumber: 13.8 Consensus size: 5
11380 TCTTTTTCCT
* *
11390 TTTTC TTTT- TCTTC TTTTC CTTT- TTTTC -TTT- TTTTC TTTTC -TTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
*
11435 TCTTC TTTTTC TTTTC TTTT
1 TTTTC -TTTTC TTTTC TTTT
11455 TTCTTTTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
4 16 0.33
5 28 0.58
6 4 0.08
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:24259 original size:3 final size:3
Alignment explanation
Indices: 24251--24382 Score: 180
Period size: 3 Copynumber: 44.7 Consensus size: 3
24241 TTAATATATT
24251 TAA TAA TAA -AA TAA TAA TAA TAA TAA -AA -AA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
24296 TTAA TAA TGA TAA TAA TAA TAT TTA TAA TAA TAA TAA TAA TAA TAT
1 -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
24342 TAA TAA TGA TAA TAA TAA TAT TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
24383 TGGATAAAAA
Statistics
Matches: 114, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
2 6 0.05
3 105 0.92
4 3 0.03
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:31821 original size:34 final size:33
Alignment explanation
Indices: 31757--31822 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 33
31747 CTGTAGTTTA
*
31757 ATTTTTTAAATTTAATTACTTAACTTTCAAATTT
1 ATTTTTTAAATTTAATTAC-TAACTATCAAATTT
*
31791 ATTTTTTAATTTTAATTA-TACACTAATCAAAT
1 ATTTTTTAAATTTAATTACTA-ACT-ATCAAAT
31823 ACTAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 2 0.07
33 3 0.11
34 23 0.82
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (33 bp):
ATTTTTTAAATTTAATTACTAACTATCAAATTT
Found at i:32642 original size:38 final size:38
Alignment explanation
Indices: 32563--32637 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 38
32553 CATTAAACCT
*
32563 TTTTATATTTTAAATTTTGTAAAAAAACATTATATAAA
1 TTTTATAATTTAAATTTTGTAAAAAAACATTATATAAA
*
32601 TTTTATGAATTTAAATTTT-TAAAGAAA-A-TATATAAA
1 TTTTAT-AATTTAAATTTTGTAAAAAAACATTATATAAA
32637 T
1 T
32638 ATTTTCCAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 9 0.26
37 1 0.03
38 13 0.38
39 11 0.32
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (38 bp):
TTTTATAATTTAAATTTTGTAAAAAAACATTATATAAA
Found at i:38304 original size:50 final size:50
Alignment explanation
Indices: 38228--38346 Score: 159
Period size: 50 Copynumber: 2.4 Consensus size: 50
38218 ACCCTTTACA
*
38228 GTAAGGCGCGCCACCTATAACGCGCTTTACGTTGATCTGGCA-CCACGTGGG
1 GTAAGGCGCGCC-CCTATAACACGCTTTACGTTGATCTGG-AGCCACGTGGG
* * *
38279 GTAAGACGCGCCCCTATAACACGCTTTATGTTGATCTGGAGTCACGTGGG
1 GTAAGGCGCGCCCCTATAACACGCTTTACGTTGATCTGGAGCCACGTGGG
* *
38329 ATAAGGTGCGCCCCTATA
1 GTAAGGCGCGCCCCTATA
38347 GCGCGTTTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
49 1 0.02
50 48 0.80
51 11 0.18
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (50 bp):
GTAAGGCGCGCCCCTATAACACGCTTTACGTTGATCTGGAGCCACGTGGG
Found at i:38578 original size:23 final size:24
Alignment explanation
Indices: 38548--38594 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
38538 GTTTAAGGTA
38548 TATTTTT-ATTATATTTAA-TATTT
1 TATTTTTAATT-TATTTAAGTATTT
38571 TATTTTTAATTTATTTAAGTATTT
1 TATTTTTAATTTATTTAAGTATTT
38595 AAATTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (24 bp):
TATTTTTAATTTATTTAAGTATTT
Found at i:38601 original size:24 final size:24
Alignment explanation
Indices: 38549--38601 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
38539 TTTAAGGTAT
* *
38549 ATTTTTATTATATTTAATATTTTA
1 ATTTTAATTATATTTAATATTTAA
*
38573 TTTTTAATT-TATTTAAGTATTTAA
1 ATTTTAATTATATTTAA-TATTTAA
38597 ATTTT
1 ATTTT
38602 TTAATATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (24 bp):
ATTTTAATTATATTTAATATTTAA
Found at i:38604 original size:17 final size:17
Alignment explanation
Indices: 38578--38610 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
38568 TTTTATTTTT
38578 AATTTATTTAAGTATTTA
1 AATTTATTTAA-TATTTA
38596 AATTT-TTTAATATTT
1 AATTTATTTAATATTT
38611 TATTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
AATTTATTTAATATTTA
Found at i:38612 original size:17 final size:19
Alignment explanation
Indices: 38571--38612 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
38561 TTTAATATTT
*
38571 TATTTTTAATTTATTTAAG
1 TATTTTAAATTTATTTAAG
38590 TA-TTTAAATTT-TTTAA-
1 TATTTTAAATTTATTTAAG
38606 TATTTTA
1 TATTTTA
38613 TTTAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.10
17 9 0.43
18 8 0.38
19 2 0.10
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTTTAAATTTATTTAAG
Found at i:38612 original size:25 final size:26
Alignment explanation
Indices: 38573--38628 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
38563 TAATATTTTA
* *
38573 TTTTTAATTTATTTAAGTATTTAAAT
1 TTTTTAATATATTTAAGTAATTAAAT
**
38599 TTTTTAATAT-TTTATTTAATTAAAT
1 TTTTTAATATATTTAAGTAATTAAAT
38624 TTTTT
1 TTTTT
38629 TGCAGATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTTTAATATATTTAAGTAATTAAAT
Found at i:40945 original size:33 final size:33
Alignment explanation
Indices: 40908--40991 Score: 100
Period size: 34 Copynumber: 2.5 Consensus size: 33
40898 TAATACTTAC
*
40908 TTTATTTTATTAATTTGGTTGGA-TTTATT-TTAA
1 TTTATTTTGTTAATTT-GTTGGACTTT-TTGTTAA
40941 TTTATTTTGTTAAATTTGTTGGACTTTTTGTTAA
1 TTTATTTTGTT-AATTTGTTGGACTTTTTGTTAA
*
40975 TGTATTTTGGTTAATTT
1 TTTATTTT-GTTAATTT
40992 TGTTTATTAC
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
33 18 0.40
34 24 0.53
35 3 0.07
ACGTcount: A:0.21, C:0.01, G:0.14, T:0.63
Consensus pattern (33 bp):
TTTATTTTGTTAATTTGTTGGACTTTTTGTTAA
Found at i:40957 original size:24 final size:23
Alignment explanation
Indices: 40908--40957 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
40898 TAATACTTAC
**
40908 TTTATTTTATTAATTTGGTTGGA
1 TTTATTTTATTAATTTGGTTAAA
* *
40931 TTTATTTTAATTTATTTTGTTAAA
1 TTTATTTT-ATTAATTTGGTTAAA
40955 TTT
1 TTT
40958 GTTGGACTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (23 bp):
TTTATTTTATTAATTTGGTTAAA
Found at i:41935 original size:64 final size:64
Alignment explanation
Indices: 41856--41988 Score: 151
Period size: 64 Copynumber: 2.1 Consensus size: 64
41846 CGGATCTTGG
* * *
41856 CAGGTCAGGTAAAATCGGATACAGGTCA-ACTCAGGTTGATTTGACACAAGATCCAGATCGGGTT
1 CAGGTCAAGTAAAATCAG-TACAGGTCATACTCAGGTTAATTTGACACAAGATCCAGATCGGGTT
* * * * ** * *
41920 CAGGTCAAGTCAAATCAGTTCGGGTTATTTTTAGGTTAATTTGACACCAGATCCAGATCGGGTT
1 CAGGTCAAGTAAAATCAGTACAGGTCATACTCAGGTTAATTTGACACAAGATCCAGATCGGGTT
41984 CAGGT
1 CAGGT
41989 TAGGTCATTT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
63 6 0.11
64 51 0.89
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (64 bp):
CAGGTCAAGTAAAATCAGTACAGGTCATACTCAGGTTAATTTGACACAAGATCCAGATCGGGTT
Found at i:42725 original size:18 final size:19
Alignment explanation
Indices: 42690--42744 Score: 69
Period size: 18 Copynumber: 2.8 Consensus size: 19
42680 ATATATATAA
42690 TATAAGTTTATA-TATAAAC
1 TATAA-TTTATATTATAAAC
42709 TAT-ATTTATATTATAAAC
1 TATAATTTATATTATAAAC
42727 TATAAATATTATATTATA
1 TAT-AAT-TTATATTATA
42745 TATATAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.19
18 11 0.34
19 3 0.09
20 2 0.06
21 10 0.31
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (19 bp):
TATAATTTATATTATAAAC
Found at i:42790 original size:12 final size:12
Alignment explanation
Indices: 42773--42797 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
42763 AAATAATATA
42773 AACTATATATGT
1 AACTATATATGT
42785 AACTATATATGT
1 AACTATATATGT
42797 A
1 A
42798 TAAACTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
AACTATATATGT
Found at i:42971 original size:19 final size:20
Alignment explanation
Indices: 42947--42990 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
42937 GGGAAATTAT
42947 GAAATTTTGAGAA-TATAGG
1 GAAATTTTGAGAATTATAGG
42966 GAAA--TTGAGAATTTATAGG
1 GAAATTTTGAGAA-TTATAGG
42985 GAAATT
1 GAAATT
42991 GGGAAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
17 7 0.33
19 14 0.67
ACGTcount: A:0.43, C:0.00, G:0.25, T:0.32
Consensus pattern (20 bp):
GAAATTTTGAGAATTATAGG
Found at i:42975 original size:17 final size:18
Alignment explanation
Indices: 42953--42991 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
42943 TTATGAAATT
42953 TTGAGAA-TATAGGGAAA
1 TTGAGAATTATAGGGAAA
42970 TTGAGAATTTATAGGGAAA
1 TTGAGAA-TTATAGGGAAA
42989 TTG
1 TTG
42992 GGAAATTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.35
19 13 0.65
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (18 bp):
TTGAGAATTATAGGGAAA
Found at i:43007 original size:20 final size:19
Alignment explanation
Indices: 42963--43036 Score: 69
Period size: 19 Copynumber: 3.8 Consensus size: 19
42953 TTGAGAATAT
*
42963 AGGGAAATTGAGAATTTAT
1 AGGGAAATTGAGAATTTAG
*
42982 AGGGAAATTGGGAAATTTAG
1 AGGGAAATTGAG-AATTTAG
* * * *
43002 ATGG-AATAGAAAATTTTGG
1 AGGGAAATTGAGAA-TTTAG
43021 AGGGAAATTGAGAATT
1 AGGGAAATTGAGAATT
43037 GAGATTTTAT
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
18 2 0.05
19 24 0.57
20 16 0.38
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (19 bp):
AGGGAAATTGAGAATTTAG
Found at i:43232 original size:4 final size:4
Alignment explanation
Indices: 43223--44988 Score: 3171
Period size: 4 Copynumber: 451.2 Consensus size: 4
43213 TTTAATTTTC
43223 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43271 TGTA TGTA TGTA TGT- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T-GTA
43319 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43367 TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43413 TGTA TGTA TGT- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43460 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
43507 TGTA TGTA TGTA TTTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43555 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43603 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43651 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43698 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
43746 TGTA TGTA GGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
43793 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTC TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
43841 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TTTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43889 TGTA TGTA TGTA TG-A TGTA TGTA TGTA TG-A TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
43935 TGTA TGTA TGTA TGTA TGTA TG-A TGTA TGTA TGTA TGTC TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
43982 TGTA TGTA --TA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44027 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44074 TGTA -GTA TGTA TGTA T-TA TGTA TGTA TGTA TG-A TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44119 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44167 TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA --TA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
44211 TGTA TGTA TGTA TGTA TGT- TGTA TGTA TGTA GGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44258 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44306 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44354 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44401 TGTA TGTA TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44448 TGTA TGTA -GT- TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44492 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT- TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44539 TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44585 TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44631 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
44679 TGTA TGTA TGTA TGTA TGTA TGTA TTTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44727 TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA --TA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44772 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44820 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44868 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
44916 -GTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TG-A TTTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
44960 TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
44989 ACTATATATG
Statistics
Matches: 1705, Mismatches: 16, Indels: 82
0.95 0.01 0.05
Matches are distributed among these distances:
2 18 0.01
3 63 0.04
4 1620 0.95
5 4 0.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:45434 original size:21 final size:22
Alignment explanation
Indices: 45410--45467 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
45400 AACCCTGAAT
45410 CCTAAATTATAAACCCA-AAAC
1 CCTAAATTATAAACCCATAAAC
*
45431 CCTAAATTTTAAA-CCATAAAC
1 CCTAAATTATAAACCCATAAAC
* **
45452 ACTAAACCATAAACCC
1 CCTAAATTATAAACCC
45468 TAATGTAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 3 0.10
21 25 0.83
22 2 0.07
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (22 bp):
CCTAAATTATAAACCCATAAAC
Found at i:45457 original size:14 final size:14
Alignment explanation
Indices: 45440--45470 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
45430 CCCTAAATTT
45440 TAAACCATAAACAC
1 TAAACCATAAACAC
*
45454 TAAACCATAAACCC
1 TAAACCATAAACAC
45468 TAA
1 TAA
45471 TGTAAATGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.16
Consensus pattern (14 bp):
TAAACCATAAACAC
Found at i:45873 original size:23 final size:24
Alignment explanation
Indices: 45838--45882 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
45828 ATAAACCATG
*
45838 TATAGTATATATAACCTATATATA
1 TATAGTATATATAAACTATATATA
45862 TATA-TATATATAAACTATATA
1 TATAGTATATATAAACTATATA
45883 AAGTATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (24 bp):
TATAGTATATATAAACTATATATA
Found at i:46137 original size:24 final size:23
Alignment explanation
Indices: 46110--46158 Score: 89
Period size: 24 Copynumber: 2.1 Consensus size: 23
46100 TGTATAAACC
46110 ATGTATAGTATATATATACTATAT
1 ATGTATAGTATATATATA-TATAT
46134 ATGTATAGTATATATATATATAT
1 ATGTATAGTATATATATATATAT
46157 AT
1 AT
46159 AATAAACTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.47
Consensus pattern (23 bp):
ATGTATAGTATATATATATATAT
Found at i:46156 original size:296 final size:297
Alignment explanation
Indices: 45604--46173 Score: 839
Period size: 296 Copynumber: 1.9 Consensus size: 297
45594 TTAATACTTA
*
45604 TTCATAACAACAAAATAAATGGGCTATTAATGAAAATTAACCTAACATGCAACTAAAATACTAAT
1 TTCAAAACAACAAAATAAATGGGCTATTAATGAAAATTAACCTAACATGCAACTAAAATACTAAT
* * *
45669 TATGAAAATGAAATTAATATGACATGTATTACTATTTATGAACCATATAATATGCAATGTGACAT
66 TATGAAAATGAAATTAATATGACATATACTACTATTTATGAACCATATAATAAGCAATGTGACAT
*
45734 ACTAATTATTTAATACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATCTTATTAATT
131 ACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATCTTATTAATT
*** * *
45799 TATTAAATAATTTTATATAATATGTATGTATAAACCATGTATAGTATATATAACCTATATATAT-
196 TATTAAATAACCATATATAATATATATATATAAACCATGTATAGTATATATAA-CTATATATATA
*
45863 ATATA-TATATAAACTATATAAAGTATATTACTTATAT
260 ATAAACTATATAAACTATATAAAGTATATTACTTATAT
*
45900 TTCAAAACAACAAAATAAATGGGCTATTAAT-ATGAATTAACCTAACATGCAACTAAAATACTAA
1 TTCAAAACAACAAAATAAATGGGCTATTAATGA-AAATTAACCTAACATGCAACTAAAATACTAA
* *
45964 TTATGCAAATGAAATTAATATGACATATACTACTATTTATGAACTATATAATAAGCAATGTGACA
65 TTATGAAAATGAAATTAATATGACATATACTACTATTTATGAACCATATAATAAGCAATGTGACA
* *
46029 TACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTATATTTAAATAATTTTATATAA
130 TACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATCTTAT-TAA
* * * * *
46094 TATGTATGTATA-AACCATGTATAGTATATATATACTATA-TATGTATAGTATATAT-A-TATAT
194 T-T-TAT-TAAATAACCATATATAATATATATATA-TAAACCATGTATAGTATATATAACTATAT
46155 ATATAATAAACTATATAAA
255 ATATAATAAACTATATAAA
46174 ATAAATTACT
Statistics
Matches: 245, Mismatches: 21, Indels: 14
0.88 0.08 0.05
Matches are distributed among these distances:
295 1 0.00
296 187 0.76
297 8 0.03
298 10 0.04
299 33 0.13
300 6 0.02
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.38
Consensus pattern (297 bp):
TTCAAAACAACAAAATAAATGGGCTATTAATGAAAATTAACCTAACATGCAACTAAAATACTAAT
TATGAAAATGAAATTAATATGACATATACTACTATTTATGAACCATATAATAAGCAATGTGACAT
ACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATCTTATTAATT
TATTAAATAACCATATATAATATATATATATAAACCATGTATAGTATATATAACTATATATATAA
TAAACTATATAAACTATATAAAGTATATTACTTATAT
Found at i:46169 original size:24 final size:24
Alignment explanation
Indices: 46118--46171 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
46108 CCATGTATAG
* * *
46118 TATATATATACTATATATGTATAG
1 TATATATATACTATATATATAAAC
46142 TATATATATA-TATATATAATAAAC
1 TATATATATACTATATAT-ATAAAC
46166 TATATA
1 TATATA
46172 AAATAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
TATATATATACTATATATATAAAC
Found at i:46171 original size:2 final size:2
Alignment explanation
Indices: 46113--46159 Score: 58
Period size: 2 Copynumber: 22.0 Consensus size: 2
46103 ATAAACCATG
*
46113 TA TA GTA TA TA TA TA CTA TA TA TG TA TA GTA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA
46156 TA TA
1 TA TA
46160 ATAAACTATA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
2 34 0.85
3 6 0.15
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (2 bp):
TA
Found at i:46487 original size:23 final size:24
Alignment explanation
Indices: 46460--46509 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
46450 CTATTTTTTC
*
46460 TTTATATAAATTAAACTATA-TAA
1 TTTATATAAATGAAACTATATTAA
46483 TTTATATAAATGAAACTATATTAA
1 TTTATATAAATGAAACTATATTAA
46507 TTT
1 TTT
46510 TCCTTATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (24 bp):
TTTATATAAATGAAACTATATTAA
Found at i:46781 original size:16 final size:16
Alignment explanation
Indices: 46762--46838 Score: 111
Period size: 16 Copynumber: 4.9 Consensus size: 16
46752 CAGATCATTT
46762 ACAGGTCAGGTTAAAA
1 ACAGGTCAGGTTAAAA
*
46778 ACAGGTTAGGTTAAAA
1 ACAGGTCAGGTTAAAA
* *
46794 ACATGTTAGGTTAAAA
1 ACAGGTCAGGTTAAAA
*
46810 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTAAAA
46826 ACAGGTC-GGTTAA
1 ACAGGTCAGGTTAA
46839 TACCTGTTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
15 5 0.09
16 50 0.91
ACGTcount: A:0.40, C:0.10, G:0.26, T:0.23
Consensus pattern (16 bp):
ACAGGTCAGGTTAAAA
Found at i:46948 original size:22 final size:22
Alignment explanation
Indices: 46920--46970 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
46910 TCAATTCAAT
46920 TCGGGTTCAAGTCGTTCTCAGG
1 TCGGGTTCAAGTCGTTCTCAGG
*
46942 TCGGGTTCAGGTCGTTCTCAGG
1 TCGGGTTCAAGTCGTTCTCAGG
46964 TCGGGTT
1 TCGGGTT
46971 TGGATCCACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.10, C:0.22, G:0.35, T:0.33
Consensus pattern (22 bp):
TCGGGTTCAAGTCGTTCTCAGG
Found at i:48266 original size:19 final size:19
Alignment explanation
Indices: 48219--48269 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
48209 TTTGTTGAAG
*
48219 GTGCATCGAAGCATAAGGA
1 GTGCATCGATGCATAAGGA
*
48238 GTACATCGATGCATAAGGA
1 GTGCATCGATGCATAAGGA
48257 GTGCATCGATGCA
1 GTGCATCGATGCA
48270 CTCATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (19 bp):
GTGCATCGATGCATAAGGA
Found at i:55146 original size:17 final size:18
Alignment explanation
Indices: 55124--55158 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
55114 GAATTTGTTG
55124 AAGGA-GCATCGATGCAT
1 AAGGAGGCATCGATGCAT
55141 AAGGAGTGCATCGATGCA
1 AAGGAG-GCATCGATGCA
55159 ATCATTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
19 11 0.69
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (18 bp):
AAGGAGGCATCGATGCAT
Found at i:55807 original size:22 final size:22
Alignment explanation
Indices: 55779--55838 Score: 102
Period size: 22 Copynumber: 2.7 Consensus size: 22
55769 TTCGGGACAT
*
55779 AGTGGTCCTTCAGGACGTATCC
1 AGTGGTCCTTCGGGACGTATCC
*
55801 AGTGGTCATTCGGGACGTATCC
1 AGTGGTCCTTCGGGACGTATCC
55823 AGTGGTCCTTCGGGAC
1 AGTGGTCCTTCGGGAC
55839 AAATACTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.17, C:0.25, G:0.32, T:0.27
Consensus pattern (22 bp):
AGTGGTCCTTCGGGACGTATCC
Found at i:57849 original size:17 final size:17
Alignment explanation
Indices: 57827--57865 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
57817 TGAATCAAAT
57827 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
57844 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
57861 -AATTA
1 TAATTA
57866 ATTGTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Found at i:60793 original size:6 final size:6
Alignment explanation
Indices: 60778--60829 Score: 60
Period size: 5 Copynumber: 9.5 Consensus size: 6
60768 AGAGAGGGAG
*
60778 TTTG-T TTTGAT TTTGAT TTTGA- TTTGAT TCTGAT TTTG-T TTTG-T
1 TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT
60822 TTT-AT TTT
1 TTTGAT TTT
60830 AAGGGAGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 22 0.52
6 20 0.48
ACGTcount: A:0.12, C:0.02, G:0.15, T:0.71
Consensus pattern (6 bp):
TTTGAT
Found at i:60803 original size:17 final size:17
Alignment explanation
Indices: 60778--60829 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 17
60768 AGAGAGGGAG
60778 TTTGTTTTGATTTTGAT
1 TTTGTTTTGATTTTGAT
* *
60795 TTTGATTTGATTCTGAT
1 TTTGTTTTGATTTTGAT
60812 TTTGTTTTG-TTTT-AT
1 TTTGTTTTGATTTTGAT
60827 TTT
1 TTT
60830 AAGGGAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
15 5 0.16
16 3 0.10
17 23 0.74
ACGTcount: A:0.12, C:0.02, G:0.15, T:0.71
Consensus pattern (17 bp):
TTTGTTTTGATTTTGAT
Found at i:70108 original size:39 final size:40
Alignment explanation
Indices: 70020--70112 Score: 118
Period size: 39 Copynumber: 2.4 Consensus size: 40
70010 AACAAAGAAG
*
70020 TCAAATTCGCAACACTGAATTTCAAATTCGCAACTGAATT
1 TCAAATTCGCAACACTGAATTTCAAATTCGCAACCGAATT
* * *
70060 TCAAATTCGCAACTC-GATTTTCGAATTCGCAACACGAATT
1 TCAAATTCGCAACACTGAATTTCAAATTCGCAAC-CGAATT
*
70100 T-AATTTCGCAACA
1 TCAAATTCGCAACA
70113 GGTTTTAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
39 26 0.57
40 20 0.43
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (40 bp):
TCAAATTCGCAACACTGAATTTCAAATTCGCAACCGAATT
Found at i:70112 original size:19 final size:20
Alignment explanation
Indices: 70020--70112 Score: 118
Period size: 19 Copynumber: 4.7 Consensus size: 20
70010 AACAAAGAAG
70020 TCAAATTCGCAACACTGAATT
1 TCAAATTCGCAACAC-GAATT
*
70041 TCAAATTCGCAAC-TGAATT
1 TCAAATTCGCAACACGAATT
* *
70060 TCAAATTCGCAACTCGATTT
1 TCAAATTCGCAACACGAATT
*
70080 TCGAATTCGCAACACGAATT
1 TCAAATTCGCAACACGAATT
*
70100 T-AATTTCGCAACA
1 TCAAATTCGCAACA
70113 GGTTTTAGTT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
19 28 0.44
20 22 0.35
21 13 0.21
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (20 bp):
TCAAATTCGCAACACGAATT
Found at i:73396 original size:18 final size:18
Alignment explanation
Indices: 73362--73397 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
73352 AAGCAAAAGG
**
73362 AAATCAAAATCGTAATCA
1 AAATCAAAATCCCAATCA
73380 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
73398 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.22, G:0.03, T:0.19
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:75291 original size:21 final size:21
Alignment explanation
Indices: 75267--75360 Score: 120
Period size: 21 Copynumber: 4.6 Consensus size: 21
75257 GTGAATCGGG
* *
75267 CTCTTGAACGGTGAGAGGGAC
1 CTCTTGAACGATGAGAGGGGC
*
75288 CTCTTGAACGATGACAGGGGC
1 CTCTTGAACGATGAGAGGGGC
* *
75309 CTCTTGAACGGTG-G-GAGGC
1 CTCTTGAACGATGAGAGGGGC
*
75328 CTCTTGAACGATGAAAGGGGC
1 CTCTTGAACGATGAGAGGGGC
75349 CTCTTGAACGAT
1 CTCTTGAACGAT
75361 ATGAGACATG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
19 16 0.26
21 46 0.74
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.21
Consensus pattern (21 bp):
CTCTTGAACGATGAGAGGGGC
Found at i:75339 original size:40 final size:42
Alignment explanation
Indices: 75267--75358 Score: 152
Period size: 40 Copynumber: 2.2 Consensus size: 42
75257 GTGAATCGGG
*
75267 CTCTTGAACGGTGAGAGGGACCTCTTGAACGATGACAGGGGC
1 CTCTTGAACGGTGAGAGGGACCTCTTGAACGATGAAAGGGGC
*
75309 CTCTTGAACGGTGGGA-GG-CCTCTTGAACGATGAAAGGGGC
1 CTCTTGAACGGTGAGAGGGACCTCTTGAACGATGAAAGGGGC
75349 CTCTTGAACG
1 CTCTTGAACG
75359 ATATGAGACA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 31 0.65
41 2 0.04
42 15 0.31
ACGTcount: A:0.23, C:0.22, G:0.35, T:0.21
Consensus pattern (42 bp):
CTCTTGAACGGTGAGAGGGACCTCTTGAACGATGAAAGGGGC
Found at i:75784 original size:63 final size:64
Alignment explanation
Indices: 75700--75839 Score: 160
Period size: 63 Copynumber: 2.2 Consensus size: 64
75690 GTAAAGTAGA
* * * *
75700 TACCTCACCACATAGCGCACCATTGTCATCACCTAAAACATCC-ACCTCACCACGT-AAAGACCG
1 TACCTCATCACGTAGCACACCATTGTCATCACCTAAAACA-CCAACCTCACCACGTAAAACACCG
* * ** **
75763 TACCTCATCACGTAGCACACCATTGTCTTCACGTAAAGTACCAACCTCATGACGTAAAACACCG
1 TACCTCATCACGTAGCACACCATTGTCATCACCTAAAACACCAACCTCACCACGTAAAACACCG
75827 -ACCTCATCACGTA
1 TACCTCATCACGTA
75840 ACTCCCCTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
62 2 0.03
63 56 0.86
64 7 0.11
ACGTcount: A:0.33, C:0.36, G:0.11, T:0.20
Consensus pattern (64 bp):
TACCTCATCACGTAGCACACCATTGTCATCACCTAAAACACCAACCTCACCACGTAAAACACCG
Found at i:75817 original size:21 final size:21
Alignment explanation
Indices: 75725--75840 Score: 74
Period size: 21 Copynumber: 5.5 Consensus size: 21
75715 CGCACCATTG
*
75725 TCATCACCTAAAACATCC-ACC
1 TCATCACGTAAAACA-CCAACC
* **
75746 TCACCACGTAAAGAC-CGTACC
1 TCATCACGTAAA-ACACCAACC
** ***
75767 TCATCACGTAGCACACCATTG
1 TCATCACGTAAAACACCAACC
* **
75788 TCTTCACGTAAAGTACCAACC
1 TCATCACGTAAAACACCAACC
* *
75809 TCATGACGTAAAACACCGACC
1 TCATCACGTAAAACACCAACC
75830 TCATCACGTAA
1 TCATCACGTAA
75841 CTCCCCTAAC
Statistics
Matches: 67, Mismatches: 25, Indels: 6
0.68 0.26 0.06
Matches are distributed among these distances:
20 3 0.04
21 62 0.93
22 2 0.03
ACGTcount: A:0.34, C:0.35, G:0.10, T:0.20
Consensus pattern (21 bp):
TCATCACGTAAAACACCAACC
Found at i:77434 original size:20 final size:21
Alignment explanation
Indices: 77400--77452 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
77390 TCTGGAACTT
*
77400 AAATTCGTAATGCGAAAATGA
1 AAATTCGTAACGCGAAAATGA
77421 AAATT-GTAACGCGAAAATGA
1 AAATTCGTAACGCGAAAATGA
*
77441 AAA-TCGCAACGC
1 AAATTCGTAACGC
77453 CAAACTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 1 0.03
20 23 0.79
21 5 0.17
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (21 bp):
AAATTCGTAACGCGAAAATGA
Found at i:77892 original size:22 final size:21
Alignment explanation
Indices: 77843--77893 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 21
77833 ATAGACAGAT
*
77843 TTCGTCGGAGATGGGGACGTA
1 TTCGTCGGAGATGGGGACGGA
77864 TTACGTCGGAGATGGGGACGGA
1 TT-CGTCGGAGATGGGGACGGA
77886 TGTCGTCG
1 T-TCGTCG
77894 TAGAGAGTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 2 0.07
22 24 0.89
23 1 0.04
ACGTcount: A:0.18, C:0.16, G:0.43, T:0.24
Consensus pattern (21 bp):
TTCGTCGGAGATGGGGACGGA
Found at i:86799 original size:6 final size:6
Alignment explanation
Indices: 86788--86813 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
86778 ACAAAGGGGA
86788 TGATCC TGATCC TGATCC TGATCC TG
1 TGATCC TGATCC TGATCC TGATCC TG
86814 TGACTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.31, G:0.19, T:0.35
Consensus pattern (6 bp):
TGATCC
Found at i:86825 original size:2 final size:2
Alignment explanation
Indices: 86818--86842 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86808 ATCCTGTGAC
86818 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
86843 CAAATCTCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:89265 original size:20 final size:20
Alignment explanation
Indices: 89240--89330 Score: 63
Period size: 20 Copynumber: 5.0 Consensus size: 20
89230 TAAATTAAAT
* *
89240 ATTAGATAGGATCCGTTTTA
1 ATTAGATAGAATCAGTTTTA
*
89260 ATTAGATAGAATCAGTTTTT
1 ATTAGATAGAATCAGTTTTA
* *
89280 ATT--CT---ATTAG--TT-
1 ATTAGATAGAATCAGTTTTA
* *
89292 ATTAGATAGGATCATTTTTA
1 ATTAGATAGAATCAGTTTTA
89312 ATTAGATAGAATCAGTTTT
1 ATTAGATAGAATCAGTTTT
89331 TTATTCTATT
Statistics
Matches: 53, Mismatches: 10, Indels: 16
0.67 0.13 0.20
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 1 0.02
15 4 0.08
17 3 0.06
18 1 0.02
19 2 0.04
20 37 0.70
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (20 bp):
ATTAGATAGAATCAGTTTTA
Found at i:89317 original size:52 final size:52
Alignment explanation
Indices: 89239--89386 Score: 262
Period size: 53 Copynumber: 2.8 Consensus size: 52
89229 CTAAATTAAA
**
89239 TATTAGATAGGATCCGTTTTAATTAGATAGAATCAGTTTTTATTCTATTAGT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTATTCTATTAGT
89291 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTTATTCTATTAGT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCAG-TTTTTATTCTATTAGT
89344 TATTAGATAGGATCATTTTTAATTAGATAGAATCA-TTTTTATT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTATT
89387 ATGTTGCTAA
Statistics
Matches: 93, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
51 8 0.09
52 34 0.37
53 51 0.55
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (52 bp):
TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTATTCTATTAGT
Found at i:89370 original size:20 final size:20
Alignment explanation
Indices: 89345--89384 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
89335 TCTATTAGTT
*
89345 ATTAGATAGGATCATTTTTA
1 ATTAGATAGAATCATTTTTA
89365 ATTAGATAGAATCATTTTTA
1 ATTAGATAGAATCATTTTTA
89385 TTATGTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (20 bp):
ATTAGATAGAATCATTTTTA
Found at i:92140 original size:39 final size:39
Alignment explanation
Indices: 92097--92258 Score: 252
Period size: 39 Copynumber: 4.2 Consensus size: 39
92087 AGAAAACGAA
*
92097 CAACAATGAAGTATAACCTCAAACACAGATCCAAGACTT
1 CAACAATGAAGTATAACCTCAAATACAGATCCAAGACTT
* * *
92136 CAACAATGAAGTATAACCTCAATTGCAGATCCAAGAATT
1 CAACAATGAAGTATAACCTCAAATACAGATCCAAGACTT
*
92175 CAACAATGAAGTATAGCCTCAAATACAGATCCAAGACTT
1 CAACAATGAAGTATAACCTCAAATACAGATCCAAGACTT
* * *
92214 CAACAATGAAGTATAACCTCAATTGCAGATCTAAGACTT
1 CAACAATGAAGTATAACCTCAAATACAGATCCAAGACTT
92253 CAACAA
1 CAACAA
92259 ATGGGTTTTC
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.44, C:0.23, G:0.12, T:0.21
Consensus pattern (39 bp):
CAACAATGAAGTATAACCTCAAATACAGATCCAAGACTT
Found at i:92226 original size:78 final size:78
Alignment explanation
Indices: 92097--92258 Score: 288
Period size: 78 Copynumber: 2.1 Consensus size: 78
92087 AGAAAACGAA
92097 CAACAATGAAGTATAACCTCAAACACAGATCCAAGACTTCAACAATGAAGTATAACCTCAATTGC
1 CAACAATGAAGTATAACCTCAAACACAGATCCAAGACTTCAACAATGAAGTATAACCTCAATTGC
92162 AGATCCAAGAATT
66 AGATCCAAGAATT
* *
92175 CAACAATGAAGTATAGCCTCAAATACAGATCCAAGACTTCAACAATGAAGTATAACCTCAATTGC
1 CAACAATGAAGTATAACCTCAAACACAGATCCAAGACTTCAACAATGAAGTATAACCTCAATTGC
* *
92240 AGATCTAAGACTT
66 AGATCCAAGAATT
92253 CAACAA
1 CAACAA
92259 ATGGGTTTTC
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.44, C:0.23, G:0.12, T:0.21
Consensus pattern (78 bp):
CAACAATGAAGTATAACCTCAAACACAGATCCAAGACTTCAACAATGAAGTATAACCTCAATTGC
AGATCCAAGAATT
Found at i:94819 original size:3 final size:3
Alignment explanation
Indices: 94811--94836 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
94801 GAATTGGGTT
94811 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
94837 TCAAAGTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:99893 original size:17 final size:17
Alignment explanation
Indices: 99871--99911 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
99861 TCGTCCCTAT
99871 CTTCAGGGGGAGATTTC
1 CTTCAGGGGGAGATTTC
*
99888 CTTCA-GGGGAGATTTT
1 CTTCAGGGGGAGATTTC
99904 CTTCAGGG
1 CTTCAGGG
99912 AAGATAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.17, C:0.17, G:0.34, T:0.32
Consensus pattern (17 bp):
CTTCAGGGGGAGATTTC
Found at i:99898 original size:16 final size:16
Alignment explanation
Indices: 99871--99916 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
99861 TCGTCCCTAT
99871 CTTCAGGGGGAGATTTC
1 CTTCA-GGGGAGATTTC
*
99888 CTTCAGGGGAGATTTT
1 CTTCAGGGGAGATTTC
*
99904 CTTCAGGGAAGAT
1 CTTCAGGGGAGAT
99917 AAAGACAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 22 0.81
17 5 0.19
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.30
Consensus pattern (16 bp):
CTTCAGGGGAGATTTC
Found at i:100009 original size:21 final size:21
Alignment explanation
Indices: 99984--100028 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
99974 CCTGCTTTTG
99984 TTTCTTCCCAAAAGCCTTCTA
1 TTTCTTCCCAAAAGCCTTCTA
* *
100005 TTTCTTCCCAACATCCTTCTA
1 TTTCTTCCCAAAAGCCTTCTA
100026 TTT
1 TTT
100029 TTGACCAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.33, G:0.02, T:0.44
Consensus pattern (21 bp):
TTTCTTCCCAAAAGCCTTCTA
Found at i:100036 original size:21 final size:21
Alignment explanation
Indices: 99984--100037 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
99974 CCTGCTTTTG
* * *
99984 TTTCTTCCCAAAAGCCTTCTA
1 TTTCTTACCAACATCCTTCTA
*
100005 TTTCTTCCCAACATCCTTCTA
1 TTTCTTACCAACATCCTTCTA
100026 TTT-TTGACCAAC
1 TTTCTT-ACCAAC
100038 CACCACCTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.22, C:0.33, G:0.04, T:0.41
Consensus pattern (21 bp):
TTTCTTACCAACATCCTTCTA
Found at i:100432 original size:21 final size:21
Alignment explanation
Indices: 100408--100449 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
100398 ATCAGATTAT
*
100408 CCAGGCGGTACTGATTCCCCC
1 CCAGGCGGTACCGATTCCCCC
*
100429 CCAGGGGGTACCGATTCCCCC
1 CCAGGCGGTACCGATTCCCCC
100450 TGTCTAACGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.43, G:0.26, T:0.17
Consensus pattern (21 bp):
CCAGGCGGTACCGATTCCCCC
Found at i:101751 original size:19 final size:20
Alignment explanation
Indices: 101727--101774 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
101717 AACGATTTTC
*
101727 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATAAAA
* *
101746 TTTTGAAAGCCAAAATAAAA
1 TTTTGAAAACAAAAATAAAA
101766 TTTTGAAAA
1 TTTTGAAAA
101775 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATAAAA
Found at i:103065 original size:21 final size:21
Alignment explanation
Indices: 103041--103082 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
103031 ATCAGATTAT
*
103041 CCAGGCGGTACTGATTCCCCC
1 CCAGGCGGTACCGATTCCCCC
*
103062 CCAGGGGGTACCGATTCCCCC
1 CCAGGCGGTACCGATTCCCCC
103083 TGTCTAACGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.43, G:0.26, T:0.17
Consensus pattern (21 bp):
CCAGGCGGTACCGATTCCCCC
Found at i:104385 original size:19 final size:20
Alignment explanation
Indices: 104361--104408 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
104351 AACGATTTTC
*
104361 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATAAAA
* *
104380 TTTTGAAAGCCAAAATAAAA
1 TTTTGAAAACAAAAATAAAA
104400 TTTTGAAAA
1 TTTTGAAAA
104409 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATAAAA
Found at i:105700 original size:21 final size:21
Alignment explanation
Indices: 105676--105735 Score: 86
Period size: 20 Copynumber: 2.9 Consensus size: 21
105666 CAGATTGTCC
105676 AGGGGGTACCGATTCCCCCCA
1 AGGGGGTACCGATTCCCCCCA
* * *
105697 A-GGGGAACAGATTCCCCCCC
1 AGGGGGTACCGATTCCCCCCA
105717 AGGGGGTACCGATTCCCCC
1 AGGGGGTACCGATTCCCCC
105736 TGTCTAACGG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 17 0.52
21 16 0.48
ACGTcount: A:0.20, C:0.38, G:0.28, T:0.13
Consensus pattern (21 bp):
AGGGGGTACCGATTCCCCCCA
Found at i:105709 original size:20 final size:20
Alignment explanation
Indices: 105686--105735 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
105676 AGGGGGTACC
105686 GATTCCCCCCAAGGGGAACA
1 GATTCCCCCCAAGGGGAACA
* * *
105706 GATTCCCCCCCAGGGGGTACC
1 GATT-CCCCCCAAGGGGAACA
105727 GATTCCCCC
1 GATTCCCCC
105736 TGTCTAACGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.20, C:0.42, G:0.24, T:0.14
Consensus pattern (20 bp):
GATTCCCCCCAAGGGGAACA
Found at i:105909 original size:13 final size:13
Alignment explanation
Indices: 105891--105923 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
105881 AAACACATTC
105891 CAAGCTATAAATA
1 CAAGCTATAAATA
105904 CAAGCTATAAATA
1 CAAGCTATAAATA
105917 CAAGCTA
1 CAAGCTA
105924 AGGACACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.52, C:0.18, G:0.09, T:0.21
Consensus pattern (13 bp):
CAAGCTATAAATA
Found at i:116701 original size:21 final size:22
Alignment explanation
Indices: 116677--116717 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
116667 ATGAAGAATC
116677 ATAAGAGAAT-AAATATAAGTA
1 ATAAGAGAATGAAATATAAGTA
*
116698 ATAAGATAATGAAATATAAG
1 ATAAGAGAATGAAATATAAG
116718 ACTATGTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.15, T:0.24
Consensus pattern (22 bp):
ATAAGAGAATGAAATATAAGTA
Found at i:117326 original size:229 final size:229
Alignment explanation
Indices: 116925--117384 Score: 902
Period size: 229 Copynumber: 2.0 Consensus size: 229
116915 AATGAATATA
116925 TGAAATTGAATTAATTAAATGGATTAAAGTAGTATATAAATAAAATACGATTAAGTGTAATATAT
1 TGAAATTGAATTAATTAAATGGATTAAAGTAGTATATAAATAAAATACGATTAAGTGTAATATAT
116990 ATGTTAGATATACGACATAAGTTATATAATCTAAGGGAATACAAGGAAATAAAGCATAAAGTAGA
66 ATGTTAGATATACGACATAAGTTATATAATCTAAGGGAATACAAGGAAATAAAGCATAAAGTAGA
117055 CGAAATGAGATAAGTTATTATATACCTATATGATATATGTTAGCAGGTAATATGAAAGGATTCAA
131 CGAAATGAGATAAGTTATTATATACCTATATGATATATGTTAGCAGGTAATATGAAAGGATTCAA
117120 GAAACTTATATAAGCTATGTGAAAGTGATCTAGG
196 GAAACTTATATAAGCTATGTGAAAGTGATCTAGG
*
117154 TGAAATTGAATTAATTAAATGGATTAAAGTAGTATATAAATAAAATATGATTAAGTGTAATATAT
1 TGAAATTGAATTAATTAAATGGATTAAAGTAGTATATAAATAAAATACGATTAAGTGTAATATAT
*
117219 ATGTTAGATATACGACATAAGTTATATACTCTAAGGGAATACAAGGAAATAAAGCATAAAGTAGA
66 ATGTTAGATATACGACATAAGTTATATAATCTAAGGGAATACAAGGAAATAAAGCATAAAGTAGA
117284 CGAAATGAGATAAGTTATTATATACCTATATGATATATGTTAGCAGGTAATATGAAAGGATTCAA
131 CGAAATGAGATAAGTTATTATATACCTATATGATATATGTTAGCAGGTAATATGAAAGGATTCAA
117349 GAAACTTATATAAGCTATGTGAAAGTGATCTAGG
196 GAAACTTATATAAGCTATGTGAAAGTGATCTAGG
117383 TG
1 TG
117385 TTTATATGTG
Statistics
Matches: 229, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
229 229 1.00
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.31
Consensus pattern (229 bp):
TGAAATTGAATTAATTAAATGGATTAAAGTAGTATATAAATAAAATACGATTAAGTGTAATATAT
ATGTTAGATATACGACATAAGTTATATAATCTAAGGGAATACAAGGAAATAAAGCATAAAGTAGA
CGAAATGAGATAAGTTATTATATACCTATATGATATATGTTAGCAGGTAATATGAAAGGATTCAA
GAAACTTATATAAGCTATGTGAAAGTGATCTAGG
Found at i:118006 original size:105 final size:104
Alignment explanation
Indices: 117818--118040 Score: 266
Period size: 105 Copynumber: 2.1 Consensus size: 104
117808 GAGTCGAGGG
* *
117818 TCTACGCGGTCCTTCGGGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGCGACACGT
1 TCTACGTGGTCCTTCGGGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGAGACACGT
* * *
117883 ATTTGGTCTTTAGCATATGTATATGATTCTTAAGGAATTT
66 ACTTGATCCTTAGCATATGTATATGATTCTTAAGGAA-TT
* * * * ** * * *
117923 TCTACGTGGTCCTTCGGGACGTATATGTATTCTTTGGAGTATGTATGAGGTCTTTTGAGACACTT
1 TCTACGTGGTCCTTCGGGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGAGACACGT
* * *
117988 ACTTGATCCTTGGTATATGTATATGGTTCTTAAGGAATT
66 ACTTGATCCTTAGCATATGTATATGATTCTTAAGGAATT
* *
118027 TATATGTGGTCCTT
1 TCTACGTGGTCCTT
118041 ATGGATAATC
Statistics
Matches: 99, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
104 14 0.14
105 85 0.86
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (104 bp):
TCTACGTGGTCCTTCGGGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGAGACACGT
ACTTGATCCTTAGCATATGTATATGATTCTTAAGGAATT
Found at i:121701 original size:23 final size:22
Alignment explanation
Indices: 121657--121701 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
121647 AATGTCATGG
*
121657 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
* *
121679 GGGAACTGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
121702 AAAAAATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.31, C:0.31, G:0.27, T:0.11
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:123010 original size:20 final size:20
Alignment explanation
Indices: 122967--123010 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
122957 GCTACGAGCT
* *
122967 TATATGAATATGTGATATGT
1 TATATGAATATGTGATAGGA
122987 TATATGAATATGTGCA-AGGA
1 TATATGAATATGTG-ATAGGA
123007 TATA
1 TATA
123011 AAATATAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (20 bp):
TATATGAATATGTGATAGGA
Found at i:123272 original size:105 final size:105
Alignment explanation
Indices: 123090--123287 Score: 252
Period size: 105 Copynumber: 1.9 Consensus size: 105
123080 TACGCGGTCC
* * *
123090 TTCGGGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGCGACACGTATTTGGTCATTA
1 TTCGGGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGAGACACGTACTTGATCATTA
123155 GCATATGCATATGATTCTTAAGGAATTTTCTACGTGGTGT
66 GCATATGCATATGATTCTTAAGGAATTTTCTACGTGGTGT
* * * * * * * * * *
123195 TTCGGGACGTATATGTATTCTTTGGAGCATGTATGAGGTCTTTTGAGACACTTACTTGATCCTTG
1 TTCGGGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGAGACACGTACTTGATCATTA
* * *
123260 GTATATGTATATGGTTCTTAAGGAATTT
66 GCATATGCATATGATTCTTAAGGAATTT
123288 ATATGTGGTC
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
105 77 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (105 bp):
TTCGGGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGAGACACGTACTTGATCATTA
GCATATGCATATGATTCTTAAGGAATTTTCTACGTGGTGT
Found at i:124687 original size:23 final size:21
Alignment explanation
Indices: 124655--124714 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
124645 TTGGTGCAGA
124655 GGGAATCGATACCCCCCTTGA-AG
1 GGGAATCGATACCCCCC---ACAG
* *
124678 GGGAACCGATTCCCCCCACAG
1 GGGAATCGATACCCCCCACAG
124699 GGGAATCGATACCCCC
1 GGGAATCGATACCCCC
124715 TAGGGGTTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 16 0.50
23 15 0.47
ACGTcount: A:0.25, C:0.37, G:0.25, T:0.13
Consensus pattern (21 bp):
GGGAATCGATACCCCCCACAG
Found at i:126593 original size:17 final size:17
Alignment explanation
Indices: 126567--126604 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
126557 CATTTTGGAT
126567 ATTT-TGGATTGCTTGA
1 ATTTGTGGATTGCTTGA
*
126583 ATTTGTGGATTGTTTGA
1 ATTTGTGGATTGCTTGA
*
126600 CTTTG
1 ATTTG
126605 AATGCTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.16, C:0.05, G:0.26, T:0.53
Consensus pattern (17 bp):
ATTTGTGGATTGCTTGA
Found at i:138735 original size:2 final size:2
Alignment explanation
Indices: 138728--138767 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
138718 ATACTCGATC
138728 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
138768 CATCAAAGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:139738 original size:26 final size:24
Alignment explanation
Indices: 139692--139739 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
139682 CAAGAGCTTT
139692 CATCATTAATCACACTTAAAAGTC
1 CATCATTAATCACACTTAAAAGTC
* *
139716 CATCAATTGATCAGACTCTAAAAG
1 CATC-ATTAATCACACT-TAAAAG
139740 GTACAATGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 10 0.50
26 6 0.30
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (24 bp):
CATCATTAATCACACTTAAAAGTC
Found at i:146429 original size:102 final size:102
Alignment explanation
Indices: 146272--146461 Score: 247
Period size: 102 Copynumber: 1.9 Consensus size: 102
146262 AAATCCTTTT
* * *
146272 AAGTTCAAAGGAAAGACATTCATCTACCAACTTATTCAATCTCAATATCAAAATACCATCGACAC
1 AAGTTCAAAGGAAAGACATTCATCTACCAACTTATTCAACCTAAACATCAAAATACCATCGACAC
146337 AACAG-TCAATTCAGAATCCATATGGCAATATGTAGTC
66 AACAGTTC-ATTCAGAATCCATATGGCAATATGTAGTC
* * * * * ** *
146374 AAGTTCAAGGGGAATACATTCATCTACCAACTTGTTCGACCTAAACATTGAAATACCATCGACAG
1 AAGTTCAAAGGAAAGACATTCATCTACCAACTTATTCAACCTAAACATCAAAATACCATCGACAC
* *
146439 AACAGTTCATTCATAATCTATAT
66 AACAGTTCATTCAGAATCCATAT
146462 AATAATACGT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
102 72 0.97
103 2 0.03
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (102 bp):
AAGTTCAAAGGAAAGACATTCATCTACCAACTTATTCAACCTAAACATCAAAATACCATCGACAC
AACAGTTCATTCAGAATCCATATGGCAATATGTAGTC
Found at i:146478 original size:102 final size:102
Alignment explanation
Indices: 146272--146486 Score: 234
Period size: 102 Copynumber: 2.1 Consensus size: 102
146262 AAATCCTTTT
* * *
146272 AAGTTCAAAGGAAAGACATTCATCTACCAACTTATTCAATCTCAATATCAAAATACCATCGACAC
1 AAGTTCAAAGGAAAGACATTCATCTACCAACTTATTCAACCTAAACATCAAAATACCATCGACAC
** *
146337 AACAGTCAATTCAGAATCCATATGGCAATATGTAGTC
66 AACAGTCAATTCAGAATCCATATAACAATACGTAGTC
* * * * * ** *
146374 AAGTTCAAGGGGAATACATTCATCTACCAACTTGTTCGACCTAAACATTGAAATACCATCGACAG
1 AAGTTCAAAGGAAAGACATTCATCTACCAACTTATTCAACCTAAACATCAAAATACCATCGACAC
* * * **
146439 AACAGTTC-ATTCATAATCTATATAATAATACGTCTTC
66 AACAG-TCAATTCAGAATCCATATAACAATACGTAGTC
*
146476 AAGTTTAAAGG
1 AAGTTCAAAGG
146487 GTTGGTATTC
Statistics
Matches: 91, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
102 89 0.98
103 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (102 bp):
AAGTTCAAAGGAAAGACATTCATCTACCAACTTATTCAACCTAAACATCAAAATACCATCGACAC
AACAGTCAATTCAGAATCCATATAACAATACGTAGTC
Found at i:155191 original size:21 final size:23
Alignment explanation
Indices: 155167--155217 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
155157 ATAGAATCGA
155167 TCCCCCCTTG-A-GGGAACCGAT
1 TCCCCCCTTGAAGGGGAACCGAT
*
155188 TCCCCCTTTGAAGGGGAACCGAT
1 TCCCCCCTTGAAGGGGAACCGAT
155211 TCCCCCC
1 TCCCCCC
155218 ACAGGGGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 9 0.35
22 1 0.04
23 16 0.62
ACGTcount: A:0.18, C:0.41, G:0.22, T:0.20
Consensus pattern (23 bp):
TCCCCCCTTGAAGGGGAACCGAT
Found at i:155225 original size:21 final size:21
Alignment explanation
Indices: 155199--155238 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
155189 CCCCCTTTGA
*
155199 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
155220 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
155239 TGGGGTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:162641 original size:2 final size:2
Alignment explanation
Indices: 162634--162686 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
162624 ATTGTTCCCG
162634 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
162676 TA TA TA TA TA T
1 TA TA TA TA TA T
162687 CTTTAATCCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:164075 original size:109 final size:110
Alignment explanation
Indices: 163879--164223 Score: 521
Period size: 110 Copynumber: 3.1 Consensus size: 110
163869 GTGCCATCTG
* * * *
163879 AAGCTCAACTTCACATCGAAGTGGCGGCTGACTGTCAACAAACAACTTTTGCATTTTCATTCAGA
1 AAGCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTT-CAGTTTCATTCAGA
*
163944 GTCAATTTCAACTTCATAGCGAATGATATTAGACTCGAGACAACA-
65 GTCAATTTCAACTTCACAGCGAATGATATTAGACTCGAGACAACAC
* * ** *
163989 AAGCTCAACTTCACAGCGAAGGGGCGACTGACTGTTAATAAACTGCTTTTTAGTTTCATTCAGAG
1 AAGCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAG
164054 TCAATTTCAACTTCACAGCGAATGATATTAGACTCGAGACAACAC
66 TCAATTTCAACTTCACAGCGAATGATATTAGACTCGAGACAACAC
** * *
164099 AAGCTCAACTTCACAGTAAAGGGGAGACTAACTGTCAACAAACAACTTTTCAGTTTCATTCAGAG
1 AAGCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAG
* * *
164164 TCAATTTCAACTTCACAGTGAAGGATATTGGACTCGAGACAACAC
66 TCAATTTCAACTTCACAGCGAATGATATTAGACTCGAGACAACAC
164209 AAGCTCAACTTCACA
1 AAGCTCAACTTCACA
164224 ACAAAGAGGT
Statistics
Matches: 212, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
109 56 0.26
110 156 0.74
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (110 bp):
AAGCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAG
TCAATTTCAACTTCACAGCGAATGATATTAGACTCGAGACAACAC
Found at i:166265 original size:19 final size:18
Alignment explanation
Indices: 166243--166278 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
166233 TTTTTTGTCT
*
166243 TTATTATCTTTTCATTTTA
1 TTATTATATTTT-ATTTTA
166262 TTATTATATTTTATTTT
1 TTATTATATTTTATTTT
166279 CCAATATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (18 bp):
TTATTATATTTTATTTTA
Found at i:166349 original size:3 final size:3
Alignment explanation
Indices: 166299--166329 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
166289 GTTTCTTTAC
166299 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
166330 TTTTAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:170444 original size:43 final size:43
Alignment explanation
Indices: 170383--170477 Score: 163
Period size: 43 Copynumber: 2.2 Consensus size: 43
170373 CCTCCAACCG
* * *
170383 AACACACCATAATGTGTAGGTTTCCCAGAACCATACACGCACC
1 AACACACCATAATATGTAGGTTCCCCAGAACCATACACCCACC
170426 AACACACCATAATATGTAGGTTCCCCAGAACCATACACCCACC
1 AACACACCATAATATGTAGGTTCCCCAGAACCATACACCCACC
170469 AACACACCA
1 AACACACCA
170478 AGTAAGGCTC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.38, C:0.36, G:0.11, T:0.16
Consensus pattern (43 bp):
AACACACCATAATATGTAGGTTCCCCAGAACCATACACCCACC
Found at i:170646 original size:24 final size:24
Alignment explanation
Indices: 170593--170710 Score: 141
Period size: 24 Copynumber: 5.0 Consensus size: 24
170583 AAACATAATT
* *
170593 CATGTCAAGTATCATAT-AAAATC
1 CATGTCAAGTATCAGATCAGAATC
* * *
170616 CAGGTCAAGTATCAAATTAGAATC
1 CATGTCAAGTATCAGATCAGAATC
* *
170640 CAAGTCAAGTATCAGATCAAAATC
1 CATGTCAAGTATCAGATCAGAATC
*
170664 CATG-CCAGATATCAGATCAGAATC
1 CATGTCAAG-TATCAGATCAGAATC
170688 CATGTCAAGTATCAGATCAGAAT
1 CATGTCAAGTATCAGATCAGAAT
170711 TCAAATCGAA
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
23 18 0.22
24 60 0.74
25 3 0.04
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (24 bp):
CATGTCAAGTATCAGATCAGAATC
Found at i:171838 original size:18 final size:18
Alignment explanation
Indices: 171817--171851 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
171807 TGTCATCCGG
*
171817 TCTTATTATTTAATTCAA
1 TCTTATAATTTAATTCAA
*
171835 TCTTATAATTTACTTCA
1 TCTTATAATTTAATTCA
171852 GTCATTTGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATAATTTAATTCAA
Found at i:173188 original size:14 final size:14
Alignment explanation
Indices: 173155--173197 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
173145 GTCAACGCCA
**
173155 GTCAACGGGTCAACG
1 GTCAACGGGTC-GGG
173170 GTCAACGGGTCGGG
1 GTCAACGGGTCGGG
*
173184 GTCAATGGGTCGGG
1 GTCAACGGGTCGGG
173198 TCGGGTTAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.19, C:0.21, G:0.44, T:0.16
Consensus pattern (14 bp):
GTCAACGGGTCGGG
Found at i:173210 original size:13 final size:13
Alignment explanation
Indices: 173194--173229 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
173184 GTCAATGGGT
*
173194 CGGGTCGGGTTAA
1 CGGGTCGGGTAAA
173207 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
*
173220 CGAGTCGGGT
1 CGGGTCGGGT
173230 CAGTTATGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.17, C:0.17, G:0.47, T:0.19
Consensus pattern (13 bp):
CGGGTCGGGTAAA
Found at i:173211 original size:18 final size:19
Alignment explanation
Indices: 173175--173216 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
173165 CAACGGTCAA
*
173175 CGGGTCGGGGTCAATGGGT
1 CGGGTCGGGGTCAACGGGT
*
173194 CGGGTC-GGGTTAACGGGT
1 CGGGTCGGGGTCAACGGGT
173212 CGGGT
1 CGGGT
173217 AAACGAGTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.10, C:0.17, G:0.52, T:0.21
Consensus pattern (19 bp):
CGGGTCGGGGTCAACGGGT
Found at i:174244 original size:3 final size:3
Alignment explanation
Indices: 174238--174269 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
174228 TTTTTTTGTT
174238 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
174270 TGTATATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:174389 original size:30 final size:30
Alignment explanation
Indices: 174349--174406 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
174339 ATTTTGTATA
*
174349 TATATATTATTTTTATTA-TTTTATTTTCCT
1 TATATATTATTTAT-TTATTTTTATTTTCCT
*
174379 TATATTTTATTTATTTATTTTTATTTTC
1 TATATATTATTTATTTATTTTTATTTTC
174407 TTCTTGTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.72
Consensus pattern (30 bp):
TATATATTATTTATTTATTTTTATTTTCCT
Found at i:174400 original size:25 final size:23
Alignment explanation
Indices: 174355--174399 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
174345 TATATATATA
174355 TTATTTTTATTATTTTATTTTCC
1 TTATTTTTATTATTTTATTTTCC
174378 TTATATTTTATT-TATTTATTTT
1 TTAT-TTTTATTAT-TTTATTTT
174400 TATTTTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (23 bp):
TTATTTTTATTATTTTATTTTCC
Found at i:174465 original size:9 final size:9
Alignment explanation
Indices: 174451--174485 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
174441 ACTACTTTCC
174451 TTTATTTTA
1 TTTATTTTA
174460 TTTATTTTA
1 TTTATTTTA
*
174469 TCTATTTTA
1 TTTATTTTA
174478 TTTATTTT
1 TTTATTTT
174486 TTCTCTCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:174476 original size:18 final size:18
Alignment explanation
Indices: 174453--174499 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
174443 TACTTTCCTT
174453 TATTTTATTTATTTTATC
1 TATTTTATTTATTTTATC
*
174471 TATTTTATTTATTTTTTC
1 TATTTTATTTATTTTATC
*
174489 TCTCTTTATTT
1 TAT-TTTATTT
174500 TTATTTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (18 bp):
TATTTTATTTATTTTATC
Found at i:174506 original size:20 final size:19
Alignment explanation
Indices: 174460--174507 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
174450 CTTTATTTTA
174460 TTTATTTTATCTATTTTATT
1 TTTATTTT-TCTATTTTATT
* *
174480 TAT-TTTTTCTCTCTTTATT
1 TTTATTTTTCTAT-TTTATT
174499 TTTATTTTT
1 TTTATTTTT
174508 ATTACATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 4 0.17
19 12 0.52
20 7 0.30
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTATTTTTCTATTTTATT
Found at i:174970 original size:16 final size:16
Alignment explanation
Indices: 174949--175003 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
174939 TCAAAAATAT
174949 TTTTTAAACTATATAA
1 TTTTTAAACTATATAA
** **
174965 TTTTTAAAAAATATTT
1 TTTTTAAACTATATAA
174981 TCTTTTAAAACTATATAA
1 T-TTTT-AAACTATATAA
174999 TTTTT
1 TTTTT
175004 TAAATGTTTT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
16 13 0.45
17 8 0.28
18 8 0.28
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTTAAACTATATAA
Found at i:175004 original size:18 final size:18
Alignment explanation
Indices: 174947--175007 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 18
174937 TTTCAAAAAT
174947 ATTTTTT-AAACTATATA
1 ATTTTTTAAAACTATATA
*
174964 A-TTTTTAAAA-AATAT-
1 ATTTTTTAAAACTATATA
*
174979 TTTCTTTTAAAACTATATA
1 ATT-TTTTAAAACTATATA
174998 ATTTTTTAAA
1 ATTTTTTAAA
175008 TGTTTTCAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
16 10 0.29
17 12 0.34
18 11 0.31
19 2 0.06
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTTTTTAAAACTATATA
Found at i:175063 original size:36 final size:35
Alignment explanation
Indices: 175005--175256 Score: 181
Period size: 36 Copynumber: 6.8 Consensus size: 35
174995 ATAATTTTTT
*
175005 AAATGTTTTCAAAAATTATATATTATATAAATTTTCAA
1 AAATGTTTT-AAAAA--CTATATTATATAAATTTTCAA
* *
175043 AAATGTTTTTAAAAACTATATATTATATAAGTTTTAAA
1 AAATG-TTTTAAAAAC--TATATTATATAAATTTTCAA
* **
175081 AAATGTTTTCAAAACTATATATTATATATGTTTTC-A
1 AAATGTTTTAAAAAC--TATATTATATAAATTTTCAA
** * *
175117 AAATGATTTTAAAATTTATA-TATAATATATTTTCCTA
1 AAATG-TTTTAAAAACTATATTAT-ATAAATTTT-CAA
*
175154 AAATGTTTTAAAAACTATA-TATTATACAGTTTTCAA
1 AAATGTTTTAAAAACTATATTA-TATA-AATTTTCAA
* *
175190 AAGTGTTTTAAAAACCATATATTATATACATTTTC-A
1 AAATGTTTTAAAAA-C-TATATTATATAAATTTTCAA
*
175226 AAATGTTTTTTAGAAACTATA-TATTATAAAT
1 AAATG--TTTTAAAAACTATATTA-TATAAAT
175257 GTATTTTCAA
Statistics
Matches: 178, Mismatches: 21, Indels: 32
0.77 0.09 0.14
Matches are distributed among these distances:
34 3 0.02
35 14 0.08
36 54 0.30
37 52 0.29
38 49 0.28
39 6 0.03
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (35 bp):
AAATGTTTTAAAAACTATATTATATAAATTTTCAA
Found at i:175095 original size:37 final size:37
Alignment explanation
Indices: 175005--175253 Score: 276
Period size: 37 Copynumber: 6.7 Consensus size: 37
174995 ATAATTTTTT
* *
175005 AAATGTTTTCAAAAATTATATATTATATAAATTTTCAA
1 AAATGTTTT-AAAAACTATATATTATATAAGTTTTCAA
*
175043 AAATGTTTTTAAAAACTATATATTATATAAGTTTTAAA
1 AAATG-TTTTAAAAACTATATATTATATAAGTTTTCAA
* *
175081 AAATGTTTTCAAAACTATATATTATATATGTTTTC-A
1 AAATGTTTTAAAAACTATATATTATATAAGTTTTCAA
** * *
175117 AAATGATTTTAAAATTTATATATAATAT-A-TTTTCCTA
1 AAATG-TTTTAAAAACTATATATTATATAAGTTTT-CAA
*
175154 AAATGTTTTAAAAACTATATATTATA-CAGTTTTCAA
1 AAATGTTTTAAAAACTATATATTATATAAGTTTTCAA
* *
175190 AAGTGTTTTAAAAACCATATATTATATACA-TTTTC-A
1 AAATGTTTTAAAAACTATATATTATATA-AGTTTTCAA
*
175226 AAATGTTTTTTAGAAACTATATATTATA
1 AAATG--TTTTAAAAACTATATATTATA
175254 AATGTATTTT
Statistics
Matches: 180, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
35 4 0.02
36 57 0.32
37 60 0.33
38 55 0.31
39 4 0.02
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (37 bp):
AAATGTTTTAAAAACTATATATTATATAAGTTTTCAA
Found at i:175920 original size:84 final size:83
Alignment explanation
Indices: 175829--176288 Score: 462
Period size: 84 Copynumber: 5.5 Consensus size: 83
175819 TATGTTGTAG
* *
175829 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGT-TTTCGGCTGGCAGATAGCCCTTCT
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTT-GG-TCGCAGATAACCCTTCT
*
175893 CGACTTAAGCTATGCTGCAA
64 CGACTTAAGTTATGCTGCAA
* **
175913 ATGATGTGCCTTTGAGCTGAGCGTAGTCAAACAT-GAAGGTCTTTTGGTCATAGATAACCCTTCT
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAAC-TCGAAGGTC-TTTGGTCGCAGATAACCCTTCT
* * * * *
175977 AGCCTTGAGGTATGCTGTAA
64 CGACTTAAGTTATGCTGCAA
* * * * * * * *
175997 ATGATGTACCATCGAAGCTGAGTGTAATCAAACTCGAAGGTC-TT--TAGCATATAGCCCTTCTC
1 ATGATGTGCC-TTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTCGCAGATAACCCTTCTC
*
176059 GACTTAAGTTATACTGCAA
65 GACTTAAGTTATGCTGCAA
* * ** *
176078 ATGATGTGCCTTTGAGCTGAGCGTATTTGAACTCGAAGGTCTTTAGTTCGCAGATAACCCTTCTC
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTT-GGTCGCAGATAACCCTTCTC
*
176143 GACTTAAGTTATGTTGCAA
65 GACTTAAGTTATGCTGCAA
* * * * *
176162 ATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACATATAACCCTTCTA
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTC-TTTGGTCGCAGATAACCCTTCTC
* * *
176227 GCCTTGAGTTATGCTGTAA
65 GACTTAAGTTATGCTGCAA
* * * * *
176246 ATGATGTGCCCTCGAAGCTAAGTGTAGTCGAACTCGAAGGTCT
1 ATGATGTG-CCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCT
176289 CTGGGGGGAA
Statistics
Matches: 308, Mismatches: 57, Indels: 22
0.80 0.15 0.06
Matches are distributed among these distances:
80 24 0.08
81 37 0.12
83 2 0.01
84 183 0.59
85 59 0.19
86 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (83 bp):
ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTCGCAGATAACCCTTCTCG
ACTTAAGTTATGCTGCAA
Found at i:176085 original size:165 final size:164
Alignment explanation
Indices: 175810--176288 Score: 528
Period size: 165 Copynumber: 2.9 Consensus size: 164
175800 AGCCTTTTTT
* *
175810 GCCTTGAGTTATGTTGTAGATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTTTTCGG
1 GCCTTGAGTTATGTTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTT---
* *
175875 CTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGT
63 -TGGCATATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGT
* *
175940 CAAACAT-GAAGGTCTTTTGGTCATAGATAACCCTTCTA
127 CAAAC-TCGAAGGTCTTTAGGTCACAGATAACCCTTCTA
* * * * * * * *
175978 GCCTTGAGGTATGCTGTAAATGATGTACCATCGAAGCTGAGTGTAATCAAACTCGAAGGTCTTTA
1 GCCTTGAGTTATGTTGTAAATGATGTGCC-TTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTG
* * **
176043 GCATATAGCCCTTCTCGACTTAAGTTATACTGCAAATGATGTGCCTTTGAGCTGAGCGTATTTGA
65 GCATATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCAA
* * *
176108 ACTCGAAGGTCTTTAGTTCGCAGATAACCCTTCTC
130 ACTCGAAGGTCTTTAGGTCACAGATAACCCTTCTA
* * * * *
176143 GACTTAAGTTATGTTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTG
1 GCCTTGAGTTATGTTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTC-TTTG
* * * * * * * * *
176208 GTCACATATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTAAGTGTAG
65 G---CATATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTTG-AGCTGAGCGTAG
*
176273 TCGAACTCGAAGGTCT
126 TCAAACTCGAAGGTCT
176289 CTGGGGGGAA
Statistics
Matches: 258, Mismatches: 46, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
164 27 0.10
165 114 0.44
168 65 0.25
169 52 0.20
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (164 bp):
GCCTTGAGTTATGTTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGG
CATATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCAAA
CTCGAAGGTCTTTAGGTCACAGATAACCCTTCTA
Found at i:176115 original size:249 final size:249
Alignment explanation
Indices: 175829--176288 Score: 699
Period size: 249 Copynumber: 1.8 Consensus size: 249
175819 TATGTTGTAG
* * *
175829 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGT-TTTCGGCTGGCAGATAGCCCTTCT
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTT-AGCTCGCAGATAACCCTTCT
* *
175893 CGACTTAAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCAAACAT-GAAGGTCTTT
65 CGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAAC-TCGAAGGTCTTT
* *
175957 TGGTCATAGATAACCCTTCTAGCCTTGAGGTATGCTGTAAATGATGTACCATCGAAGCTGAGTGT
129 TGGTCACAGATAACCCTTCTAGCCTTGAGGTATGCTGTAAATGATGTACCATCGAAGCTAAGTGT
176022 AATCAAACTCGAAGGTCTTTAGCATATAGCCCTTCTCGACTTAAGTTATACTGCAA
194 AATCAAACTCGAAGGTCTTTAGCATATAGCCCTTCTCGACTTAAGTTATACTGCAA
* * ** *
176078 ATGATGTGCCTTTGAGCTGAGCGTATTTGAACTCGAAGGTCTTTAGTTCGCAGATAACCCTTCTC
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTAGCTCGCAGATAACCCTTCTC
* * *
176143 GACTTAAGTTATGTTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTG
66 GACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTTG
* * * * *
176208 GTCACATATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTAAGTGTAG
131 GTCACAGATAACCCTTCTAGCCTTGAGGTATGCTGTAAATGATGTACCATCGAAGCTAAGTGTAA
*
176273 TCGAACTCGAAGGTCT
196 TCAAACTCGAAGGTCT
176289 CTGGGGGGAA
Statistics
Matches: 188, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
248 1 0.01
249 184 0.98
250 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (249 bp):
ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTAGCTCGCAGATAACCCTTCTC
GACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTTG
GTCACAGATAACCCTTCTAGCCTTGAGGTATGCTGTAAATGATGTACCATCGAAGCTAAGTGTAA
TCAAACTCGAAGGTCTTTAGCATATAGCCCTTCTCGACTTAAGTTATACTGCAA
Found at i:176679 original size:14 final size:15
Alignment explanation
Indices: 176662--176694 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
176652 AAATATGTTA
176662 AAAAAATA-AAAAAG
1 AAAAAATATAAAAAG
176676 -AAAAATATAAAAAG
1 AAAAAATATAAAAAG
176690 AAAAA
1 AAAAA
176695 TGTTAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (15 bp):
AAAAAATATAAAAAG
Found at i:176685 original size:15 final size:14
Alignment explanation
Indices: 176663--176695 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
176653 AATATGTTAA
176663 AAAAATA-AAAAAG
1 AAAAATATAAAAAG
176676 AAAAATATAAAAAG
1 AAAAATATAAAAAG
176690 AAAAAT
1 AAAAAT
176696 GTTAATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (14 bp):
AAAAATATAAAAAG
Found at i:176753 original size:4 final size:4
Alignment explanation
Indices: 176744--176801 Score: 52
Period size: 4 Copynumber: 15.0 Consensus size: 4
176734 GTAAAAAGAA
*
176744 AAAT AAAT AAAT AAAT -AA- AAAT AAA- ACAGT AAAT AAAT -AAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT
*
176789 GAAAA AAAT AAAT
1 -AAAT AAAT AAAT
176802 TCCACTAGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
3 8 0.18
4 32 0.73
5 4 0.09
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:176765 original size:18 final size:18
Alignment explanation
Indices: 176742--176800 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
176732 TAGTAAAAAG
176742 AAAAATAAATAAATAAAT
1 AAAAATAAATAAATAAAT
*
176760 AAAAATAAA-ACAGTAAAT
1 AAAAATAAATA-AATAAAT
*
176778 AAATAATAAATGAAAAAAAT
1 AAA-AATAAAT-AAATAAAT
176798 AAA
1 AAA
176801 TTCCACTAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.03
18 18 0.53
19 6 0.18
20 8 0.24
21 1 0.03
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (18 bp):
AAAAATAAATAAATAAAT
Found at i:178096 original size:2 final size:2
Alignment explanation
Indices: 178089--178131 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
178079 AAATAAATAA
* *
178089 AT AT AT AT AT AT AT AT A- AT AT AC AC AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
178129 AT A
1 AT A
178132 CAATGTACAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:178123 original size:28 final size:28
Alignment explanation
Indices: 178088--178142 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
178078 TAAATAAATA
*
178088 AATATATATATATATATAATATACACAT
1 AATATATATATATATACAATATACACAT
*
178116 AATATATATATATATACAATGTACACA
1 AATATATATATATATACAATATACACA
178143 GATGCATGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (28 bp):
AATATATATATATATACAATATACACAT
Found at i:178928 original size:168 final size:163
Alignment explanation
Indices: 178753--179120 Score: 395
Period size: 164 Copynumber: 2.2 Consensus size: 163
178743 GTAGTGTGAT
* *
178753 TGATGTGCCATCGAGCTGAATAG-AGTCGAACTCGACAAAT-TTAT-TGACAGATAACCCTTCTT
1 TGATGTGCCATCGAGCTG-AGAGTAGTCGAACTCGA-AAATCTT-TGTGACAGATAACCCTTCTA
* * * * *
178815 GCCTTGAGCTATGCTGTAAATTTGGTTTG-CCTCTG-AGCTGAATGTAATCGAACTCGAAGGCCT
63 GCCTTGAGCTATGCTGTAAA--TGATGTGCCCTC-GAACCTGAATATAATCGAACTCG-AGG--G
*
178878 TCGGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAA
122 TC-GTTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAA
* * * **
178921 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGC
1 TGATGTGCCATCGAGCTGAGAGTAGTCGAACTCGAAAATCTTT-GTGACAGATAACCCTTCTAGC
* * *
178986 CTTGAGTTATGCTGTAAATGATGTGCCCTCGAACCTGAGTATAATCGAACTCGAGGGTCTTTGGC
65 CTTGAGCTATGCTGTAAATGATGTGCCCTCGAACCTGAATATAATCGAACTCGAGGGTCGTTGGC
* * *
179051 AGATAGCCCTTTTCGACTTAAGTTATACTGCAAA
130 AGATAACCCTTCTCGACTTAAGCTATACTGCAAA
* * * *
179085 TGATGTGCCTTGGAGTTGAGCGTAGTCGAACTCGAA
1 TGATGTGCCATCGAGCTGAGAGTAGTCGAACTCGAA
179121 GGTATTTGGT
Statistics
Matches: 174, Mismatches: 20, Indels: 16
0.83 0.10 0.08
Matches are distributed among these distances:
164 70 0.40
165 2 0.01
167 14 0.08
168 52 0.30
169 36 0.21
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (163 bp):
TGATGTGCCATCGAGCTGAGAGTAGTCGAACTCGAAAATCTTTGTGACAGATAACCCTTCTAGCC
TTGAGCTATGCTGTAAATGATGTGCCCTCGAACCTGAATATAATCGAACTCGAGGGTCGTTGGCA
GATAACCCTTCTCGACTTAAGCTATACTGCAAA
Found at i:179097 original size:164 final size:168
Alignment explanation
Indices: 178796--179177 Score: 490
Period size: 164 Copynumber: 2.3 Consensus size: 168
178786 GACAAATTTA
* * * * * *
178796 TTGACAGATAACCCTTCTTGCCTTGAGCTATGCTGTAAATTTGGTTTG-CCTCTGAGCTGAATGT
1 TTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAA--TGATATGCCCTCTGACCTGAATAT
* *
178860 AATCGAACTCGAAGGCCTTCGGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGAT
64 AATCGAACTCGAAGG-CGTCGGTTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGAT
*
178925 GTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
128 GTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGG
* *
178966 -TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTC-GAACCTGAGTATA
1 TTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCTG-ACCTGAATATA
* * * *
179029 ATCGAACTCG-AGG-GTC-TTTGGCAGATAGCCCTTTTCGACTTAAGTTATACTGCAAATGATGT
65 ATCGAACTCGAAGGCGTCGGTTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGT
*
179091 GCCTTGGAGTTGAGCGTAGTCGAACTCGAAGGTATTTGG
130 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGG
* * * *
179130 TTGGA-AGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCC
1 TT-GACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCC
179178 TTGGAGCTGA
Statistics
Matches: 188, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
164 78 0.41
165 41 0.22
166 2 0.01
167 9 0.05
168 22 0.12
169 36 0.19
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (168 bp):
TTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCTGACCTGAATATAA
TCGAACTCGAAGGCGTCGGTTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTG
CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGG
Found at i:179203 original size:164 final size:164
Alignment explanation
Indices: 178882--179231 Score: 461
Period size: 164 Copynumber: 2.1 Consensus size: 164
178872 AGGCCTTCGG
*
178882 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
* * * * *
178947 CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGC
66 CGAACTCGAAGGTATTTGGTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGC
* * *
179012 CCTCGAACCTGAGTATAATCGAACTCGAGGGTCT
131 CCTCGAACCTGAGCATAATCAAACTCGAAGGTCT
* * * *
179046 TTGGCAGATAGCCCTTTTCGACTTAAGTTATACTGCAAATGATGTGCCTTGGAGTTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
*
179111 CGAACTCGAAGGTATTTGGTTGGA-AGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATAT
66 CGAACTCGAAGGTATTTGG-T-GACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATAT
* * * * *
179175 G-CCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTT
129 GCCCTCGAACCTGAGCATAATCAAACTCGAAGGTC-T
179211 TTGGTGACAGATAACCCTTCT
1 TT-G-G-CAGATAACCCTTCT
179232 AGCCTTGAGT
Statistics
Matches: 159, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
164 103 0.65
165 40 0.25
166 3 0.02
167 1 0.01
168 12 0.08
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (164 bp):
TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
CGAACTCGAAGGTATTTGGTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGC
CCTCGAACCTGAGCATAATCAAACTCGAAGGTCT
Done.