Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008983.1 Hibiscus syriacus cultivar Beakdansim tig00112347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1350231
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 7
Found at i:651869 original size:121 final size:121
Alignment explanation
Indices: 651644--652117 Score: 674
Period size: 121 Copynumber: 4.0 Consensus size: 121
651634 TAACATAAAA
* *
651644 ATATATATTTATCTCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTGGCCA
1 ATATA-ATTTATCTCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCA
* * *
651709 GTTTGACTTATATATGCTATCAATTTAGTCCTAATTTTAATAAATTAAAATTACTTT
65 CTTTTACTTATATATTCTATCAATTTAGTCCTAATTTTAATAAATTAAAATTACTTT
* *
651766 ATATAATTTGTCTCATCTTAATTTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCAC
1 ATATAATTTATCTCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCAC
* * *
651831 TTTTACTGATATATTCTATCAATTTAGTTCTAATTTTAAAAAATTAAAATTACTTT
66 TTTTACTTATATATTCTATCAATTTAGTCCTAATTTTAATAAATTAAAATTACTTT
* * *
651887 ATATATTTTATCCCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTGGTCAC
1 ATATAATTTATCTCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCAC
* * * *
651952 TTTTACTTTTATATTCTATCAATTTAGTCGT-A----AA-AAAGTAAAATTAATTT
66 TTTTACTTATATATTCTATCAATTTAGTCCTAATTTTAATAAATTAAAATTACTTT
* * * **
652002 ATATATTTTATCTCATCTTAAATTTTAAGATTTAATAAAATTGATATAATTACGTATTTCGTCA-
1 ATATAATTTATCTCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCAC
*
652066 TTTCTACTTATATATTCTATCAATTTGGTCCTAATTTTAATAAATTAAAATT
66 TTT-TACTTATATATTCTATCAATTTAGTCCTAATTTTAATAAATTAAAATT
652118 GTCATGTCAT
Statistics
Matches: 314, Mismatches: 31, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
114 3 0.01
115 97 0.31
116 3 0.01
120 3 0.01
121 203 0.65
122 5 0.02
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (121 bp):
ATATAATTTATCTCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCAC
TTTTACTTATATATTCTATCAATTTAGTCCTAATTTTAATAAATTAAAATTACTTT
Found at i:652083 original size:236 final size:240
Alignment explanation
Indices: 651644--652117 Score: 706
Period size: 236 Copynumber: 2.0 Consensus size: 240
651634 TAACATAAAA
*
651644 ATATATATTTATCTCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTGGCCA
1 ATATATATTTATCCCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTGGCCA
* * *
651709 GTTTGACTTATATATGCTATCAATTTAGTCCTAATTTTAATAAATTAAAATTACTTTATATAATT
66 CTTTGACTTATATATGCTATCAATTTAGTCCTAA---TAATAAAGTAAAATTAATTTATATAATT
* *
651774 TGTCTCATCTTAATTTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCACTTTTACTG
128 TATCTCATCTTAAATTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCACTTTTACTG
*
651839 ATATATTCTATCAATTTAGTTCTAATTTTAAAAAATTAAAATTACTTT
193 ATATATTCTATCAATTTAGTCCTAATTTTAAAAAATTAAAATTACTTT
*
651887 ATATAT-TTTATCCCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTGGTCA
1 ATATATATTTATCCCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTGGCCA
* * * * *
651951 CTTTTACTTTTATATTCTATCAATTTAGTCGT-A-AA-AAAGTAAAATTAATTTATATATTTTAT
66 CTTTGACTTATATATGCTATCAATTTAGTCCTAATAATAAAGTAAAATTAATTTATATAATTTAT
* ** *
652013 CTCATCTTAAATTTTAAGATTTAATAAAATTGATATAATTACGTATTTCGTCA-TTTCTACTTAT
131 CTCATCTTAAATTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCACTTT-TACTGAT
* *
652077 ATATTCTATCAATTTGGTCCTAATTTTAATAAATTAAAATT
195 ATATTCTATCAATTTAGTCCTAATTTTAAAAAATTAAAATT
652118 GTCATGTCAT
Statistics
Matches: 211, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
235 3 0.01
236 116 0.55
237 2 0.01
241 1 0.00
242 83 0.39
243 6 0.03
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (240 bp):
ATATATATTTATCCCATCTTAACTTTTAAAATTTAATAAAATTGATATAATTACACATTTGGCCA
CTTTGACTTATATATGCTATCAATTTAGTCCTAATAATAAAGTAAAATTAATTTATATAATTTAT
CTCATCTTAAATTTTAAAATTTAATAAAATTGATATAATTACACATTTCGTCACTTTTACTGATA
TATTCTATCAATTTAGTCCTAATTTTAAAAAATTAAAATTACTTT
Found at i:655810 original size:18 final size:19
Alignment explanation
Indices: 655764--655810 Score: 80
Period size: 18 Copynumber: 2.6 Consensus size: 19
655754 ATAATAATAC
655764 TATTTCATTTATGTATATT
1 TATTTCATTTATGTATATT
655783 TA-TTCATTTATGTATATT
1 TATTTCATTTATGTATATT
655801 TATTTC-TTTA
1 TATTTCATTTA
655811 CTTACAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 22 0.81
19 5 0.19
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (19 bp):
TATTTCATTTATGTATATT
Found at i:657384 original size:120 final size:118
Alignment explanation
Indices: 657248--657673 Score: 603
Period size: 120 Copynumber: 3.6 Consensus size: 118
657238 TTGATAGGAT
* *
657248 GTAAAAGTGACCAAATGTATAATTATATCAATTTTATTAAATTTTAAAAGTTAAGATAAGATAAA
1 GTAAAAGTGACCAAATGTGTAATTATATCAATTTTATTAAATTTTAAAAGTTAAGATGAGAT--A
* *
657313 AAAAATATAAATTAATAATTTATTAAAATTATGACTAAATTGATAGAATATATAA
64 AAATATATAAATTAATAATTTATTAAAATTAGGACTAAATTGATAGAATATATAA
* * *
657368 GTAAAAGTGACGAAATGTATAATTTTATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAA
1 GTAAAAGTGACCAAATGTGTAATTATATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAA
* * *
657433 ATATATAAATTAAT--TTTAATT---TTTACGACTAAATTGATAGAATATAAAA
66 ATATATAAATTAATAATTT-ATTAAAATTAGGACTAAATTGATAGAATATATAA
* *
657482 GTAGAAGTGACCAAATGTGTAATTATATAAATTTT-TTAAATTTTAAAAGTTAAGATGAGATAAA
1 GTAAAAGTGACCAAATGTGTAATTATATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAA
* *
657546 ATATATAAAATAGTTCGAATTTATTAAAATTAGGACTAAATTGATAGAATATATAA
66 ATATATAAATTA-AT--AATTTATTAAAATTAGGACTAAATTGATAGAATATATAA
* * *
657602 GTTAAATTGACCAAATGTGTAATTAGATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAA
1 GTAAAAGTGACCAAATGTGTAATTATATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAA
657667 ATATATA
66 ATATATA
657674 TTTTTATGTT
Statistics
Matches: 274, Mismatches: 22, Indels: 19
0.87 0.07 0.06
Matches are distributed among these distances:
113 40 0.15
114 56 0.20
116 3 0.01
117 6 0.02
118 19 0.07
120 114 0.42
121 36 0.13
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.37
Consensus pattern (118 bp):
GTAAAAGTGACCAAATGTGTAATTATATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAA
ATATATAAATTAATAATTTATTAAAATTAGGACTAAATTGATAGAATATATAA
Found at i:657634 original size:234 final size:227
Alignment explanation
Indices: 657100--657673 Score: 814
Period size: 234 Copynumber: 2.5 Consensus size: 227
657090 AAATTAATTT
* * *
657100 TAATTTTTTAAAATTAGGTA-TAAATTGATAGAATATATAAG-TACAAGTGATGAAATTTGTAAT
1 TAATTTATTAAAATTAGG-ACTAAATTGATAGAATATATAAGTTA-AAGTGACGAAATGTGTAAT
* *
657163 TATATTAATTTTATTAAATTTTAAAAGCTAAGATGAGATAAAATATATAAATTAATTTTAATTTT
64 TATATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAAATATATAAATTAATTTTAATTTT
** *
657228 TATTACTAAATTGATAGGATGTAAAAGTGACCAAATGTATAATTATATCAATTTTATTAAATTTT
129 TACGACTAAATTGATAGGATGTAAAAGTGACCAAATGTATAATTATATAAATTTTATTAAATTTT
*
657293 AAAAGTTAAGATAAGATAAAAAAAATATAAATTAA
194 AAAAGTTAAGATAAGAT-AAAAAAATATAAAATAA
* * * *
657328 TAATTTATTAAAATTATGACTAAATTGATAGAATATATAAGTAAAAGTGACGAAATGTATAATTT
1 TAATTTATTAAAATTAGGACTAAATTGATAGAATATATAAGTTAAAGTGACGAAATGTGTAATTA
657393 TATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAAATATATAAATTAATTTTAATTTTTA
66 TATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAAATATATAAATTAATTTTAATTTTTA
* * *
657458 CGACTAAATTGATAGAATATAAAAGTAGAAGTGACCAAATGTGTAATTATATAAATTTT-TTAAA
131 CGACTAAATTGATAG--GAT----GTAAAAGTGACCAAATGTATAATTATATAAATTTTATTAAA
* * *
657522 TTTTAAAAGTTAAGATGAGAT-AAAATATATAAAATAGT
190 TTTTAAAAGTTAAGATAAGATAAAAAAATATAAAATA-A
* *
657560 TCGAATTTATTAAAATTAGGACTAAATTGATAGAATATATAAGTTAAATTGACCAAATGTGTAAT
1 T--AATTTATTAAAATTAGGACTAAATTGATAGAATATATAAGTTAAAGTGACGAAATGTGTAAT
*
657625 TAGATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAAATATATA
64 TATATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAAATATATA
657674 TTTTTATGTT
Statistics
Matches: 309, Mismatches: 26, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
227 1 0.00
228 130 0.42
229 1 0.00
230 2 0.01
231 13 0.04
232 1 0.00
233 25 0.08
234 136 0.44
ACGTcount: A:0.48, C:0.03, G:0.11, T:0.38
Consensus pattern (227 bp):
TAATTTATTAAAATTAGGACTAAATTGATAGAATATATAAGTTAAAGTGACGAAATGTGTAATTA
TATCAATTTTATTAAATTTTAAAAGTTAAGATGAGATAAAATATATAAATTAATTTTAATTTTTA
CGACTAAATTGATAGGATGTAAAAGTGACCAAATGTATAATTATATAAATTTTATTAAATTTTAA
AAGTTAAGATAAGATAAAAAAATATAAAATAA
Found at i:657827 original size:28 final size:28
Alignment explanation
Indices: 657773--657832 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
657763 ATTAAGATAA
* **
657773 AAATAAAATATATATTTTAAAGTTAAAAT
1 AAATAAAATATATATATTAAAAAT-AAAT
*
657802 AAATAAATTAT-TATATTAAAAATAAAT
1 AAATAAAATATATATATTAAAAATAAAT
657829 AAAT
1 AAAT
657833 TTTTATAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 8 0.30
28 9 0.33
29 10 0.37
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (28 bp):
AAATAAAATATATATATTAAAAATAAAT
Found at i:657843 original size:19 final size:22
Alignment explanation
Indices: 657795--657839 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
657785 TATTTTAAAG
657795 TTAAAATAAATAAATTATTATA
1 TTAAAATAAATAAATTATTATA
*
657817 TTAAAAATAAATAAATTTTTATA
1 TT-AAAATAAATAAATTATTATA
657840 AAATCAAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TTAAAATAAATAAATTATTATA
Found at i:668251 original size:23 final size:22
Alignment explanation
Indices: 668207--668265 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 22
668197 TTTACTATTA
668207 AATATTTTTAAT-TTATCTAAAT
1 AATA-TTTTAATATTATCTAAAT
668229 AATATTTTAATATTAATCTAAAT
1 AATATTTTAATATT-ATCTAAAT
*
668252 AGTATTTTAATATT
1 AATATTTTAATATT
668266 TTTAATTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 7 0.21
22 6 0.18
23 21 0.62
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (22 bp):
AATATTTTAATATTATCTAAAT
Found at i:668288 original size:30 final size:33
Alignment explanation
Indices: 668228--668295 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 33
668218 TTTATCTAAA
*
668228 TAATA-TTTTAATATTAATCTAAATAGTA-TTT
1 TAATATTTTTAATATTAATCTAAATACTATTTT
*
668259 TAATATTTTTAAT-TT-ATCTAGATACTATTTT
1 TAATATTTTTAATATTAATCTAAATACTATTTT
668290 TAATAT
1 TAATAT
668296 ATCTTTTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 10 0.30
31 16 0.48
32 7 0.21
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.54
Consensus pattern (33 bp):
TAATATTTTTAATATTAATCTAAATACTATTTT
Found at i:671312 original size:64 final size:63
Alignment explanation
Indices: 671236--671357 Score: 149
Period size: 64 Copynumber: 1.9 Consensus size: 63
671226 TACTATGATC
* **
671236 ATAAATCGTAAAATGATATTATACAATATAAAAATA-TTAT-AAAATAATATTAACATAACAACA
1 ATAAATCATAAAA-GATAAAATACAA-ATAAAAATATTTATAAAAATAATATTAACATAACAACA
* * *
671299 ATAAATCCATAAAAGGTAAAATACAACTACAAATATTTATAAAAATAATATTAACATAA
1 ATAAAT-CATAAAAGATAAAATACAAATAAAAATATTTATAAAAATAATATTAACATAA
671358 TAATCAAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
62 7 0.14
63 19 0.38
64 24 0.48
ACGTcount: A:0.59, C:0.09, G:0.03, T:0.29
Consensus pattern (63 bp):
ATAAATCATAAAAGATAAAATACAAATAAAAATATTTATAAAAATAATATTAACATAACAACA
Found at i:688287 original size:20 final size:20
Alignment explanation
Indices: 688235--688291 Score: 87
Period size: 22 Copynumber: 2.8 Consensus size: 20
688225 TCGATACTGA
*
688235 TAGGGGTATCGATACCATAG
1 TAGGGGTATCGATACCACAG
688255 TAGGGTAGTATCGATACCACAG
1 TAGGG--GTATCGATACCACAG
688277 TAGGGGTATCGATAC
1 TAGGGGTATCGATAC
688292 TGAACGACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
20 15 0.44
22 19 0.56
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (20 bp):
TAGGGGTATCGATACCACAG
Found at i:688685 original size:28 final size:28
Alignment explanation
Indices: 688649--688745 Score: 74
Period size: 28 Copynumber: 3.4 Consensus size: 28
688639 AGGAAATCAT
688649 ACTAAGTGTATGGATTTCAAGATAGAGC
1 ACTAAGTGTATGGATTTCAAGATAGAGC
* ** *
688677 ACTAAGTGTGCTAAAATTAT-AAGGA-A-ATC
1 ACTAAGTGT-AT-GGATT-TCAA-GATAGAGC
*
688706 ATACTAAGTGTATGGATTTCTAGATAGAGC
1 --ACTAAGTGTATGGATTTCAAGATAGAGC
688736 ACTAAGTGTA
1 ACTAAGTGTA
688746 CTAAAATGAT
Statistics
Matches: 51, Mismatches: 9, Indels: 18
0.65 0.12 0.23
Matches are distributed among these distances:
28 22 0.43
29 8 0.16
30 9 0.18
31 12 0.24
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (28 bp):
ACTAAGTGTATGGATTTCAAGATAGAGC
Found at i:688693 original size:59 final size:59
Alignment explanation
Indices: 688616--688958 Score: 446
Period size: 59 Copynumber: 5.9 Consensus size: 59
688606 TAAAAAAAGG
* *
688616 GCACTAAGTGTGCCAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCAAGATAGA
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
* *
688675 GCACTAAGTGTGCTAAAATTATAAGGAAATCATACTAAGTGTATGGATTTCTAGATAGA
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
*
688734 GCACTAAGTGTACTAAAATGATAAGG-AATACATACTAAGTGTATGGATTTCCAGATAGA
1 GCACTAAGTGTGCTAAAATGATAAGGAAAT-CATACTAAGTGTATGGATTTCCAGATAGA
** * * *
688793 GCACTTCGTGTGCTAAAATGA-GAGAAAAATCATACTAAGTGTATGGATTTCCAGATAGG
1 GCACTAAGTGTGCTAAAATGATAAG-GAAATCATACTAAGTGTATGGATTTCCAGATAGA
** * **
688852 GCACTTCGTGTGCTAAAATGATAGGGAAATCATACTAAGTGTATAAATTT-C---TAGA
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
* * * * *
688907 TCACTAAGTGTTCTAAAATGATAAGGAAATCATACTAATTATATGAATTTCC
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCC
688959 TATGAAATTT
Statistics
Matches: 253, Mismatches: 26, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
55 45 0.18
56 1 0.00
58 6 0.02
59 197 0.78
60 4 0.02
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (59 bp):
GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
Found at i:689364 original size:22 final size:23
Alignment explanation
Indices: 689338--689380 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
689328 TGTTTATGTA
* *
689338 TTTAAGTTAA-TATATGTTTTCT
1 TTTAAGTGAATTAAATGTTTTCT
689360 TTTAAGTGAATTAAATGTTTT
1 TTTAAGTGAATTAAATGTTTT
689381 ATAAAATGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (23 bp):
TTTAAGTGAATTAAATGTTTTCT
Found at i:695197 original size:95 final size:95
Alignment explanation
Indices: 695069--695291 Score: 243
Period size: 95 Copynumber: 2.3 Consensus size: 95
695059 ACCGAACGAT
* *
695069 GTAGTATCGATACCATGGTAAGGGTATCTATACCAGGAAACATCGAACCTAATGTTGGTATCGAT
1 GTAGTATCGATACCATGATAAGGGTATCGATACCAGGAAACATCGAACCTAATGTTGGTATCGAT
* * *
695134 ATCGGA-GGGGGGTATCGGTACCATAACATA
66 A-CGGATAGGGGGTATCGATACCATAACAGA
* * * * ** * *
695164 GTAGTATCGATACCGTTATGAGTGTATCGATACCAGGCCACATCGAAGCTAATTTTGGTATCGAT
1 GTAGTATCGATACCATGATAAGGGTATCGATACCAGGAAACATCGAACCTAATGTTGGTATCGAT
* ** *
695229 ACTGATAGGGGGTATCGATACCATAGTAGG
66 ACGGATAGGGGGTATCGATACCATAACAGA
* *
695259 GTAGTATCGATACCA-CAGTAGGGGTATCGATAC
1 GTAGTATCGATACCATGA-TAAGGGTATCGATAC
695292 TGAATGGCCA
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
94 4 0.04
95 100 0.96
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (95 bp):
GTAGTATCGATACCATGATAAGGGTATCGATACCAGGAAACATCGAACCTAATGTTGGTATCGAT
ACGGATAGGGGGTATCGATACCATAACAGA
Found at i:695260 original size:19 final size:20
Alignment explanation
Indices: 695220--695291 Score: 85
Period size: 22 Copynumber: 3.5 Consensus size: 20
695210 AGCTAATTTT
*
695220 GGTATCGATACTGATAG--GG
1 GGTATCGATAC-CATAGTAGG
695239 GGTATCGATACCATAGTAGG
1 GGTATCGATACCATAGTAGG
*
695259 GTAGTATCGATACCACAGTAGG
1 G--GTATCGATACCATAGTAGG
695281 GGTATCGATAC
1 GGTATCGATAC
695292 TGAATGGCCA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.09
19 11 0.23
20 13 0.28
22 19 0.40
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (20 bp):
GGTATCGATACCATAGTAGG
Found at i:695688 original size:59 final size:59
Alignment explanation
Indices: 695617--695954 Score: 451
Period size: 59 Copynumber: 5.9 Consensus size: 59
695607 TATAAAAAGG
*
695617 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCAAGATAGA
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
*
695676 GCACTAAGTGTGCTAAAATGATAAGGAAATCATATTAAGTGTATGGATTTCCAGATAGA
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
*
695735 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGG
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
** * * * *
695794 GCACTTCGTGTGCTAAAATGA-GAGGGAA--AT-C--A---TATGGATTTCTAGATAGG
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
** * * * *
695844 GCACTTCGTGTGCTAAAATGATAGGGAAATTATACTATGTGTATGAATTTCCAGATAGA
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
* * *
695903 GCACTAAGTGTGCTAAAATTATAAGGAAATCATACTAATTGTATGAATTTCC
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCC
695955 TATGGAATTT
Statistics
Matches: 247, Mismatches: 23, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
50 38 0.15
51 4 0.02
53 3 0.01
54 1 0.00
55 1 0.00
56 2 0.01
58 5 0.02
59 193 0.78
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (59 bp):
GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGA
Found at i:695825 original size:118 final size:116
Alignment explanation
Indices: 695617--695954 Score: 447
Period size: 109 Copynumber: 2.9 Consensus size: 116
695607 TATAAAAAGG
*
695617 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCAAGATAGAGCACTA
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTA
695682 AGTGTGCTAAAATGATAAGGAAATCATATTAAGTGTATGGATTTCCAGATAGA
66 AGTGTGCTAAAATGATAAGGAAATCATA-TAA-TGTATGGATTTCCAGATAGA
* *
695735 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGGGCACTT
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTA
* * * * *
695800 CGTGTGCTAAAATGAGAGGGAAATC-----A--TATGGATTTCTAGATAGG
66 AGTGTGCTAAAATGATAAGGAAATCATATAATGTATGGATTTCCAGATAGA
** * * * *
695844 GCACTTCGTGTGCTAAAATGATAGGGAAATTATACTATGTGTATGAATTTCCAGATAGAGCACTA
1 GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTA
* *
695909 AGTGTGCTAAAATTATAAGGAAATCATACTAATTGTATGAATTTCC
66 AGTGTGCTAAAATGATAAGGAAATCATA-TAA-TGTATGGATTTCC
695955 TATGGAATTT
Statistics
Matches: 189, Mismatches: 22, Indels: 18
0.83 0.10 0.08
Matches are distributed among these distances:
109 94 0.50
112 1 0.01
115 1 0.01
118 93 0.49
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (116 bp):
GCACTAAGTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTA
AGTGTGCTAAAATGATAAGGAAATCATATAATGTATGGATTTCCAGATAGA
Found at i:695851 original size:50 final size:50
Alignment explanation
Indices: 695776--695873 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
695766 ATACTAAGTG
695776 TATGGATTTCCAGATAGGGCACTTCGTGTGCTAAAATGAGAGGGAAATCA
1 TATGGATTTCCAGATAGGGCACTTCGTGTGCTAAAATGAGAGGGAAATCA
* *
695826 TATGGATTTCTAGATAGGGCACTTCGTGTGCTAAAATGATAGGGAAAT
1 TATGGATTTCCAGATAGGGCACTTCGTGTGCTAAAATGAGAGGGAAAT
695874 TATACTATGT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.29
Consensus pattern (50 bp):
TATGGATTTCCAGATAGGGCACTTCGTGTGCTAAAATGAGAGGGAAATCA
Found at i:696373 original size:22 final size:24
Alignment explanation
Indices: 696337--696389 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
696327 CATCTCTTTT
* *
696337 TGTTTGTCTATTTAAGTTAA-TATA
1 TGTTT-TCTATTTAAGTGAATTAAA
696361 TGTTTTCT-TTTAAGTGAATTAAA
1 TGTTTTCTATTTAAGTGAATTAAA
696384 TGTTTT
1 TGTTTT
696390 ATAAAATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 12 0.46
24 5 0.19
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (24 bp):
TGTTTTCTATTTAAGTGAATTAAA
Found at i:701058 original size:22 final size:22
Alignment explanation
Indices: 701030--701074 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
701020 AATGTCTAGT
701030 TCCCAAGAGAAGAGGACTCTTC
1 TCCCAAGAGAAGAGGACTCTTC
701052 TCCCAAGAGAAGAGGACTCTTC
1 TCCCAAGAGAAGAGGACTCTTC
701074 T
1 T
701075 AACTTCGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (22 bp):
TCCCAAGAGAAGAGGACTCTTC
Found at i:704369 original size:23 final size:23
Alignment explanation
Indices: 704343--704390 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
704333 ATAAAGTACA
* *
704343 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAACGCTTAT
**
704366 ATAATGTAATAGGTAACGCTTAT
1 ATAACATAATAGGTAACGCTTAT
704389 AT
1 AT
704391 TTACCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAACGCTTAT
Found at i:704843 original size:23 final size:23
Alignment explanation
Indices: 704808--704880 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
704798 ATACTTTACA
*
704808 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
704831 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
704854 ATATAAGCGCTACCTAATACATT
1 ATATAAGCGCTACCTATTACATT
704877 ATAT
1 ATAT
704881 TTTTACTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:705274 original size:23 final size:23
Alignment explanation
Indices: 705248--705310 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
705238 ATATAACAAC
705248 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
705271 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
705294 TACCTATTACATCATAT
1 TACCTATTACATTATAT
705311 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:705709 original size:23 final size:23
Alignment explanation
Indices: 705683--705741 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
705673 AACCACTACC
705683 TATTACATTATATAAACGATACA
1 TATTACATTATATAAACGATACA
* * *
705706 TATTACATTATATAAGCGCTACC
1 TATTACATTATATAAACGATACA
*
705729 TATTACATCATAT
1 TATTACATTATAT
705742 TTTTACCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (23 bp):
TATTACATTATATAAACGATACA
Found at i:705757 original size:431 final size:430
Alignment explanation
Indices: 704456--706804 Score: 4378
Period size: 431 Copynumber: 5.5 Consensus size: 430
704446 TATTACATTA
*
704456 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
* *
704521 TTATATTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCGCCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
704586 ATTTGCACAAAAAATTATTTGATTGTTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATT
130 ATTTGCACAAAAAATTATTTGATTG-TTTTGATATTTTATAAAATATTATTTAGAATTTTTAATT
*
704651 TAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTACAATTACTAAATTAATA
194 TAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
*
704716 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTAAAAAAAGTATGGACAC
259 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
* * * *
704781 TTTTATAAAAATGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCT
324 TTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
* * *
704846 ATTACATTATATAAGCGCTACCTAATACATTATATTTTTACT
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
704888 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
* * *
704953 TTATGTTTCCATTTTTTTAATAGTGTTTTATGTTTTCCATCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
705018 TTTGCACAAAAAATTATTTGATTGTTTTGATACTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
705083 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
705148 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTAAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
*
705213 TTATAAAAAGGATAGACACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
705278 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
705318 TATTATATTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
705383 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
705448 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
705513 ATAATAATATATATCGTAACGTAAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
196 ATAATAATATATATCGTAACGT-AAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
* *
705578 CTTAAACCTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATTGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
*
705643 TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACATA
325 TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
705708 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
705749 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAAAGATCGATACTTCTTTTAAAGTTATGTAA
1 TATTATATTGAAAGTGTCCATACTTTTTAT-AAAAAGGATCGATACTTCTTTTAAAGTTATGTAA
705814 TTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
65 TTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
705879 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
705944 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
706009 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
706074 TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
706139 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
706180 TATTATATTGAAAGTGTTCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
706245 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
706310 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATTTTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
706375 AATAAT-A-ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
* *
706438 CTTAAAACTCACTCAAAAGATAATCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATTGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
706503 TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
706568 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
706609 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
706674 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
706739 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
706804 A
196 A
706805 CAACATTAAC
Statistics
Matches: 1875, Mismatches: 39, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
428 119 0.06
429 300 0.16
430 522 0.28
431 674 0.36
432 260 0.14
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (430 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
TTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
Found at i:706136 original size:23 final size:23
Alignment explanation
Indices: 706110--706172 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
706100 ATATAACCAC
706110 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
706133 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
706156 TACCTATTACATCATAT
1 TACCTATTACATTATAT
706173 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:706565 original size:23 final size:23
Alignment explanation
Indices: 706539--706601 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
706529 ATATAACCAC
706539 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
706562 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
706585 TACCTATTACATCATAT
1 TACCTATTACATTATAT
706602 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:707078 original size:39 final size:39
Alignment explanation
Indices: 707024--707109 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
707014 CAAGTTGTAG
*
707024 ATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* *
707063 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
707102 ATTTTGAT
1 ATTTTGAT
707110 GAGCATCGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:707390 original size:18 final size:18
Alignment explanation
Indices: 707367--707403 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
707357 CGAAATATAT
707367 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
707385 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
707403 A
1 A
707404 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:707857 original size:23 final size:23
Alignment explanation
Indices: 707831--707903 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
707821 ATATTTTACA
*
707831 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
707854 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
707877 ATATAAGCGCTACCTAATACATT
1 ATATAAGCGCTACCTATTACATT
707900 ATAT
1 ATAT
707904 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:708298 original size:23 final size:23
Alignment explanation
Indices: 708272--708334 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
708262 ATATAACAAC
708272 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
708295 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
708318 TACCTATTACATCATAT
1 TACCTATTACATTATAT
708335 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:708676 original size:430 final size:429
Alignment explanation
Indices: 707597--708965 Score: 2562
Period size: 431 Copynumber: 3.2 Consensus size: 429
707587 AAGTAATTTG
*
707597 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
1 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
707662 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATT
66 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATT
707727 ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
131 ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
* * *
707792 AAGTATGGACACTTTTATAAAAATGATAGATATTTTACAATATAAGCACTACCTATTACATTATA
196 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAA-CACTACCTATTACATTATA
* * *
707857 TAAACGCTACCTATTACATTATATAAGCGCTACCTAATACATTATATTTTTACCTATTATATTGA
260 TAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
707922 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCCA
325 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTT-CA
* *
707987 TTTTTTTTAATAGTGTTTTATGTTTTCCACCTACAATATTA
389 ATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
* *
708028 ATTTAATAATTTTATTTGCACAAAAAATTATTTGATTGTTTTGATACTTTATAAAATATTATTTA
1 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
708093 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATT
66 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATT
708158 ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
131 ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
708223 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACAACTACCTATTACATTATA
196 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAAC-ACTACCTATTACATTATA
708288 TAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
260 TAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
708353 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
325 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
708418 TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
390 TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
708458 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
1 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
* *
708523 GAATTTTTAATTTAATAATATTATATATCGTAACGTAAAAAATAAATCATTAGATGCCTATAATT
66 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATT
708588 ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
131 ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
*
708653 AAGTATTGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
196 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAA-CACTACCTATTACATTATA
708718 TAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATA-TTTTACCTATTATATTGA
260 TAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
708782 AAGTGTCCATACTTTTTAT-AAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
325 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
708846 TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
390 TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
708886 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
1 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
708951 GAATTTTTAATTTAA
66 GAATTTTTAATTTAA
708966 CAACATTAAC
Statistics
Matches: 920, Mismatches: 16, Indels: 7
0.98 0.02 0.01
Matches are distributed among these distances:
428 165 0.18
429 37 0.04
430 341 0.37
431 377 0.41
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (429 bp):
ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
GAATTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATT
ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACACTACCTATTACATTATAT
AAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAA
AGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAAT
TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
Found at i:708728 original size:23 final size:23
Alignment explanation
Indices: 708702--708764 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
708692 ATATAACCAC
708702 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
708725 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
708748 TACCTATTACATCATAT
1 TACCTATTACATTATAT
708765 TTTACCTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:709235 original size:39 final size:39
Alignment explanation
Indices: 709181--709266 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
709171 CAAGTTGTAG
*
709181 ATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* *
709220 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
709259 ATTTTGAT
1 ATTTTGAT
709267 GAGCATCGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:709544 original size:18 final size:18
Alignment explanation
Indices: 709521--709557 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
709511 CGAAATATAT
709521 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
709539 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
709557 A
1 A
709558 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:710008 original size:23 final size:23
Alignment explanation
Indices: 709982--710053 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
709972 ATATTTTACA
*
709982 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
710005 ATATAAACGCTA-CTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
710027 ATATAAGCGCTACCTAATACATT
1 ATATAAGCGCTACCTATTACATT
710050 ATAT
1 ATAT
710054 TTTTACCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
22 21 0.48
23 23 0.52
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:710443 original size:23 final size:23
Alignment explanation
Indices: 710417--710479 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
710407 ATATAACAAC
710417 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
710440 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
710463 TACCTATTACATCATAT
1 TACCTATTACATTATAT
710480 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:710872 original size:23 final size:23
Alignment explanation
Indices: 710846--710908 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
710836 ATATAACCAC
710846 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
710869 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
710892 TACCTATTACATCATAT
1 TACCTATTACATTATAT
710909 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:711085 original size:429 final size:428
Alignment explanation
Indices: 709751--711110 Score: 2509
Period size: 429 Copynumber: 3.2 Consensus size: 428
709741 AAGTAATTTG
*
709751 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
1 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
709816 GAATTTTTAATTTAATAATAATATATCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTAC
66 GAATTTTTAATTTAATAATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTAC
709880 TAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAA
131 TAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAA
* * * *
709945 GTATGGACACTTTTATAAAAATGATAGATATTTTACAATATAAGCACTACCTATTACATTATATA
196 GTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATA
* * *
710010 AACGCTA-CTATTACATTATATAAGCGCTACCTAATACATTATATTTTTACCTATTATATTGAAA
261 AACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAA
*
710074 GTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCCATT
326 GTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTT-CAAT
*
710139 TTTTTTAATAGTGTTTTAT-TTTTCCACCTACAATATTA
390 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
* *
710177 ATTTAATAATTTTATTTGCACAAAAAATTA-TTGATTGTTTTGATACTTTAT-AAATATTATTTA
1 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
710240 GAATTTTTAATTTAATAATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTAC
66 GAATTTTTAATTTAATAATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTAC
710305 TAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAA
131 TAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAA
*
710370 GTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACAACTACCTATTACATTATATA
196 GTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATA
710435 AACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAA
261 AACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAA
710500 GTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATT
326 GTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATT
710565 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
391 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
710603 ATTTAATAATTTCATTTGCAC-AAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
1 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
*
710667 GAATTTTTAATTTAATAATATTATATATCGTAACGTAAAAAATAAATCATTAGATGCCTATAATT
66 GAATTTTTAATTTAATAATA--ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATT
710732 ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
129 ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
*
710797 AAGTATTGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
194 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
710862 TAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
259 TAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
710927 AAGTGTCCATAC-TTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
324 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
710991 TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
389 TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
711031 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
1 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
711096 GAATTTTTAATTTAA
66 GAATTTTTAATTTAA
711111 CAACATTAAC
Statistics
Matches: 908, Mismatches: 18, Indels: 13
0.97 0.02 0.01
Matches are distributed among these distances:
424 45 0.05
425 210 0.23
426 203 0.22
427 32 0.04
428 113 0.12
429 305 0.34
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (428 bp):
ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
GAATTTTTAATTTAATAATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTAC
TAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAA
GTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATA
AACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAA
GTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTA
Found at i:711379 original size:39 final size:39
Alignment explanation
Indices: 711325--711410 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
711315 CAAGTTGTAG
*
711325 ATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* *
711364 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
711403 ATTTTGAT
1 ATTTTGAT
711411 GAGCATCGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:711687 original size:18 final size:18
Alignment explanation
Indices: 711664--711700 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
711654 CGAAATATAT
711664 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
711682 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
711700 A
1 A
711701 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:712601 original size:25 final size:24
Alignment explanation
Indices: 712539--712603 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
712529 CACTCAAAAG
*
712539 ATGTATATACCTAAATATGTAGTT
1 ATGTACATACCTAAATATGTAGTT
***
712563 AACAACATACCTAAATATGTAGTT
1 ATGTACATACCTAAATATGTAGTT
712587 ATTGTACATACCTAAAT
1 A-TGTACATACCTAAAT
712604 TTAATGATAA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
24 21 0.64
25 12 0.36
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (24 bp):
ATGTACATACCTAAATATGTAGTT
Found at i:715592 original size:183 final size:183
Alignment explanation
Indices: 715068--715560 Score: 898
Period size: 183 Copynumber: 2.7 Consensus size: 183
715058 TTAAAATTAC
*
715068 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
715133 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCACATAAAACCGGTATATTTATACCGGTT
715198 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
*
715251 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTATCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
*
715316 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCACATAAAACCGGTATATTTATACCGGTT
*
715381 ATATTACAAAATTATTTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
* *
715434 CGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACAAAAAGTACCGACACAA
1 CGACACTTTTTTA-AATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
715498 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCACATAAAACCGGTATATTTATACCG
65 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCACATAAAACCGGTATATTTATACCG
715561 ATAGCATTGC
Statistics
Matches: 300, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
183 297 0.99
184 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (183 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCACATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
Found at i:717068 original size:3 final size:3
Alignment explanation
Indices: 717060--717140 Score: 81
Period size: 3 Copynumber: 27.0 Consensus size: 3
717050 ACTTGTTTGG
* * * * *
717060 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GTT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * *
717108 AGC TTC ATC ATC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
717141 GTCAGCTTCA
Statistics
Matches: 60, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.38
Consensus pattern (3 bp):
ATC
Found at i:717077 original size:12 final size:12
Alignment explanation
Indices: 717064--717152 Score: 79
Period size: 12 Copynumber: 7.4 Consensus size: 12
717054 GTTTGGATCA
* *
717064 TCATCTTCATCA
1 TCATCATCATCT
*
717076 TCATCATCATCA
1 TCATCATCATCT
*
717088 TCGTCATCATCT
1 TCATCATCATCT
* * *
717100 TCATCGTTAGCT
1 TCATCATCATCT
*
717112 TCATCATCATCA
1 TCATCATCATCT
*
717124 TCATCGTCATCT
1 TCATCATCATCT
* *
717136 TCATCGTCAGCT
1 TCATCATCATCT
717148 TCATC
1 TCATC
717153 TTCTGCGACC
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 63 1.00
ACGTcount: A:0.22, C:0.33, G:0.07, T:0.38
Consensus pattern (12 bp):
TCATCATCATCT
Found at i:717116 original size:36 final size:36
Alignment explanation
Indices: 717076--717152 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
717066 ATCTTCATCA
* *
717076 TCATCATCATCATCGTCATCATCTTCATCGTTAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
*
717112 TCATCATCATCATCATCGTCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
717148 TCATC
1 TCATC
717153 TTCTGCGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.32, G:0.08, T:0.38
Consensus pattern (36 bp):
TCATCATCATCATCATCATCATCTTCATCGTCAGCT
Found at i:717153 original size:18 final size:18
Alignment explanation
Indices: 717094--717155 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
717084 ATCATCGTCA
*
717094 TCATCTTCATCGTTAGCT
1 TCATCTTCATCGTCAGCT
* * * *
717112 TCATCATCATCATCATCG
1 TCATCTTCATCGTCAGCT
717130 TCATCTTCATCGTCAGCT
1 TCATCTTCATCGTCAGCT
717148 TCATCTTC
1 TCATCTTC
717156 TGCGACCGCT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.19, C:0.32, G:0.08, T:0.40
Consensus pattern (18 bp):
TCATCTTCATCGTCAGCT
Found at i:717155 original size:6 final size:6
Alignment explanation
Indices: 717064--717155 Score: 69
Period size: 6 Copynumber: 15.3 Consensus size: 6
717054 GTTTGGATCA
* * * * * *
717064 TCATCT TCATCA TCATCA TCATCA TCGTCA TCATCT TCATCGT T-AGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATC-T TCATCT
* * * * *
717112 TCATCA TCATCA TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
717156 TGCGACCGCT
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
5 2 0.03
6 67 0.94
7 2 0.03
ACGTcount: A:0.22, C:0.33, G:0.07, T:0.39
Consensus pattern (6 bp):
TCATCT
Found at i:719162 original size:19 final size:19
Alignment explanation
Indices: 719118--719164 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
719108 ATATTCACAA
*
719118 ACAAAAATATAAATCGTAT
1 ACAAAATTATAAATCGTAT
*
719137 ACAAAATTATAAATCTTAT
1 ACAAAATTATAAATCGTAT
719156 ACAAAATTA
1 ACAAAATTA
719165 ACCCTACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (19 bp):
ACAAAATTATAAATCGTAT
Found at i:721041 original size:21 final size:21
Alignment explanation
Indices: 721016--721059 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
721006 CCCCTTATGC
721016 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* *
721037 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
721058 CT
1 CT
721060 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:723476 original size:20 final size:20
Alignment explanation
Indices: 723449--723495 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
723439 TCCGGTAACG
723449 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
723468 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
723489 TTTTACC
1 TTTTACC
723496 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:724007 original size:228 final size:228
Alignment explanation
Indices: 723544--724938 Score: 2594
Period size: 228 Copynumber: 6.1 Consensus size: 228
723534 ACTTTTATAC
723544 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTTAAAGTTATGTAATTTATGTTTCAATT
1 GTATGGACACTTTTATAAAAATGATATATAC-TTTTTTTAAAGTTATGTAATTTATGTTTCAA-T
723609 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
64 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
* *
723674 ATTATTTGATTATTTGATA---T-TCAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
129 ATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
723735 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
194 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
723770 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
723835 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
66 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
*
723900 TATTTGATTTTCTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
131 TATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
723965 ATAATAATAAATATGTTTTCCACAGTGAAATAA
196 ATAATAATAAATATGTTTTCCACAGTGAAATAA
723998 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
724063 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
66 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
*
724128 TATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
131 TATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
724193 ATAATAATAAATATGTTTTCCACAGTGAAATAA
196 ATAATAATAAATATGTTTTCCACAGTGAAATAA
724226 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
724291 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
66 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
724356 TATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
131 TATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
*
724421 ATAATAATAAATATGTTTTTCACAGTGAAATAA
196 ATAATAATAAATATGTTTTCCACAGTGAAATAA
724454 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TT
*
724519 TTTTTAATAGCGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
65 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
724584 TTATTTGATTTTTTGATA-TTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
130 TTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
724648 GATAATAATAAATATGTTTTCCACAGTGAAATAA
195 GATAATAATAAATATGTTTTCCACAGTGAAATAA
*
724682 GTATGGACACTTTTAT-AAAA--ATATATACTTTTTTTAAAGTTATGTAATTTATGTTTTAA-TT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
724743 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACACAAAAT
66 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
724808 TATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
131 TATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
*
724873 ATAATAATAAATATATTTT-CACAGTGAAATAA
196 ATAATAATAAATATGTTTTCCACAGTGAAATAA
* *
724905 GTATGGACACTTTTATAAAAAGGATAGATACTTT
1 GTATGGACACTTTTATAAAAATGATATATACTTT
724939 ACAATATAAC
Statistics
Matches: 1146, Mismatches: 14, Indels: 18
0.97 0.01 0.02
Matches are distributed among these distances:
223 111 0.10
224 152 0.13
225 69 0.06
226 41 0.04
227 5 0.00
228 684 0.60
229 84 0.07
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (228 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
TATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
ATAATAATAAATATGTTTTCCACAGTGAAATAA
Found at i:732701 original size:27 final size:27
Alignment explanation
Indices: 732668--732775 Score: 207
Period size: 27 Copynumber: 4.0 Consensus size: 27
732658 ACCTACAACC
732668 GTCACAATCCTTTTACTCCATCAACTG
1 GTCACAATCCTTTTACTCCATCAACTG
*
732695 GTAACAATCCTTTTACTCCATCAACTG
1 GTCACAATCCTTTTACTCCATCAACTG
732722 GTCACAATCCTTTTACTCCATCAACTG
1 GTCACAATCCTTTTACTCCATCAACTG
732749 GTCACAATCCTTTTACTCCATCAACTG
1 GTCACAATCCTTTTACTCCATCAACTG
732776 ATTTAAATTT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.33
Consensus pattern (27 bp):
GTCACAATCCTTTTACTCCATCAACTG
Found at i:742114 original size:35 final size:35
Alignment explanation
Indices: 742036--742115 Score: 85
Period size: 35 Copynumber: 2.3 Consensus size: 35
742026 ATCATTAAAC
*
742036 AACAAACTTACAATAAGAATTAAATAGTAAATGAT
1 AACAAAATTACAATAAGAATTAAATAGTAAATGAT
* *
742071 AACCAAATTACAATAACTGATATTAAATGGT-AAT-A-
1 AACAAAATTACAATAA--GA-ATTAAATAGTAAATGAT
742106 AACAAAATTA
1 AACAAAATTA
742116 ATTGAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
35 23 0.61
36 1 0.03
37 5 0.13
38 9 0.24
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.26
Consensus pattern (35 bp):
AACAAAATTACAATAAGAATTAAATAGTAAATGAT
Found at i:744380 original size:111 final size:111
Alignment explanation
Indices: 744243--744567 Score: 614
Period size: 111 Copynumber: 2.9 Consensus size: 111
744233 ATTACAAAAA
*
744243 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
744308 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
744354 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
744419 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
744465 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
* * *
744530 AATTAAAACGTTAAAATGTTATCATATCAACAAAGTGT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGT
744568 AGAAATATAT
Statistics
Matches: 210, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
111 210 1.00
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
Found at i:744657 original size:17 final size:18
Alignment explanation
Indices: 744637--744677 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
744627 GAATTATATT
744637 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
744654 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
*
744672 ATTAAA
1 AGTAAA
744678 GACATAATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:744935 original size:50 final size:51
Alignment explanation
Indices: 744881--744986 Score: 135
Period size: 50 Copynumber: 2.1 Consensus size: 51
744871 AGATACCTAA
* * *
744881 GTATAGT-GCGGATCAGGGAACGCGCTATACCCACGTGACGTCAAATCATC
1 GTATAGTCGCGGAGCAGGGAACGCGCTATACCCACGTGACGCCAAATCAGC
* ** *
744931 GTATA-TCGCGGGGCAGGGGGCGCGCTATGCCCACGTGACGCCAAATCAGC
1 GTATAGTCGCGGAGCAGGGAACGCGCTATACCCACGTGACGCCAAATCAGC
744981 GTATAG
1 GTATAG
744987 CGCAGTTCAG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
49 1 0.02
50 46 0.98
ACGTcount: A:0.25, C:0.26, G:0.31, T:0.18
Consensus pattern (51 bp):
GTATAGTCGCGGAGCAGGGAACGCGCTATACCCACGTGACGCCAAATCAGC
Found at i:744998 original size:50 final size:50
Alignment explanation
Indices: 744901--745006 Score: 140
Period size: 50 Copynumber: 2.1 Consensus size: 50
744891 GATCAGGGAA
* * * *
744901 CGCGCTATACCCACGTGACGTCAAATCATCGTATATCGCGGGGCAGGGGG
1 CGCGCTATACCCACGTGACGCCAAATCAGCGTATAGCGCAGGGCAGGGGG
* **
744951 CGCGCTATGCCCACGTGACGCCAAATCAGCGTATAGCGCAGTTCAGGGGG
1 CGCGCTATACCCACGTGACGCCAAATCAGCGTATAGCGCAGGGCAGGGGG
*
745001 CACGCT
1 CGCGCT
745007 TTACTGCTAC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.17
Consensus pattern (50 bp):
CGCGCTATACCCACGTGACGCCAAATCAGCGTATAGCGCAGGGCAGGGGG
Found at i:751549 original size:228 final size:228
Alignment explanation
Indices: 751146--751606 Score: 832
Period size: 228 Copynumber: 2.0 Consensus size: 228
751136 AGTGACTTAA
*
751146 GGTTATTAGCTTTTATAATCGTCATATTCTTTGATTGCCAAGACTTTAGAAGAGAGTATATCATC
1 GGTTCTTAGCTTTTATAATCGTCATATTCTTTGATTGCCAAGACTTTAGAAGAGAGTATATCATC
* *
751211 TTTCTCATAAGCTTCTTATTAGGGATTATTTCTCCAAATCCCTTGAGACCATTGACAATCATGGA
66 TTTCTCATAAGCTTCTTATTAGGGATTACTTCTCCAAATCACTTGAGACCATTGACAATCATGGA
* *
751276 AATCTATCGTTCATAGCTTTGATGTCTTCATCTGATTTTATCTTGAAATTTTCATAGCTATGGTT
131 AATCTATCGTTCATAGCTTTGATGTCTTCATCTGATTTCATCTTGAAATTTTCATAACTATGGTT
*
751341 GAGAAGACTAATCTTGGTTTCCCTCACTTCATT
196 GAGAAGACTAATCTTGATTTCCCTCACTTCATT
* * *
751374 GGTTCTTAGCTTTTATAATCGTCATATTCTTTGATTTCCAAGACTTTGGAATAGAGTATATCATC
1 GGTTCTTAGCTTTTATAATCGTCATATTCTTTGATTGCCAAGACTTTAGAAGAGAGTATATCATC
751439 TTTCTCATAAGCTTCTTATTAGGGATTACTTCTCCAAATCACTTGAGACCATTGACAATCATGGA
66 TTTCTCATAAGCTTCTTATTAGGGATTACTTCTCCAAATCACTTGAGACCATTGACAATCATGGA
*
751504 AATCTATCTTTCATAGCTTTGATGTCTTCATCTGATTTCATCTTGAAATTTTCATAACTATGGTT
131 AATCTATCGTTCATAGCTTTGATGTCTTCATCTGATTTCATCTTGAAATTTTCATAACTATGGTT
751569 GAGAAGACTAATCTTGATTTCCCTCACTTCATT
196 GAGAAGACTAATCTTGATTTCCCTCACTTCATT
751602 GGTTC
1 GGTTC
751607 CTTCATGAGT
Statistics
Matches: 223, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
228 223 1.00
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.41
Consensus pattern (228 bp):
GGTTCTTAGCTTTTATAATCGTCATATTCTTTGATTGCCAAGACTTTAGAAGAGAGTATATCATC
TTTCTCATAAGCTTCTTATTAGGGATTACTTCTCCAAATCACTTGAGACCATTGACAATCATGGA
AATCTATCGTTCATAGCTTTGATGTCTTCATCTGATTTCATCTTGAAATTTTCATAACTATGGTT
GAGAAGACTAATCTTGATTTCCCTCACTTCATT
Found at i:757850 original size:16 final size:16
Alignment explanation
Indices: 757829--757871 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
757819 TTGGGTCAAA
*
757829 GTCAACGGTCATACCG
1 GTCAACGGTCAGACCG
* *
757845 GTCAACGATCAGACTG
1 GTCAACGGTCAGACCG
*
757861 GTCAATGGTCA
1 GTCAACGGTCA
757872 ACAGTTAGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.21
Consensus pattern (16 bp):
GTCAACGGTCAGACCG
Found at i:759669 original size:67 final size:67
Alignment explanation
Indices: 759592--759723 Score: 255
Period size: 67 Copynumber: 2.0 Consensus size: 67
759582 ACTACAATTA
*
759592 TAGAAACGTGTAAATTTTTTAAACATAAATTTTAAAATTTTTATATTTCTTATATATATATATAT
1 TAGAAACGTGTAAATTTTTTAAACATAAATTTTAAAATTTATATATTTCTTATATATATATATAT
759657 AT
66 AT
759659 TAGAAACGTGTAAATTTTTTAAACATAAATTTTAAAATTTATATATTTCTTATATATATATATAT
1 TAGAAACGTGTAAATTTTTTAAACATAAATTTTAAAATTTATATATTTCTTATATATATATATAT
759724 TATATTTGGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (67 bp):
TAGAAACGTGTAAATTTTTTAAACATAAATTTTAAAATTTATATATTTCTTATATATATATATAT
AT
Found at i:761772 original size:16 final size:17
Alignment explanation
Indices: 761745--761792 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
761735 CCCCGTCCCG
761745 ATTATATATATATATAAT
1 ATTAT-TATATATATAAT
* *
761763 ATT-TTATATATTTTAT
1 ATTATTATATATATAAT
761779 ATTAATTATATATA
1 ATT-ATTATATATA
761793 ATAAAAACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 13 0.52
17 1 0.04
18 11 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTATTATATATATAAT
Found at i:763315 original size:32 final size:32
Alignment explanation
Indices: 763267--763341 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
763257 CAGACCACTC
763267 TCCGTT-A-AAAAAAACGGAAGTGCTGACGCA
1 TCCGTTAATAAAAAAACGGAAGTGCTGACGCA
* * **
763297 TCCGTTAATAAAAAAACGGAAGTGTTGTCGTG
1 TCCGTTAATAAAAAAACGGAAGTGCTGACGCA
763329 TCCGTTAATAAAA
1 TCCGTTAATAAAA
763342 CTGGCATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 6 0.15
31 1 0.03
32 32 0.82
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (32 bp):
TCCGTTAATAAAAAAACGGAAGTGCTGACGCA
Found at i:763949 original size:95 final size:93
Alignment explanation
Indices: 763780--763964 Score: 257
Period size: 95 Copynumber: 2.0 Consensus size: 93
763770 TTAATAATTT
* * *
763780 TCAAATAAATTTTGGTTCGATTAACGGTTAAGGAAAAAATAATTTATTTTATTCGGTTAATAATT
1 TCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAAATAATTGATTTGATTCGGTTAATAATT
763845 TTCAAATAAATTTCGATTCGATTAACGA
66 TTCAAATAAATTTCGATTCGATTAACGA
* * *
763873 TCAAAT-AATTTTTGTTCGATTAATGGTTAAAGAAAAAA-AAGCGGTTGATTTGGTTCGGTTAAT
1 TCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAAATAA----TTGATTTGATTCGGTTAAT
*
763936 AATTTTCAAATAAATTTCGGTTCGATTAA
62 AATTTTCAAATAAATTTCGATTCGATTAA
763965 TGGTTAAAGA
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
91 2 0.02
92 29 0.36
93 6 0.07
95 44 0.54
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.39
Consensus pattern (93 bp):
TCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAAATAATTGATTTGATTCGGTTAATAATT
TTCAAATAAATTTCGATTCGATTAACGA
Found at i:763950 original size:161 final size:150
Alignment explanation
Indices: 763711--764116 Score: 519
Period size: 148 Copynumber: 2.6 Consensus size: 150
763701 TTATATGGTT
* * * * * * *
763711 AAATAAATTTCAGTTCTATTAATGGTTACATGAAAAAAATTTCGGTTAATTCGATTCGTTTAATA
1 AAAT-AATTTCGGTTCGATTAATGGTTA-AAGAAAAAAA-ATCGGTTAATTTGGTTCGGTTAATA
763776 ATTTTCAAATAAATTTTGGTTCGATTAACGGTTAAGGAAAAAATAATTTATTTTATTCGGTTAAT
63 ATTTTCAAATAAATTTTGGTTCGATTAACGGTTAA--AAAAAA-AA---A--TTA---GGTTAAT
763841 AATTTTCAAATAAATTTCGATTCGATTAACGATC
117 AATTTTCAAATAAATTTCGATTCGATTAACGATC
** * *
763875 AAATAATTTTTGTTCGATTAATGGTTAAAGAAAAAAAAGCGGTTGATTTGGTTCGGTTAATAATT
1 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAAATCGGTTAATTTGGTTCGGTTAATAATT
* * * *
763940 TTCAAATAAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATTAGGTTAATATTTTTCAAATAAA
66 TTCAAATAAATTTTGGTTCGATTAACGGTTAAAAAAAAAAATTAGGTTAATAATTTTCAAATAAA
* *
764005 TTTTGATTCGATTAACGGTC
131 TTTCGATTCGATTAACGATC
764025 AAATAATTTCGGTTCGATTAAT-GTTAAAG-AAAAAAATCGGTTAATTTGGTTCGGTTAATAATT
1 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAAATCGGTTAATTTGGTTCGGTTAATAATT
764088 TTCAAATAAATTTTGGTTCGATTAACGGT
66 TTCAAATAAATTTTGGTTCGATTAACGGT
764117 CAAATAATTT
Statistics
Matches: 220, Mismatches: 22, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
148 59 0.27
149 7 0.03
150 58 0.26
153 3 0.01
155 1 0.00
158 2 0.01
159 5 0.02
161 52 0.24
162 9 0.04
163 20 0.09
164 4 0.02
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (150 bp):
AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAAATCGGTTAATTTGGTTCGGTTAATAATT
TTCAAATAAATTTTGGTTCGATTAACGGTTAAAAAAAAAAATTAGGTTAATAATTTTCAAATAAA
TTTCGATTCGATTAACGATC
Found at i:763959 original size:69 final size:69
Alignment explanation
Indices: 763873--764112 Score: 211
Period size: 69 Copynumber: 3.3 Consensus size: 69
763863 CGATTAACGA
** * *
763873 TCAAAT-AATTTTTGTTCGATTAATGGTTAAAGAAAAAAAAGCGGTTGATTTGGTTCGGTTAATA
1 TCAAATAAATTTCGGTTCGATTAATGGTTAAAGAAAAAAAATCGGTTAATTTGGTTCGGTTAATA
763937 ATTT
66 ATTT
* * * ***
763941 TCAAATAAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATTAGGTTAATATT-TTTCAAATAA-
1 TCAAATAAATTTCGGTTCGATTAATGGTTAAAGAAAAAAAATCGGTTAAT-TTGGTTCGGTTAAT
*
764004 ATTTTGAT
65 A-ATT--T
764012 TCGATTAACGGTCAAATAATTTCGGTTCGATTAAT-GTTAAAG-AAAAAAATCGGTTAATTTGGT
1 TC-A--AA---T---A-AATTTCGGTTCGATTAATGGTTAAAGAAAAAAAATCGGTTAATTTGGT
764075 TCGGTTAATAATTT
56 TCGGTTAATAATTT
*
764089 TCAAATAAATTTTGGTTCGATTAA
1 TCAAATAAATTTCGGTTCGATTAA
764113 CGGTCAAATA
Statistics
Matches: 136, Mismatches: 19, Indels: 35
0.72 0.10 0.18
Matches are distributed among these distances:
67 16 0.12
68 8 0.06
69 45 0.33
70 2 0.01
71 4 0.03
72 1 0.01
74 4 0.03
76 1 0.01
77 4 0.03
78 2 0.01
79 22 0.16
80 9 0.07
81 18 0.13
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (69 bp):
TCAAATAAATTTCGGTTCGATTAATGGTTAAAGAAAAAAAATCGGTTAATTTGGTTCGGTTAATA
ATTT
Found at i:764059 original size:150 final size:149
Alignment explanation
Indices: 763834--764112 Score: 470
Period size: 150 Copynumber: 1.9 Consensus size: 149
763824 TATTTTATTC
**
763834 GGTTAATAATTTTCAAATAAATTTCGATTCGATTAACGATCAAATAATTTTTGTTCGATTAATGG
1 GGTTAATAATTTTCAAATAAATTTCGATTCGATTAACGATCAAATAATTTCGGTTCGATTAATGG
*
763899 TTAAAGAAAAAAAAGCGGTTGATTTGGTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTA
66 TTAAAG-AAAAAAAGCGGTTAATTTGGTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTA
763964 ATGGTTAAAGAAAAAAATTA
130 ATGGTTAAAGAAAAAAATTA
* * *
763984 GGTTAATATTTTTCAAATAAATTTTGATTCGATTAACGGTCAAATAATTTCGGTTCGATTAAT-G
1 GGTTAATAATTTTCAAATAAATTTCGATTCGATTAACGATCAAATAATTTCGGTTCGATTAATGG
* *
764048 TTAAAGAAAAAAATCGGTTAATTTGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTCGATTAA
66 TTAAAGAAAAAAAGCGGTTAATTTGGTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAA
764113 CGGTCAAATA
Statistics
Matches: 121, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
148 56 0.46
149 7 0.06
150 58 0.48
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.39
Consensus pattern (149 bp):
GGTTAATAATTTTCAAATAAATTTCGATTCGATTAACGATCAAATAATTTCGGTTCGATTAATGG
TTAAAGAAAAAAAGCGGTTAATTTGGTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAA
TGGTTAAAGAAAAAAATTA
Found at i:764092 original size:93 final size:94
Alignment explanation
Indices: 763984--764191 Score: 364
Period size: 93 Copynumber: 2.2 Consensus size: 94
763974 AAAAAAATTA
* *
763984 GGTTAATATTTTTCAAATAAATTTTGATTCGATTAACGGTCAAATAATTTCGGTTCGATTAATGT
1 GGTTAATAATTTTCAAATAAATTTTGATTCGATTAACGGTCAAATAATTTCGGGTCGATTAATGT
764049 TAAAGAAAAAAA-TCGGTTAATTTGGTTC
66 TAAAGAAAAAAATTCGGTTAATTTGGTTC
* *
764077 GGTTAATAATTTTCAAATAAATTTTGGTTCGATTAACGGTCAAATAATTTTGGGTCGATTAATGT
1 GGTTAATAATTTTCAAATAAATTTTGATTCGATTAACGGTCAAATAATTTCGGGTCGATTAATGT
764142 TAAAGAAAAAAATTCGGTTAATTTGGTTC
66 TAAAGAAAAAAATTCGGTTAATTTGGTTC
*
764171 GATTAATAATTTTCAAATAAA
1 GGTTAATAATTTTCAAATAAA
764192 ATATTTTTTT
Statistics
Matches: 109, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 73 0.67
94 36 0.33
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (94 bp):
GGTTAATAATTTTCAAATAAATTTTGATTCGATTAACGGTCAAATAATTTCGGGTCGATTAATGT
TAAAGAAAAAAATTCGGTTAATTTGGTTC
Found at i:769862 original size:23 final size:23
Alignment explanation
Indices: 769823--769870 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
769813 CACGATCCGG
769823 ACTTTACTAATTCCTAA-TAACTA
1 ACTTTACTAATTCCTAACT-ACTA
*
769846 ACTTTTCTAACTT-CTAACTACTA
1 ACTTTACTAA-TTCCTAACTACTA
769869 AC
1 AC
769871 CACTAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 19 0.86
24 3 0.14
ACGTcount: A:0.35, C:0.25, G:0.00, T:0.40
Consensus pattern (23 bp):
ACTTTACTAATTCCTAACTACTA
Found at i:772856 original size:14 final size:15
Alignment explanation
Indices: 772837--772866 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
772827 TTGCATCACG
772837 TTTACATT-TGCATT
1 TTTACATTATGCATT
772851 TTTACATTATGCATT
1 TTTACATTATGCATT
772866 T
1 T
772867 GTATTTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.23, C:0.13, G:0.07, T:0.57
Consensus pattern (15 bp):
TTTACATTATGCATT
Found at i:779572 original size:23 final size:23
Alignment explanation
Indices: 779546--779593 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
779536 AAGGGAAAAT
779546 AAAAGTAAATAAAAAGAAATAGA
1 AAAAGTAAATAAAAAGAAATAGA
779569 AAAAGTAAATAAAAAGAAATAGA
1 AAAAGTAAATAAAAAGAAATAGA
779592 AA
1 AA
779594 GAAAAAAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (23 bp):
AAAAGTAAATAAAAAGAAATAGA
Found at i:779595 original size:10 final size:10
Alignment explanation
Indices: 779542--779597 Score: 60
Period size: 10 Copynumber: 5.3 Consensus size: 10
779532 GGAAAAGGGA
779542 AAAT-AAAAG
1 AAATAAAAAG
779551 TAAATAAAAAG
1 -AAATAAAAAG
779562 AAATAGAAAAAG
1 AAAT--AAAAAG
779574 TAAATAAAAAG
1 -AAATAAAAAG
*
779585 AAATAGAAAG
1 AAATAAAAAG
779595 AAA
1 AAA
779598 AAAGCAAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
10 20 0.49
11 11 0.27
12 6 0.15
13 4 0.10
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (10 bp):
AAATAAAAAG
Found at i:779747 original size:13 final size:13
Alignment explanation
Indices: 779729--779771 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
779719 ATTTTGAGCG
779729 TGAGATGAAACCA
1 TGAGATGAAACCA
*
779742 TGAGATAAAACCA
1 TGAGATGAAACCA
779755 TGAGATGAAACCA
1 TGAGATGAAACCA
779768 TGAG
1 TGAG
779772 TGGGAACTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.47, C:0.14, G:0.23, T:0.16
Consensus pattern (13 bp):
TGAGATGAAACCA
Found at i:780397 original size:132 final size:132
Alignment explanation
Indices: 780160--780410 Score: 358
Period size: 132 Copynumber: 1.9 Consensus size: 132
780150 CAGCATCTAC
* * * * *
780160 ATTTTGTTTGATTCTTCACATAAGGAGTTGGATCAACAGTGTCATTCCGTTCGATTCTTCACAGA
1 ATTTTGTTTGATTATTCACAGAAGGAGTTGGATCAACAATGTCATTCCGTTCAATTCTTCACAAA
* * * *
780225 AGAAGTTGAATCAACATAACCTTATTTTTCTCGGTTCTATCACAGAATGAGGTAAATCATCATCA
66 AGAAGTTGAATCAACATAACCTTATTTTGCTAGATTCTATCACAAAATGAGGTAAATCATCATCA
780290 AT
131 AT
* * * *
780292 ATTTTGTTTGATTATTCATAGAATGAGTTGGATCAACAATTTCATTCCGTTTAATTCTTCACAAA
1 ATTTTGTTTGATTATTCACAGAAGGAGTTGGATCAACAATGTCATTCCGTTCAATTCTTCACAAA
** *
780357 AGAAGTTGAATTGACATAACCTTATTTTGCTAGATTCTATCATAAAATGAGGTA
66 AGAAGTTGAATCAACATAACCTTATTTTGCTAGATTCTATCACAAAATGAGGTA
780411 GATTGGTGTT
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
132 103 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (132 bp):
ATTTTGTTTGATTATTCACAGAAGGAGTTGGATCAACAATGTCATTCCGTTCAATTCTTCACAAA
AGAAGTTGAATCAACATAACCTTATTTTGCTAGATTCTATCACAAAATGAGGTAAATCATCATCA
AT
Found at i:780572 original size:43 final size:43
Alignment explanation
Indices: 780478--780583 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 43
780468 CATGTTACTT
* * **
780478 GATCCTTCACAGAAGGAGTTGGATCAATAACAATCTTTCATTG
1 GATCCTTCACAGAAGGAGTTAGAACAATAACAATCGCTCATTG
*
780521 GATCCTTCACAGAAGGAGTTAGAACAGTGAA-AATCGCTCACTTG
1 GATCCTTCACAGAAGGAGTTAGAACAAT-AACAATCGCTCA-TTG
* *
780565 G-TTCTTCACAAAAGGAGTT
1 GATCCTTCACAGAAGGAGTT
780584 GAATCAACGT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 48 0.89
44 6 0.11
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (43 bp):
GATCCTTCACAGAAGGAGTTAGAACAATAACAATCGCTCATTG
Found at i:781302 original size:19 final size:18
Alignment explanation
Indices: 781253--781304 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
781243 ATATAGTTTC
*
781253 ATATTAAATAATTGCATATT
1 ATATT-AAT-ATTACATATT
*
781273 ATAAATAATATTACATATT
1 AT-ATTAATATTACATATT
781292 ATATTAGATATTA
1 ATATTA-ATATTA
781305 AATAATTGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 3 0.11
19 17 0.63
20 5 0.19
21 2 0.07
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (18 bp):
ATATTAATATTACATATT
Found at i:786754 original size:137 final size:138
Alignment explanation
Indices: 786496--786760 Score: 417
Period size: 138 Copynumber: 1.9 Consensus size: 138
786486 TTATTGAGTC
* *
786496 GAATAGTTAAAATGGAACATCGAGCAAAAACGAAGATCAAATTAAGAATTCACCTAATTTAAAGA
1 GAATAATTAAAATGGAACATCGAGCAAAAACGAAGACCAAATTAAGAATTCACCTAATTTAAAGA
* *
786561 CTAAATTTGTAATTAGGCCTAAGATGGAGGCTCTAATATTAATCCTAATTAATTTTAATCAATTA
66 CTAAATGTGTAATTAGGCCTAAGATGGAGACTCTAATATTAATCCTAATTAATTTTAATCAATTA
786626 TGCGATTT
131 TGCGATTT
* * * **
786634 GAATAATTAAATTGGAACCTCGAGCAAAAGCGTGGACCAAATTAAGAATTCACCTAATTTAAAGA
1 GAATAATTAAAATGGAACATCGAGCAAAAACGAAGACCAAATTAAGAATTCACCTAATTTAAAGA
*
786699 -TAAATGTG-AATTTAGGCCTAAGATGGAGACTCTAATATTGATCCTAATTAATTTTAATCAAT
66 CTAAATGTGTAA-TTAGGCCTAAGATGGAGACTCTAATATTAATCCTAATTAATTTTAATCAAT
786761 AATTGATTCA
Statistics
Matches: 116, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
136 2 0.02
137 56 0.48
138 58 0.50
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.31
Consensus pattern (138 bp):
GAATAATTAAAATGGAACATCGAGCAAAAACGAAGACCAAATTAAGAATTCACCTAATTTAAAGA
CTAAATGTGTAATTAGGCCTAAGATGGAGACTCTAATATTAATCCTAATTAATTTTAATCAATTA
TGCGATTT
Found at i:791135 original size:9 final size:9
Alignment explanation
Indices: 791123--791172 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
791113 TTTATGAAAT
791123 GAATGTAAA
1 GAATGTAAA
791132 GAATG-AAA
1 GAATGTAAA
791140 CGAATGTAAA
1 -GAATGTAAA
*
791150 AAATGTGAAA
1 GAATGT-AAA
*
791160 -AATATAAA
1 GAATGTAAA
791168 GAATG
1 GAATG
791173 ATTGCCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
8 6 0.18
9 22 0.65
10 6 0.18
ACGTcount: A:0.58, C:0.02, G:0.20, T:0.20
Consensus pattern (9 bp):
GAATGTAAA
Found at i:791139 original size:18 final size:18
Alignment explanation
Indices: 791116--791154 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
791106 TACTAAATTT
* *
791116 ATGAAATGAATGTAAAGA
1 ATGAAACGAATGTAAAAA
791134 ATGAAACGAATGTAAAAA
1 ATGAAACGAATGTAAAAA
791152 ATG
1 ATG
791155 TGAAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.56, C:0.03, G:0.21, T:0.21
Consensus pattern (18 bp):
ATGAAACGAATGTAAAAA
Found at i:793416 original size:103 final size:103
Alignment explanation
Indices: 793088--793408 Score: 561
Period size: 103 Copynumber: 3.1 Consensus size: 103
793078 GTCGAGGGTC
* *
793088 TATGTGGTCTTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
793153 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
* *
793191 TATGTGGTCCATCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
793256 TTGATCCTTGGCATATGTATATGATGCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
793294 TACGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
793359 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
793397 TATGTGGTCCTT
1 TATGTGGTCCTT
793409 ATGGACATTA
Statistics
Matches: 205, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 205 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:793491 original size:23 final size:23
Alignment explanation
Indices: 793415--793492 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
793405 CCTTATGGAC
*
793415 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * * * *
793439 ATTCTACGCGGTACTCCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
*
793462 ATTATATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
793485 ATTATATG
1 ATTATATG
793493 AGCTGTGGTG
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 40 0.93
24 3 0.07
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.33
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:798928 original size:103 final size:103
Alignment explanation
Indices: 798796--799116 Score: 579
Period size: 103 Copynumber: 3.1 Consensus size: 103
798786 GTCGAGGGTC
798796 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
798861 TTGATCATTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
798899 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
798964 TTGATCCTAGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
* *
799002 TATGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTAGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
799067 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
799105 TATGTGGTCCTT
1 TATGTGGTCCTT
799117 AAGGACATTA
Statistics
Matches: 210, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 210 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:799199 original size:23 final size:23
Alignment explanation
Indices: 799123--799199 Score: 91
Period size: 23 Copynumber: 3.3 Consensus size: 23
799113 CCTTAAGGAC
799123 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATATGGCACTACGGTGCA
* *** *
799147 ATTCTACGCGGCACTCCGGTGCA
1 ATTATATATGGCACTACGGTGCA
*
799170 ATTATATATGGCACTTCGGTGCA
1 ATTATATATGGCACTACGGTGCA
799193 ATTATAT
1 ATTATAT
799200 GAGCTGTGGT
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
23 40 0.93
24 3 0.07
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (23 bp):
ATTATATATGGCACTACGGTGCA
Found at i:803078 original size:29 final size:29
Alignment explanation
Indices: 803045--803102 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
803035 TTCAATAGAA
803045 CATAGTTATGTGGGATAAGGGACAAGTGG
1 CATAGTTATGTGGGATAAGGGACAAGTGG
* *
803074 CATAGTTATGTGGGATGAGGGATAAGTGG
1 CATAGTTATGTGGGATAAGGGACAAGTGG
803103 TCCCATCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.05, G:0.40, T:0.26
Consensus pattern (29 bp):
CATAGTTATGTGGGATAAGGGACAAGTGG
Found at i:807753 original size:137 final size:137
Alignment explanation
Indices: 807582--807829 Score: 417
Period size: 137 Copynumber: 1.8 Consensus size: 137
807572 AAAACGAACA
* *
807582 TCGAGCAAAAACGAAGACCAAATTAAGAATTCACCTAATTTAAAGCTAAAT-TTATAATTAGGCC
1 TCGAGCAAAAACGAAGACCAAATTAAGAATTCACCTAATTTAAAGATAAATGTGA-AATTAGGCC
*
807646 TAAGATGGAGGCTCTAATATTAATCCTAATTAATTTTAATCAATTATGCGATTCGAATAATTAAA
65 TAAGATGAAGGCTCTAATATTAATCCTAATTAATTTTAATCAATTATGCGATTCGAATAATTAAA
807711 TTGGATCC
130 TTGGATCC
* **
807719 TCGAGCAAAAGCGTGGACCAAATTAAGAATTCACCTAATTTAAAGATAAATGTGAAATTAGGCCT
1 TCGAGCAAAAACGAAGACCAAATTAAGAATTCACCTAATTTAAAGATAAATGTGAAATTAGGCCT
*
807784 AAGATGAAGGCTCTAATATTGATCCTAATTAATTTTAATCAATTAT
66 AAGATGAAGGCTCTAATATTAATCCTAATTAATTTTAATCAATTAT
807830 TTATTCAAAT
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
137 101 0.98
138 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (137 bp):
TCGAGCAAAAACGAAGACCAAATTAAGAATTCACCTAATTTAAAGATAAATGTGAAATTAGGCCT
AAGATGAAGGCTCTAATATTAATCCTAATTAATTTTAATCAATTATGCGATTCGAATAATTAAAT
TGGATCC
Found at i:808283 original size:16 final size:16
Alignment explanation
Indices: 808262--808295 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
808252 CAGAGTAAAA
808262 CATAAATAACGCGAAT
1 CATAAATAACGCGAAT
*
808278 CATAAATAACGTGAAT
1 CATAAATAACGCGAAT
808294 CA
1 CA
808296 ACCCCAGGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.18, G:0.12, T:0.21
Consensus pattern (16 bp):
CATAAATAACGCGAAT
Found at i:810048 original size:3 final size:3
Alignment explanation
Indices: 810040--810172 Score: 87
Period size: 3 Copynumber: 44.3 Consensus size: 3
810030 TAAATAAATA
* * *
810040 AAT AAT AAT AAT -AT AAT -AT AAA AAT ACT AAT AA- AAT AAT AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * ** *
810085 AA- CAT AAT AAAT GAT AAT TGT AAT AAT AAT AAGGT AAT AGT AA- AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AA--T AAT AAT AAT AAT
* * *
810131 AAT AAC AAT AAAT AAT AAT AAT AAT AGGT AAA AAT AAT AAT A
1 AAT AAT AAT -AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT A
810173 GGATATGGCA
Statistics
Matches: 99, Mismatches: 21, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
2 9 0.09
3 79 0.80
4 8 0.08
5 3 0.03
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:810185 original size:22 final size:19
Alignment explanation
Indices: 810144--810187 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
810134 AACAATAAAT
*
810144 AATAATAATAATAGGTAAA
1 AATAATAATAATAGGCAAA
810163 AATAATAATAGGATATGGCAAA
1 AATAATAATA--ATA-GGCAAA
810185 AAT
1 AAT
810188 GGTGATTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 10 0.48
21 3 0.14
22 8 0.38
ACGTcount: A:0.59, C:0.02, G:0.14, T:0.25
Consensus pattern (19 bp):
AATAATAATAATAGGCAAA
Found at i:811380 original size:18 final size:18
Alignment explanation
Indices: 811357--811392 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
811347 AAAATCAAAC
*
811357 AAGATGATGAATATTAGA
1 AAGATGATGAATAATAGA
811375 AAGATGATGAATAATAGA
1 AAGATGATGAATAATAGA
811393 TAATATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.25
Consensus pattern (18 bp):
AAGATGATGAATAATAGA
Found at i:812338 original size:40 final size:40
Alignment explanation
Indices: 812283--812363 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
812273 CCATTAATTG
*
812283 ATCAAATTATAGATGTTTATTTTGTTCGAGGCTTCATTCA
1 ATCAAATTATAGATGTTCATTTTGTTCGAGGCTTCATTCA
* *
812323 ATCAAATTGTAGATGTTCATTTTGTTCGGGGCTTCATTCA
1 ATCAAATTATAGATGTTCATTTTGTTCGAGGCTTCATTCA
812363 A
1 A
812364 GTTTCATTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (40 bp):
ATCAAATTATAGATGTTCATTTTGTTCGAGGCTTCATTCA
Found at i:812425 original size:6 final size:7
Alignment explanation
Indices: 812408--812452 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
812398 TTAGTTTAAA
812408 AAAAATT
1 AAAAATT
812415 AAAAATT
1 AAAAATT
*
812422 AAAAAAT
1 AAAAATT
812429 AAAAA-T
1 AAAAATT
*
812435 AAAAA-A
1 AAAAATT
812441 AAAAATT
1 AAAAATT
812448 AAAAA
1 AAAAA
812453 ATTTAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
6 11 0.32
7 23 0.68
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (7 bp):
AAAAATT
Found at i:812426 original size:8 final size:8
Alignment explanation
Indices: 812407--812462 Score: 54
Period size: 6 Copynumber: 7.8 Consensus size: 8
812397 GTTAGTTTAA
812407 AAAAAATT
1 AAAAAATT
812415 -AAAAATT
1 AAAAAATT
812422 AAAAAA-T
1 AAAAAATT
812429 -AAAAA-T
1 AAAAAATT
812435 -AAAAA--
1 AAAAAATT
812440 AAAAAATT
1 AAAAAATT
812448 AAAAAATTT
1 AAAAAA-TT
812457 AAAAAA
1 AAAAAA
812463 AGAGTTTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
6 16 0.37
7 8 0.19
8 11 0.26
9 8 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (8 bp):
AAAAAATT
Found at i:812432 original size:13 final size:13
Alignment explanation
Indices: 812416--812454 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
812406 AAAAAAATTA
812416 AAAATTAAAAAAT
1 AAAATTAAAAAAT
* *
812429 AAAAATAAAAAAA
1 AAAATTAAAAAAT
812442 AAAATTAAAAAAT
1 AAAATTAAAAAAT
812455 TTAAAAAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAATTAAAAAAT
Found at i:812593 original size:3 final size:3
Alignment explanation
Indices: 812585--812618 Score: 50
Period size: 3 Copynumber: 10.7 Consensus size: 3
812575 TTTTTGGATA
812585 TAT TAT TAT TAT TAT TAT TAT TAT ATAT ATAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TA
812619 ATCATAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 23 0.77
4 7 0.23
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:816148 original size:16 final size:16
Alignment explanation
Indices: 816127--816164 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
816117 TGTGCAAATC
816127 CGGGTACCCAGATTTT
1 CGGGTACCCAGATTTT
*
816143 CGGGTA-CCTGATTTT
1 CGGGTACCCAGATTTT
*
816158 TGGGTAC
1 CGGGTAC
816165 TCGGAATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.34
Consensus pattern (16 bp):
CGGGTACCCAGATTTT
Found at i:816237 original size:15 final size:15
Alignment explanation
Indices: 816217--816272 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
816207 TCGAATGTTA
816217 CGGGTACCCGGTAAT
1 CGGGTACCCGGTAAT
*
816232 CGGGTACCCGG-ATTT
1 CGGGTACCCGGTA-AT
*
816247 GCGAGTACCCGGTAAT
1 -CGGGTACCCGGTAAT
816263 CGGGTACCCG
1 CGGGTACCCG
816273 ATACCCGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 1 0.03
15 21 0.62
16 11 0.32
17 1 0.03
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.20
Consensus pattern (15 bp):
CGGGTACCCGGTAAT
Found at i:817792 original size:6 final size:6
Alignment explanation
Indices: 817778--817811 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
817768 CGATAATTTT
*
817778 ATTAAA ATTACA ATTACA ATTACA ATTACA ATTA
1 ATTACA ATTACA ATTACA ATTACA ATTACA ATTA
817812 TCCTTGTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (6 bp):
ATTACA
Found at i:819356 original size:14 final size:14
Alignment explanation
Indices: 819339--819371 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
819329 ATTTCTATGT
*
819339 AGGGAATTATTTGC
1 AGGGAATTATTTAC
819353 AGGGAATTATTTAC
1 AGGGAATTATTTAC
819367 AGGGA
1 AGGGA
819372 TTACTCCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.30
Consensus pattern (14 bp):
AGGGAATTATTTAC
Found at i:823083 original size:18 final size:18
Alignment explanation
Indices: 823048--823083 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
823038 AAAATCAAAC
* *
823048 AAGATGATGATTATTAGA
1 AAGATGATGAATAATAGA
823066 AAGATGATGAATAATAGA
1 AAGATGATGAATAATAGA
823084 TAATAAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (18 bp):
AAGATGATGAATAATAGA
Found at i:823113 original size:29 final size:30
Alignment explanation
Indices: 823071--823130 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
823061 TTAGAAAGAT
* *
823071 GATGAATAATAGAT-AATAAATATATAAAA
1 GATGAATAAAAGATAAATAAAGATATAAAA
*
823100 GATGAATAAAAGATAAATAAAGATATGAAA
1 GATGAATAAAAGATAAATAAAGATATAAAA
823130 G
1 G
823131 TATTTGAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (30 bp):
GATGAATAAAAGATAAATAAAGATATAAAA
Found at i:833489 original size:21 final size:21
Alignment explanation
Indices: 833451--833490 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
833441 TGGGTTGGGG
**
833451 ATTTGAGGATTTTTGTTTTCA
1 ATTTGAGGATTTGGGTTTTCA
*
833472 ATTTGGGGATTTGGGTTTT
1 ATTTGAGGATTTGGGTTTT
833491 TATCCCTAGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.03, G:0.28, T:0.55
Consensus pattern (21 bp):
ATTTGAGGATTTGGGTTTTCA
Found at i:835801 original size:32 final size:32
Alignment explanation
Indices: 835763--835827 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
835753 TCGATCCTAT
835763 TGGGTCCTATTTTTTGTATTGCCGGTAAAATG
1 TGGGTCCTATTTTTTGTATTGCCGGTAAAATG
835795 TGGGTCCTATTTTTTGTATTGCCGGTAAAATG
1 TGGGTCCTATTTTTTGTATTGCCGGTAAAATG
835827 T
1 T
835828 ACTATTTTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.12, G:0.25, T:0.45
Consensus pattern (32 bp):
TGGGTCCTATTTTTTGTATTGCCGGTAAAATG
Found at i:842737 original size:33 final size:33
Alignment explanation
Indices: 842670--842758 Score: 124
Period size: 33 Copynumber: 2.6 Consensus size: 33
842660 TATGGAAACC
* *
842670 ATGTTTACCTGATATTTTTGGAGCTATTCATACT
1 ATGTTTACCTGATATTTTT-TAGCAATTCATACT
* *
842704 ATGTTTATCTAATATTTTTTAGCAATTCATACT
1 ATGTTTACCTGATATTTTTTAGCAATTCATACT
842737 ATGTTTACCTGATATTTCTTTA
1 ATGTTTACCTGATATTT-TTTA
842759 TCCAGTGTGT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
33 27 0.56
34 21 0.44
ACGTcount: A:0.26, C:0.13, G:0.10, T:0.51
Consensus pattern (33 bp):
ATGTTTACCTGATATTTTTTAGCAATTCATACT
Found at i:843468 original size:44 final size:44
Alignment explanation
Indices: 843420--843759 Score: 451
Period size: 44 Copynumber: 7.8 Consensus size: 44
843410 GCAAAAACGA
* *
843420 TAAGGTCTTATCCTTGCACATAGCAAAAGAGCCT-GGGGAAACTG
1 TAAGG-CTTACCCTTGCACACAGCAAAAGAGCCTGGGGGAAACTG
* *
843464 TAAGGCTTACCCTTGCACACAGCAAAGGAACCT--GGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAAGAGCCTGGGGGAAACTG
* * *
843506 TAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAAGAGCCTGGGGGAAACTG
* * *
843550 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGAGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAAGAGCCTGGGGGAAACTG
* *
843594 TAAGGCTTACCCTTGAACACAGC-AAAGGGACCTGGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAAGAG-CCTGGGGGAAACTG
*
843638 TAAGGCTTACCCTTGCACACAGC-AAAGGGACCTGGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAAGAG-CCTGGGGGAAACTG
*
843682 TAAGGCTTACCCTTGCACACA--ATAAAGGGACCTGGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCA-AAAGAG-CCTGGGGGAAACTG
*
843726 TAAGGCTTACCCTTGCACACAGCAAAGGAGCCTG
1 TAAGGCTTACCCTTGCACACAGCAAAAGAGCCTG
843760 CTGTAACGGT
Statistics
Matches: 274, Mismatches: 15, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
42 41 0.15
43 27 0.10
44 201 0.73
45 4 0.01
46 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.17
Consensus pattern (44 bp):
TAAGGCTTACCCTTGCACACAGCAAAAGAGCCTGGGGGAAACTG
Found at i:843633 original size:88 final size:87
Alignment explanation
Indices: 843420--843759 Score: 533
Period size: 88 Copynumber: 3.9 Consensus size: 87
843410 GCAAAAACGA
* * * *
843420 TAAGGTCTTATCCTTGCACATAGCAAA-AGAGCCT-GGGGAAACTGTAAGGCTTACCCTTGCACA
1 TAAGG-CTTACCCTTGCACACAACAAAGGGA-CCTGGGGGAAACTGTAAGGCTTACCCTTGCACA
843483 CAGCAAAGGAACCT-GGGAAACTG
64 CAGCAAAGGAACCTGGGGAAACTG
*
843506 TAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGGAAACTGTAAGGCTTACCCTTGCACACA
1 TAAGGCTTACCCTTGCACACAACAAAGGGACCTGGGGGAAACTGTAAGGCTTACCCTTGCACACA
843571 GCAAAGGAACCTGGAGGAAACTG
66 GCAAAGGAACCTGG-GGAAACTG
* *
843594 TAAGGCTTACCCTTGAACACAGCAAAGGGACCTGGGGGAAACTGTAAGGCTTACCCTTGCACACA
1 TAAGGCTTACCCTTGCACACAACAAAGGGACCTGGGGGAAACTGTAAGGCTTACCCTTGCACACA
*
843659 GCAAAGGGACCTGGGGGAAACTG
66 GCAAAGGAACCT-GGGGAAACTG
*
843682 TAAGGCTTACCCTTGCACACAATAAAGGGACCTGGGGGAAACTGTAAGGCTTACCCTTGCACACA
1 TAAGGCTTACCCTTGCACACAACAAAGGGACCTGGGGGAAACTGTAAGGCTTACCCTTGCACACA
*
843747 GCAAAGGAGCCTG
66 GCAAAGGAACCTG
843760 CTGTAACGGT
Statistics
Matches: 235, Mismatches: 14, Indels: 9
0.91 0.05 0.03
Matches are distributed among these distances:
85 21 0.09
86 49 0.21
87 2 0.01
88 161 0.69
89 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.17
Consensus pattern (87 bp):
TAAGGCTTACCCTTGCACACAACAAAGGGACCTGGGGGAAACTGTAAGGCTTACCCTTGCACACA
GCAAAGGAACCTGGGGAAACTG
Found at i:843677 original size:132 final size:129
Alignment explanation
Indices: 843420--843759 Score: 527
Period size: 132 Copynumber: 2.6 Consensus size: 129
843410 GCAAAAACGA
* * * *
843420 TAAGGTCTTATCCTTGCACATAGCAAAAGAGCCTGGGGAAACTGTAAGGCTTACCCTTGCACACA
1 TAAGG-CTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGCACACA
843485 GCAAAGGAACCTGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGGAAACTG
65 GCAAAGGAACCTGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGGAAACTG
*
843550 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGAGGAAACTGTAAGGCTTACCCTTGAACACA
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGG-GGAAACTGTAAGGCTTACCCTTGCACACA
* * *
843615 GCAAAGGGACCTGGGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGGACCTGGGGGAAAC
65 GCAAAGGAACCT--GGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGGAAAC
843680 TG
128 TG
** *
843682 TAAGGCTTACCCTTGCACACAATAAAGGGACCTGGGGGAAACTGTAAGGCTTACCCTTGCACACA
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCT-GGGGAAACTGTAAGGCTTACCCTTGCACACA
*
843747 GCAAAGGAGCCTG
65 GCAAAGGAACCTG
843760 CTGTAACGGT
Statistics
Matches: 192, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
129 26 0.14
130 45 0.23
132 119 0.62
133 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.17
Consensus pattern (129 bp):
TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGCACACAG
CAAAGGAACCTGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGGAAACTG
Found at i:844587 original size:44 final size:43
Alignment explanation
Indices: 844474--844819 Score: 453
Period size: 44 Copynumber: 8.0 Consensus size: 43
844464 AGCAAAAAAG
844474 CCTGGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAA
1 CCTGGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAA
*
844517 CCT-GGGAAACTGTAAGACTTACCCTTGCACACAGCAAAGGAA
1 CCTGGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAA
* * *
844559 CCTAGGAGAAACTGTAAGGCTTAACCTTGCACACAGCAAAAGAA
1 CCT-GGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAA
* * *
844603 CCTGGAGGAAACTGTAAGGCTTACCCTTGAACATAG-AAAAGAGA
1 CCTGG-GGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGA-A
* * * * *
844647 CATGGGGGAAACTGTAAAGCTTACCCTTGCACACAACATAGGGA
1 CCT-GGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAA
* *
844691 CCTGGGGAAACTGTAAGGTTTACCCTTGCACACAGCAAAGGGA
1 CCTGGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAA
** * *
844734 GATGTGGAAACTGTAAGGCTTACCATTGCACACAGCAAAGGAA
1 CCTGGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAA
* *
844777 CCCGGGGGAAACTGTAAGGCTTACCCTTGCACAAAGCAAAGGA
1 -CCTGGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGA
844820 GCCTACTGTA
Statistics
Matches: 262, Mismatches: 34, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
42 41 0.16
43 84 0.32
44 132 0.50
45 5 0.02
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (43 bp):
CCTGGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAA
Found at i:844743 original size:130 final size:132
Alignment explanation
Indices: 844449--844824 Score: 446
Period size: 130 Copynumber: 2.9 Consensus size: 132
844439 ACGATAATCT
* * * *
844449 CTTATCCTTGAACATAGCAAAA-AAGCCTGG-GGAAACTGTAAGGCTTACCCTTGCACACAGCAA
1 CTTAACCTTGCACACAGCAAAAGAA-CATGGAGGAAACTGTAAGGCTTACCCTTGCACACAGCAA
*
844512 AGGAACCT--GGGAAACTGT-AAGACTTACCCTTGCACACAGCAAAGGAACCTAGGAGAAACTGT
65 AGGAACCTGGGGGAAACTGTAAAG-CTTACCCTTGCACACAACAAAGGAACCTAGGAGAAACTGT
844574 AAGG
129 AAGG
* * *
844578 CTTAACCTTGCACACAGCAAAAGAACCTGGAGGAAACTGTAAGGCTTACCCTTGAACATAG-AAA
1 CTTAACCTTGCACACAGCAAAAGAACATGGAGGAAACTGTAAGGCTTACCCTTGCACACAGCAAA
* * * * *
844642 AGAGACATGGGGGAAACTGTAAAGCTTACCCTTGCACACAACATAGGGACCT-GGGGAAACTGTA
66 GGA-ACCTGGGGGAAACTGTAAAGCTTACCCTTGCACACAACAAAGGAACCTAGGAGAAACTGTA
844706 AGG
130 AGG
* * * * * * *
844709 TTTACCCTTGCACACAGCAAAGGGAGAT-GTGGAAACTGTAAGGCTTACCATTGCACACAGCAAA
1 CTTAACCTTGCACACAGCAAAAGAACATGGAGGAAACTGTAAGGCTTACCCTTGCACACAGCAAA
* * *
844773 GGAACCCGGGGGAAACTGTAAGGCTTACCCTTGCACA-AAGCAAAGGAGCCTA
66 GGAACCTGGGGGAAACTGTAAAGCTTACCCTTGCACACAA-CAAAGGAACCTA
844825 CTGTAACGAT
Statistics
Matches: 210, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
129 31 0.15
130 100 0.48
131 41 0.20
132 35 0.17
133 3 0.01
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (132 bp):
CTTAACCTTGCACACAGCAAAAGAACATGGAGGAAACTGTAAGGCTTACCCTTGCACACAGCAAA
GGAACCTGGGGGAAACTGTAAAGCTTACCCTTGCACACAACAAAGGAACCTAGGAGAAACTGTAA
GG
Found at i:844767 original size:174 final size:173
Alignment explanation
Indices: 844449--844816 Score: 510
Period size: 174 Copynumber: 2.1 Consensus size: 173
844439 ACGATAATCT
* * * *
844449 CTTATCCTTGAACATAGCAAAAAAGCCTGGGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAG
1 CTTACCCTTGAACATAGCAAAAAAGCATGGGGAAACTGTAAAGCTTACCCTTGCACACAACAAAG
*
844514 GAACCTGGGAAACTGTAAGACTTACCCTTGCACACAGCAAAGGAACCTAGGAGAAACTGTAAGGC
66 GAACCTGGGAAACTGTAAGACTTACCCTTGCACACAGCAAAGGAACATAGGAGAAACTGTAAGGC
*
844579 TTAACCTTGCACACAGCAAAAGAACCTGGAGGAAACTGTAAGG
131 TTAACCTTGCACACAGCAAAAGAACCCGGAGGAAACTGTAAGG
* *
844622 CTTACCCTTGAACATAG-AAAAGAGACATGGGGGAAACTGTAAAGCTTACCCTTGCACACAACAT
1 CTTACCCTTGAACATAGCAAAAAAG-CAT-GGGGAAACTGTAAAGCTTACCCTTGCACACAACAA
* ** * *
844686 AGGGACCTGGGGAAACTGTAAGGTTTACCCTTGCACACAGCAAAGGGAGAT-GTG-GAAACTGTA
64 AGGAACCT-GGGAAACTGTAAGACTTACCCTTGCACACAGCAAAGGAACATAG-GAGAAACTGTA
* *
844749 AGGCTT-ACCATTGCACACAGCAAAGGAACCCGGGGGAAACTGTAAGG
127 AGGCTTAACC-TTGCACACAGCAAAAGAACCCGGAGGAAACTGTAAGG
* *
844796 CTTACCCTTGCACAAAGCAAA
1 CTTACCCTTGAACATAGCAAA
844817 GGAGCCTACT
Statistics
Matches: 172, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
172 6 0.03
173 21 0.12
174 104 0.60
175 41 0.24
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (173 bp):
CTTACCCTTGAACATAGCAAAAAAGCATGGGGAAACTGTAAAGCTTACCCTTGCACACAACAAAG
GAACCTGGGAAACTGTAAGACTTACCCTTGCACACAGCAAAGGAACATAGGAGAAACTGTAAGGC
TTAACCTTGCACACAGCAAAAGAACCCGGAGGAAACTGTAAGG
Found at i:846813 original size:44 final size:43
Alignment explanation
Indices: 846777--847149 Score: 460
Period size: 44 Copynumber: 8.5 Consensus size: 43
846767 AGGTCTTATT
* * *
846777 CTTGCACATAGCAAAAGAGCCTGGGGAAACTGTAAGGCTTACC
1 CTTGCACACAGCAAAGGAACCTGGGGAAACTGTAAGGCTTACC
846820 CTTGCACACAGCAAAGGAACCT-GGGAAACTGTAAGGCTTACC
1 CTTGCACACAGCAAAGGAACCTGGGGAAACTGTAAGGCTTACC
*
846862 CTTGCACTCAGCAAAGGAACCTGGGAGAAACTGTAAGGCTTACC
1 CTTGCACACAGCAAAGGAACCTGGG-GAAACTGTAAGGCTTACC
* *
846906 CTTGCACACATCAAAGGAACCTGGAGGAAACTTTTTAAGGCTTACC
1 CTTGCACACAGCAAAGGAACCTGG-GGAAAC--TGTAAGGCTTACC
* * * * *
846952 CTTGAACACAGTAAAGGGACATGGGGGAAACTGTAAAGCTTACC
1 CTTGCACACAGCAAAGGAACCT-GGGGAAACTGTAAGGCTTACC
* * * *
846996 CTTGTACACAGCAAAGGGACTTGGGGAAAACTGTAAGGTTTACC
1 CTTGCACACAGCAAAGGAACCTGGGG-AAACTGTAAGGCTTACC
* * * ** *
847040 CTTTCACACAACAAAGGGAGTTGTGGAAACTGTAAGGCTTACC
1 CTTGCACACAGCAAAGGAACCTGGGGAAACTGTAAGGCTTACC
* *
847083 CTTGCACACAACAAATGAACCTGGGGGAAACTGTAAGGCTTACC
1 CTTGCACACAGCAAAGGAACCT-GGGGAAACTGTAAGGCTTACC
*
847127 CTTGCACACAGCAAAGGAGCCTG
1 CTTGCACACAGCAAAGGAACCTG
847150 CTGTAACGGT
Statistics
Matches: 288, Mismatches: 34, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
42 41 0.14
43 59 0.20
44 150 0.52
45 1 0.00
46 35 0.12
47 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (43 bp):
CTTGCACACAGCAAAGGAACCTGGGGAAACTGTAAGGCTTACC
Found at i:846997 original size:134 final size:131
Alignment explanation
Indices: 846797--847149 Score: 462
Period size: 134 Copynumber: 2.7 Consensus size: 131
846787 GCAAAAGAGC
846797 CTGG-GGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAACCT--GGGAAACTGTAAGGCTT
1 CTGGAGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGGAAACTGTAAGGCTT
* *
846859 ACCCTTGCACTCAGCAAAGGAACCT-GGGAGAAACTGTAAGGCTTACCCTTGCACACATCAAAGG
66 ACCCTTGCACACAGCAAAGGAACCTGGGGA-AAACTGTAAGGCTTACCCTTGCACACAACAAAGG
846923 AA
130 AA
* * * * * *
846925 CCTGGAGGAAACTTTTTAAGGCTTACCCTTGAACACAGTAAAGGGACATGGGGGAAACTGTAAAG
1 -CTGGAGGAAAC--TGTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGGAAACTGTAAGG
* * * * *
846990 CTTACCCTTGTACACAGCAAAGGGACTTGGGGAAAACTGTAAGGTTTACCCTTTCACACAACAAA
63 CTTACCCTTGCACACAGCAAAGGAACCTGGGGAAAACTGTAAGGCTTACCCTTGCACACAACAAA
*
847055 GGGA
128 GGAA
* * * * *
847059 GTTGTGGAAACTGTAAGGCTTACCCTTGCACACAACAAATGAACCTGGGGGAAACTGTAAGGCTT
1 CTGGAGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGGAAACTGTAAGGCTT
*
847124 ACCCTTGCACACAGCAAAGGAGCCTG
66 ACCCTTGCACACAGCAAAGGAACCTG
847150 CTGTAACGGT
Statistics
Matches: 189, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
129 4 0.02
130 6 0.03
131 68 0.36
132 30 0.16
133 8 0.04
134 69 0.37
135 4 0.02
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.20
Consensus pattern (131 bp):
CTGGAGGAAACTGTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGGAAACTGTAAGGCTT
ACCCTTGCACACAGCAAAGGAACCTGGGGAAAACTGTAAGGCTTACCCTTGCACACAACAAAGGA
A
Found at i:849227 original size:43 final size:43
Alignment explanation
Indices: 849168--849462 Score: 353
Period size: 44 Copynumber: 6.8 Consensus size: 43
849158 GCAAAAACGA
* * *
849168 TAAGGTCTTATCCTTGCACATAGCAAAAGAGCCTGGGGAAACTG
1 TAAGG-CTTACCCTTGCACACAGCAAAGGAGCCTGGGGAAACTG
* * * * * **
849212 TAAGGCTTATCCTTGCACACAACAAAAGA-ACTTGGTTAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAGCCTGGGGAAACTG
* * *
849254 TAAGGCTTACCCTTGCATACAACAAAGGAACCTGGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAGCCT-GGGGAAACTG
* * * *
849298 TAAGGCTTACCCTTGCACACAACAAAGGATCTTGGAGGAAACTA
1 TAAGGCTTACCCTTGCACACAGCAAAGGAGCCTGG-GGAAACTG
*
849342 TAAGGCTTACCCTTGAACACAGCAAAGG-GACCTGGGGAAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAG-CCTGGGG-AAACTG
849386 TAAGGCTTACCCTTGCACACAGCAAAGGGAG-CTGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAA-GGAGCCTGGGGAAACTG
849429 TAAGGCTTACCCTTGCACACAGCAAAGGAGCCTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAGCCTG
849463 CTGTAACGGT
Statistics
Matches: 220, Mismatches: 23, Indels: 17
0.85 0.09 0.07
Matches are distributed among these distances:
42 39 0.18
43 63 0.29
44 115 0.52
45 2 0.01
46 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (43 bp):
TAAGGCTTACCCTTGCACACAGCAAAGGAGCCTGGGGAAACTG
Found at i:851626 original size:44 final size:43
Alignment explanation
Indices: 851487--851823 Score: 471
Period size: 44 Copynumber: 7.8 Consensus size: 43
851477 GATAAGGTTT
*
851487 TAAGGCTTACCCTTGCACACAACAAAGGAACCT-GGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACTG
851529 TAAGGCTTACCCTTGCACACAGCAAAGGAACCT-GGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACTG
851571 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGAGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGG-GGAAACTG
* *
851615 TAAGGCTTACCCTTGAACACAGCAAAGGGACCTGGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCT-GGGGAAACTG
* * * *
851659 TAATGCTTACCCTTGTACACTGCAAAGGTACCTGGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCT-GGGGAAACTG
* * * * *
851703 TAAGGTTTACCCTTGCACACAACAAAGGGAGCTGGGGAAATTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACTG
* *
851746 TAAGGCTTACCCTCGCACACAGCAAAGGAACATGGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCT-GGGGAAACTG
* * *
851790 TAAGGTTTACCCTTGCACACAACAAAGGATCCTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTG
851824 CTGTAATGGT
Statistics
Matches: 264, Mismatches: 27, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
42 74 0.28
43 38 0.14
44 150 0.57
45 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (43 bp):
TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACTG
Found at i:853588 original size:2 final size:2
Alignment explanation
Indices: 853581--853623 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
853571 TTAATTATTA
853581 AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
853622 AT
1 AT
853624 GAAAAATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:853605 original size:21 final size:21
Alignment explanation
Indices: 853579--853622 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
853569 TTTTAATTAT
853579 TAATATATATATATATATATA
1 TAATATATATATATATATATA
853600 TAATATATATATATATATATA
1 TAATATATATATATATATATA
853621 TA
1 TA
853623 TGAAAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TAATATATATATATATATATA
Found at i:858024 original size:24 final size:24
Alignment explanation
Indices: 857985--858048 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
857975 AACATTAATT
* *
857985 AGAAATTATAACAGAATTCATA-TC
1 AGAAATCATAACAGAATCCA-ACTC
*
858009 AGATATCATAACAGAATCCAACTC
1 AGAAATCATAACAGAATCCAACTC
*
858033 AGAAATCAGAACAGAA
1 AGAAATCATAACAGAA
858049 ATCAAATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 1 0.03
24 33 0.97
ACGTcount: A:0.52, C:0.17, G:0.11, T:0.20
Consensus pattern (24 bp):
AGAAATCATAACAGAATCCAACTC
Found at i:861134 original size:24 final size:24
Alignment explanation
Indices: 861076--861137 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
861066 GAAATCAAAA
*
861076 ATCAGAAATCAGAATAGAATTCAG
1 ATCAGAAATCAGAATAGAATCCAG
* * *
861100 ATCATATATCATAATAGAATCCAG
1 ATCAGAAATCAGAATAGAATCCAG
* *
861124 CTTAGAAATCAGAA
1 ATCAGAAATCAGAA
861138 CAAAAATCAT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.48, C:0.15, G:0.13, T:0.24
Consensus pattern (24 bp):
ATCAGAAATCAGAATAGAATCCAG
Found at i:865586 original size:16 final size:17
Alignment explanation
Indices: 865553--865585 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
865543 ACTTTGATCC
865553 AAAAAAGTCAAATTTTT
1 AAAAAAGTCAAATTTTT
*
865570 AAAAAAGTCATATTTT
1 AAAAAAGTCAAATTTT
865586 ATGTTTTTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (17 bp):
AAAAAAGTCAAATTTTT
Found at i:869842 original size:21 final size:21
Alignment explanation
Indices: 869816--869856 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
869806 CAGAATAGGG
*
869816 GGAATCGGTACCCCTTCATAT
1 GGAATCGATACCCCTTCATAT
869837 GGAATCGATACCCCTTCATA
1 GGAATCGATACCCCTTCATA
869857 ATATTCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (21 bp):
GGAATCGATACCCCTTCATAT
Done.