genome.fa.s8988.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008988.1 Hibiscus syriacus cultivar Beakdansim tig00112353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  339899

Tables:   1   

This is table  1  of  1  ( 120 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2436--2508	2	37.0	2	97	2	139	49	0	0	50	1.00
6024--6066	17	2.4	16	82	17	50	23	4	6	65	1.37
13467--13527	31	2.0	31	100	0	122	29	19	6	44	1.76
16309--16446	68	2.0	68	98	0	267	35	26	11	26	1.91
19678--19720	2	21.5	2	100	0	86	48	0	0	51	1.00
23992--24032	21	2.0	21	90	0	64	41	14	0	43	1.45
24490--24537	24	2.0	23	84	11	62	56	2	2	39	1.23
37706--37769	27	2.4	27	82	7	76	37	14	25	23	1.92
39406--39457	27	1.9	27	96	0	95	19	17	51	11	1.75
39433--39577	42	3.5	42	88	3	202	17	22	43	15	1.87
39651--39842	36	5.2	36	91	1	294	19	6	58	16	1.59
40760--40894	18	7.6	18	93	3	220	24	21	24	29	1.99
51324--51452	59	2.2	60	78	4	136	34	19	5	40	1.75
53626--53990	181	2.0	182	88	3	549	42	11	16	28	1.84
53989--54052	30	2.1	30	97	0	119	42	9	10	37	1.73
54410--54447	18	2.1	18	95	0	67	76	5	0	18	0.97
54398--54447	18	2.7	19	81	6	66	72	10	0	18	1.12
57938--57970	15	2.1	17	88	11	52	45	0	15	39	1.46
66091--66438	173	2.0	170	93	6	594	29	24	14	32	1.94
70193--70251	29	2.0	29	96	0	109	47	13	15	23	1.81
72450--72474	12	2.1	12	100	0	50	20	16	24	40	1.91
84934--84973	18	2.2	18	100	0	80	52	27	0	20	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90661--90697	19	1.9	19	89	10	58	21	29	21	27	1.99
98728--98780	24	2.2	24	100	0	106	18	33	16	30	1.94
105577--105690	6	19.7	6	91	7	155	0	43	0	56	0.99
107675--107710	17	2.1	17	90	10	56	41	0	5	52	1.24
108778--108859	37	2.2	37	93	0	137	28	19	26	25	1.99
129423--129551	59	2.2	59	95	2	233	48	19	7	24	1.75
131845--131869	11	2.3	11	100	0	50	28	28	16	28	1.97
135430--135473	18	2.6	16	82	10	52	45	0	18	36	1.49
135437--135473	16	2.2	18	85	9	51	45	0	16	37	1.47
147410--147454	16	2.7	17	82	6	56	37	2	0	60	1.09
149652--149736	35	2.4	32	75	17	80	27	5	10	56	1.56
155766--155818	21	2.5	21	87	0	79	22	22	16	37	1.94
155808--155858	20	2.5	20	96	0	93	37	19	21	21	1.95
155847--155919	20	3.7	20	94	0	128	28	28	19	23	1.98
155827--155918	40	2.3	40	83	3	114	31	26	19	22	1.98
156749--156804	24	2.3	24	87	0	85	23	17	17	41	1.90
159059--159093	18	1.9	18	94	0	61	54	25	2	17	1.57
159264--159374	20	5.8	20	78	12	126	32	22	18	26	1.97
159264--159443	74	2.4	75	84	6	226	32	23	20	23	1.98
159592--159630	14	2.8	14	96	0	69	46	17	0	35	1.49
161031--161140	42	2.6	42	75	5	107	22	19	37	20	1.94
161699--161744	20	2.3	20	96	0	83	17	19	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161896--161941	18	2.6	18	96	0	83	43	2	21	32	1.65
163658--163743	19	4.4	20	84	7	106	48	24	15	11	1.77
164125--164181	22	2.6	22	82	0	78	19	19	40	21	1.92
164348--164421	20	3.7	20	90	0	121	27	20	25	27	1.99
164410--164460	20	2.5	20	100	0	102	23	21	17	37	1.94
164457--164502	21	2.2	21	92	0	74	36	19	26	17	1.94
176590--176619	2	15.0	2	92	0	51	50	0	3	46	1.18
187819--187866	21	2.2	21	88	3	69	25	12	27	35	1.92
191315--191355	18	2.3	18	91	4	66	29	4	2	63	1.28
193034--193073	18	2.2	18	90	0	62	25	32	20	22	1.98
193552--193623	26	3.0	24	68	27	62	26	5	4	63	1.34
199981--200025	24	1.9	24	82	13	58	60	4	2	33	1.29
200691--200734	18	2.4	18	81	14	54	63	2	2	31	1.19
205976--206014	20	1.9	20	89	5	60	48	2	2	46	1.29
209967--210037	29	2.4	29	95	0	133	32	25	11	30	1.91
221005--221048	23	1.9	23	90	0	70	31	45	4	18	1.69
221818--221878	23	2.7	23	89	0	86	22	26	29	21	1.99
223488--223521	8	4.2	8	88	0	50	23	14	23	38	1.92
224186--224214	2	14.5	2	100	0	58	48	0	0	51	1.00
225171--225207	19	2.0	19	89	5	58	0	13	13	72	1.11
225575--225619	3	14.3	3	81	9	54	60	0	0	40	0.97
225575--225619	16	2.9	16	80	3	56	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225588--225627	19	2.1	19	90	9	64	52	0	0	47	1.00
225575--225621	13	3.7	13	75	16	53	59	0	0	40	0.97
226530--226596	23	2.9	23	100	0	134	26	25	25	22	2.00
229442--230141	199	3.5	197	81	4	827	38	14	15	31	1.87
230159--230325	87	1.9	86	93	1	289	34	12	10	42	1.78
230243--230287	23	2.0	23	90	0	72	37	17	8	35	1.81
230770--230811	20	2.2	19	86	4	57	45	0	0	54	0.99
242511--242614	28	3.7	28	98	0	199	35	15	17	31	1.91
243715--243763	21	2.3	21	85	3	62	28	10	44	16	1.80
243802--243838	19	1.9	19	100	0	74	48	10	18	21	1.78
265795--265865	31	2.2	32	95	5	135	33	16	11	38	1.85
270543--270599	26	2.2	26	81	9	62	50	3	1	43	1.29
279427--279474	24	2.0	23	88	4	69	29	27	22	20	1.99
279447--279645	17	11.6	17	83	3	247	31	27	16	24	1.96
279499--279553	29	1.9	28	88	3	83	30	25	16	27	1.96
282088--282184	7	13.9	7	77	16	94	49	29	2	18	1.59
282088--282187	35	2.9	35	83	3	130	49	30	2	19	1.59
282088--282184	21	4.6	21	83	7	108	49	29	2	18	1.59
282265--282294	14	2.1	14	93	0	51	43	0	6	50	1.28
285854--285915	23	2.7	23	82	0	88	29	25	24	20	1.99
286784--286841	3	19.7	3	80	16	68	34	0	0	65	0.93
288553--288593	11	3.2	13	80	13	50	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290951--291014	28	2.3	27	81	5	74	18	21	25	34	1.96
292556--292589	15	2.3	15	100	0	68	17	11	20	50	1.77
292694--292760	35	1.9	35	84	6	91	26	19	20	32	1.97
294435--294512	23	3.3	23	81	1	93	32	23	20	24	1.98
294522--294839	103	3.1	103	95	0	555	37	24	11	27	1.90
295576--295695	64	1.9	62	86	3	168	27	18	19	35	1.95
295576--295732	64	2.5	64	82	4	165	27	19	19	33	1.96
297889--297918	16	1.9	16	93	6	53	56	0	0	43	0.99
299736--299795	17	3.4	17	71	13	57	43	0	3	53	1.17
299660--299833	38	4.6	38	81	6	178	41	4	5	48	1.46
299660--299833	75	2.3	76	84	5	221	41	4	5	48	1.46
299696--299835	37	3.8	37	80	4	140	42	3	5	47	1.44
309727--310054	103	3.2	103	96	0	602	25	12	24	37	1.90
310064--310131	23	3.0	23	84	0	91	17	25	26	30	1.97
313729--313757	4	7.2	4	100	0	58	72	0	27	0	0.85
323321--323414	10	9.4	10	69	0	53	26	6	25	41	1.79
323370--323593	20	11.3	20	71	11	120	22	4	29	43	1.74
323298--323395	40	2.4	41	77	9	103	25	6	26	41	1.78
323436--323528	30	3.4	30	64	32	82	19	6	27	46	1.74
323425--323544	50	2.4	50	95	2	215	20	5	29	45	1.71
323370--323603	10	23.7	9	68	17	67	21	5	29	44	1.74
323500--323586	39	2.2	40	85	2	122	20	6	27	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323597--323654	7	8.4	7	90	3	64	10	6	46	36	1.65
323604--323642	20	1.9	21	89	5	62	7	10	46	35	1.67
323604--323660	27	2.1	27	83	6	71	8	10	47	33	1.69
323604--323908	7	44.0	7	92	1	292	1	20	54	22	1.55
327309--327348	21	1.9	21	89	0	62	10	25	40	25	1.86
333483--333762	7	40.6	7	94	2	496	0	13	55	30	1.44
336642--337539	10	90.9	10	74	11	509	22	6	28	42	1.77
337440--337509	31	2.3	31	76	16	56	24	8	30	37	1.85
337259--337539	153	1.8	155	83	4	381	22	5	29	43	1.76
339862--339899	7	5.6	7	93	6	69	0	0	57	42	0.98

Tables:   1

The End!