genome.fa.s8984.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008984.1 Hibiscus syriacus cultivar Beakdansim tig00112348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146169

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1917--2007	29	3.1	28	72	7	83	46	3	14	36	1.61
1856--2009	58	2.6	59	78	9	172	44	3	16	35	1.67
2514--2554	20	2.0	21	85	4	57	46	0	0	53	1.00
3372--3647	150	1.9	143	84	5	372	37	9	7	45	1.65
9029--9073	18	2.5	17	82	13	54	84	4	11	0	0.76
11197--11419	114	2.0	114	91	0	365	33	15	21	30	1.94
14323--14644	164	2.0	164	93	2	549	35	13	13	37	1.84
14647--14832	76	2.4	76	92	3	320	25	20	20	32	1.97
14961--15040	3	26.7	3	77	9	74	41	0	0	58	0.98
15574--15608	13	2.7	13	95	0	61	45	22	31	0	1.53
16587--16884	150	2.0	147	87	5	424	36	9	7	46	1.63
23993--24045	20	2.7	20	96	0	97	39	20	20	18	1.92
24045--24098	20	2.7	20	100	0	108	29	25	18	25	1.98
24933--24986	24	2.2	24	90	0	81	22	16	20	40	1.91
27406--27494	20	4.4	20	90	2	135	35	25	21	16	1.94
27516--27611	33	2.9	34	90	3	149	13	22	20	42	1.87
27583--27621	20	1.9	21	94	5	71	15	17	23	43	1.87
29081--29192	42	2.7	42	76	5	111	22	17	38	21	1.93
29676--29740	20	3.2	20	88	0	94	36	23	20	20	1.95
29789--29941	20	8.3	20	75	20	120	18	18	21	41	1.90
31826--31914	20	4.5	20	84	1	99	44	22	16	15	1.86
32251--32316	22	3.0	22	82	8	80	22	13	36	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32495--32585	20	4.6	20	87	5	78	20	19	23	36	1.95
32582--32627	21	2.2	21	92	0	74	43	17	23	15	1.87
35649--35706	30	1.9	30	89	6	91	70	8	6	13	1.32
40518--40614	30	3.2	30	88	1	131	32	23	19	23	1.97
41251--41308	20	2.7	20	84	10	71	25	20	20	32	1.97
41296--41436	64	2.2	62	80	7	158	26	21	17	33	1.96
41916--41958	3	14.3	3	95	0	77	69	0	30	0	0.88
44801--44928	30	4.2	30	89	1	184	32	24	18	24	1.97
44888--44964	31	2.5	32	81	8	88	29	20	16	32	1.95
45565--45622	20	2.7	20	84	10	71	25	20	20	32	1.97
45610--45750	64	2.2	62	80	7	158	26	21	17	33	1.96
49548--49608	27	2.3	27	100	0	122	27	31	16	24	1.96
57314--57378	31	2.1	31	94	0	112	35	16	26	21	1.95
57787--57854	31	2.1	33	86	5	95	38	5	4	51	1.46
58418--58500	30	2.8	30	92	0	139	6	25	24	44	1.76
65987--66080	28	3.2	28	71	14	82	36	11	15	36	1.85
66674--66735	31	2.0	31	84	6	81	35	4	17	41	1.71
69230--69387	60	2.6	60	78	5	176	38	5	23	32	1.78
70525--70558	14	2.4	14	90	9	52	55	0	29	14	1.40
79572--79613	19	2.2	19	91	0	66	28	30	23	16	1.96
82442--82601	65	2.5	65	85	5	209	27	20	23	29	1.98
83692--83756	21	3.1	21	88	0	94	32	16	40	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85310--85366	21	2.6	22	83	5	80	28	21	22	28	1.99
85314--85385	21	3.4	21	81	9	76	26	18	25	30	1.98
87856--87919	35	1.9	34	84	9	87	48	6	17	28	1.71
91849--91888	21	1.9	21	89	0	62	25	35	25	15	1.94
94683--94989	154	2.0	154	96	1	571	41	16	14	28	1.87
98444--98483	21	1.9	21	85	10	55	35	10	2	52	1.48
100386--100531	64	2.2	66	85	4	190	26	20	23	28	1.99
100779--100855	30	2.6	30	82	0	100	33	29	10	25	1.89
107216--107284	30	2.3	30	87	7	104	26	24	15	33	1.95
107890--108047	63	2.5	62	79	9	176	27	19	22	30	1.98
112335--112373	12	3.2	12	85	7	51	10	12	0	76	1.01
112338--112371	13	2.6	13	95	0	59	11	8	0	79	0.94
114408--114621	6	36.0	6	98	1	414	50	16	0	33	1.46
121247--121286	16	2.6	15	85	14	55	25	0	2	72	0.97
131023--131057	17	2.0	18	94	5	63	74	0	5	20	1.02
136110--136167	30	2.0	29	83	10	73	10	8	10	70	1.34
144687--144716	13	2.4	13	94	5	53	43	0	30	26	1.55

Tables:   1

The End!