genome.fa.s8987.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008987.1 Hibiscus syriacus cultivar Beakdansim tig00112352_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  239634

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3561--3600	21	1.9	21	85	10	55	35	10	2	52	1.48
5793--5858	30	2.2	30	97	2	123	40	12	6	40	1.67
6128--6190	21	2.9	21	88	4	90	52	15	15	15	1.75
6128--6193	23	3.0	23	88	4	100	51	15	15	18	1.77
6483--6599	44	2.7	44	87	9	177	52	2	5	39	1.40
7281--7326	24	1.9	24	95	0	83	39	17	0	43	1.49
10959--11003	21	2.1	21	83	0	54	26	51	22	0	1.49
13116--13146	16	1.9	16	93	0	53	64	6	0	29	1.18
16595--16666	35	2.2	32	87	7	99	22	29	13	34	1.93
16949--16990	21	2.0	21	90	0	66	26	26	21	26	1.99
17188--17247	29	2.0	31	90	6	97	41	16	6	35	1.75
20050--20120	34	2.1	34	84	5	92	21	29	14	35	1.92
20403--20444	21	2.0	21	95	0	75	26	28	21	23	1.99
20550--20596	19	2.5	19	85	0	58	38	14	8	38	1.77
20661--20720	29	2.0	31	90	6	97	41	16	6	35	1.75
23708--23748	21	2.0	21	90	9	66	68	7	4	19	1.32
23767--23805	13	2.9	13	81	7	51	79	0	0	20	0.73
25107--25188	29	2.8	29	90	1	119	32	13	10	42	1.79
29876--29957	29	2.8	29	92	1	128	32	14	10	41	1.81
31546--31628	29	2.9	29	83	0	94	18	39	28	13	1.88
31772--31828	29	2.0	29	89	6	89	10	31	35	22	1.88
34670--34714	21	2.1	21	83	0	54	26	51	22	0	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38269--38306	2	19.0	2	100	0	76	50	0	0	50	1.00
39278--39335	20	2.7	20	84	10	62	24	20	20	34	1.97
41376--41443	23	2.9	23	69	20	59	39	17	1	41	1.59
43301--43378	20	3.7	20	93	6	120	25	23	20	30	1.98
46420--46464	21	2.1	21	83	0	54	26	51	22	0	1.49
46852--46902	14	3.6	14	75	15	52	39	0	1	58	1.09
49070--49128	29	2.0	29	96	0	109	47	15	13	23	1.81
56713--56804	23	4.0	23	88	0	121	26	25	28	20	1.99
57010--57074	30	2.2	30	86	5	87	30	23	4	41	1.74
57920--57975	25	2.2	25	84	6	69	23	21	3	51	1.63
57930--57981	25	2.1	25	96	0	95	21	19	7	51	1.71
63620--63688	23	3.0	23	86	0	102	26	26	27	20	1.99
63903--63960	30	1.9	30	89	6	91	31	22	3	43	1.70
70773--70858	45	1.9	45	92	0	145	22	25	27	24	1.99
76580--77166	135	4.4	132	88	4	757	22	24	23	29	1.99
76739--77166	135	3.2	135	98	0	811	22	24	24	28	2.00
78183--78231	19	2.6	19	74	6	55	42	4	0	53	1.20
78925--78953	4	7.2	4	100	0	58	24	0	0	75	0.80
92160--92264	39	2.7	39	93	0	183	28	11	13	46	1.77
97203--97283	31	2.6	31	94	0	135	43	8	22	25	1.82
97596--97640	23	2.0	23	86	0	63	60	8	8	22	1.55
114883--114983	49	2.1	49	84	0	130	42	18	19	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115387--115412	2	13.0	2	100	0	52	50	0	0	50	1.00
115484--115550	33	2.0	33	100	0	134	49	20	8	20	1.76
123624--123752	63	2.0	63	88	2	188	31	17	28	22	1.96
125104--125147	22	2.0	23	90	4	72	29	6	15	47	1.72
135102--135414	171	1.8	171	83	5	418	41	16	11	30	1.83
136553--136658	54	2.0	54	98	0	203	30	22	12	34	1.91
137512--137572	24	2.5	24	83	0	68	11	6	63	18	1.47
137536--137603	21	3.2	21	73	8	57	10	8	60	20	1.56
137598--137903	30	10.1	30	68	6	177	13	9	54	22	1.67
137602--137899	60	4.9	59	70	8	233	13	10	54	22	1.68
137578--137741	90	1.8	90	87	0	247	12	10	54	21	1.69
137603--137909	120	2.5	120	93	1	506	13	10	54	22	1.68
137883--137921	12	3.2	12	85	0	60	23	12	58	5	1.54
137875--137939	24	2.7	23	76	9	67	16	10	56	15	1.66
137603--137950	120	2.9	117	84	7	421	13	10	54	21	1.68
144294--144323	15	2.0	15	93	0	51	70	6	0	23	1.11
144955--144988	2	17.0	2	93	0	59	47	0	2	50	1.16
145614--145653	20	2.0	20	90	0	62	10	25	17	47	1.78
145778--145802	6	4.2	6	100	0	50	36	48	16	0	1.46
146314--146404	41	2.2	43	86	4	123	37	25	12	25	1.90
150081--150159	40	1.9	42	87	5	117	56	5	2	35	1.35
150074--150140	14	5.0	13	72	18	57	59	4	1	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154105--154143	20	2.0	20	84	0	51	28	0	0	71	0.86
154116--154143	10	2.8	10	100	0	56	21	0	0	78	0.75
154105--154355	72	3.4	71	72	12	188	38	3	3	53	1.38
156876--156917	18	2.3	19	91	4	68	40	16	14	28	1.88
158042--158076	7	5.0	7	100	0	70	28	42	0	28	1.56
159937--159986	19	2.7	19	73	14	50	50	2	2	46	1.24
163874--163908	2	17.5	2	100	0	70	51	0	0	48	1.00
165345--165495	6	25.2	6	97	0	284	31	1	50	16	1.54
167749--167786	19	2.1	19	90	5	60	60	0	0	39	0.97
170085--170109	3	8.3	3	100	0	50	0	0	32	68	0.90
175356--175665	38	8.5	37	74	13	152	44	7	3	44	1.49
175355--175665	36	8.5	36	73	15	210	44	7	3	44	1.50
175460--175642	74	2.5	73	83	5	208	43	8	3	44	1.53
175502--175642	76	1.9	75	83	5	187	43	9	4	43	1.56
176292--177296	165	6.1	165	81	3	1039	24	20	24	30	1.99
176267--177296	245	4.2	245	93	1	1632	24	20	24	30	1.99
180336--180380	19	2.4	19	92	3	74	66	8	13	11	1.44
182255--182285	16	1.9	16	100	0	62	70	0	0	29	0.87
183511--183556	20	2.4	18	89	10	65	63	6	0	30	1.20
183652--183738	40	2.2	40	86	6	117	44	3	3	48	1.36
183542--183873	38	9.4	34	72	18	143	43	7	3	45	1.48
183733--183815	32	2.5	32	83	16	91	39	10	3	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183676--183873	106	1.9	108	87	4	294	40	8	3	47	1.51
187101--187500	200	2.0	200	97	0	755	44	14	20	21	1.87
188185--188219	16	2.2	16	100	0	70	42	20	0	37	1.52
199850--200216	191	1.9	188	90	3	585	28	24	17	29	1.97
199836--200216	96	4.0	96	91	2	585	28	24	18	29	1.98
203058--203129	36	2.0	35	89	2	108	45	20	19	13	1.84
206713--206946	116	2.0	116	97	0	441	28	29	17	25	1.97
217026--217067	21	2.0	21	95	0	75	50	23	11	14	1.76
217512--217554	18	2.4	18	88	0	59	34	0	11	53	1.37
236686--236710	3	8.3	3	100	0	50	32	32	36	0	1.58

Tables:   1

The End!