Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008982.1 Hibiscus syriacus cultivar Beakdansim tig00112344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2253222
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 12
Found at i:1013149 original size:16 final size:16
Alignment explanation
Indices: 1013128--1013158 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1013118 TTCTCTTCTT
1013128 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1013144 GTTATATATAATAGT
1 GTTATATATAATAGT
1013159 TCCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1013446 original size:31 final size:32
Alignment explanation
Indices: 1013409--1013486 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 32
1013399 TATAATAATC
*
1013409 GTTATATGTAATAGTTCTGCTATTAATCGT-A
1 GTTATATATAATAGTTCTGCTATTAATCGTCA
*
1013440 GTTATATATAATAGTTCTTCTATTAATCGTCA
1 GTTATATATAATAGTTCTGCTATTAATCGTCA
1013472 -TTATATATAATAGTT
1 GTTATATATAATAGTT
1013487 TAATGATTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 43 0.98
32 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (32 bp):
GTTATATATAATAGTTCTGCTATTAATCGTCA
Found at i:1013805 original size:2 final size:2
Alignment explanation
Indices: 1013798--1013822 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1013788 GAAGATCTGG
1013798 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1013823 CGTATATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1014538 original size:2 final size:2
Alignment explanation
Indices: 1014531--1014559 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
1014521 TACTCTAATC
1014531 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1014560 GTTCGAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1016468 original size:16 final size:16
Alignment explanation
Indices: 1016447--1016477 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1016437 CTTCTTACTG
1016447 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1016463 GTTATATATAATAGT
1 GTTATATATAATAGT
1016478 TCCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1016931 original size:793 final size:792
Alignment explanation
Indices: 1015405--1018232 Score: 3724
Period size: 793 Copynumber: 3.6 Consensus size: 792
1015395 CTTCTTATTG
* * * ** *
1015405 GTTATATATAATAGTTCCGCTATTAATCGGGCAATCGGCGGAGCAAGATCGGCTGGTATTTTTTA
1 GTTATATATAATAGTTCCGCTATTAATCAGGTAATCGGCGGAGCAAGACCAACTGGTATTTTGTA
* ** * * *
1015470 AATGATAAATTATATG-TCCTTTCAAAAATATATTAATAATGGGGATAACTC-ATATGAGAGAAC
66 AATGATAAATTATATGCT-CTTTCAAAAAGATATTAATAGCGGGGATAGCTCAAT-TGGGAGAGC
* * * * **
1015533 ATTAGACTGAATATCTGAAGGTCGTGTGTTCGATCCACGCTCATAGCATGAACTTTGTAATTTTT
129 GTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAACTTTGTAATTTTT
*
1015598 TCACGTTAGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTCTTACTTGTTATATAT
194 TCACGTTAGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTCTTACTGGTTATATAT
* * * * *
1015663 AATAGTCATTATATATAATAGTTTCGTTGTTAATTA-GACAATCGGCGGAGCAAGACCAACAT-G
259 AATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGA-AATCGGCGGAGCAAGACCAAC-TGG
* * * *
1015726 TATTTTGTAAATGAT-AATTCTATGTTCTTTCAAAAAGATATTAATAACGGGGATAACTCAGTTG
322 AATTTTGTAACTGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAACTCAGTTG
* * *
1015790 GGAGAGCGTCAGATTGAAGATCTGAAGGTCGCGTGTTCGATTCACGCTCACTGCATGAACTTTAT
387 GGAGAGCATCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACTGCATGAACTTTAT
* * * * *
1015855 AATTTTTTCACGTTGGTCTCTCGCTCTCCCTGCTAATGAAATAT-ACATATTCTGTTATTACAGG
452 AATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGAAT-TGACCTATTCTCTT-TTACTGG
* *
1015919 TTTTATAAAATAGTCGTTATATATAATAGTTCCACTATTAATCAGACAATCGGCGGAGCAAGACC
515 TTATATATAATAGTCGTTATATATAATAGTTCCACTATTAATCAGACAATCGGCGGAGCAAGACC
1015984 AGCTGGTATTTTGTAACTGATAAATTCTATGATCTTTCAAAAAGATATTACTAGCGGTGATAGCT
580 AGCTGGTATTTTGTAACTGATAAATTCTATGATCTTTCAAAAAGATATTACTAGCGGTGATAGCT
* *
1016049 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTTGCGTGTTCGATTCATGCTCACCTTATGAA
645 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTTGCGTGTTCGATCCATGCTCACCGTATGAA
*
1016114 CTTTGTAATTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTTTTA
710 CTTTGTAATTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTATTA
*
1016179 TTGTTTATAAATAATAGTC
775 TTG-TTATATATAATAGTC
* *
1016198 GTTATATATAATAGTTCCGCTATTAATCAGGTAATCGGTGGAGCAAGACCAACTGGTATTTTTTA
1 GTTATATATAATAGTTCCGCTATTAATCAGGTAATCGGCGGAGCAAGACCAACTGGTATTTTGTA
* * * * *
1016263 AATGATAAATTATGTGCTCTTTCGAAAAGATATTAATAGCAGTGATAGCTCAATTGGGAGAGCGC
66 AATGATAAATTATATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCTCAATTGGGAGAGCGT
*
1016328 CAGACTGAAGATCTGAAGGTCGCGTGTTTGATCCACGCTCACCGCATGAACTTTGTAATTTTTTC
131 CAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAACTTTGTAATTTTTTC
* * ** * *
1016393 ACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTAGTTTATTCACTTCTTACTGGTTATATATAA
196 ACGTTAGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTCTTACTGGTTATATATAA
* *
1016458 TAGTCGTTATATATAATAGTTCCGCTATTAATCAGGAAATCGACGGAACAAGACCAACTGGAATT
261 TAGTCGTTATATATAATAGTTCCGCTATTAATCAGGAAATCGGCGGAGCAAGACCAACTGGAATT
* * * *
1016523 TTGTATA-TGATAAATTCTATGTTCTTTCAAAAAGATATTAATAGTGTGGATAGCTCAGTTGGGA
326 TTGTA-ACTGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAACTCAGTTGGGA
* * * * * * * *
1016587 CATCATCGGACTAAAGATCTTAAGGTCGCGTGTTTGATCCACGCTCACTGTATGAATTTTATAA-
390 GAGCATCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACTGCATGAACTTTATAAT
1016651 TTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGAATTGACCTATTCTCTTCTTACTGGTTAT
455 TTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGAATTGACCTATTCTCTT-TTACTGGTTAT
* * ** * * *
1016716 ATATGATAGTCGTTATATATAAAAGTTCCACTATTAATCAGGTAATCAGTGGAGCAAGATCAGCT
519 ATATAATAGTCGTTATATATAATAGTTCCACTATTAATCAGACAATCGGCGGAGCAAGACCAGCT
* * * * * *
1016781 GGTATTTTTTAAATGATAAATTATGTGCTCTTTCAAAAAGATATTGA-TAGCGGGGA-AGGCTCA
584 GGTATTTTGTAACTGATAAATTCTATGATCTTTCAAAAAGATATT-ACTAGCGGTGATA-GCTCA
* * * * * * *
1016844 GTTGGGTGAGCGTTAGACTGAAGATCTGAAGGTCGTGTGTTCGACCCGTGCTCACCGCATGAACT
647 GTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTTGCGTGTTCGATCCATGCTCACCGTATGAACT
* * * *
1016909 TTGTAATTTTTCACGATGGTCTCTCGCTCTCCATGTTAATGGATTTGGCCTAT--T-TTCTTCTT
712 TTGTAATTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTATTATT
1016971 GTTATATATAATAGTC
777 GTTATATATAATAGTC
*
1016987 GTTATATATAATAGTTCCGCTATTAATCAGGTAATCGACGGAGCAAGA-CAAGCTGGTATTTTGT
1 GTTATATATAATAGTTCCGCTATTAATCAGGTAATCGGCGGAGCAAGACCAA-CTGGTATTTTGT
* * * * * *
1017051 AAATGATAAATTCTATGCTCTTTTAAAAATATATTAATAGTGGGGATAGCTCAGTTGGTAGAGCG
65 AAATGATAAATTATATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCTCAATTGGGAGAGCG
* * * * *
1017116 TCGGACTAAAGATCTTAAGGTTGCGTGTTCGATCCACGCTCACCGTATGAACTTTGTAATTTTTT
130 TCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAACTTTGTAATTTTTT
* ** ** * *
1017181 CACGTTGGTCTCTCATTCT-CCTGCCAATGGATTCGACCTATACTCTTCTTACTGGTTATATATA
195 CACGTTAGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTCTTACTGGTTATATATA
* * * * * *
1017245 ATAGTCGTTATATATAATAGTTTCGCTATTAATCAGGCAATTGGTGGAGCAAGACTAA-TTGATA
260 ATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGAAATCGGCGGAGCAAGACCAACTGGA-A
* * * * * *
1017309 TTTTGTAATTGATAAATTCTATGCACATTCAAAAATATATTAATAGCGGGGATAATTTAGTTGGG
324 TTTTGTAACTGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAACTCAGTTGGG
*** * * * *
1017374 AGAGCATCAGACTGAAGATCTGAAGGTCATTTGTTTGATCCACACTCACCGCATGAGCTTTATAA
389 AGAGCATCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACTGCATGAACTTTATAA
*
1017439 TTTTTTCATC-TTGGTCTCTCGCTCTCCCTGTTAATGGAATTGACCTATTCTCTTTCTAATGGTT
454 TTTTTTCA-CGTTGGTCTCTCGCTCTCCCTGTTAATGGAATTGACCTATTCTCTTT-TACTGGTT
1017503 AT-TATAATAGTCGTTATATATAATAGTTCCACTATTAATCAGACAATCGGCGGAGCAAGACCAG
517 ATATATAATAGTCGTTATATATAATAGTTCCACTATTAATCAGACAATCGGCGGAGCAAGACCAG
* *
1017567 CTGGTATTTTGTAACTGATAAATTCTATGATCTTTCAAAAATATATTACTAGCAGTGATAGCTCA
582 CTGGTATTTTGTAACTGATAAATTCTATGATCTTTCAAAAAGATATTACTAGCGGTGATAGCTCA
* *
1017632 GTTGGGAGAGCGTCATACTGAAGATCTGAAGGTTGCGTGTTCGATCCACGCTCACCGTATGAACT
647 GTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTTGCGTGTTCGATCCATGCTCACCGTATGAACT
1017697 TTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTATTAC
712 TTGTAA-TTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTATTA-
* *
1017762 TAGTTATATATAATAGTT
775 TTGTTATATATAATAGTC
* * * * * *
1017780 GTTATATATAATAGATT-CACTTTTAATCAGGGAATCGGTGTAGGAAGACCAA-TAGGTATTTTG
1 GTTATATATAATAG-TTCCGCTATTAATCAGGTAATCGGCGGAGCAAGACCAACT-GGTATTTTG
* * * *
1017843 TAACTGATAAATTCTATGCTCTTTC-AAATGATATTAATAGCGGGGATAGCTCAGTTGGGAGAGC
64 TAAATGATAAATTATATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCTCAATTGGGAGAGC
* * * * *
1017907 GTCAGACTGAAGATTTGAAGGTCGCATGTTCGATCCACGTTCACCGTATGAAATTTGTAATTTTT
129 GTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAACTTTGTAATTTTT
* * *
1017972 TCACGTTAGTCACTTGCTCTCCCTGTTAATGGATTTGGCCTATTCTCTTCTTACTGGTTATATAT
194 TCACGTTAGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTCTTACTGGTTATATAT
* * * * * * * *
1018037 AATAGTCGTTATATATAATAGTTTCAG-TATTAATCAAGCAATCGGTGGCGGAAGACCAATTGGT
259 AATAGTCGTTATATATAATAG-TTCCGCTATTAATCAGGAAATCGGCGGAGCAAGACCAACTGGA
* * *
1018101 ATTTTGTAACTCG-TAAATTCTATGCTCTTTCAAAAAGATATTAATAG-GAGGATAGCTTAGTTG
323 ATTTTGTAACT-GATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAACTCAGTTG
* * * * * * *
1018164 GGATAGCGTTAGACTGAAGACCTGAAGGTCGTGTGTTCAATCCACGCTCACTGCATGAACTTTGT
387 GGAGAGCATCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACTGCATGAACTTTAT
1018229 AATT
452 AATT
1018233 ATTAATCAGG
Statistics
Matches: 1766, Mismatches: 240, Indels: 59
0.86 0.12 0.03
Matches are distributed among these distances:
787 5 0.00
788 368 0.21
789 307 0.17
790 8 0.00
791 2 0.00
792 185 0.10
793 772 0.44
794 119 0.07
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (792 bp):
GTTATATATAATAGTTCCGCTATTAATCAGGTAATCGGCGGAGCAAGACCAACTGGTATTTTGTA
AATGATAAATTATATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCTCAATTGGGAGAGCGT
CAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAACTTTGTAATTTTTTC
ACGTTAGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTCTTACTGGTTATATATAA
TAGTCGTTATATATAATAGTTCCGCTATTAATCAGGAAATCGGCGGAGCAAGACCAACTGGAATT
TTGTAACTGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAACTCAGTTGGGAG
AGCATCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACTGCATGAACTTTATAATT
TTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGAATTGACCTATTCTCTTTTACTGGTTATAT
ATAATAGTCGTTATATATAATAGTTCCACTATTAATCAGACAATCGGCGGAGCAAGACCAGCTGG
TATTTTGTAACTGATAAATTCTATGATCTTTCAAAAAGATATTACTAGCGGTGATAGCTCAGTTG
GGAGAGCGTCAGACTGAAGATCTGAAGGTTGCGTGTTCGATCCATGCTCACCGTATGAACTTTGT
AATTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTATTATTGTTA
TATATAATAGTC
Found at i:1016992 original size:16 final size:16
Alignment explanation
Indices: 1016971--1017001 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1016961 TTTTCTTCTT
1016971 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1016987 GTTATATATAATAGT
1 GTTATATATAATAGT
1017002 TCCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1017256 original size:16 final size:16
Alignment explanation
Indices: 1017235--1017265 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1017225 CTTCTTACTG
1017235 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1017251 GTTATATATAATAGT
1 GTTATATATAATAGT
1017266 TTCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1017526 original size:16 final size:15
Alignment explanation
Indices: 1017500--1017529 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1017490 CTTTCTAATG
1017500 GTTATTATAATAGTC
1 GTTATTATAATAGTC
1017515 GTTATATATAATAGT
1 GTTAT-TATAATAGT
1017530 TCCACTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (15 bp):
GTTATTATAATAGTC
Found at i:1018049 original size:16 final size:16
Alignment explanation
Indices: 1018028--1018058 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1018018 CTTCTTACTG
1018028 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1018044 GTTATATATAATAGT
1 GTTATATATAATAGT
1018059 TTCAGTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1018348 original size:168 final size:168
Alignment explanation
Indices: 1018064--1018400 Score: 446
Period size: 168 Copynumber: 2.0 Consensus size: 168
1018054 ATAGTTTCAG
* * * *
1018064 TATTAATCAAGCAATCGGTGGCGGAAGACCAATTGGTATTTTGTAACTCGTAAATTCTATGCTCT
1 TATTAATCAAGCAATCGGTGGAGCAAGACCAAATGGTATTTTGTAAATCGTAAATTCTATGCTCT
* * * *** *
1018129 TTCAAAAAGATATTAATAGGAGGATAGCTTAGTTGGGATAGCGTTAGACTGAAGACCTGAAGGTC
66 TTCAAAAAGATATTAATAGGAGGATAGCTCAGTTAGGAAAGCAACAGACTGAAGACCTAAAGGTC
* *
1018194 GTGTGTTCAATCCACGCTCACTGCATGAACTTTGTAAT
131 GCGTGTTCAATCCACACTCACTGCATGAACTTTGTAAT
* *
1018232 TATTAATCAGGGAATCGGTGGAGCAAGACCAACAT-GTATTTTGTAAAT-GATAAATTCTATGCT
1 TATTAATCAAGCAATCGGTGGAGCAAGACCAA-ATGGTATTTTGTAAATCG-TAAATTCTATGCT
* *
1018295 CTTTCAAAAAGATATTAATAGGGGGAT-GACTCAGTTAGGAAAGCAACAGACTGAAGATCTAAAG
64 CTTTCAAAAAGATATTAATAGGAGGATAG-CTCAGTTAGGAAAGCAACAGACTGAAGACCTAAAG
* * *
1018359 GTCGCGTGTTCGATCCACACTCATTGCATGAGCTTTGTAAT
128 GTCGCGTGTTCAATCCACACTCACTGCATGAACTTTGTAAT
1018400 T
1 T
1018401 TTTTCAAGTT
Statistics
Matches: 146, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
167 2 0.01
168 143 0.98
169 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (168 bp):
TATTAATCAAGCAATCGGTGGAGCAAGACCAAATGGTATTTTGTAAATCGTAAATTCTATGCTCT
TTCAAAAAGATATTAATAGGAGGATAGCTCAGTTAGGAAAGCAACAGACTGAAGACCTAAAGGTC
GCGTGTTCAATCCACACTCACTGCATGAACTTTGTAAT
Found at i:1018481 original size:16 final size:16
Alignment explanation
Indices: 1018460--1018490 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1018450 CTTCTTACTG
1018460 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1018476 GTTATATATAATAGT
1 GTTATATATAATAGT
1018491 TCCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1019182 original size:22 final size:22
Alignment explanation
Indices: 1019157--1019211 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
1019147 TCAGGAGTTA
* *
1019157 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* * *
1019179 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTC
*
1019201 CGGGAGTTATA
1 CAGGAGTTATA
1019212 ACAGTTGAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:1019882 original size:16 final size:16
Alignment explanation
Indices: 1019858--1019893 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1019848 ATTCTCTTCT
* *
1019858 TAGTGGTTATATATAG
1 TAGTCGTTATATATAA
1019874 TAGTCGTTATATATAA
1 TAGTCGTTATATATAA
1019890 TAGT
1 TAGT
1019894 TCTGCTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.44
Consensus pattern (16 bp):
TAGTCGTTATATATAA
Found at i:1020938 original size:16 final size:16
Alignment explanation
Indices: 1020917--1020947 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1020907 TTCTCTTCTT
1020917 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1020933 GTTATATATAATAGT
1 GTTATATATAATAGT
1020948 TTCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1021203 original size:16 final size:16
Alignment explanation
Indices: 1021182--1021212 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1021172 CTTCTTACTT
1021182 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1021198 GTTATATATAATAGT
1 GTTATATATAATAGT
1021213 TTCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1021468 original size:16 final size:16
Alignment explanation
Indices: 1021447--1021477 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1021437 CTTCTTATTG
1021447 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1021463 GTTATATATAATAGT
1 GTTATATATAATAGT
1021478 TCTGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1021732 original size:16 final size:16
Alignment explanation
Indices: 1021711--1021741 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1021701 CTTCTTACTT
*
1021711 GTTATATATAATAGTC
1 GTTATATAAAATAGTC
1021727 GTTATATAAAATAGT
1 GTTATATAAAATAGT
1021742 TTCGCTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (16 bp):
GTTATATAAAATAGTC
Found at i:1022398 original size:523 final size:524
Alignment explanation
Indices: 1019598--1032964 Score: 14211
Period size: 523 Copynumber: 25.6 Consensus size: 524
1019588 TCTCGTCTTA
* * * * ***
1019598 TTATATATAATAATCGTTATATATAATAGCTT-CACTATTAATCGGGGAATCGGTATAGCAAGAC
1 TTATATATAATAGTCGTTATATATAATAG-TTCCGCTATTAATCAGGCAATCGGCGGAGCAAGAC
* *
1019662 CATCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAAC
65 CAACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* * ** *
1019727 TCAGTTGGGAGAGCGTCAGACTGAAGATCTAAAGGTTGCGTGTTTTATCCGCGCTCACCGCATGA
130 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
*
1019792 ACTTTGTAATTTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCATATTCTCTTC
195 ACTTTGTAA-TTTTTTCACGTTGGTCTCTCG------CTGTTAATGAATTTGGCCTATTCTCTTC
* * * ** *
1019857 TTAGTGGTTATATATAGTAGTCGTTATATATAATAGTTCTGCTATTAATCAGAAAATCGGCGGAA
253 TTACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAG
* * *
1019922 TAAGACCAACTGGTATTTTGTAAATGATAAATTCTATTCTCTTTCAAAAAGATATTAATAGCGGG
318 CAAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGG
* * * ** * * *
1019987 GAAAACTAAGTTAAGAGAGCGTCAGATTAAAGATCTGAAGGTCGCGTGTTCGATCTACGCTCACC
383 GATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACC
* ** * * * * **
1020052 GCATGAGCCCTATAACTTTTTCATGTTGGTCTC-CTACTCTTTCTGTTAATGGAA-TTGGCCTAT
448 GCATGAACTTTGTAATTTTTTCACGTTGGTCTCTC-GCTCTCCCTGTTAAT-GAATTTGGCCTAT
1020115 TCTCTTCTTACTAG-
511 TCTCTTCTTACT-GT
* * * *
1020129 TTATATATAATAGTCGTTTTATATAATAGATCCGCTATTAATCAGGCAATCAGCGGAGTAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
** *
1020194 AGTTGGTATTTTTTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGA-ATGC
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATA-GC
* * * * *
1020258 TCAGTTGGGAGAGCGTCAGAATGAAGATTTGACGGTCGCGTGATCGATCCACGCTCACCGAATGA
130 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* * * * * *
1020323 ATTTTGTAATTTTTTCACATTGGTCTCTCACTTTCCCTGTTAATGGATTTGGCATATACTCTTCT
195 ACTTTGTAATTTTTTCACGTTGG--TCT--C--TCGCTGTTAATGAATTTGGCCTATTCTCTTCT
* * * * **
1020388 TACTGGTTATATATAACAGTCTTTATATAAAATAGTTTCGCTATTAATCAGAAAATCGGCGGAGC
254 TACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGC
* * * * *
1020453 AAGACCAACAGGTATTTTGTAAATGATAAATTCTATGTTCTTTCAAAAA-ATATTAATAGTGTGG
319 AAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGG
* * * * * * * *
1020517 ATAGATCTGTTGGGAGAGTGTCAGATTGAAGATCTGAAGGTTGTGTGTTCGATTCACGCTCACTG
384 ATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCG
* * *
1020582 CATGAACTTTATAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGAATAT-GCCTATTT
449 CATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAAT-GAATTTGGCCTATTC
* *
1020646 TGTTCTTACTGG
513 TCTTCTTACTGT
* * * *
1020658 TTATATATAATAGTCGTTATATATAATAGCTCCACTATTAATCAGGCAATCGGCGAAGCAAGA-A
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * * *
1020722 AAGTTGGTATTTTGTAAATGTTAAATTCTATGCTCTTTCAAAATGATATTAATAGCGGGGATGGC
66 AA-CTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* * * ** * *
1020787 TCAGTTAGGAGAGCGTCAGACT-ATAGATTTGAAGGTCGAGTGTTCGATCCGTGCTAATCGCATG
130 TCAGTTGGGAGAGCGTCAGACTGA-AGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATG
* * * *
1020851 AGCTTTGTAA-TTTTTCACGATGGTCTCTCGCTCTCCCTGTAGATGGATTTGGCCTATTCTCTTC
194 AACTTTGTAATTTTTTCACGTTGGTCTCTCG--CT--GT-TA-ATGAATTTGGCCTATTCTCTTC
* *
1020915 -T--T-GTTATATATAATAGTCGTTATATATAATAGTTTCGCTATTAATCGGGCAATCGGCGGAG
253 TTACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAG
* * * * * * **
1020976 CAAGACCAGTTGGTATTTTTTAAATGATAAATTATATACCCTTTCAAAAATATATTAATAATGGG
318 CAAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGG
* * * * *
1021041 GATAACTCA-TATGAGAGAGCATTAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCAT
383 GATAGCTCAGT-TGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCAC
* * * *
1021105 AGCATGAACTTTGTAATTTTTTCACGTTGGTCTCCCGCTCTCCCTGTTAATGGATTTGGCCTATA
447 CGCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATT
1021170 CTCTTCTTACT-T
512 CTCTTCTTACTGT
* ** * * *
1021182 GTTATATATAATAGTCGTTATATATAATAGTTTCGCTATTAATCAGATAATCAGTGGAACAAGAC
1 -TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGAC
* * * * *
1021247 CAACTGATATTTTGTAACTGATAAATTCTATGTTTTTTCAAAAAGATATTAATAGCGGGGATTGC
65 CAACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* * * * * * * * * *
1021312 TAAGTTGGGAGAACGTTACACTAAAGTTTTGAAGGTCACATGTTCGATCCACGCTTACCGCATGA
130 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* * *
1021377 GCTTTGTAATTTTTTCATGTTGGTCTCTCGCTCTCCTTGTTAATGGAA-TTGGCATATTCTCTTC
195 ACTTTGTAATTTTTTCACGTTGGTCTCTCG-----C-TGTTAAT-GAATTTGGCCTATTCTCTTC
* * *
1021441 TTATTGGTTATATATAATAGTCGTTATATATAATAGTTCTGCTATTAATCGGGCAATCGGCGGAG
253 TTACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAG
* * * * * **
1021506 CAAGACTAGCTGGTATTTTTTAAATGATAAATTATAT-TTCCTTTCAAAAATATATTAATAATGG
318 CAAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCT-CTTTCAAAAAGATATTAATAGCGG
* * * * *
1021570 GGATAACTCA-TATGAGAGAGCATTAGACTGAAGATATGAAGGTCGCGTGTTCGATCCACGCTCA
382 GGATAGCTCAGT-TGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCA
** * *
1021634 TTGCATGAACTTTGTAA-TTTTTCACGTTGGTCTCTCGCTCTCCCTATTAATGGATTTGGCCTAT
446 CCGCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTAT
*
1021698 ACTCTTCTTACT-T
511 TCTCTTCTTACTGT
* * *
1021711 GTTATATATAATAGTCGTTATATAAAATAGTTTCGCTATTAATCAGACAATCGGCGGAGCAAGAC
1 -TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGAC
* * *
1021776 CAACAGGTATTTTGTAAATGATAAATTCTATGTTCTTTCAAAAAGATATTAATAGTGGGGATAGC
65 CAACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* * * *
1021841 TCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCGCTTGTTCGATTCATGCTCACCGCATGA
130 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* * * * *
1021906 ACTTTATAATTTTTTCACGTTGGTCTCTCGCTGTTAATGAAATAT-ACCTATTCTGTTATTACTG
195 ACTTTGTAATTTTTTCACGTTGGTCTCTCGCTGTTAATG-AATTTGGCCTATTCTCTTCTTACTG
* * * * * *
1021970 GTTTTATAAAATAGTCATTATATATAATAGTTCCACTATTAATCAGACAATCGGCGCAGCAAGAC
259 GTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGAC
* * * ** * * *
1022035 CAGCTAGTATTTTGTAACTGATAAATTCTTTTATCTTTAAAAAAGATATTACTAGCGGTGATAGC
324 CAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* *
1022100 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGTATAA
389 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* * *
1022165 ACTTTGTAA-TTTTTCACGTTGGTCTCTCGCTCTCTCTGTTAATGAATTTGGCCTATACTCTTTT
454 ACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATTCTCTTCT
1022229 TACTGT
519 TACTGT
* * *
1022235 TTATATATAATAGTCGTTATATATAATAGTTCCTCTATTAATCAGGTAATCGGTGGAGCAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * * *
1022300 AACTGGTATTTTTTAAATGATAAATTATATGCTTTTTCGAAAAGATATTAATAGCGGGGATAGCT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
*
1022365 TAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
* *
1022430 CTTTGTAA-TTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATACTCTTTTT
196 CTTTGTAATTTTTTCACGTTGGTCTCTCG------CTGTTAATGAATTTGGCCTATTCTCTTCTT
* * * * * *
1022494 ACTGTTTATATATAATAGTCGTTATATATAATAGTTCCTCTATTAATCAGGTAATCGGTGAAGAA
255 ACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCA
* * * * * *
1022559 AGACCAACTGGTATTTTTTTAATGATAAATTATGTGCTCTTTCGAAAAGATATTAATAGCGGGGA
320 AGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGA
* * *
1022624 TAGCTCAGTT-GG-GA--G--AG-C--AAGATCTAAAGGTCGCGTGTTCGATTCATGCTCACCGC
385 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGC
* ** * *
1022680 ATGAACTTTATAATTTTTTCACACTGGTCTCTCGCTCTCCCAGTTAATGGAATAT-GCCTATTCT
450 ATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAAT-GAATTTGGCCTATTCT
* *
1022744 CTTCCTACTGG
514 CTTCTTACTGT
* * * *
1022755 TTATATAGAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGAAATCGACGGAACAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * *
1022820 AACTGGAATTTTGTATATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGTGGGGATAGCT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* * * * **
1022885 CAGTTGGGAGAGCATCGGACTAAAGATCTTAAGGTCGCGTGTTCGATCCACGCTCATTGCATGAA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
* * *
1022950 TTTTGTAA-TTTTTCACGTTGGTCTCTCACTCTCCCTGTTAATGGAA-TTGACCTATTCTCTTCT
196 CTTTGTAATTTTTTCACGTTGG----T--CTCTCGCTGTTAAT-GAATTTGGCCTATTCTCTTCT
* * * * * *
1023013 TACTGGTTATATATGATAGTCTTTATATATAAAAGTTCCTCTATTAATCAGGTAATCGGTGGAGC
254 TACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGC
* * * *
1023078 AAGATCAGCTGGTATATTT-TAAATGATAAATTATGTGCTCTTTCAAAAAGATATTGATAGCGGG
319 AAGACCAGCTGGTAT-TTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGG
* * * **
1023142 GA-AGGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCGCGTGTTTGACCCGTGCTCAC
383 GATA-GCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCAC
* * * *
1023206 CGCATAAACTTTGTAA-TTTTTCACGATGGTCTCTCGCTCTCCATGTTAATGGATTTGGCCTATT
447 CGCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATT
*
1023270 ATCTTC-T--TG-
512 CTCTTCTTACTGT
* * *
1023279 TTATATATAATA---G----------T--TT-CGCTATAAATTAGGTAATCGGCGGAGCAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * * * * *
1023328 AGCTGTTATTTTGTAAATGATAAATTCTATGCTCTTTTAAAAATATATTAATAGTGGGGATAACT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* * * * ** *
1023393 CAGTTGGTAGAGCGTCGGACTAAAGATCTTAAATTCGCGTGTTCGATCCACGCTCACTGCATGAA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
* * * * * *
1023458 CTTTG-AAATTTTTCGCATTGGTTTCTCGCTCTCCCTTTTAATGGAA-TTGACCTATTCTCTTCT
196 CTTTGTAATTTTTTCACGTTGG----T--CTCTCGCTGTTAAT-GAATTTGGCCTATTCTCTTCT
** * *
1023521 TACT-G-----T-T--TA-----TATATA-AA-AGTTCTACTATTAATCAGGTAATCGGTGGAGC
254 TACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGC
* * * * *
1023570 AAGATCAACTGGTATTTTTTAAATGATAAATTATGTGCTCTTTCAAAAAGATATTAATAGCGGGG
319 AAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGG
* * * * * *
1023635 ATAGCTCAGTTTGGAAAGCGTCAGACTGAAGATCTCAAGGTCGCATGTTCGATCCATGCTCACTG
384 ATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCG
* * * *
1023700 -AGTGAACTTTGTATTTTTTTCACGTTGGTCTCTCGCTCTCTCTGTTAATGGATTTGGTCTATTC
449 CA-TGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATTC
*
1023764 TCGTCTTA----
513 TCTTCTTACTGT
* * * * * * ***
1023772 TTATACATAATAATCGTTATATATAATAGCTT-CACTATTAATCGGGGAAACGGTATAGCAAGAC
1 TTATATATAATAGTCGTTATATATAATAG-TTCCGCTATTAATCAGGCAATCGGCGGAGCAAGAC
* *
1023836 CATCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAAC
65 CAACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* * ** *
1023901 TCAGTTGGGAGAGCGTCAGACTGAAGATCTAAAGGTTGCGTGTTTTATCCGCGCTCACCGCATGA
130 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
*
1023966 ACTTTGTAATTTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATTCTCTTT
195 ACTTTGTAA-TTTTTTCACGTTGGTCTCTCG------CTGTTAATGAATTTGGCCTATTCTCTTC
* * * ** *
1024031 TTAGTGGTTATATATAGTAGTCGTTATATATAATAGTTCTGCTATTAATCAGAAAATCGGCGGAA
253 TTACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAG
* * *
1024096 TAAGACCAACTGGTATTTTGTAAATGATAAATTCTATTCTCTTTCAAAAAGATATTAATAGCGGG
318 CAAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGG
* * * ** * * *
1024161 GAAAACTAAGTTAAGAGAGCGTCAGATTAAAGATCTGAAGGTCGCGTGTTCGATCTACGCTCACC
383 GATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACC
* ** * * * **
1024226 GCATGAGCCCTATAATTTTTTCATGTTGGTCTC-CTACTCTTTCTGTTAATGGAA-TTGGCCTAT
448 GCATGAACTTTGTAATTTTTTCACGTTGGTCTCTC-GCTCTCCCTGTTAAT-GAATTTGGCCTAT
1024289 TCTCTTCTTACTAG-
511 TCTCTTCTTACT-GT
* * * *
1024303 TTATATATAATAGTCGTTTTATATAATAGATCCGCTATTAATCAGGCAATCAGCGGAGTAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
** *
1024368 AGTTGGTATTTTTTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGA-ATGC
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATA-GC
* * * * * *
1024432 TCAGTTGGGAGAGCATCAGAATGAAGATTTGACGGTCGCGTGATCGATCCACGCTCACCGAATGA
130 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* * * * * *
1024497 ATTTTGTAATTTTTTCACATTGGTCTCTCACTTTCCCTGTTAATGGA-TTGGCATA-T-AC-TCT
195 ACTTTGTAATTTTTTCACGTTGG--TCT--C--TCGCTGTTAATGAATTTGGCCTATTCTCTTCT
* * * *
1024558 TACTGG-T-TATATAACAGTCTTTATATATAATAGTTTCGCTATTAATCAGACAATCGGCGGAGC
254 TACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGC
* * * * * *
1024621 AAGACCAACAGATATTTTGTAAATGATAAATTCTATGTTCTTTCAAAAA-ATATTAATAGTGTGG
319 AAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGG
* * * * * * *
1024685 ATAGATCAGTTGGGAGAGTGTCAGATTGAAGATCTGAAGGTTGTGTGTTCAATTCACGCTCACCG
384 ATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCG
* * *
1024750 CATGAACTTTATAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGAATAT-GCCTATTT
449 CATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAAT-GAATTTGGCCTATTC
* *
1024814 TGTTCTTACTGG
513 TCTTCTTACTGT
* ** * *
1024826 TTATATATAATAGTCGTTATATATAATAGCTCAACTATTAATCAGGCAATCGGCGAAGCAAGAAC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
** * * *
1024891 AGTTGGTATTTTGTAAATGTTAAATTCTATGCTCTTTCAAAATGATATTAATAGCGGGGATGGCT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* * * ** * *
1024956 CAGTTAGGAGAGCGTCAGACT-ATAGATTTGAAGGTCGAGTGTTCGATCCGTGCTAATCGCATGA
131 CAGTTGGGAGAGCGTCAGACTGA-AGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* * * *
1025020 GCTTTGTAA-TTTTTCACGATGGTCTCTCGCTCTCCCTGTAGATGGATTTGGCCTATTCTCTTC-
195 ACTTTGTAATTTTTTCACGTTGGTCTCTCG--CT--GT-TA-ATGAATTTGGCCTATTCTCTTCT
** *
1025083 T--T-GTTATATATAATAGTCGTTATATATAATAGTTTAGCTATTAATCGGGCAATCGGCGGAGC
254 TACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGC
* * * * * * **
1025145 AAGACCAGTTGATATTTTTTAAATGATAAATTCTATACCCTTTCAAAAATATATTAATAATGGGG
319 AAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGG
* * * * * ** **
1025210 ATAACTCA-TATGAGAGAGCATTAGACTGAAGATCTGAAGGTCGCGTGTTCAATCCTTGCTCATA
384 ATAGCTCAGT-TGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACC
* * *
1025274 GCATGAACTTTGTAATTTTTTCACGTTGGTCTCCCGCTCTCCCTGTTAATGGATTTGGCCTATAC
448 GCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATTC
1025339 TCTTCTTACT-T
513 TCTTCTTACTGT
* * * * * *
1025350 GTTATATATAATAGTCGTTATATATAATAGTTTCGCTATTAATCAGACAATCAGTGGAACAAGAA
1 -TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGAC
* * * * * *
1025415 CAACTGATATTTTGTAACTGATAAATTCTATGTTTTTTCAAAAAGATATTAATAGTGGGGATTGC
65 CAACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* * * * * * * * * *
1025480 T-ATGTTGGAAGAACGTTACACTAAAGTTTTGAAGGTCACATGTTCGATCCACGCTTACCGCATG
130 TCA-GTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATG
* *
1025544 AGCTTTGTAATTTTTTCATGTTGGTCTCTCGCTCTCCCTGTTAATGGAA-TTGGCCTATTCTCTT
194 AACTTTGTAATTTTTTCACGTTGGTCTCTCG------CTGTTAAT-GAATTTGGCCTATTCTCTT
* *
1025608 CTTATTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCGGGCAATCGGCGGA
252 CTTACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGA
* * * * * **
1025673 GCAAGACTAGCTGGTATTTTTTAAATGATAAATTATAT-TTCCTTTCAAAAATATATTAATAATG
317 GCAAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCT-CTTTCAAAAAGATATTAATAGCG
* * * * * *
1025737 GGGATAACTCA-TATGAGAGAGCATTAGACTGAAGATATGAAGGTCGCGTGTTCGATCCACACTC
381 GGGATAGCTCAGT-TGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTC
** *
1025801 ATTGCATGAACTTTGTAA-TTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTA
445 ACCGCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTA
*
1025865 TACTCTTCTTACT-T
510 TTCTCTTCTTACTGT
* * *
1025879 GTTATATATAATAGTCGTTATATAAAATAGTTTCGCTATTAATCAGACAATCGGCGGAGCAAGAC
1 -TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGAC
* *
1025944 CAACAGGTATTTTGTAAATGATAAATTCTATGTTCTTTCAAAAAGATATTAATAGCGGGGATAGC
65 CAACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* * *
1026009 TCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCGCGTGTTCGATTCATGCTCACCGCATGA
130 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* * * * *
1026074 ACTTTATAATTTTTTCACGTTGGTCTCTCGCTGTTAATGAAATAT-ACCTATTCTGTTATTACTG
195 ACTTTGTAATTTTTTCACGTTGGTCTCTCGCTGTTAATG-AATTTGGCCTATTCTCTTCTTACTG
* * * * * *
1026138 GTTTTATAAAATAGTCATTATATATAACAGTTCCACTATTAATCAGACAATCGGCGGAGCAAGAC
259 GTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGAC
* * * * * *
1026203 CAGCTAGTATTTTGTAACTGATAAATTCTTTGATCTTTCAAAAAGATATTACTAGCGGTGATAGC
324 CAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* *
1026268 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGTATAA
389 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* * * *
1026333 ACTTTGTAA-TTTTTCACATTGGTCTCTCGCTCTCTCTGTTAATGAATTTGGCCTATACTCTTTT
454 ACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATTCTCTTCT
1026397 TACTGT
519 TACTGT
* * *
1026403 TTATATATAATAGTCGTTATATATAATAGTTCCTCTATTAATCAGGTAATCGGTGGAGCAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * *
1026468 AACTGGTATTTTTTAAATGATAAATTATATGCTCTTTCGAAAAGATATTAATAGCGGGGATAGCT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
*
1026533 TAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
*
1026598 CTTTGTAA-TTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATACTCTTCTT
196 CTTTGTAATTTTTTCACGTTGGTCTCTCG------CTGTTAATGAATTTGGCCTATTCTCTTCTT
* * * *
1026662 ACTTGTTATATATAATAGTCGTTATATAAAATAGTTTCGCTATTAATCAGACAATCGGCGGAGCA
255 ACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCA
* * *
1026727 AGACCAACAGGTATTTTGTAAATGATAAATTCTATGTTCTTTCAAAAAGATATTAATAGCGGGGA
320 AGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGA
* * *
1026792 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCGCGTGTTCGATTCATGCTCACCGC
385 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGC
* * *
1026857 ATGAACTTTATAATTTTTTCACGTTGGTCTCTCG------CTGTTAATGAAATAT-ACCTATTCT
450 ATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATG-AATTTGGCCTATTCT
* *
1026915 GTTATTACTCGT
514 CTTCTTACT-GT
* * * *
1026927 TT-TATAAAATAGTCATTATATATAATAGTTCCACTATTAATCAGACAATCGGCGGAGCAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * * * * * * *
1026991 AGCTAGTATTTTGTAACTGATAAATTCTTTGATCTTTAAAAAAGATATTACTAGCGGTGATAGCT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* *
1027056 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGTATAAA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
* * * *
1027121 CTTTGTAA-TTTTTCACGTTGGTCTCTCACTCTCTCTGTTAATTAATTTGGCCTATACTCTTTTT
196 CTTTGTAATTTTTTCACGTTGG----T--CTCTCGCTGTTAATGAATTTGGCCTATTCTCTTCTT
* * * *
1027185 ACTGTTTATATATAATAGTCGTTATATATAATAGTTCCTCTATTAATCAGGTAATCGGTGGAGCA
255 ACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCA
* * * * *
1027250 AGACCAACTGGTATTTTTTTAAATGATATATTATATGCTCTTTCGAAAAGATATTAATAGCGGGG
320 AGACCAGCTGGTA-TTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGG
* *
1027315 ATAGCTTAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCATCG
384 ATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCG
*
1027380 CATGAACTTTGTAA-TTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATACT
449 CATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATTCT
*
1027444 CTTTTTACTGT
514 CTTCTTACTGT
* * * *
1027455 TTATATATAATAGTCGTTATATATAATAGTTCCTCTATTAATCAGGTAATCGGTGAAGCAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * * *
1027520 AACTGGTATTTTTTAAATGATAAATTATGTGCTCTTTCGAAAAGATATTAATAGCGGGGATAGCT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* * * *
1027585 CAGTTGGGAGAGCGTCAGACTGAAGATCTAAAGGTCGCATGTTCGATTCATGCTCACCGCATGAA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
* ** * * *
1027650 CTTTATAATTTTTTCACACTGGTCTCGCTCTCCCAGTTAATGGAATAT-GCCTA-T-TC-TC-TA
196 CTTTGTAATTTTTTCACGTTGG--T--CTCTCGCTGTTAAT-GAATTTGGCCTATTCTCTTCTTA
* * * *
1027710 CTGGTTATATATTATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGAAATCGACGGAACAA
256 CTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAA
* * * *
1027775 GACCAACTGGAATTTTGTATATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGTGGGGAT
321 GACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGAT
* * * * **
1027840 AGCTCAGTTGGGAGAGCATCGGACTAAAGATCTTAAGGTCGCGTGTTCGATCCACGCTCATTGCA
386 AGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCA
* * * * *
1027905 TGAATTTTATAA-TTTTTCACGTTGGTCTCTCACTCTCCCTGTTACTGGAA-TTGACCTATTCTC
451 TGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAAT-GAATTTGGCCTATTCTC
*
1027968 TTCTTACTGG
515 TTCTTACTGT
* * * * * * *
1027978 TTATATATGATAGTCTTTATATATAAAAGTTCCTCTATTAATCAGGTAATCGGTGGAGCAAGATC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * * *
1028043 AGCTGGTATATTT-TAAATGATAAATTATGTGCTCTTTCAAAAAGATATTGATAGCGGGGA-AGG
66 AACTGGTAT-TTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATA-G
* * **
1028106 CTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCGCGTGTTCGACCCGTGCTCACCGCATG
129 CTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATG
* * *
1028171 AACTTTGTAA-TTTTTCACGATGGTCTATCGCTCTCCATGTTAATGGATTTGGCCTATTCTCTTC
194 AACTTTGTAATTTTTTCACGTTGGTC--T--CTC-GC-TGTTAATGAATTTGGCCTATTCTCTTC
* * *
1028235 -T--T-GTTATATATAATA---G----------T--TT-CGCTATAAATTAGGTAATCGGCGGAG
253 TTACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAG
* * * *
1028280 CAAGACCAGCTGTTATTTTGTAAATGATAAATTCTATGCTCTTTTAAAAATATATTAATAGTGGG
318 CAAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGG
* * * * * ** *
1028345 GATAACTCAGTTGGTAGAGCGTCGGACTAAAGATCTTAAATTCGCGTGTTCGATCCACGCTCACT
383 GATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACC
* * * * *
1028410 GCATGAACTTTGAAATTTTTTGCA--TTGGTTTCTCGCTCTCCCTTTTGATGGAA-TTGACCTAT
448 GCATGAACTTTGTAATTTTTT-CACGTTGGTCTCTCGCTCTCCCTGTTAAT-GAATTTGGCCTAT
1028472 TCTCTTCTTACTG-
511 TCTCTTCTTACTGT
** * * *
1028485 -----T-T--TA-----TATATA-AA-AGTTCTACTATTAATCAGGTAATCGGTGGAGCAAGATC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * * * *
1028535 AATTAGTATTTTTTAAATGATAAATTATGTGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* * * * *
1028600 CAGTTTGGAAAGCGTCAGACTGAAGATCTCAAGGTCGCATGTTCGATCCATGCTCACCG-AGTGA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCA-TGA
* * * *
1028664 ACTTTGTATTTTTTTTCACGTTGGTCTCTCGCTCTCTCTGTTAATGGATTTGGTCTATTCTCGTC
195 ACTTTGTA-ATTTTTTCACGTTGGTCTCTCG------CTGTTAATGAATTTGGCCTATTCTCTTC
* * * * * * ***
1028729 TTA----TTATACATAATAATCGTTATATATAATAGCTT-CACTATTAATCGGGGAAACGGTATA
253 TTACTGGTTATATATAATAGTCGTTATATATAATAG-TTCCGCTATTAATCAGGCAATCGGCGGA
*
1028789 GCAAGACCATCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGG
317 GCAAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGG
* * * ** *
1028854 GGATAACTCAGTTGGGAGAGCGTCAGACTGAAGATCTAAAGGTTGCGTGTTTTATCCGCGCTCAC
382 GGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCAC
1028919 CGCATGAACTTTGTAATTTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTAT
447 CGCATGAACTTTGTAA-TTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTAT
* *
1028984 TCTCTTCTTAGTGG
511 TCTCTTCTTACTGT
* * ** * **
1028998 TTATATATAGTAGTCGTTATATATAATAGTTCTGCTATTAATCAGAAAATCGGTGGAATAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * *
1029063 AACTGGTATTTTGTAAATGATAAATTCTATTCTCTTTCAAAAAGATATTAATAGCGGGGAAAACT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* ** * * * * * * * *
1029128 AAGTTAAGAGAGCGTCAGATTAAAGATCTGAAGGCCTCGTGTTTGATCTACGCTCACCGCGTGAG
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
** * * * *
1029193 CCCTATAATTTTTTCATGTTGGTCTCCTACTCTTTCTGTTAATGGAA-TTGGCCTATTATCTTCT
196 CTTTGTAATTTTTTCACGTTGG--T-CT-CTC--GCTGTTAAT-GAATTTGGCCTATTCTCTTCT
* * *
1029257 TACTAGTTATATATAATAGTCGTTATATATAATAGATCCGCTATTAATCAGGCAATCGGCGGAGT
254 TACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGC
* *
1029322 AAGACCAGTTGGTATTTTTTAAATGATAAATTCTATGCTCTTTCAAAAAAGATATTAATAGCGGG
319 AAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTC-AAAAAGATATTAATAGCGGG
* * * * *
1029387 GA-ATGCTCAGTTGGGAGAGCATCAGAATGAAGATTTGACA-GTCGCGTGATCTATCCACGCTCA
383 GATA-GCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGA-AGGTCGCGTGTTCGATCCACGCTCA
* * * *
1029450 CCGAATGAATTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCATAT
446 CCGCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTAT
* * *
1029515 ACTCTCCTTACTGG
511 TCTCTTCTTACTGT
* * *
1029529 TTATATATAATAGTCGTTATATATAATAGTTTCGCTATTAATCAGACAATCGGAGGAGCAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * ** *
1029594 AACAGGTATTTTGTAAATGATAAATTCTATGTTCTTTCAAAAA-ATATTAATAGCATGGATAGAT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* * * *
1029658 CAGTTGGGAGAGTGTCAGATTGAAGATCTGAAGGTTGCGTGTTCGATTCACGCTCACCGCATGAA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
* * *
1029723 CTTTATAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAAATAT-GCCTATTCTGTTCT
196 CTTTGTAATTTTTTCACGTTGGTCTCTCG------CTGTTAATG-AATTTGGCCTATTCTCTTCT
* * * * *
1029787 TACTGGTTATATATAATAGTCATTATATATAATAGCTCCACTATTAATCAGGCAATCGACGAAGC
254 TACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGC
* * * * *
1029852 AAGAGCAGTTGGTATTTTGCAAATGTTAAATTCTATGCTCTTTCAAAATGATATTAATAGCGGGG
319 AAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGG
* * ** * * ** * *
1029917 ATGGCTGAGTAAGGAGAGCGTCAGACT-ATAGATTTGAAGGTCGAGTGTTCGATCCGTGCTAATC
384 ATAGCTCAGTTGGGAGAGCGTCAGACTGA-AGATCTGAAGGTCGCGTGTTCGATCCACGCTCACC
* * * *
1029981 GCATGAGCTTTGTAA-TTTTTCACGATGGTCTCTCGCTCTCCCTG-TAGATGGATTTGACCTATT
448 GCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTA-ATGAATTTGGCCTATT
1030044 CTCTTC-T--TG-
512 CTCTTCTTACTGT
* * * *
1030053 TTATATATAATAGTCGTTATATATAATAGTTTCACTATTAATCGGGCAATCGGCGGAGCACGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
** * * * ** *
1030118 AGTTGGTATTTTTTAAATGATAAATTCTATGCCCTTTCAAAAATATATTAATAATGGGGATAACT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* * * * * * **
1030183 CA-TATGAGAGAGCATTAGACTGAAGATTTGAAGGTCGCGTTTTTGATCCACGCTCATAGCATGA
131 CAGT-TGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* *
1030247 ACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTATACTCTTCT
195 ACTTTGTAATTTTTTCACGTTGGTCTCTCG------CTGTTAATGAATTTGGCCTATTCTCTTCT
* * * * * *
1030312 TACTTGTTATATATAATAGTCGTTATATATAATAGTTTCGCTATTAATCAGACAATCAGTGGAAC
254 TACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGC
* * * * *
1030377 AAGACCAACTGATATTTTGTAACTGATAAATTCTATGTTTTTTCAAAAAGATATTAATAGCGGGG
319 AAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGG
* * * * * * * * * * * *
1030442 ATTGCTAAGTTGGGAGATCGTTACACTAAAGTTTTAAAGGTCACATGTTCGATCCACGCTTACCG
384 ATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCG
* *
1030507 CATGAGCTTTGTAATTTTTTCATGTTGGTCTCTCGCTCTCCCTGTTAATGGAA-TTGGCCTATTC
449 CATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAAT-GAATTTGGCCTATTC
* *
1030571 TCTTCTTATTGG
513 TCTTCTTACTGT
1030583 TTATATATAATAGTCG-T-TATATAATAGTT-CGCTA-TAATC-GGACAATCGGCGGAGCAAGAC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGG-CAATCGGCGGAGCAAGAC
* * * * ** *
1030643 CAGCTGGTATTTTTTAAATGATAAATTATATG-TCCTTTCAAAAATATATTAATAATGGGGATAA
65 CAACTGGTATTTTGTAAATGATAAATTCTATGCT-CTTTCAAAAAGATATTAATAGCGGGGATAG
** * * **
1030707 CTCA-TATAAGAGAGCATTAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCATAGCAT
129 CTCAGT-TGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCAT
* * *
1030771 GAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCATATACTCTT
193 GAACTTTGTAATTTTTTCACGTTGGTCTCTCG------CTGTTAATGAATTTGGCCTATTCTCTT
* * *
1030836 CTTACTTGTTATATATAATAGTCGTTATATATAATAGTTTCGCTATTAATCAGACAATCGGCGGA
252 CTTACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGA
* *
1030901 GCAAGACCAACAT-GTATTTTGTAAATGATAAATTCTATGTTCTTTCAAAAAGATATTAATAGCG
317 GCAAGACCAGC-TGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCG
* * *
1030965 GGGATAACTCAGTTGGGAGAGCGTCAGACTGAAGATTTGAAGGTCGCGTGTTCGATTCACGCTCA
381 GGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCA
* * ** *
1031030 CCGCATGAACTTTATAATTTTTTCACATTGGTCTCTCGCTCTTTCTGTTAATGGAATAT-GCCTA
446 CCGCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAAT-GAATTTGGCCTA
* * *
1031094 TTCTGTTATTATTGGT
510 TTCTCTTCTTACT-GT
* * * *
1031110 TT-TATAAAATAGTCGTTATATATAATAGTTCCACTCA-TAATCAGGCAATCGGCGGAGCAATAG
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCT-ATTAATCAGGCAATCGGCGGAGCAAGAC
* * *
1031173 CAGCTGGTATTTTGTAACTGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGAATAGC
65 CAACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGC
* * * * * * *
1031238 TCAGTTGGGAGAGCTTCAGACTGAAGATTTGATGGGCGCATGTTCAATCCACGCTCACCGTATGA
130 TCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGA
* * * *
1031303 ACTTTGTAATTTTTTCACGTTGGTCTCTTGCTCTCCCTGTAGAT-AGATTTGGCCTATACACTTC
195 ACTTTGTAATTTTTTCACGTTGGTCTC-T-CGCT--GT-TA-ATGA-ATTTGGCCTATTCTCTTC
* * * *
1031367 TTACGGGTTATATATAATAGTCGTTATATATAATAGTTTCGCTATTAATCAGGCAATCAGTGGAG
253 TTACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAG
* * *
1031432 CAAGACCA-ATAGGCT-TTTTGTAACTGATAAATTCTATGCTATTTCAAAAAGATATTAATAGCG
318 CAAGACCAGCT-GG-TATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCG
* * * * * * *
1031495 GAGATAGCACAGTTGGGAGAGCGT-TGATTGAAGATCTGAAGATCGCATGTTTGATCCACGCTCA
381 GGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCA
* * * *
1031559 CTGCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTTTCCCAGTTAATGGATTTGGCCTAT
446 CCGCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTAT
* ***
1031624 ACTCTTCTTACCAA
511 TCTCTTCTTACTGT
* * * *
1031638 TTATATATAATAGTCGTTATATATAATAGTTTCACTATTAATCAGGCAATCAGTGGAGCAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * * * * *
1031703 AACTGATATTTTGTAACTGATAAATTCTATGTTTTTTCAAAAGGATATTAATAGCGGGGATTGCT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
** * * * * * * *
1031768 CAGTTGGGAGAATGTTAGACTGAAGATTTGAAGGTCACATGTTCGATCCACGCTTACTGCATGAG
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
* * * *
1031833 CTTTGTAATTTTTTTCATGTTGGTCTCTCACTCTCCCTGTTAATGGAA-TTAGTCTATTCTCTTC
196 CTTTGTAA-TTTTTTCACGTTGG----T--CTCTCGCTGTTAAT-GAATTTGGCCTATTCTCTTC
* * * *
1031897 TTATTGGTTATATATAATAGTCATTATATATAATAGTTCAGCTATTAATCGGGCAATCGGCGGAG
253 TTACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAG
* * * * * * *
1031962 CAAGACTAGTTGATATTTTTTAAATGATAAATTCTATGCCCTTTCAAAAAATATATTAATA-TGG
318 CAAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTC-AAAAAGATATTAATAGCGG
** * * * * *
1032026 GGA-AAAT-AATATGAGAGAGCATTAGACTGAAGATCTGAAGGTCGCATGTTCGATCC-CGCTCA
382 GGATAGCTCAGT-TGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCA
** *
1032088 TAGCATGAAC-TT-TAA-TTTTTCACGTTGGTCTCTCG--CT--CTGTTAATGGA-TTGGCCTAT
446 CCGCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTAT
*
1032145 ACTCTTCTTAC---
511 TCTCTTCTTACTGT
* *
1032156 ----------T--T-G-T-TATATAATAGTTTCGCTATTAATCAGACAATCGGCGGAGCAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * *
1032206 AACAGGTATTTTGTAAATGATAAATTCTATGTTCTTTCAAAAA-ATATTAATAGCGGGGATAACT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* * * * *
1032270 TAGTTGGGAGAGTGTCAGACTGAAGATCTGAAGGTTGCGTGTTCGATTCATGCTCACCGCATGAA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
* * * *
1032335 CTTTATAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGGAATAT-GCTTATTCTGTTCT
196 CTTTGTAATTTTTTCACGTTGGTCTCTCG------CTGTTAAT-GAATTTGGCCTATTCTCTTCT
* * * *
1032399 TACTGG-T-TATATAATAGTCGTTATATAT-A-AGCTCCACTATTAATCAGGCAATCGACGAAGC
254 TACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGC
* * * * *
1032460 AAGAGCAGTTTGTATTTTGTAAATGTTAAATTCTATGCTCTTTCAAAATGATATTAATAGCGGGG
319 AAGACCAGCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGG
* * * * ** * *
1032525 ATGGCTCAGTTAGGAGAGCGTCAGACT-ATAGATTTGAAGGTCGAGTGTTCGATCCGTGCTAATC
384 ATAGCTCAGTTGGGAGAGCGTCAGACTGA-AGATCTGAAGGTCGCGTGTTCGATCCACGCTCACC
* * * *
1032589 GCATGAGCTTTGTAA-TTTTTCACGATGGTCTCTCGCTCTCCATGTTAATGGATTTGGCCTATTC
448 GCATGAACTTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATTC
1032653 TCTTC-T--TG-
513 TCTTCTTACTGT
* * * *
1032661 TT-TATATAATAGTCGTTATATATAATAGTTCCGGTATTAACCAGGTAATTGGCGGAGCAAGACC
1 TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
* * *
1032725 ATCTGTTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAACT
66 AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
* ** * *
1032790 CAGTTGGGAGAGCGTCAGACTGAAGATCTAAAGGTCGCGTGTTTTATTCGCGCTCACCGCATGAA
131 CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
* * *
1032855 CTTTGTAATTTTTTCATGTTGGTCTCTCGCTCTCCCTGTTAATGGATTTGGCCTACTCTCTTCTT
196 CTTTGTAATTTTTTCACGTTGGTCTCTCG------CTGTTAATGAATTTGGCCTATTCTCTTCTT
* * *
1032920 AGTGGTTATATATAATAATCGTTATATATAATAGTTCTGCTATTA
255 ACTGGTTATATATAATAGTCGTTATATATAATAGTTCCGCTATTA
1032965 GTTCTTCTAT
Statistics
Matches: 10993, Mismatches: 1460, Indels: 773
0.83 0.11 0.06
Matches are distributed among these distances:
490 3 0.00
491 8 0.00
492 308 0.03
493 65 0.01
494 63 0.01
495 7 0.00
496 14 0.00
497 71 0.01
498 38 0.00
499 38 0.00
500 3 0.00
501 65 0.01
502 82 0.01
503 82 0.01
504 1 0.00
505 17 0.00
506 17 0.00
507 5 0.00
508 402 0.04
509 154 0.01
510 156 0.01
511 47 0.00
512 43 0.00
514 1 0.00
516 3 0.00
517 2 0.00
518 7 0.00
519 130 0.01
520 530 0.05
521 41 0.00
522 112 0.01
523 1868 0.17
524 660 0.06
525 893 0.08
526 637 0.06
527 288 0.03
528 684 0.06
529 1469 0.13
530 1256 0.11
531 614 0.06
532 94 0.01
533 1 0.00
534 6 0.00
535 1 0.00
536 7 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (524 bp):
TTATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACC
AACTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCT
CAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAA
CTTTGTAATTTTTTCACGTTGGTCTCTCGCTGTTAATGAATTTGGCCTATTCTCTTCTTACTGGT
TATATATAATAGTCGTTATATATAATAGTTCCGCTATTAATCAGGCAATCGGCGGAGCAAGACCA
GCTGGTATTTTGTAAATGATAAATTCTATGCTCTTTCAAAAAGATATTAATAGCGGGGATAGCTC
AGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATGAAC
TTTGTAATTTTTTCACGTTGGTCTCTCGCTCTCCCTGTTAATGAATTTGGCCTATTCTCTTCTTA
CTGT
Found at i:1022775 original size:16 final size:16
Alignment explanation
Indices: 1022754--1022784 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1022744 CTTCCTACTG
1022754 GTTATATAGAATAGTC
1 GTTATATAGAATAGTC
*
1022770 GTTATATATAATAGT
1 GTTATATAGAATAGT
1022785 TCCGCTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (16 bp):
GTTATATAGAATAGTC
Found at i:1024056 original size:16 final size:16
Alignment explanation
Indices: 1024032--1024067 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1024022 ATTCTCTTTT
* *
1024032 TAGTGGTTATATATAG
1 TAGTCGTTATATATAA
1024048 TAGTCGTTATATATAA
1 TAGTCGTTATATATAA
1024064 TAGT
1 TAGT
1024068 TCTGCTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.44
Consensus pattern (16 bp):
TAGTCGTTATATATAA
Found at i:1025106 original size:16 final size:16
Alignment explanation
Indices: 1025085--1025115 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1025075 TTCTCTTCTT
1025085 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1025101 GTTATATATAATAGT
1 GTTATATATAATAGT
1025116 TTAGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1025371 original size:16 final size:16
Alignment explanation
Indices: 1025350--1025380 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1025340 CTTCTTACTT
1025350 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1025366 GTTATATATAATAGT
1 GTTATATATAATAGT
1025381 TTCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1025636 original size:16 final size:16
Alignment explanation
Indices: 1025615--1025645 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1025605 CTTCTTATTG
1025615 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1025631 GTTATATATAATAGT
1 GTTATATATAATAGT
1025646 TCCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1025900 original size:16 final size:16
Alignment explanation
Indices: 1025879--1025909 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1025869 CTTCTTACTT
*
1025879 GTTATATATAATAGTC
1 GTTATATAAAATAGTC
1025895 GTTATATAAAATAGT
1 GTTATATAAAATAGT
1025910 TTCGCTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (16 bp):
GTTATATAAAATAGTC
Found at i:1026687 original size:16 final size:16
Alignment explanation
Indices: 1026666--1026696 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1026656 CTTCTTACTT
*
1026666 GTTATATATAATAGTC
1 GTTATATAAAATAGTC
1026682 GTTATATAAAATAGT
1 GTTATATAAAATAGT
1026697 TTCGCTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (16 bp):
GTTATATAAAATAGTC
Found at i:1027734 original size:16 final size:16
Alignment explanation
Indices: 1027713--1027743 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1027703 TTCTCTACTG
*
1027713 GTTATATATTATAGTC
1 GTTATATATAATAGTC
1027729 GTTATATATAATAGT
1 GTTATATATAATAGT
1027744 TCCGCTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.48
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1029016 original size:16 final size:16
Alignment explanation
Indices: 1028992--1029027 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1028982 ATTCTCTTCT
* *
1028992 TAGTGGTTATATATAG
1 TAGTCGTTATATATAA
1029008 TAGTCGTTATATATAA
1 TAGTCGTTATATATAA
1029024 TAGT
1 TAGT
1029028 TCTGCTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.44
Consensus pattern (16 bp):
TAGTCGTTATATATAA
Found at i:1029549 original size:16 final size:16
Alignment explanation
Indices: 1029528--1029558 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1029518 CTCCTTACTG
1029528 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1029544 GTTATATATAATAGT
1 GTTATATATAATAGT
1029559 TTCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1030073 original size:16 final size:16
Alignment explanation
Indices: 1030052--1030082 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1030042 TTCTCTTCTT
1030052 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1030068 GTTATATATAATAGT
1 GTTATATATAATAGT
1030083 TTCACTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1030338 original size:16 final size:16
Alignment explanation
Indices: 1030317--1030347 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1030307 CTTCTTACTT
1030317 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1030333 GTTATATATAATAGT
1 GTTATATATAATAGT
1030348 TTCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1030864 original size:16 final size:16
Alignment explanation
Indices: 1030843--1030873 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1030833 CTTCTTACTT
1030843 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1030859 GTTATATATAATAGT
1 GTTATATATAATAGT
1030874 TTCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1031394 original size:16 final size:16
Alignment explanation
Indices: 1031373--1031403 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1031363 CTTCTTACGG
1031373 GTTATATATAATAGTC
1 GTTATATATAATAGTC
1031389 GTTATATATAATAGT
1 GTTATATATAATAGT
1031404 TTCGCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
GTTATATATAATAGTC
Found at i:1033320 original size:2 final size:2
Alignment explanation
Indices: 1033313--1033357 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
1033303 GAAGATCTGG
1033313 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1033355 AT A
1 AT A
1033358 CACACACGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1033863 original size:21 final size:21
Alignment explanation
Indices: 1033838--1033883 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1033828 TTTTATCAAA
1033838 TTTAAA-AAAAATTAGGAATTT
1 TTTAAAGAAAAATTA-GAATTT
**
1033859 TTTAAAGAAATTTTAGAATTT
1 TTTAAAGAAAAATTAGAATTT
1033880 TTTA
1 TTTA
1033884 TCAAATTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (21 bp):
TTTAAAGAAAAATTAGAATTT
Found at i:1046021 original size:18 final size:18
Alignment explanation
Indices: 1045998--1046035 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1045988 AGACATATGG
*
1045998 ATAGTGGTCTTTCGGGAC
1 ATAGTGGTCATTCGGGAC
*
1046016 ATAGTGGTCATTCGGTAC
1 ATAGTGGTCATTCGGGAC
1046034 AT
1 AT
1046036 TTCTACGCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (18 bp):
ATAGTGGTCATTCGGGAC
Found at i:1052905 original size:23 final size:22
Alignment explanation
Indices: 1052855--1052919 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 22
1052845 TATTTATGTC
**
1052855 TTTGTGACATG--TTCTCTGCC
1 TTTGTGACATGTTTTCTCTGTA
*
1052875 TTTATGACATGTTTATCTCTGTA
1 TTTGTGACATGTTT-TCTCTGTA
*
1052898 TTTGTGACACGTTTTTCTCTGT
1 TTTGTGACATG-TTTTCTCTGT
1052920 CTTTTGGTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 10 0.28
22 1 0.03
23 22 0.61
24 3 0.08
ACGTcount: A:0.14, C:0.18, G:0.17, T:0.51
Consensus pattern (22 bp):
TTTGTGACATGTTTTCTCTGTA
Found at i:1053474 original size:12 final size:12
Alignment explanation
Indices: 1053457--1053481 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1053447 TGATTGAAGC
1053457 CTCAAACTCGAA
1 CTCAAACTCGAA
1053469 CTCAAACTCGAA
1 CTCAAACTCGAA
1053481 C
1 C
1053482 ATGAACCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTCAAACTCGAA
Found at i:1063333 original size:24 final size:25
Alignment explanation
Indices: 1063273--1063357 Score: 72
Period size: 24 Copynumber: 3.5 Consensus size: 25
1063263 TCAGGCCGGG
1063273 TATATA-TATA-TATTTAAATTAAA
1 TATATATTATATTATTTAAATTAAA
*
1063296 TATATATT-TTTTATTTAAATTAAA
1 TATATATTATATTATTTAAATTAAA
* * *
1063320 T-T-TATTAATATTATATATATATATA
1 TATATATT-ATATTATTTAAAT-TAAA
1063345 TATATATATATAT
1 TATATAT-TATAT
1063358 ATAAATAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
22 4 0.08
23 8 0.16
24 24 0.49
25 4 0.08
26 1 0.02
27 7 0.14
28 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TATATATTATATTATTTAAATTAAA
Found at i:1063338 original size:2 final size:2
Alignment explanation
Indices: 1063327--1063360 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
1063317 AAATTTATTA
1063327 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1063361 AATAATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1064162 original size:15 final size:16
Alignment explanation
Indices: 1064142--1064174 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1064132 GAATACAAAC
1064142 TTTTTAT-AAAAATAT
1 TTTTTATGAAAAATAT
*
1064157 TTTTTATGAAAATTAT
1 TTTTTATGAAAAATAT
1064173 TT
1 TT
1064175 AGCAAACAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TTTTTATGAAAAATAT
Found at i:1067085 original size:19 final size:19
Alignment explanation
Indices: 1067063--1067100 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1067053 GTGAGAAGGT
1067063 TCCAATAACTTTTAAACTA
1 TCCAATAACTTTTAAACTA
1067082 TCCAATAACTTTTAAACTA
1 TCCAATAACTTTTAAACTA
1067101 ACCCATTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (19 bp):
TCCAATAACTTTTAAACTA
Found at i:1068639 original size:33 final size:33
Alignment explanation
Indices: 1068545--1068641 Score: 113
Period size: 33 Copynumber: 2.9 Consensus size: 33
1068535 CAATACAGCT
* * * *
1068545 GCATATTCCTTAATATATTGAACATGACATGCA
1 GCATATTCCTTAATATATTGATCATAATATACA
* * *
1068578 TCATATTCCTTAATTTATCGATCATAATATACA
1 GCATATTCCTTAATATATTGATCATAATATACA
* *
1068611 GCATAGTCCTAAATATATTGATCATAATATA
1 GCATATTCCTTAATATATTGATCATAATATA
1068642 AGTCATTTCA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.37
Consensus pattern (33 bp):
GCATATTCCTTAATATATTGATCATAATATACA
Found at i:1078088 original size:2 final size:2
Alignment explanation
Indices: 1078081--1078125 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
1078071 ATTTTAGAAA
1078081 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1078123 AT A
1 AT A
1078126 ATTATTTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1078253 original size:21 final size:20
Alignment explanation
Indices: 1078227--1078265 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
1078217 TATATATTTA
1078227 TATATATTTTGAAAACATATT
1 TATATATTTT-AAAACATATT
*
1078248 TATATATTTTAATACATA
1 TATATATTTTAAAACATA
1078266 AAAATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.49
Consensus pattern (20 bp):
TATATATTTTAAAACATATT
Found at i:1078523 original size:16 final size:16
Alignment explanation
Indices: 1078502--1078532 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1078492 TTTTCAAAAT
*
1078502 AATAAAATTATTATTG
1 AATAAAATAATTATTG
1078518 AATAAAATAATTATT
1 AATAAAATAATTATT
1078533 AAAATACCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AATAAAATAATTATTG
Found at i:1079533 original size:19 final size:19
Alignment explanation
Indices: 1079509--1079545 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1079499 TTTTATTCAA
1079509 CGAAAAATTTCTGAATCAG
1 CGAAAAATTTCTGAATCAG
* *
1079528 CGAAAATTTTTTGAATCA
1 CGAAAAATTTCTGAATCA
1079546 TATTTAAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (19 bp):
CGAAAAATTTCTGAATCAG
Found at i:1080223 original size:2 final size:2
Alignment explanation
Indices: 1080216--1080258 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
1080206 TTTTAAGTTA
1080216 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1080256 AT A
1 AT A
1080259 ATTCGGGTCA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 37 0.95
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1080231 original size:25 final size:22
Alignment explanation
Indices: 1080162--1080229 Score: 84
Period size: 21 Copynumber: 3.0 Consensus size: 22
1080152 ATTTTTTAAA
1080162 TTAAGTTAATAGTAAAATATATT
1 TTAAGTTAATA-TAAAATATATT
1080185 TAATAAGTTAATATAAAA-ATATT
1 T--TAAGTTAATATAAAATATATT
*
1080208 TTAAGTTAATATATATATATAT
1 TTAAGTTAATATA-AAATATAT
1080230 ATATATATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
21 12 0.30
22 2 0.05
23 11 0.28
24 5 0.12
25 10 0.25
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (22 bp):
TTAAGTTAATATAAAATATATT
Found at i:1080529 original size:39 final size:39
Alignment explanation
Indices: 1080485--1080586 Score: 111
Period size: 39 Copynumber: 2.6 Consensus size: 39
1080475 TTTTAAAAAT
1080485 AATTTAGAATGTTAATGTGAAATAATTTAAGAAATTAAG
1 AATTTAGAATGTTAATGTGAAATAATTTAAGAAATTAAG
** * *
1080524 AATTTAGAACATT-ATGGTGTCAA-AATTTAATAAATTAAG
1 AATTTAGAATGTTAAT-GTG-AAATAATTTAAGAAATTAAG
*
1080563 ATTTTAGAATGTTAGA-GTGAAATA
1 AATTTAGAATGTTA-ATGTGAAATA
1080587 GTTTGAGGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
38 4 0.08
39 43 0.86
40 2 0.04
41 1 0.02
ACGTcount: A:0.46, C:0.02, G:0.16, T:0.36
Consensus pattern (39 bp):
AATTTAGAATGTTAATGTGAAATAATTTAAGAAATTAAG
Found at i:1081355 original size:3 final size:3
Alignment explanation
Indices: 1081347--1081402 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
1081337 TAATTTTTAG
1081347 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1081395 ATA ATA AT
1 ATA ATA AT
1081403 CGGATTTACG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:1084175 original size:20 final size:21
Alignment explanation
Indices: 1084126--1084176 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
1084116 ACCAAACCTT
1084126 TATCCTTTTTTTTCAAATCTG
1 TATCCTTTTTTTTCAAATCTG
* *
1084147 TAT-CTTTTTTTTTAATTC-G
1 TATCCTTTTTTTTCAAATCTG
*
1084166 TATCCCTTTTT
1 TATCCTTTTTT
1084177 CTATTTTCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 4 0.15
20 19 0.73
21 3 0.12
ACGTcount: A:0.16, C:0.18, G:0.04, T:0.63
Consensus pattern (21 bp):
TATCCTTTTTTTTCAAATCTG
Found at i:1095798 original size:105 final size:105
Alignment explanation
Indices: 1095611--1096586 Score: 1651
Period size: 105 Copynumber: 9.3 Consensus size: 105
1095601 AGGTTTTACC
*
1095611 CAGACCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
1095676 ATGAAGGGACCGCTGGTTGTCAACAAATATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
1095716 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
1095781 ATGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
1095821 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
1095886 ACGAAGGGACCGCTGGTTGTCAAC-AA-TTTTCCCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
1095924 CAGAGTCAATTTCAACTTCACAACGAAGGATATTAGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
1095989 ATGAAGGGACCGCTGGTTGTCAAC-AA-TTTTCCCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
1096027 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
1096092 ACGAGGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
1096132 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
1096197 ACGAAGGGACCGCTGGTTGTCAAC-AA-TTTTCCCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
1096235 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTTAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1096300 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAGA-TT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCA-ATTT
*
1096340 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
1096405 ATGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
1096445 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACA
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
1096510 ACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
* * * *
1096551 CGGAGCCAATTTCAACTTCATAGCGAAAGATATTGG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
1096587 CCTCGAAACA
Statistics
Matches: 832, Mismatches: 32, Indels: 13
0.95 0.04 0.01
Matches are distributed among these distances:
103 293 0.35
104 9 0.01
105 487 0.59
106 43 0.05
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
Found at i:1096004 original size:208 final size:207
Alignment explanation
Indices: 1095611--1096586 Score: 1641
Period size: 208 Copynumber: 4.7 Consensus size: 207
1095601 AGGTTTTACC
*
1095611 CAGACCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
1095676 ATGAAGGGACCGCTGGTTGTCAACAAATATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAA-ATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
1095741 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACA
130 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAAC-
*
1095806 AACATTTCTCAATTT
194 AA-ATTTCCCAATTT
1095821 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
1095886 ACGAAGGGACCGCTGGTTGTCAAC-AATTTTCCCAATTTCAGAGTCAATTTCAACTTCACAACGA
66 ACGAAGGGACCGCTGGTTGTCAACAAAATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGA
*
1095950 AGGATATTAGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAA
131 AGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAA
*
1096015 TTTTCCCAATTT
196 ATTTCCCAATTT
*
1096027 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
1096092 ACGAGGGGACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAA-ATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
*
1096157 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
130 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACA
*
1096222 ATTTTCCCAATTT
195 AATTTCCCAATTT
* *
1096235 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTTAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
1096300 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAGA-TTCAGAGTCAATTTCAACTTCACAAC
66 ACGAAGGGACCGCTGGTTGTCAACAAA-ATTTCTCA-ATTTCAGAGCCAATTTCAACTTCACAAC
1096364 GAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAAC
129 GAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAAC
* *
1096429 AAACATTTCTCAAATT
194 -AA-ATTTCCCAATTT
*
1096445 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACA
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * * *
1096510 ACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCATAGC
66 ACGAAGGGACCGCTGGTTGTCAAC-AA-AATTTCTCAATTTCAGAGCCAATTTCAACTTCACAAC
*
1096575 GAAAGATATTGG
129 GAAGGATATTGG
1096587 CCTCGAAACA
Statistics
Matches: 727, Mismatches: 31, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
206 97 0.13
207 4 0.01
208 395 0.54
209 5 0.01
210 183 0.25
211 42 0.06
212 1 0.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (207 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAAATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGA
AGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAA
ATTTCCCAATTT
Found at i:1096182 original size:311 final size:312
Alignment explanation
Indices: 1095617--1096586 Score: 1728
Period size: 311 Copynumber: 3.1 Consensus size: 312
1095607 TACCCAGACC
1095617 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAG
1 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAG
*
1095682 GGACCGCTGGTTGTCAACAAATATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGAT
66 GGACCGCTGGTTGTCAACAAAT-TTTCTCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGAT
1095747 ATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACATT
130 ATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACATT
1095812 TCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTC
195 TCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTC
1095877 AACTTCACGACGAAGGGACCGCTGGTTGTCAACAATTTTCCCAATTTCAGAGT
260 AACTTCACGACGAAGGGACCGCTGGTTGTCAACAATTTTCCCAATTTCAGAGT
*
1095930 CAATTTCAACTTCACAACGAAGGATATTAGACTCCAGACAACGCAAGTTCAACTTCACGATGAAG
1 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAG
*
1095995 GGACCGCTGGTTGTCAAC-AATTTTCCCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGATA
66 GGACCGCTGGTTGTCAACAAATTTTCTCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGATA
* *
1096059 TTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAGGGGACCGCTGGTTGTCAACAAACATTT
131 TTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACATTT
1096124 CTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCA
196 CTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCA
1096189 ACTTCACGACGAAGGGACCGCTGGTTGTCAACAATTTTCCCAATTTCAGAGT
261 ACTTCACGACGAAGGGACCGCTGGTTGTCAACAATTTTCCCAATTTCAGAGT
* *
1096241 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTTAACTTCACGACGAAG
1 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAG
*
1096306 GGACCGCTGGTTGTCAACAAACATTTCTCAGA-TTCAGAGTCAATTTCAACTTCACAACGAAGGA
66 GGACCGCTGGTTGTCAACAAA-TTTTCTCA-ATTTCAGAGTCAATTTCAACTTCACAACGAAGGA
1096370 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACAT
129 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACAT
*
1096435 TTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTT
194 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTT
* * * *
1096500 CAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTCGGAGC
259 CAACTTCACGACGAAGGGACCGCTGGTTGTCAAC--A-ATTTTCCCAATTTCAGAGT
* * *
1096557 CAATTTCAACTTCATAGCGAAAGATATTGG
1 CAATTTCAACTTCACAACGAAGGATATTGG
1096587 CCTCGAAACA
Statistics
Matches: 631, Mismatches: 20, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
311 301 0.48
312 5 0.01
313 280 0.44
314 1 0.00
315 1 0.00
316 43 0.07
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (312 bp):
CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAG
GGACCGCTGGTTGTCAACAAATTTTCTCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGATA
TTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACATTT
CTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCA
ACTTCACGACGAAGGGACCGCTGGTTGTCAACAATTTTCCCAATTTCAGAGT
Found at i:1098625 original size:20 final size:20
Alignment explanation
Indices: 1098596--1098646 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 20
1098586 ACCAAACCTT
1098596 TATCCTTTTTTTTCAAA-TCTG
1 TATCCTTTTTTTT-AAATTC-G
1098617 TAT-CTTTTTTTTAAATTCG
1 TATCCTTTTTTTTAAATTCG
1098636 TATCCTTTTTT
1 TATCCTTTTTT
1098647 CTATTTTCGG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.25
20 18 0.64
21 3 0.11
ACGTcount: A:0.18, C:0.16, G:0.04, T:0.63
Consensus pattern (20 bp):
TATCCTTTTTTTTAAATTCG
Found at i:1098626 original size:19 final size:19
Alignment explanation
Indices: 1098602--1098647 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
1098592 CCTTTATCCT
1098602 TTTTTTTCAAA-TCTGTATC
1 TTTTTTTCAAATTC-GTATC
*
1098621 TTTTTTTTAAATTCGTATC
1 TTTTTTTCAAATTCGTATC
*
1098640 CTTTTTTC
1 TTTTTTTC
1098648 TATTTTCGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 21 0.91
20 2 0.09
ACGTcount: A:0.17, C:0.15, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTTTTCAAATTCGTATC
Found at i:1102876 original size:20 final size:20
Alignment explanation
Indices: 1102851--1102891 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
1102841 GCTAATTTTT
1102851 TATATAATAACTTATCTTTG
1 TATATAATAACTTATCTTTG
*
1102871 TATATAGTAACTTATCTTTG
1 TATATAATAACTTATCTTTG
1102891 T
1 T
1102892 GTTTTGTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (20 bp):
TATATAATAACTTATCTTTG
Found at i:1102952 original size:32 final size:31
Alignment explanation
Indices: 1102916--1102983 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
1102906 TTTTCACTGA
* *
1102916 TTTTAAAAAATATAGGATATGATCACTTTTGT
1 TTTTAAAAAAT-TAAGATATGATCACTTTCGT
*** *
1102948 TTTTATTTAATTAAGATATGGTCACTTTCGT
1 TTTTAAAAAATTAAGATATGATCACTTTCGT
1102979 TTTTA
1 TTTTA
1102984 TTTAATTAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
31 22 0.73
32 8 0.27
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (31 bp):
TTTTAAAAAATTAAGATATGATCACTTTCGT
Found at i:1103001 original size:31 final size:31
Alignment explanation
Indices: 1102931--1103003 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
1102921 AAAAATATAG
* *
1102931 GATATGATCACTTTTGTTTTTATTTAATTAA
1 GATATGGTCACTTTCGTTTTTATTTAATTAA
1102962 GATATGGTCACTTTCGTTTTTATTTAATTAA
1 GATATGGTCACTTTCGTTTTTATTTAATTAA
*
1102993 GATGTGGTCAC
1 GATATGGTCAC
1103004 CACAAATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.49
Consensus pattern (31 bp):
GATATGGTCACTTTCGTTTTTATTTAATTAA
Found at i:1103497 original size:39 final size:38
Alignment explanation
Indices: 1103400--1103500 Score: 109
Period size: 39 Copynumber: 2.6 Consensus size: 38
1103390 ATCCTCAAAC
*
1103400 TATTTCAC-TCTAACATTCTAAAATCCTAATTTATTAAAT
1 TATTTCACAT-TAACATTCT-AAATCATAATTTATTAAAT
* *
1103439 T-TTGACAACA-TAACGTTCTAAATGCATAATTTATTAAAT
1 TATT-TC-ACATTAACATTCTAAAT-CATAATTTATTAAAT
1103478 TATTTCACATTAACATTCTAAAT
1 TATTTCACATTAACATTCTAAAT
1103501 TATTTTTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
38 9 0.18
39 38 0.75
40 4 0.08
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.42
Consensus pattern (38 bp):
TATTTCACATTAACATTCTAAATCATAATTTATTAAAT
Found at i:1103787 original size:21 final size:22
Alignment explanation
Indices: 1103763--1103821 Score: 75
Period size: 21 Copynumber: 2.6 Consensus size: 22
1103753 TAATTTTATA
1103763 TATATTAACTTAAAATAT-TTT
1 TATATTAACTTAAAATATATTT
1103784 TATATTAACTTATCAAATATATTT
1 TATATTAACTTA--AAATATATTT
*
1103808 TACTGTTAACTTAA
1 TA-TATTAACTTAA
1103822 TTTAAAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 12 0.36
23 7 0.21
24 5 0.15
25 9 0.27
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (22 bp):
TATATTAACTTAAAATATATTT
Found at i:1103851 original size:24 final size:25
Alignment explanation
Indices: 1103818--1103874 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
1103808 TACTGTTAAC
* *
1103818 TTAATTTAAAAATAT-TTTTTTATT
1 TTAATTTAAAAATATATATTTTATA
*
1103842 TTCATTTAAAAATATATATTTTATA
1 TTAATTTAAAAATATATATTTTATA
1103867 TTAATTTA
1 TTAATTTA
1103875 TTAAAAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (25 bp):
TTAATTTAAAAATATATATTTTATA
Found at i:1105359 original size:30 final size:30
Alignment explanation
Indices: 1105323--1105395 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 30
1105313 CCGAACTGCT
*
1105323 GGTTCACACCGGTTTTGCCGGTTCCCAACC
1 GGTTCACACCGATTTTGCCGGTTCCCAACC
*
1105353 GGTTCACATCGATTTTGCCGGTTCCCAACC
1 GGTTCACACCGATTTTGCCGGTTCCCAACC
*
1105383 GGTTC-TACCGATT
1 GGTTCACACCGATT
1105396 CTTTAACGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 6 0.15
30 33 0.85
ACGTcount: A:0.15, C:0.33, G:0.22, T:0.30
Consensus pattern (30 bp):
GGTTCACACCGATTTTGCCGGTTCCCAACC
Found at i:1107282 original size:2 final size:2
Alignment explanation
Indices: 1107275--1107316 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
1107265 CGCCGAACTA
1107275 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1107317 TATGCACGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1114252 original size:14 final size:15
Alignment explanation
Indices: 1114228--1114257 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
1114218 AAATTTAAAT
1114228 ATTATAAATAAATAA
1 ATTATAAATAAATAA
1114243 ATTA-AAATAAATAA
1 ATTATAAATAAATAA
1114257 A
1 A
1114258 CATAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTATAAATAAATAA
Found at i:1114706 original size:4 final size:4
Alignment explanation
Indices: 1114697--1114794 Score: 54
Period size: 4 Copynumber: 22.8 Consensus size: 4
1114687 CATATCCTTC
* * **
1114697 AAAT AAAT AAAT AAATTT GAAAT AAAT AAAT CAAC AAAT CATTT AAAAT
1 AAAT AAAT AAAT AAA--T -AAAT AAAT AAAT AAAT AAAT -AAAT -AAAT
* * *
1114746 AAAT TATT ACAA- AAAT AAAT AAAT AATT CAAAGT AAAT AAAT AAAT AAA
1 AAAT AAAT A-AAT AAAT AAAT AAAT AAAT -AAA-T AAAT AAAT AAAT AAA
1114795 GCTTACCTCC
Statistics
Matches: 71, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
3 2 0.03
4 53 0.75
5 11 0.15
6 2 0.03
7 3 0.04
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:1114784 original size:18 final size:20
Alignment explanation
Indices: 1114742--1114789 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
1114732 AAATCATTTA
*
1114742 AAATAAATTATTACAAAAAT
1 AAATAAATAATTACAAAAAT
*
1114762 AAATAAATAATT-C-AAAGT
1 AAATAAATAATTACAAAAAT
1114780 AAATAAATAA
1 AAATAAATAA
1114790 ATAAAGCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 14 0.54
19 1 0.04
20 11 0.42
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (20 bp):
AAATAAATAATTACAAAAAT
Found at i:1118026 original size:23 final size:23
Alignment explanation
Indices: 1118000--1118068 Score: 120
Period size: 23 Copynumber: 3.0 Consensus size: 23
1117990 CACCACAGCT
*
1118000 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
1118023 CGTAGAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
*
1118046 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
1118069 TATAATAATG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.20
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:1121492 original size:22 final size:21
Alignment explanation
Indices: 1121461--1121520 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 21
1121451 TTGTGTTTTC
*
1121461 TTTTTTTTTAAAATATATAAT
1 TTTTTTTTTAAAATAAATAAT
1121482 TTTATTTTTTAAAATTTTAAATAAT
1 TTT-TTTTTTAAAA---TAAATAAT
1121507 TTTTTTTTTAAAAT
1 TTTTTTTTTAAAAT
1121521 TATCAGATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
21 4 0.12
22 10 0.29
24 10 0.29
25 10 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTTTTTTAAAATAAATAAT
Found at i:1127794 original size:23 final size:23
Alignment explanation
Indices: 1127766--1127819 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
1127756 AATACATCCG
*
1127766 GATGTTGTAATAATACAGTATGA
1 GATGTTGCAATAATACAGTATGA
1127789 GATGTTGCAATAATACAGTATGA
1 GATGTTGCAATAATACAGTATGA
1127812 GATGTTGC
1 GATGTTGC
1127820 CATCTCCTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.33
Consensus pattern (23 bp):
GATGTTGCAATAATACAGTATGA
Found at i:1128574 original size:79 final size:77
Alignment explanation
Indices: 1128489--1128633 Score: 202
Period size: 77 Copynumber: 1.9 Consensus size: 77
1128479 AGGAGCCCAC
* * *
1128489 TTTTTCAATACTTGTTATTAG-GGACATACTTTTAAAATTTAATTTATTTTCTAATATTTATTTG
1 TTTTTCAATAATTGTTATTAGAGGACATA---ATAAAATTTAATTTATTTTCTAATATATATTTG
1128553 TTATTATGAGTCTAA
63 TTATTATGAGTCTAA
* * *
1128568 TTTTTCAGTAATTTTTATTAGAGGTCATAATAAAATTTAATTTATTTTCTAATATATATTTGTTA
1 TTTTTCAATAATTGTTATTAGAGGACATAATAAAATTTAATTTATTTTCTAATATATATTTGTTA
1128633 T
66 T
1128634 AATTTATAGA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 35 0.59
79 18 0.31
80 6 0.10
ACGTcount: A:0.32, C:0.06, G:0.08, T:0.54
Consensus pattern (77 bp):
TTTTTCAATAATTGTTATTAGAGGACATAATAAAATTTAATTTATTTTCTAATATATATTTGTTA
TTATGAGTCTAA
Found at i:1132418 original size:15 final size:14
Alignment explanation
Indices: 1132398--1132427 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
1132388 AATCAGATCG
1132398 AGTCAAAATATGTGA
1 AGTCAAAATAT-TGA
1132413 AGTCAAAATATTGA
1 AGTCAAAATATTGA
1132427 A
1 A
1132428 TCCAATCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.27
Consensus pattern (14 bp):
AGTCAAAATATTGA
Found at i:1132725 original size:17 final size:17
Alignment explanation
Indices: 1132705--1132737 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1132695 ATATTTATTT
1132705 ATAT-AAAATATAATATA
1 ATATGAAAA-ATAATATA
1132722 ATATGAAAAATAATAT
1 ATATGAAAAATAATAT
1132738 TATGATCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
ATATGAAAAATAATATA
Found at i:1132783 original size:35 final size:35
Alignment explanation
Indices: 1132744--1132813 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
1132734 ATATTATGAT
*
1132744 CTTGAATGGACAAATATATTATTTTTCAATATGTA
1 CTTGAATGGACAAATATATTATTGTTCAATATGTA
*
1132779 CTTGAATGGACAAATATATTATTGTTCAATGTGTA
1 CTTGAATGGACAAATATATTATTGTTCAATATGTA
1132814 AGGTCTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (35 bp):
CTTGAATGGACAAATATATTATTGTTCAATATGTA
Found at i:1133767 original size:24 final size:25
Alignment explanation
Indices: 1133740--1133799 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 25
1133730 TACATTTCAT
* ** *
1133740 ATATTTTAAAATATAGTTAATA-TA
1 ATATTTTAAAATAAAAATAAAATTA
1133764 ATA-TTTAAAATAAAAATAAAATTA
1 ATATTTTAAAATAAAAATAAAATTA
1133788 ATATTTTAAAAT
1 ATATTTTAAAAT
1133800 TATTACATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 14 0.47
24 8 0.27
25 8 0.27
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (25 bp):
ATATTTTAAAATAAAAATAAAATTA
Found at i:1136048 original size:169 final size:170
Alignment explanation
Indices: 1135757--1136245 Score: 646
Period size: 172 Copynumber: 2.9 Consensus size: 170
1135747 GGATTCTTTA
* * *
1135757 GTTGTATTCTTCTTTAACATGCTATTCTTTAAATTATTTTCTATCCAATCAAATAATGGCATGTG
1 GTTGTATTCTTCTTTAACATGCTATTCTTTAATTTATTTTCTA-CCAATCAGATAATGACATGTG
*
1135822 TCACAATCTGAGTGGGTAAAAAATAAAA-AAATTGAATAAATTAAAATAAAACATAACTCCTAAG
65 TCACAATCTGAGTGGGTAAAAAATAAAACAAATTGAATAAATTAAAATAAAACATAACTCCTAAT
* *
1135886 CATGTGATGACACATG-CTAGTATCTTGGGATCGAA-T-AC-
130 CATGTGATGACACATGTC-ACTATCGTGGGATCGAATTCACG
* *
1135924 GTTGTATTCTTCTTTAGCATGCTATTCTTTTAATTTATTTTCTACCTAATCAGATAATGACACGT
1 GTTGTATTCTTCTTTAACATGCTATTC-TTTAATTTATTTTCTACC-AATCAGATAATGACATGT
* * * * **
1135989 GACACAATTTGAATGGGTAAAAAATAAAACAAATTGAATAAATTAACATAAAACATAACTTTTAA
64 GTCACAATCTGAGTGGGTAAAAAATAAAACAAATTGAATAAATTAAAATAAAACATAACTCCTAA
* * * *
1136054 TAATGTAATGACACATGTCACTATCGTGGGATTGAATTCCCCG
129 TCATGTGATGACACATGTCACTATCGTGGGATCGAATT-CACG
* * * * *
1136097 GCTGTATTCTTCTTTAACATGTTATTCTTTAATTTATTTTTTACCCGATCAGATGATGACATGTG
1 GTTGTATTCTTCTTTAACATGCTATTCTTTAATTTATTTTCTA-CCAATCAGATAATGACATGTG
* * *
1136162 TCATAATCTGAGTGGGTTAATAATAAAACAAATTGAATAAATTAAAATAAAACATAACTCCTAAT
65 TCACAATCTGAGTGGGTAAAAAATAAAACAAATTGAATAAATTAAAATAAAACATAACTCCTAAT
*
1136227 CATGTGATGACACGTGTCA
130 CATGTGATGACACATGTCA
1136246 GTACCTTGTG
Statistics
Matches: 276, Mismatches: 37, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
167 28 0.10
168 56 0.20
169 60 0.22
170 2 0.01
172 104 0.38
173 26 0.09
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (170 bp):
GTTGTATTCTTCTTTAACATGCTATTCTTTAATTTATTTTCTACCAATCAGATAATGACATGTGT
CACAATCTGAGTGGGTAAAAAATAAAACAAATTGAATAAATTAAAATAAAACATAACTCCTAATC
ATGTGATGACACATGTCACTATCGTGGGATCGAATTCACG
Found at i:1136384 original size:17 final size:17
Alignment explanation
Indices: 1136358--1136392 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1136348 TAAATGTCAC
* *
1136358 ATCACTTCCTTAGTTAA
1 ATCACATCCTCAGTTAA
1136375 ATCACATCCTCAGTTAA
1 ATCACATCCTCAGTTAA
1136392 A
1 A
1136393 AGTTAACGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (17 bp):
ATCACATCCTCAGTTAA
Found at i:1137525 original size:17 final size:17
Alignment explanation
Indices: 1137503--1137553 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
1137493 TTCAAATTTT
1137503 TTTAAATTATATGAGAA
1 TTTAAATTATATGAGAA
*
1137520 TTTAAATT-T-T----T
1 TTTAAATTATATGAGAA
1137531 TTTAAATTATATGAGAA
1 TTTAAATTATATGAGAA
1137548 TTTAAA
1 TTTAAA
1137554 ATTTTTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 12
0.65 0.05 0.30
Matches are distributed among these distances:
11 8 0.31
12 1 0.04
13 1 0.04
15 1 0.04
16 1 0.04
17 14 0.54
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (17 bp):
TTTAAATTATATGAGAA
Found at i:1137536 original size:28 final size:28
Alignment explanation
Indices: 1137496--1137559 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
1137486 AAAATGATTC
1137496 AAATTTTTTTAAATTATATGAGAATTTA
1 AAATTTTTTTAAATTATATGAGAATTTA
*
1137524 AATTTTTTTTAAATTATATGAGAATTTA
1 AAATTTTTTTAAATTATATGAGAATTTA
1137552 AAATTTTT
1 AAATTTTT
1137560 AAATGAGACG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (28 bp):
AAATTTTTTTAAATTATATGAGAATTTA
Found at i:1139411 original size:32 final size:34
Alignment explanation
Indices: 1139347--1139422 Score: 88
Period size: 32 Copynumber: 2.3 Consensus size: 34
1139337 ATCAGGCCAG
1139347 ATATATATA-TTTAAATTAAATATATAAATATT-
1 ATATATATATTTTAAATTAAATATATAAATATTA
* *
1139379 ATATATATATTTTAATTTAAAT-TA-AATTTATTA
1 ATATATATATTTTAAATTAAATATATAA-ATATTA
1139412 ATATTATATAT
1 ATA-TATATAT
1139423 ATATATATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
31 2 0.05
32 15 0.39
33 14 0.37
34 7 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (34 bp):
ATATATATATTTTAAATTAAATATATAAATATTA
Found at i:1139546 original size:29 final size:30
Alignment explanation
Indices: 1139503--1139572 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 30
1139493 ACTAAACCCG
1139503 TCCCCATTTAACATAAACGG-TTTTCCCCA
1 TCCCCATTTAACATAAACGGTTTTTCCCCA
* *
1139532 TCCCCGTTTAGCATAAACGGTTTTTCCCCA
1 TCCCCATTTAACATAAACGGTTTTTCCCCA
*
1139562 TCTCCATTTAA
1 TCCCCATTTAA
1139573 TTCGATTTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 18 0.51
30 17 0.49
ACGTcount: A:0.24, C:0.33, G:0.09, T:0.34
Consensus pattern (30 bp):
TCCCCATTTAACATAAACGGTTTTTCCCCA
Found at i:1153231 original size:21 final size:20
Alignment explanation
Indices: 1153207--1153245 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1153197 ATTCCCCTGT
1153207 GGGGGGAACCGATTCCCTCAA
1 GGGGGG-ACCGATTCCCTCAA
*
1153228 GGGGGGATCGATTCCCTC
1 GGGGGGACCGATTCCCTC
1153246 TGCACCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.18, C:0.28, G:0.36, T:0.18
Consensus pattern (20 bp):
GGGGGGACCGATTCCCTCAA
Found at i:1157099 original size:22 final size:21
Alignment explanation
Indices: 1157057--1157096 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1157047 GAGTTTGTTT
*
1157057 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTAAAATA
1157078 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
1157097 ATAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAATA
Found at i:1160556 original size:63 final size:63
Alignment explanation
Indices: 1160445--1160603 Score: 167
Period size: 63 Copynumber: 2.5 Consensus size: 63
1160435 ATTGTTCAAG
* * * * * * * *
1160445 GTGTATCGATGCACATGAAGTGTATCGATCCACTTCTTTAAATAAAAACATCGAACGTTATCA
1 GTGTATCGATGCATAAGTAGTGCATCGATGCACTCCCTTAAATAAAAACATCGAACGTGATCA
* * **
1160508 GTGTATCGATGCATAAGTAGTGCATCGATGCAC-CCCTTAATATTAAAACATCGAAGGTGATTT
1 GTGTATCGATGCATAAGTAGTGCATCGATGCACTCCCTTAA-ATAAAAACATCGAACGTGATCA
* **
1160571 GTCTATCGATGCATGGGTAGTGCATCGATGCAC
1 GTGTATCGATGCATAAGTAGTGCATCGATGCAC
1160604 ATGTTAGGGG
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
62 5 0.06
63 75 0.94
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (63 bp):
GTGTATCGATGCATAAGTAGTGCATCGATGCACTCCCTTAAATAAAAACATCGAACGTGATCA
Found at i:1160618 original size:24 final size:20
Alignment explanation
Indices: 1160591--1160648 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 20
1160581 GCATGGGTAG
*
1160591 TGCATCGATGCACATGTTAGGGGA
1 TGCATCGATGCAC-TG-TA--GAA
*
1160615 TGCATCGATACACTGTAGAA
1 TGCATCGATGCACTGTAGAA
1160635 TGCATCGATGCACT
1 TGCATCGATGCACT
1160649 TCAAGGGAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 15 0.48
22 2 0.06
23 2 0.06
24 12 0.39
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (20 bp):
TGCATCGATGCACTGTAGAA
Found at i:1162240 original size:23 final size:23
Alignment explanation
Indices: 1162210--1162261 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
1162200 AATCTTATAT
* *
1162210 GGCACTACGGTACATTTCTACGC
1 GGCACTACGGTACAATTATACGC
* *
1162233 GGCACTACGGTGCAATTATACGT
1 GGCACTACGGTACAATTATACGC
1162256 GGCACT
1 GGCACT
1162262 TTGGTGCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTACAATTATACGC
Found at i:1174612 original size:16 final size:15
Alignment explanation
Indices: 1174591--1174621 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
1174581 TTTCAGTGAA
1174591 CTTAACGAGCAACGAG
1 CTTAACGAGC-ACGAG
1174607 CTTAACGAGCACGAG
1 CTTAACGAGCACGAG
1174622 TCAAGCAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.35, C:0.26, G:0.26, T:0.13
Consensus pattern (15 bp):
CTTAACGAGCACGAG
Found at i:1176985 original size:15 final size:15
Alignment explanation
Indices: 1176965--1176994 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1176955 TTTATCAAGC
1176965 ATTGATTAATTTGCT
1 ATTGATTAATTTGCT
1176980 ATTGATTAATTTGCT
1 ATTGATTAATTTGCT
1176995 TCAAATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.13, T:0.53
Consensus pattern (15 bp):
ATTGATTAATTTGCT
Found at i:1179490 original size:90 final size:88
Alignment explanation
Indices: 1179287--1179496 Score: 303
Period size: 89 Copynumber: 2.3 Consensus size: 88
1179277 CACCCTGCCC
* * *
1179287 GAAGGTCTTATGGATGGCCCGAAGGACATACAAATCAATAAACCCCCGAAGACTTAGTTTCTAAA
1 GAAGGTCTTATGGATGG-CCGAAGGACTTACAAATCAAGAAACCCCAGAAGACTTAGTTTCTAAA
*
1179352 TCTCATTTGAAAACATCCTACACT
65 TCTCATTTGAAAACATCATACACT
* * *
1179376 GAAGGTCTTATAGATGGCCTGAAGGACTTACAAATCAAGAAACCCCAGAAGGCTTAGTTTTTAAA
1 GAAGGTCTTATGGATGGCC-GAAGGACTTACAAATCAAGAAACCCCAGAAGACTTAGTTTCT-AA
* *
1179441 ATCTCATTTGAAAATATCATGCACT
64 ATCTCATTTGAAAACATCATACACT
1179466 GAAGGTCTTATGGATGGTCCGAAGGACTTAC
1 GAAGGTCTTATGGATGG-CCGAAGGACTTAC
1179497 GCATCATGCT
Statistics
Matches: 108, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
88 2 0.02
89 53 0.49
90 51 0.47
91 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (88 bp):
GAAGGTCTTATGGATGGCCGAAGGACTTACAAATCAAGAAACCCCAGAAGACTTAGTTTCTAAAT
CTCATTTGAAAACATCATACACT
Found at i:1179682 original size:132 final size:132
Alignment explanation
Indices: 1179388--1179669 Score: 456
Period size: 132 Copynumber: 2.1 Consensus size: 132
1179378 AGGTCTTATA
* ** *
1179388 GATGGCCTGAAGGACTTACAAATCAAGAAACCCCAGAAGGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTATGAATCAAGAAACCCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
1179453 AATATCATGCACTGAAGGTCTTATGGATGGTCCGAAGGACTTACGCATCATGCTCAAAAGAATTA
66 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCAAAAGAATTA
1179518 AT
131 AT
* *
1179520 GATGGCCCGAAGGACTTATGAATCAAGAAACCCCCGATGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTATGAATCAAGAAACCCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
1179585 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCAAAAGAATTA
*
1179650 CT
131 AT
*
1179652 GATGGCTCGAAGGACTTA
1 GATGGCCCGAAGGACTTA
1179670 ATCATTAAGA
Statistics
Matches: 138, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 138 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (132 bp):
GATGGCCCGAAGGACTTATGAATCAAGAAACCCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCAAAAGAATTA
AT
Found at i:1179765 original size:43 final size:43
Alignment explanation
Indices: 1179716--1180376 Score: 405
Period size: 43 Copynumber: 15.3 Consensus size: 43
1179706 TTAGTTATCA
1179716 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
* ** * *
1179759 TCAAGAAACCCCTACATATCACGATGGTCTCTCAAGGTTTTCT
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
* ** * * * * * ** *
1179802 TCAATAAACAACTGA-AAATCAGGCTTAGT--TTCTTAGTTGTCAC
1 TCAAGAAACCCCT-ACATATCACG-ATGGTCCCTCAAACTTGTC-C
* * ** *
1179845 -CAAGGAACCCCTACATATCACGTTGGTCCCTCAAGTGTATCATCC
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAA-ACT-T-GTCC
*
1179890 ATTCCAAG-AACCCCTACATATCACGATAGTCCCTCAAACTTGTCC
1 --T-CAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
* * * *
1179935 TCAAGAAACCCCTACATATCACGATGGTCTCTCAAGCTTTTCT
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
* * * * * * ** *
1179978 TCAAGAAACCCCTAAAAATCAGGCTTAGT--TTCTTAGTTGTCAC
1 TCAAGAAACCCCTACATATCACG-ATGGTCCCTCAAACTTGTC-C
* * * *
1180021 -CAAGGAACCCCTACATATCACGTTGGTCCCTC-AAGTGTGTCA
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACT-TGTCC
* * * *
1180063 TCAAGGAACCCCTACATATCACGATGATCCCTCAATCTTATCC
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
*
1180106 TCAAAAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
* ** * *
1180149 TCAAGAAACCCCTACATATCACGATGGTCTCTCAAGTTTTTCT
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
* * * * * * * ** *
1180192 TCAAAAAAACCCCTAAAAATCAGGCTTAGT--TTCTTAGTTGTCAC
1 TC-AAGAAACCCCTACATATCACG-ATGGTCCCTCAAACTTGTC-C
* * * *
1180236 -CAATG-AACCCCTATATATCACGTTGGTCCCTC-AAGTATGTCA
1 TCAA-GAAACCCCTACATATCACGATGGTCCCTCAAACT-TGTCC
* ** * * * *
1180278 TCAAGGAACCTTTATATATCACGACGATCCCTTAAACTTGTCC
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
* * * *
1180321 TCAAGAAACCCCTACATATCACGATGGTCTCTCAAGCTTTTCT
1 TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
1180364 TCAAGAAACCCCT
1 TCAAGAAACCCCT
1180377 GAAAATCAGG
Statistics
Matches: 470, Mismatches: 117, Indels: 62
0.72 0.18 0.10
Matches are distributed among these distances:
41 13 0.03
42 72 0.15
43 311 0.66
44 31 0.07
45 8 0.02
46 3 0.01
47 1 0.00
48 27 0.06
49 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (43 bp):
TCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCC
Found at i:1180016 original size:176 final size:171
Alignment explanation
Indices: 1179712--1180162 Score: 688
Period size: 176 Copynumber: 2.6 Consensus size: 171
1179702 TTTCTTAGTT
1179712 ATCATCAAGAAACCCCTACATATCACGATGGTCCCTCAAACTTGTCCTCAAGAAACCCCTACATA
1 ATCA-CAAG-AACCCCTACATATCACGAT-GTCCCTCAAACTTGTCCTCAAGAAACCCCTACATA
* * ** *
1179777 TCACGATGGTCTCTCAAGGTTTTCTTCAATAAACAACTGAAAATCAGGCTTAGTTTCTTAGTTGT
63 TCACGATGGTCTCTCAAGCTTTTCTTCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAGTTGT
1179842 CACCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGTGTATC
128 CACCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGTGTATC
1179886 ATCCATTCCAAGAACCCCTACATATCACGATAGTCCCTCAAACTTGTCCTCAAGAAACCCCTACA
1 AT-CA---CAAGAACCCCTACATATCACGAT-GTCCCTCAAACTTGTCCTCAAGAAACCCCTACA
1179951 TATCACGATGGTCTCTCAAGCTTTTCTTCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAGTT
61 TATCACGATGGTCTCTCAAGCTTTTCTTCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAGTT
*
1180016 GTCACCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGTGTGTC
126 GTCACCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGTGTATC
* * * *
1180062 ATCA-AGGAACCCCTACATATCACGATGATCCCTCAATCTTATCCTCAAAAAACCCCTACATATC
1 ATCACAAGAACCCCTACATATCACGATG-TCCCTCAAACTTGTCCTCAAGAAACCCCTACATATC
* * * *
1180126 ACGATGGTCCCTCAAACTTGTCCTCAAGAAACCCCTA
65 ACGATGGTCTCTCAAGCTTTTCTTCAAGAAACCCCTA
1180163 CATATCACGA
Statistics
Matches: 257, Mismatches: 16, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
170 1 0.00
171 87 0.34
174 2 0.01
175 4 0.02
176 159 0.62
177 4 0.02
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (171 bp):
ATCACAAGAACCCCTACATATCACGATGTCCCTCAAACTTGTCCTCAAGAAACCCCTACATATCA
CGATGGTCTCTCAAGCTTTTCTTCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAGTTGTCAC
CAAGGAACCCCTACATATCACGTTGGTCCCTCAAGTGTATC
Found at i:1180282 original size:215 final size:214
Alignment explanation
Indices: 1179839--1180376 Score: 806
Period size: 215 Copynumber: 2.5 Consensus size: 214
1179829 GTTTCTTAGT
* * * * * *
1179839 TGTCACCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGTGTATCATCCATTCCAAGAACCCC
1 TGTCATCAAGGAACCCCTACATATCACGATGATCCCTCAA-TCT-T-ATCC--TCAAAAAACCCC
*
1179904 TACATATCACGATAGTCCCTCAAACTTGTCCTCAAGAAACCCCTACATATCACGATGGTCTCTCA
61 TACATATCACGATGGTCCCTCAAACTTGTCCTCAAGAAACCCCTACATATCACGATGGTCTCTCA
*
1179969 AGCTTTTCTTCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAGTTGTCACCAAGGAACCCCTA
126 AGCTTTTCTTCAAAAAACCCCTAAAAATCAGGCTTAGTTTCTTAGTTGTCACCAAGGAACCCCTA
*
1180034 CATATCACGTTGGTCCCTCAAGTG
191 CATATCACGTTGGTCCCTCAAGTA
1180058 TGTCATCAAGGAACCCCTACATATCACGATGATCCCTCAATCTTATCCTCAAAAAACCCCTACAT
1 TGTCATCAAGGAACCCCTACATATCACGATGATCCCTCAATCTTATCCTCAAAAAACCCCTACAT
*
1180123 ATCACGATGGTCCCTCAAACTTGTCCTCAAGAAACCCCTACATATCACGATGGTCTCTCAAGTTT
66 ATCACGATGGTCCCTCAAACTTGTCCTCAAGAAACCCCTACATATCACGATGGTCTCTCAAGCTT
* *
1180188 TTCTTCAAAAAAACCCCTAAAAATCAGGCTTAGTTTCTTAGTTGTCACCAATGAACCCCTATATA
131 TTCTTC-AAAAAACCCCTAAAAATCAGGCTTAGTTTCTTAGTTGTCACCAAGGAACCCCTACATA
1180253 TCACGTTGGTCCCTCAAGTA
195 TCACGTTGGTCCCTCAAGTA
** * * * * * *
1180273 TGTCATCAAGGAACCTTTATATATCACGACGATCCCTTAAACTTGTCCTCAAGAAACCCCTACAT
1 TGTCATCAAGGAACCCCTACATATCACGATGATCCCTCAATCTTATCCTCAAAAAACCCCTACAT
* * * *
1180338 ATCACGATGGTCTCTCAAGCTTTTCTTCAAGAAACCCCT
66 ATCACGATGGTCCCTCAAACTTGTCCTCAAGAAACCCCT
1180377 GAAAATCAGG
Statistics
Matches: 294, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
214 84 0.29
215 166 0.56
216 4 0.01
217 1 0.00
218 2 0.01
219 37 0.13
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (214 bp):
TGTCATCAAGGAACCCCTACATATCACGATGATCCCTCAATCTTATCCTCAAAAAACCCCTACAT
ATCACGATGGTCCCTCAAACTTGTCCTCAAGAAACCCCTACATATCACGATGGTCTCTCAAGCTT
TTCTTCAAAAAACCCCTAAAAATCAGGCTTAGTTTCTTAGTTGTCACCAAGGAACCCCTACATAT
CACGTTGGTCCCTCAAGTA
Found at i:1180541 original size:36 final size:36
Alignment explanation
Indices: 1180446--1180735 Score: 355
Period size: 36 Copynumber: 8.0 Consensus size: 36
1180436 TAAAATCTTC
* ** * *
1180446 TGTTTCAAGTGAAACAATCTCAAGCGAGATAAAATCTT
1 TGTTTCAAGGGAAACCGTCTCAAGGGAGACAAAA--TT
* **
1180484 CTGTTTCAAGTGAAATTGTCTCAAGGGAGACAAAATT
1 -TGTTTCAAGGGAAACCGTCTCAAGGGAGACAAAATT
* *
1180521 TGTTTCATGGGAAACCGTCTCAAGGGATACAAAATT
1 TGTTTCAAGGGAAACCGTCTCAAGGGAGACAAAATT
*
1180557 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
1 TGTTTCAAGGGAAACCGTCTCAAGGGAGACAAAATT
* *
1180593 TGTTTCGAGGGAAACCGTCTCAAGGGAGAAAAAATT
1 TGTTTCAAGGGAAACCGTCTCAAGGGAGACAAAATT
* * * *
1180629 TGTTTCGAGGGAAACGGTTTCAAGGGAGACTAAATT
1 TGTTTCAAGGGAAACCGTCTCAAGGGAGACAAAATT
*
1180665 TGTTTCAAGGGAAACGGTCTCAAGGGAGACAAAATT
1 TGTTTCAAGGGAAACCGTCTCAAGGGAGACAAAATT
* ** *
1180701 TGTTTCAAAGGAAATTGTCTCAAGGGAGATAAAAT
1 TGTTTCAAGGGAAACCGTCTCAAGGGAGACAAAAT
1180736 CTTCTGATTC
Statistics
Matches: 224, Mismatches: 27, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
36 193 0.86
37 2 0.01
39 29 0.13
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (36 bp):
TGTTTCAAGGGAAACCGTCTCAAGGGAGACAAAATT
Found at i:1180629 original size:108 final size:108
Alignment explanation
Indices: 1180409--1180774 Score: 392
Period size: 108 Copynumber: 3.3 Consensus size: 108
1180399 AAATATTGTA
* ** * * * * *
1180409 TTTCGAGCGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCAAGTGAAACAATCTCAAGCGAG
1 TTTCGAGGGAAACCGTCTCAAGGGAGACAAAA--TT-TGTTTCAAGGGAAACAGTCTCAAGGGAG
* * *
1180474 ATAAAATCTTCTGTTTCAAGTGAAATTGTCTCAAGGGAGACAAAATTTG
63 ACAAAA--TT-TGTTTCAAGGGAAATTGTCTCAAGGGAGAAAAAATTTG
* *
1180523 TTTC-ATGGGAAACCGTCTCAAGGGATACAAAATTTGTTTCAAGGGAAACTGTCTCAAGGGAGAC
1 TTTCGA-GGGAAACCGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAGTCTCAAGGGAGAC
* **
1180587 AAAATTTGTTTCGAGGGAAACCGTCTCAAGGGAGAAAAAATTTG
65 AAAATTTGTTTCAAGGGAAATTGTCTCAAGGGAGAAAAAATTTG
* * * *
1180631 TTTCGAGGGAAACGGTTTCAAGGGAGACTAAATTTGTTTCAAGGGAAACGGTCTCAAGGGAGACA
1 TTTCGAGGGAAACCGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAGTCTCAAGGGAGACA
* *
1180696 AAATTTGTTTCAAAGGAAATTGTCTCAAGGGAGATAAAATCTTCTG
66 AAATTTGTTTCAAGGGAAATTGTCTCAAGGGAGA-AAAA-ATT-TG
* ** * *
1180742 ATTCGAGGGAAACTATCTCAAGCGAGATAAAAT
1 TTTCGAGGGAAACCGTCTCAAGGGAGACAAAAT
1180775 CTTCTTTTTT
Statistics
Matches: 214, Mismatches: 33, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
108 121 0.57
109 7 0.03
110 2 0.01
111 57 0.27
112 2 0.01
113 1 0.00
114 24 0.11
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (108 bp):
TTTCGAGGGAAACCGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAGTCTCAAGGGAGACA
AAATTTGTTTCAAGGGAAATTGTCTCAAGGGAGAAAAAATTTG
Found at i:1180877 original size:76 final size:74
Alignment explanation
Indices: 1180777--1181024 Score: 352
Period size: 76 Copynumber: 3.3 Consensus size: 74
1180767 GATAAAATCT
* * * *
1180777 TCTTTTTTTAAAAAAAATAATCTTGAGTGAAATGAAATATCTTCTTTCGAGTAAAAACTGTCTCA
1 TCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT-AAATATCTT-TTTTGAGTAAAAACTGTCTCA
1180842 AGTGAGACAAA
64 AGTGAGACAAA
*
1180853 TCTTGTTTTAAGAAAAACAATCTTGAGTGAAATAACATGTCTTTTTTGAGTAAAAACTGTCTCAA
1 TCTTGTTTTAAGAAAAACAATCTTGAGTGAAATAA-ATATCTTTTTTGAGTAAAAACTGTCTCAA
*
1180918 GTGATACAAA
65 GTGAGACAAA
* * * * *
1180928 TCTTGTTTGAAGAAAAACAATCTTGAGTGAAATAAGTCTTCTTGTTTTGAGTAAGAACTGTCTTA
1 TCTTGTTTTAAGAAAAACAATCTTGAGTGAAATAAAT-ATCTT-TTTTGAGTAAAAACTGTCTCA
1180993 AGTGAGACAAA
64 AGTGAGACAAA
1181004 TCTTGTTTTAAGAAAAACAAT
1 TCTTGTTTTAAGAAAAACAAT
1181025 AAATCTTCTG
Statistics
Matches: 156, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
74 1 0.01
75 70 0.45
76 85 0.54
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (74 bp):
TCTTGTTTTAAGAAAAACAATCTTGAGTGAAATAAATATCTTTTTTGAGTAAAAACTGTCTCAAG
TGAGACAAA
Found at i:1180882 original size:36 final size:36
Alignment explanation
Indices: 1180841--1181024 Score: 136
Period size: 36 Copynumber: 4.9 Consensus size: 36
1180831 AAACTGTCTC
*
1180841 AAGTGAGACAAATCTTGTTTTAAGAAAAACAATCTT
1 AAGTGAAACAAATCTTGTTTTAAGAAAAACAATCTT
* * * ** *
1180877 GAGTGAAATAACATGTCTT-TTTTGAGTAAAAACTGTCTC
1 AAGTGAAACAA-A--TCTTGTTTTAAG-AAAAACAATCTT
* *
1180916 AAGTGATACAAATCTTGTTTGAAGAAAAACAATCTT
1 AAGTGAAACAAATCTTGTTTTAAGAAAAACAATCTT
* * * * * **
1180952 GAGTGAAATAAGTCTTCTTGTTTTGAGTAAGAACTGTCTT
1 AAGTGAAACAA---ATCTTGTTTTAAG-AAAAACAATCTT
*
1180992 AAGTGAGACAAATCTTGTTTTAAGAAAAACAAT
1 AAGTGAAACAAATCTTGTTTTAAGAAAAACAAT
1181025 AAATCTTCTG
Statistics
Matches: 107, Mismatches: 32, Indels: 18
0.68 0.20 0.11
Matches are distributed among these distances:
36 35 0.33
37 17 0.16
38 7 0.07
39 31 0.29
40 17 0.16
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (36 bp):
AAGTGAAACAAATCTTGTTTTAAGAAAAACAATCTT
Found at i:1182396 original size:27 final size:27
Alignment explanation
Indices: 1182366--1182432 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
1182356 TTACATGTGC
*
1182366 TTCTTGTTCCTTTTTCTTTTTCTTTGT
1 TTCTTGTTCCTTTTTCTTTTTCTTTCT
* * *
1182393 TTCTTTGTT-TTTTTTGTTTTTTTTTCT
1 TTC-TTGTTCCTTTTTCTTTTTCTTTCT
1182420 TT-TT-TTCCTTTTT
1 TTCTTGTTCCTTTTT
1182433 GCTCTTTGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
24 2 0.06
25 7 0.21
27 19 0.58
28 5 0.15
ACGTcount: A:0.00, C:0.13, G:0.06, T:0.81
Consensus pattern (27 bp):
TTCTTGTTCCTTTTTCTTTTTCTTTCT
Found at i:1182408 original size:17 final size:15
Alignment explanation
Indices: 1182376--1182423 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 15
1182366 TTCTTGTTCC
*
1182376 TTTTTCTTTTTCTTTG
1 TTTTT-TTTTTTTTTG
1182392 TTTCTTTGTTTTTTTTG
1 TTT-TTT-TTTTTTTTG
1182409 TTTTTTTTTCTTTTT
1 TTTTTTTTT-TTTTT
1182424 TTCCTTTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 3 0.11
16 12 0.43
17 13 0.46
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.85
Consensus pattern (15 bp):
TTTTTTTTTTTTTTG
Found at i:1182410 original size:9 final size:9
Alignment explanation
Indices: 1182376--1182425 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
1182366 TTCTTGTTCC
*
1182376 TTTTTCTTT
1 TTTTTGTTT
1182385 TTCTTTG-TT
1 TT-TTTGTTT
*
1182394 TCTTTGTTT
1 TTTTTGTTT
1182403 TTTTTGTTT
1 TTTTTGTTT
1182412 TTTTT-TCTT
1 TTTTTGT-TT
1182421 TTTTT
1 TTTTT
1182426 CCTTTTTGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
8 5 0.14
9 27 0.77
10 3 0.09
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:1182424 original size:17 final size:17
Alignment explanation
Indices: 1182382--1182423 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
1182372 TTCCTTTTTC
1182382 TTTTTCTTTGTTTCTTTG
1 TTTTT-TTTGTTTCTTTG
1182400 TTTTTTTTGTTT-TTT-
1 TTTTTTTTGTTTCTTTG
1182415 TTTCTTTTT
1 TTT-TTTTT
1182424 TTCCTTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 3 0.13
16 8 0.35
17 7 0.30
18 5 0.22
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.86
Consensus pattern (17 bp):
TTTTTTTTGTTTCTTTG
Found at i:1182431 original size:17 final size:16
Alignment explanation
Indices: 1182382--1182432 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 16
1182372 TTCCTTTTTC
*
1182382 TTTTTCTTTGTTTCTT
1 TTTTTCTTTTTTTCTT
*
1182398 TGTTTT-TTTTGTT-TT
1 T-TTTTCTTTTTTTCTT
1182413 TTTTTCTTTTTTTCCTT
1 TTTTTCTTTTTTT-CTT
1182430 TTT
1 TTT
1182433 GCTCTTTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
14 4 0.14
15 9 0.32
16 6 0.21
17 9 0.32
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTTTTCTT
Found at i:1188302 original size:44 final size:42
Alignment explanation
Indices: 1188231--1188352 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 42
1188221 TTTTTTGAAC
* * * * *
1188231 AAACGCCACAAAAGGTC-GATATCTATAGCGGCGTTTATTTCCAT
1 AAACGCCGCAAAAAGTCAGATA--TATAGCGGCGTTTA-TACAAA
* *
1188275 AAACGCCGCAAAAAGTTATGATATATAGCGGCGTTTATAGAAA
1 AAACGCCGCAAAAAGTCA-GATATATAGCGGCGTTTATACAAA
*
1188318 AAACGCCGCAAAAAGTCAGATCTATAGCGGCGTTT
1 AAACGCCGCAAAAAGTCAGATATATAGCGGCGTTT
1188353 TTGGATACAA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 16 0.24
43 19 0.28
44 28 0.42
46 4 0.06
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (42 bp):
AAACGCCGCAAAAAGTCAGATATATAGCGGCGTTTATACAAA
Found at i:1188386 original size:43 final size:42
Alignment explanation
Indices: 1188216--1188497 Score: 174
Period size: 43 Copynumber: 6.6 Consensus size: 42
1188206 ATATCTATTA
* * * * * * *
1188216 CGGCATTTTTTGAACAAACGCCACAAAAGGTCGATATCTATAG
1 CGGCGTTTTTAGAACAAACGCCGCAAAAGAT-AAGACCTATAG
*** * * * **
1188259 CGGCGTTTATTTCCATAAACGCCGCAAAAAGTTATGATATATAG
1 CGGCGTTT-TTAGAACAAACGCCGC-AAAAGATAAGACCTATAG
* * * *
1188303 CGGCGTTTATAGAAAAAACGCCGCAAAA-AGTCAGATCTATAG
1 CGGCGTTTTTAGAACAAACGCCGCAAAAGA-TAAGACCTATAG
*
1188345 CGGCGTTTTTGGATACAAACGCCGCAAAAGATAAGACCTATA-
1 CGGCGTTTTTAGA-ACAAACGCCGCAAAAGATAAGACCTATAG
* ** * * * * *
1188387 CTGGCGTTTTTAGAACAAACGTCGTTATAGGTCTA-ACCTTTTG
1 C-GGCGTTTTTAGAACAAACGCCGCAAAAGAT-AAGACCTATAG
* * *
1188430 CGGCGTTTTTAGACACAAACGCCGCAAAAGGTTAGACCTATAA
1 CGGCGTTTTTAGA-ACAAACGCCGCAAAAGATAAGACCTATAG
*
1188473 CGGCGTTTTTGGATACAAACGCCGC
1 CGGCGTTTTTAGA-ACAAACGCCGC
1188498 TAATTACCTT
Statistics
Matches: 187, Mismatches: 42, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
42 57 0.30
43 96 0.51
44 28 0.15
45 6 0.03
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
CGGCGTTTTTAGAACAAACGCCGCAAAAGATAAGACCTATAG
Found at i:1190976 original size:80 final size:79
Alignment explanation
Indices: 1190865--1191028 Score: 249
Period size: 80 Copynumber: 2.1 Consensus size: 79
1190855 ACGGAATCCC
* * *
1190865 TGCAAGTAATATGAAGGACTAAACTTCTCAATTTACATTCAGGTCAAATTGATAACAGATATTTA
1 TGCAAGTAAAATGAAGGACTAAACTTCTCAATTTACATTCAGATCAAATTGATAACAAATATTTA
1190930 CAGACCA-CTGCTAAT
66 -AGA-CAGCTGCTAAT
* *
1190945 TGCAAGTAAAATGAAGGACTAAACTTCTCAATTTTCATTCAGATCAAATTTATAACAAATATTTA
1 TGCAAGTAAAATGAAGGACTAAACTTCTCAATTTACATTCAGATCAAATTGATAACAAATATTTA
*
1191010 AGACAGCTGCTCAT
66 AGACAGCTGCTAAT
1191024 TGCAA
1 TGCAA
1191029 CATAATCTAA
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
78 2 0.03
79 15 0.19
80 60 0.78
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (79 bp):
TGCAAGTAAAATGAAGGACTAAACTTCTCAATTTACATTCAGATCAAATTGATAACAAATATTTA
AGACAGCTGCTAAT
Found at i:1193232 original size:41 final size:42
Alignment explanation
Indices: 1193186--1193348 Score: 197
Period size: 41 Copynumber: 4.0 Consensus size: 42
1193176 ACTATAGTAC
* *
1193186 ATGTGTATAACGGCGTTTGTATAAAAACGCCACTATAGTAT-
1 ATGTCTATAACGGCGTTTGTATAAAAACGCCACTAAAGTATA
* ** *
1193227 ATGTGTATAACAACGTTTGTATAAAAACGCCTCTAAAGTATA
1 ATGTCTATAACGGCGTTTGTATAAAAACGCCACTAAAGTATA
* * * *
1193269 AT-TCTATAGCGGCGTTTGTATAAAAATGCCACTAAATTATG
1 ATGTCTATAACGGCGTTTGTATAAAAACGCCACTAAAGTATA
* *
1193310 A-GTCTTTAGCGGCGTTTGTATAAAAACGCCACTAAAGTA
1 ATGTCTATAACGGCGTTTGTATAAAAACGCCACTAAAGTA
1193349 CTACTCTTTT
Statistics
Matches: 105, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
41 103 0.98
42 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (42 bp):
ATGTCTATAACGGCGTTTGTATAAAAACGCCACTAAAGTATA
Found at i:1193357 original size:41 final size:40
Alignment explanation
Indices: 1193196--1193419 Score: 195
Period size: 41 Copynumber: 5.5 Consensus size: 40
1193186 ATGTGTATAA
* * *
1193196 CGGCGTTTGTATAAAAACGCCACTATAGTAT-ATGTGTATAA
1 CGGCGTTTGTATAAAAACGCCACTAAAGTATAATCT-T-TAG
** * *
1193237 CAACGTTTGTATAAAAACGCCTCTAAAGTATAATTCTATAG
1 CGGCGTTTGTATAAAAACGCCACTAAAGTATAA-TCTTTAG
* * *
1193278 CGGCGTTTGTATAAAAATGCCACTAAATTATGAGTCTTTAG
1 CGGCGTTTGTATAAAAACGCCACTAAAGTAT-AATCTTTAG
* *
1193319 CGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTTTTG
1 CGGCGTTTGTATAAAAACGCCACTAAAGTA-TAATCTTTAG
* ** *
1193360 CGTCGTTTGT-TGAAAAACGCCACTATCG-ATGAACCTATT-G
1 CGGCGTTTGTAT-AAAAACGCCACTAAAGTAT-AATCT-TTAG
*
1193400 CGGCGTTTTTATAAAAACGC
1 CGGCGTTTGTATAAAAACGC
1193420 TGCTAACGTT
Statistics
Matches: 150, Mismatches: 25, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
39 1 0.01
40 22 0.15
41 122 0.81
42 3 0.02
43 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (40 bp):
CGGCGTTTGTATAAAAACGCCACTAAAGTATAATCTTTAG
Found at i:1193838 original size:24 final size:24
Alignment explanation
Indices: 1193811--1193883 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
1193801 CGTTCATTTA
1193811 CGTTC-GTGAACGTTCGGTTATGTT
1 CGTTCGGT-AACGTTCGGTTATGTT
* * *
1193835 CGTTCGGTTATGTTCGTTTATGTT
1 CGTTCGGTAACGTTCGGTTATGTT
* * * *
1193859 CGTTCGATTATGTTCGTTTATGTT
1 CGTTCGGTAACGTTCGGTTATGTT
1193883 C
1 C
1193884 TTTTATTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 42 0.95
25 2 0.05
ACGTcount: A:0.11, C:0.15, G:0.25, T:0.49
Consensus pattern (24 bp):
CGTTCGGTAACGTTCGGTTATGTT
Found at i:1193840 original size:14 final size:14
Alignment explanation
Indices: 1193821--1193876 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
1193811 CGTTCGTGAA
1193821 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
1193835 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
1193849 CG-T---TTATGTT
1 CGTTCGGTTATGTT
*
1193859 CGTTCGATTATGTT
1 CGTTCGGTTATGTT
1193873 CGTT
1 CGTT
1193877 TATGTTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
10 9 0.24
11 1 0.03
13 1 0.03
14 27 0.71
ACGTcount: A:0.09, C:0.14, G:0.25, T:0.52
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:1193888 original size:10 final size:10
Alignment explanation
Indices: 1193836--1193889 Score: 54
Period size: 10 Copynumber: 5.0 Consensus size: 10
1193826 GGTTATGTTC
*
1193836 GTTCGGTTAT
1 GTTCGTTTAT
1193846 GTTCGTTTAT
1 GTTCGTTTAT
1193856 GTTCGTTCGATTAT
1 GTTCG-T---TTAT
1193870 GTTCGTTTAT
1 GTTCGTTTAT
*
1193880 GTTCTTTTAT
1 GTTCGTTTAT
1193890 TTATGTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
10 27 0.71
11 1 0.03
13 1 0.03
14 9 0.24
ACGTcount: A:0.11, C:0.11, G:0.20, T:0.57
Consensus pattern (10 bp):
GTTCGTTTAT
Found at i:1193896 original size:24 final size:24
Alignment explanation
Indices: 1193822--1193883 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
1193812 GTTCGTGAAC
* *
1193822 GTTCGGTTATGTTCGTTCGGTTAT
1 GTTCGTTTATGTTCGTTCGATTAT
1193846 GTTCGTTTATGTTCGTTCGATTAT
1 GTTCGTTTATGTTCGTTCGATTAT
1193870 GTTCGTTTATGTTC
1 GTTCGTTTATGTTC
1193884 TTTTATTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.10, C:0.13, G:0.24, T:0.53
Consensus pattern (24 bp):
GTTCGTTTATGTTCGTTCGATTAT
Found at i:1194906 original size:16 final size:16
Alignment explanation
Indices: 1194885--1194957 Score: 105
Period size: 16 Copynumber: 4.7 Consensus size: 16
1194875 CCAACGTTGA
1194885 TGTTCATTTATGTTCG
1 TGTTCATTTATGTTCG
*
1194901 TGTTCATTTATGTTCA
1 TGTTCATTTATGTTCG
*
1194917 TGTTCGTTTATGTTCG
1 TGTTCATTTATGTTCG
*
1194933 TGTTCGTTTATGTTCG
1 TGTTCATTTATGTTCG
1194949 T-TT-ATTTAT
1 TGTTCATTTAT
1194958 TAAATGAACG
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
14 5 0.09
15 2 0.04
16 46 0.87
ACGTcount: A:0.12, C:0.11, G:0.18, T:0.59
Consensus pattern (16 bp):
TGTTCATTTATGTTCG
Found at i:1194929 original size:10 final size:10
Alignment explanation
Indices: 1194879--1194953 Score: 52
Period size: 10 Copynumber: 7.7 Consensus size: 10
1194869 GGGTCTCCAA
*
1194879 CGTTGATGTT
1 CGTTTATGTT
*
1194889 CATTTATGTT
1 CGTTTATGTT
1194899 CGTGTTCAT-TT
1 CGT-TT-ATGTT
* *
1194910 ATGTTCATGTT
1 -CGTTTATGTT
1194921 CGTTTATGTT
1 CGTTTATGTT
1194931 CG----TGTT
1 CGTTTATGTT
1194937 CGTTTATGTT
1 CGTTTATGTT
1194947 CGTTTAT
1 CGTTTAT
1194954 TTATTAAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
6 6 0.12
10 33 0.66
11 7 0.14
12 4 0.08
ACGTcount: A:0.12, C:0.12, G:0.20, T:0.56
Consensus pattern (10 bp):
CGTTTATGTT
Found at i:1197194 original size:14 final size:13
Alignment explanation
Indices: 1197162--1197194 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
1197152 CTAGTTTCTG
1197162 GGTTTTTCTTAGA
1 GGTTTTTCTTAGA
1197175 GGTTTTTCTTAGA
1 GGTTTTTCTTAGA
*
1197188 GGCTTTT
1 GGTTTTT
1197195 AACGGGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.09, G:0.24, T:0.55
Consensus pattern (13 bp):
GGTTTTTCTTAGA
Found at i:1198482 original size:21 final size:21
Alignment explanation
Indices: 1198440--1198482 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1198430 TTTCTGGGCT
*
1198440 AGGGGAATCGATACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
1198461 AGGGGAATTGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
1198482 A
1 A
1198483 ACGAATATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.19
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:1199215 original size:103 final size:103
Alignment explanation
Indices: 1199027--1199347 Score: 561
Period size: 103 Copynumber: 3.1 Consensus size: 103
1199017 GTAGAGGGTC
* *
1199027 TATGTGGTCCTTCAGGACATATATGTATTCTTTGGAACATATGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1199092 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
* *
1199130 TAAGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
1199195 TTAATCCTTGGTATACGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
* *
1199233 TATGTGGTCATTCGAGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1199298 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
1199336 TATGTGGTCCTT
1 TATGTGGTCCTT
1199348 ATGGACATTA
Statistics
Matches: 203, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 203 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:1199426 original size:23 final size:23
Alignment explanation
Indices: 1199363--1199415 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
1199353 CATTATTATA
1199363 TGGCACTCCGGTGCAATTCTACG
1 TGGCACTCCGGTGCAATTCTACG
*
1199386 CGGCACTCCGGTGCAATTCTACG
1 TGGCACTCCGGTGCAATTCTACG
1199409 TGGCACT
1 TGGCACT
1199416 TGGGTGTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.17, C:0.32, G:0.26, T:0.25
Consensus pattern (23 bp):
TGGCACTCCGGTGCAATTCTACG
Found at i:1205504 original size:21 final size:21
Alignment explanation
Indices: 1205462--1205504 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
1205452 TTTCTGGGCT
*
1205462 AGGGGAATCGATACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
1205483 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
1205504 A
1 A
1205505 ACGAATATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.23, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:1205891 original size:23 final size:23
Alignment explanation
Indices: 1205861--1205916 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
1205851 TATGGTACTA
1205861 CGGTGCAATTCTACGCGGCACTC
1 CGGTGCAATTCTACGCGGCACTC
* *
1205884 CGGTGCAATTCTACGTGGCACTT
1 CGGTGCAATTCTACGCGGCACTC
*
1205907 AGGTGCAATT
1 CGGTGCAATT
1205917 ATATGAGCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
CGGTGCAATTCTACGCGGCACTC
Done.