Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008989.1 Hibiscus syriacus cultivar Beakdansim tig00112354_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 534435
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
File 1 of 2
Found at i:184 original size:21 final size:22
Alignment explanation
Indices: 150--192 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
140 ATTTCCAATC
*
150 ATATTCTATAAATTATATTAAT
1 ATATTCTATAAATTAAATTAAT
172 ATATTCT-TAAATTAAATTAAT
1 ATATTCTATAAATTAAATTAAT
193 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (22 bp):
ATATTCTATAAATTAAATTAAT
Found at i:2385 original size:24 final size:25
Alignment explanation
Indices: 2322--2385 Score: 62
Period size: 24 Copynumber: 2.6 Consensus size: 25
2312 AATTTATTCT
* *
2322 TAAAT-TAAATTATTTATATAATTTA
1 TAAATATAAATTA-TAATAAAATTTA
*
2347 TAAATAT-AATAATAATAAAATTTA
1 TAAATATAAATTATAATAAAATTTA
*
2371 -AATTATAAATTATAA
1 TAAATATAAATTATAA
2386 AATATCATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
23 5 0.16
24 17 0.53
25 9 0.28
26 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAAATATAAATTATAATAAAATTTA
Found at i:2560 original size:26 final size:26
Alignment explanation
Indices: 2530--2584 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
2520 TTCAAACTTG
* *
2530 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTCGGATAAT
* *
2556 GATTATCATTGTTTGATTCGGATTAT
1 GATTATCAATGTTTGATTCGGATAAT
2582 GAT
1 GAT
2585 ATGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (26 bp):
GATTATCAATGTTTGATTCGGATAAT
Found at i:2592 original size:26 final size:26
Alignment explanation
Indices: 2530--2593 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
2520 TTCAAACTTG
*
2530 GATTATTAA-TGTTTGATTTGGATAAT
1 GATTA-TAATTGTTTGATTCGGATAAT
* *
2556 GATTATCATTGTTTGATTCGGATTAT
1 GATTATAATTGTTTGATTCGGATAAT
2582 GA-TATGAATTGT
1 GATTAT-AATTGT
2594 GACTTTGTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 5 0.16
26 27 0.84
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.48
Consensus pattern (26 bp):
GATTATAATTGTTTGATTCGGATAAT
Found at i:5176 original size:18 final size:17
Alignment explanation
Indices: 5153--5186 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
5143 AATTAACGTT
5153 TATTCTAGATGAAAAAAA
1 TATTCTAGAT-AAAAAAA
*
5171 TATTCTATATAAAAAA
1 TATTCTAGATAAAAAA
5187 GCATATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (17 bp):
TATTCTAGATAAAAAAA
Found at i:5937 original size:23 final size:24
Alignment explanation
Indices: 5906--5950 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
5896 AAAATTGAAA
*
5906 ATTATTATTATTT-ATT-TATTTAG
1 ATTAATATT-TTTCATTGTATTTAG
5929 ATTAATATTTTTCATTGTATTT
1 ATTAATATTTTTCATTGTATTT
5951 TTGGTTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 3 0.16
23 11 0.58
24 5 0.26
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (24 bp):
ATTAATATTTTTCATTGTATTTAG
Found at i:6172 original size:23 final size:23
Alignment explanation
Indices: 6120--6173 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
6110 TAAATGTTCA
*
6120 ATTCATTTAACATTCACGAACAT
1 ATTCGTTTAACATTCACGAACAT
* ** *
6143 ATGCGTTTAACATTCGTGAATAT
1 ATTCGTTTAACATTCACGAACAT
6166 ATTCGTTT
1 ATTCGTTT
6174 GGCATTTGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (23 bp):
ATTCGTTTAACATTCACGAACAT
Found at i:6286 original size:21 final size:23
Alignment explanation
Indices: 6245--6286 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
6235 CCACTAATCC
6245 TTAAGCTCTAAAAGTTTCACAGT
1 TTAAGCTCTAAAAGTTTCACAGT
*
6268 TTAAGCT-TCAAAG-TTCACA
1 TTAAGCTCTAAAAGTTTCACA
6287 TTGTGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (23 bp):
TTAAGCTCTAAAAGTTTCACAGT
Found at i:9123 original size:21 final size:21
Alignment explanation
Indices: 9081--9123 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
9071 TTTCTGGGCT
* *
9081 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
9102 AGGGGAATCGATCCCCCCTCA
1 AGGGGAATCGATACCCACTCA
9123 A
1 A
9124 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:10308 original size:30 final size:30
Alignment explanation
Indices: 10247--10335 Score: 124
Period size: 30 Copynumber: 2.9 Consensus size: 30
10237 CTAAGGAACA
* * ***
10247 TATGGATAGTTTACCTAGGTTCTTCGGGACC
1 TATGGATAG-TTACCGAGGATCTTTATGACC
10278 TATGGATAGTTACCGAGGATCTTTATGACC
1 TATGGATAGTTACCGAGGATCTTTATGACC
10308 TATGGATAGTTACCGAGGATCTTTATGA
1 TATGGATAGTTACCGAGGATCTTTATGA
10336 AGAATGCCCT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 44 0.83
31 9 0.17
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (30 bp):
TATGGATAGTTACCGAGGATCTTTATGACC
Found at i:16373 original size:211 final size:211
Alignment explanation
Indices: 16009--16428 Score: 822
Period size: 211 Copynumber: 2.0 Consensus size: 211
15999 GAATCACTGG
16009 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
1 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
16074 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
66 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
16139 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
131 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
16204 TGAATTTCTTTGGAGT
196 TGAATTTCTTTGGAGT
16220 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
1 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
*
16285 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATTGCTCATTCCCTTGTTGATAAT
66 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
16350 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
131 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
*
16415 TGAATTTTTTTGGA
196 TGAATTTCTTTGGA
16429 TTAGTTATGC
Statistics
Matches: 207, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
211 207 1.00
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (211 bp):
AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
TGAATTTCTTTGGAGT
Found at i:21552 original size:21 final size:23
Alignment explanation
Indices: 21518--21561 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
21508 ATTTCCAATC
*
21518 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
21541 ATATTCT-T-AAATTAAATTAAT
1 ATATTCTATAAAATTAAATTAAT
21562 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:21748 original size:14 final size:14
Alignment explanation
Indices: 21729--21757 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
21719 TATTAATATT
21729 TAAACTATAAATTA
1 TAAACTATAAATTA
21743 TAAACTATAAATTA
1 TAAACTATAAATTA
21757 T
1 T
21758 TATATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAACTATAAATTA
Found at i:23762 original size:34 final size:33
Alignment explanation
Indices: 23702--23777 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
23692 AAATTATTTA
* *
23702 TATAATTTATAAATATAATAATAATAT-TTAAAT
1 TATAAATTATAAATATAATAAGAATATATT-AAT
*
23735 TATAAATTATAAAATATCATAAGAATATATTAAT
1 TATAAATTAT-AAATATAATAAGAATATATTAAT
23769 T-TAAATTAT
1 TATAAATTAT
23778 CATTGTTTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 17 0.45
34 19 0.50
35 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (33 bp):
TATAAATTATAAATATAATAAGAATATATTAAT
Found at i:23802 original size:26 final size:26
Alignment explanation
Indices: 23773--23823 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23763 ATTAATTTAA
23773 ATTATCATTGTTTGATTTAGATAATG
1 ATTATCATTGTTTGATTTAGATAATG
*
23799 ATTATCATTGTTTGATTTGGATAAT
1 ATTATCATTGTTTGATTTAGATAAT
23824 TTATTCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.51
Consensus pattern (26 bp):
ATTATCATTGTTTGATTTAGATAATG
Found at i:23888 original size:26 final size:26
Alignment explanation
Indices: 23858--23912 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
23848 TTCAAACTTG
* *
23858 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTCGGATAAT
* *
23884 GATTATCATTGTTTGATTCGGATTAT
1 GATTATCAATGTTTGATTCGGATAAT
23910 GAT
1 GAT
23913 GTGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (26 bp):
GATTATCAATGTTTGATTCGGATAAT
Found at i:24359 original size:3 final size:3
Alignment explanation
Indices: 24353--24380 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
24343 GCTTGTTTTA
24353 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
24381 TTTTGTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:31696 original size:20 final size:21
Alignment explanation
Indices: 31671--31739 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
31661 ATATTTTTTT
31671 TAAATTAAATTAAAATA-TCA
1 TAAATTAAATTAAAATATTCA
** *
31691 TAAATTAAATTAATTTATTCT
1 TAAATTAAATTAAAATATTCA
* *
31712 TAAATTAAATTAAATTATTTA
1 TAAATTAAATTAAAATATTCA
31733 TATAATT
1 TA-AATT
31740 TATAAATATA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 15 0.37
21 22 0.54
22 4 0.10
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAATTAAATTAAAATATTCA
Found at i:31717 original size:21 final size:21
Alignment explanation
Indices: 31670--31730 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
31660 GATATTTTTT
*
31670 TTAAATTAAATTAAAATA-TC
1 TTAAATTAAATTAAATTATTC
* *
31690 ATAAATTAAATTAATTTATTC
1 TTAAATTAAATTAAATTATTC
31711 TTAAATTAAATTAAATTATT
1 TTAAATTAAATTAAATTATT
31731 TATATAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 15 0.43
21 20 0.57
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (21 bp):
TTAAATTAAATTAAATTATTC
Found at i:31789 original size:30 final size:29
Alignment explanation
Indices: 31733--31793 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 29
31723 AAATTATTTA
* * *
31733 TATAATTTATAAATATAATGATAATATAT
1 TATAAATTATAAATATAATAAGAATATAT
*
31762 TATAAATTATAAAATATCATAAGAATATAT
1 TATAAATTAT-AAATATAATAAGAATATAT
31792 TA
1 TA
31794 ATTTAAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (29 bp):
TATAAATTATAAATATAATAAGAATATAT
Found at i:31820 original size:26 final size:26
Alignment explanation
Indices: 31791--31885 Score: 92
Period size: 25 Copynumber: 3.8 Consensus size: 26
31781 TAAGAATATA
*
31791 TTAATTTAAATTATATTAATATATTC
1 TTAAATTAAATTATATTAATATATTC
31817 TTAAATTAAATTAT-TCTAATAT-TAT-
1 TTAAATTAAATTATAT-TAATATAT-TC
* ** *
31842 TTAAAATATTTTATA-TAATTTATTC
1 TTAAATTAAATTATATTAATATATTC
31867 TTAAATTAAATTA-ATTAAT
1 TTAAATTAAATTATATTAAT
31886 TTATATAATT
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
24 7 0.13
25 28 0.51
26 20 0.36
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (26 bp):
TTAAATTAAATTATATTAATATATTC
Found at i:31866 original size:34 final size:34
Alignment explanation
Indices: 31796--31898 Score: 93
Period size: 34 Copynumber: 2.9 Consensus size: 34
31786 ATATATTAAT
* * *
31796 TTAAATTATATTAATATATTCTTAAATTAAATTATTC
1 TTAAATTAT-TTAAAATATT-TTATA-TAATTTATTC
31833 -TAATATTATTTAAAATATTTTATATAATTTATTC
1 TTAA-ATTATTTAAAATATTTTATATAATTTATTC
* * *
31867 TTAAATTAAATT-AATTAATTTATATAATTTAT
1 TTAAATT-ATTTAAAATATTTTATATAATTTAT
31899 AAATATAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
34 30 0.53
35 10 0.18
36 12 0.21
37 5 0.09
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (34 bp):
TTAAATTATTTAAAATATTTTATATAATTTATTC
Found at i:32161 original size:13 final size:14
Alignment explanation
Indices: 32138--32166 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32128 ATAATAATAT
32138 TAATATTTAAATTA
1 TAATATTTAAATTA
32152 TAAT-TTTAAATTA
1 TAATATTTAAATTA
32165 TA
1 TA
32167 TTAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATTTAAATTA
Found at i:32226 original size:49 final size:47
Alignment explanation
Indices: 32162--32268 Score: 133
Period size: 49 Copynumber: 2.2 Consensus size: 47
32152 TAATTTTAAA
*
32162 TTATATTAATATATTCTTAAATTAAATTGATTTAAATTATTATAATATTT
1 TTATA-TAATATATTCTTAAATTAAATT-AATTAAATTA-TATAATATTT
* * *
32212 TTATATAATTTATTCTTAAATTGAATTAATTAATTTATATAATATTT
1 TTATATAATATATTCTTAAATTAAATTAATTAAATTATATAATATTT
**
32259 AAATATAATA
1 TTATATAATA
32269 AGGATTAAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
47 17 0.34
48 8 0.16
49 20 0.40
50 5 0.10
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (47 bp):
TTATATAATATATTCTTAAATTAAATTAATTAAATTATATAATATTT
Found at i:32503 original size:361 final size:359
Alignment explanation
Indices: 31794--32575 Score: 1132
Period size: 361 Copynumber: 2.2 Consensus size: 359
31784 GAATATATTA
*
31794 ATTTAAATTATATTAATATATTCTTAAATTAAATTATTCTAATATTATT-TAAAATATTTTATAT
1 ATTTAAATTATATTAATATATTCTTAAATTAAATTATT-TAA-ATTATTATAATAT-TTTTATAT
31858 AATTTATTCTTAAATTAAATTAATTAATTTATATAATTTATAAATATAATAAGGATTAAGATACA
63 AATTTATTCTTAAATTAAATTAATTAATTTATATAATTTATAAATATAATAAGGATTAAGATACA
* * * * *
31923 CTTATATTGTGTAAAACTCTTTTAGGTTTGCATCTTTTTAGTCTCATTGGATTGAGAGAAATCAA
128 CTTACACTATGTAAAACTCTTTTAGGTTTACATCTTTTTAGGCTCATTGGATTGAGAGAAATCAA
* * *
31988 AGGTTGAAATTAATTCGTTTTTTAGTGAATATCTGTTCATTTTCCATGGTTAATCTTAGTCTTTA
193 AGATTGAAATTAATTCGTTTTTTAGTGAATATCTGTTCATTTTCCACGATTAATCTTAGTCTTTA
* * * * *
32053 ATTTCTTTCATTCAATGGTCCTAAAATGGTGTAAAACTAAAGAGTTTTATACACTATAATTGGAT
258 ATTTCTCTCATCCAATGATCCTAAAATGGTATAAAACTAAAGAGTTTTACACACTATAATTGGAT
*
32118 CTTGCCCCATATAATAATATTAATATTTAAATTATA-
323 CCTGCCCCATATAATAATATTAATATTTAAATTATAG
32154 ATTTTAAATTATATTAATATATTCTTAAATTAAATTGATTTAAATTATTATAATATTTTTATATA
1 A-TTTAAATTATATTAATATATTCTTAAATTAAATT-ATTTAAATTATTATAATATTTTTATATA
*
32219 ATTTATTCTTAAATTGAATTAATTAATTTATATAATATT-TAAATATAATAAGGATTAAGAT-CT
64 ATTTATTCTTAAATTAAATTAATTAATTTATATAAT-TTATAAATATAATAAGGATTAAGATAC-
* * *
32282 ATTTACACTATGTAAAACTCTTTTAGTTTTACA-CATTTTTAGAGC-GATTGGATTGAGAGAAAT
127 ACTTACACTATGTAAAACTCTTTTAGGTTTACATC-TTTTTAG-GCTCATTGGATTGAGAGAAAT
* *
32345 CAAAGATTGAGATTAATTCGTTTTTTTAGTGAATATCTTTTCATTTTCCACGATTAAT-TTCAGT
190 CAAAGATTGAAATTAATTCG-TTTTTTAGTGAATATCTGTTCATTTTCCACGATTAATCTT-AGT
* * *
32409 TTTTAATTTCTCTCATCCAATGATCTTAAAATGGTAT-AAACTAAAAGAGTTTTACACATTATAA
253 CTTTAATTTCTCTCATCCAATGATCCTAAAATGGTATAAAACT-AAAGAGTTTTACACACTATAA
*
32473 TTGGATCCTGCCCTATATAATAATATTAATATTTAAATTATAG
317 TTGGATCCTGCCCCATATAATAATATTAATATTTAAATTATAG
* *
32516 ATTTAAATTATATTAATATGTTCTTAACA-TAAATAATTTAAATTATTATAATATTATTTA
1 ATTTAAATTATATTAATATATTCTTAA-ATTAAATTATTTAAATTATTATAATATT-TTTA
32576 AGTATTTTTA
Statistics
Matches: 382, Mismatches: 27, Indels: 25
0.88 0.06 0.06
Matches are distributed among these distances:
359 2 0.01
360 169 0.44
361 206 0.54
362 5 0.01
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (359 bp):
ATTTAAATTATATTAATATATTCTTAAATTAAATTATTTAAATTATTATAATATTTTTATATAAT
TTATTCTTAAATTAAATTAATTAATTTATATAATTTATAAATATAATAAGGATTAAGATACACTT
ACACTATGTAAAACTCTTTTAGGTTTACATCTTTTTAGGCTCATTGGATTGAGAGAAATCAAAGA
TTGAAATTAATTCGTTTTTTAGTGAATATCTGTTCATTTTCCACGATTAATCTTAGTCTTTAATT
TCTCTCATCCAATGATCCTAAAATGGTATAAAACTAAAGAGTTTTACACACTATAATTGGATCCT
GCCCCATATAATAATATTAATATTTAAATTATAG
Found at i:32521 original size:13 final size:13
Alignment explanation
Indices: 32503--32527 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32493 TAATATTAAT
32503 ATTTAAATTATAG
1 ATTTAAATTATAG
32516 ATTTAAATTATA
1 ATTTAAATTATA
32528 TTAATATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
ATTTAAATTATAG
Found at i:32614 original size:21 final size:21
Alignment explanation
Indices: 32588--32630 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
32578 TATTTTTATA
*
32588 TAATTTATTTTTAAATTAAAT
1 TAATTTATTCTTAAATTAAAT
32609 TAATTTATTCTTAAATTAAAT
1 TAATTTATTCTTAAATTAAAT
32630 T
1 T
32631 GTTTATATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATTTATTCTTAAATTAAAT
Found at i:35106 original size:21 final size:23
Alignment explanation
Indices: 35072--35115 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
35062 ATTTCCAATC
*
35072 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
35095 ATATTCT-T-AAATTAAATTAAT
1 ATATTCTATAAAATTAAATTAAT
35116 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:37270 original size:13 final size:13
Alignment explanation
Indices: 37240--37304 Score: 59
Period size: 13 Copynumber: 5.3 Consensus size: 13
37230 AATTTATTCT
37240 TAAAT-TAAATTA
1 TAAATATAAATTA
* *
37252 TGAATATAATTTA
1 TAAATATAAATTA
*
37265 TAAATAT-AATAA
1 TAAATATAAATTA
37277 T-AATA-AAATT-
1 TAAATATAAATTA
37287 TAAATTATAAATTA
1 TAAA-TATAAATTA
37301 TAAA
1 TAAA
37305 ATATCATAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
10 1 0.02
11 9 0.22
12 10 0.24
13 17 0.41
14 4 0.10
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (13 bp):
TAAATATAAATTA
Found at i:37397 original size:26 final size:26
Alignment explanation
Indices: 37366--37416 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
37356 ATTAATTTAA
37366 ATTATCATTGTTTGATTTAGATAATG
1 ATTATCATTGTTTGATTTAGATAATG
*
37392 ATTATCATTGTTTGATTTGGATAAT
1 ATTATCATTGTTTGATTTAGATAAT
37417 TTATTCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.51
Consensus pattern (26 bp):
ATTATCATTGTTTGATTTAGATAATG
Found at i:37481 original size:26 final size:26
Alignment explanation
Indices: 37451--37505 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
37441 TTCAAACTTG
* *
37451 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTCGGATAAT
* *
37477 GATTATCATTGTTTGATTCGGATTAT
1 GATTATCAATGTTTGATTCGGATAAT
37503 GAT
1 GAT
37506 ATGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (26 bp):
GATTATCAATGTTTGATTCGGATAAT
Found at i:37513 original size:26 final size:26
Alignment explanation
Indices: 37451--37514 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
37441 TTCAAACTTG
*
37451 GATTATTAA-TGTTTGATTTGGATAAT
1 GATTA-TAATTGTTTGATTCGGATAAT
* *
37477 GATTATCATTGTTTGATTCGGATTAT
1 GATTATAATTGTTTGATTCGGATAAT
37503 GA-TATGAATTGT
1 GATTAT-AATTGT
37515 GACTTTGTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 5 0.16
26 27 0.84
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.48
Consensus pattern (26 bp):
GATTATAATTGTTTGATTCGGATAAT
Found at i:37951 original size:3 final size:3
Alignment explanation
Indices: 37945--37969 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
37935 GCTTGTTTTA
37945 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
37970 TGTTTGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:48469 original size:14 final size:14
Alignment explanation
Indices: 48461--48508 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
48451 GCTCGTTCGA
48461 ATGGCCTCGGTCGG
1 ATGGCCTCGGTCGG
*
48475 AT-GAC-C--TCGG
1 ATGGCCTCGGTCGG
48485 ATGGCCTCGGTCGG
1 ATGGCCTCGGTCGG
48499 ATGGCCTCGG
1 ATGGCCTCGG
48509 ATGCCCAGCG
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 6 0.21
11 2 0.07
12 2 0.07
13 2 0.07
14 16 0.57
ACGTcount: A:0.10, C:0.29, G:0.40, T:0.21
Consensus pattern (14 bp):
ATGGCCTCGGTCGG
Found at i:48493 original size:24 final size:24
Alignment explanation
Indices: 48461--48511 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
48451 GCTCGTTCGA
48461 ATGGCCTCGGTCGGATGACCTCGG
1 ATGGCCTCGGTCGGATGACCTCGG
*
48485 ATGGCCTCGGTCGGATGGCCTCGG
1 ATGGCCTCGGTCGGATGACCTCGG
48509 ATG
1 ATG
48512 CCCAGCGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.12, C:0.27, G:0.39, T:0.22
Consensus pattern (24 bp):
ATGGCCTCGGTCGGATGACCTCGG
Found at i:48588 original size:29 final size:29
Alignment explanation
Indices: 48551--48608 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
48541 GCAATCTCTT
*
48551 GTAGCTCGCCGGGAAGACATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGGCGACCTA
* *
48580 GTAGGTCGCCCGGAAGGCATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGGCGACCTA
48609 CGGCCAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.36, T:0.14
Consensus pattern (29 bp):
GTAGCTCGCCCGGAAGACATGGCGACCTA
Found at i:49526 original size:104 final size:104
Alignment explanation
Indices: 49332--49555 Score: 378
Period size: 104 Copynumber: 2.1 Consensus size: 104
49322 TCGTCATACC
*
49332 TATAATATCA-TGATTTGGGGATTCTTTTTGTCGTTGAAACTCGACACTGCTAATCGATTTTATG
1 TATAATA-CATTGA-TTGGGGATTCTTTTTGTAGTTGAAACTCGACACTGCTAATCGATTTTATG
49396 AAGATATGAAGACTAGAGGCATTGCACCTGATGCTGTGACG
64 AAGATATGAAGACTAGAGGCATTGCACCTGATGCTGTGACG
* *
49437 TATAATACATTGATTGGGGATTCTTTTTGTAGTTGAGACTCGACACTGCTAATCGGTTTTATGAA
1 TATAATACATTGATTGGGGATTCTTTTTGTAGTTGAAACTCGACACTGCTAATCGATTTTATGAA
* *
49502 GATATGAAGACTAGGGGCATTGCACCTGATGCTGTGATG
66 GATATGAAGACTAGAGGCATTGCACCTGATGCTGTGACG
49541 TATAATACATTGATT
1 TATAATACATTGATT
49556 AATGGATATA
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
104 103 0.91
105 10 0.09
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (104 bp):
TATAATACATTGATTGGGGATTCTTTTTGTAGTTGAAACTCGACACTGCTAATCGATTTTATGAA
GATATGAAGACTAGAGGCATTGCACCTGATGCTGTGACG
Found at i:51595 original size:15 final size:15
Alignment explanation
Indices: 51577--51608 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
51567 TATTTTTATT
51577 TTTTATATTCGAATA
1 TTTTATATTCGAATA
*
51592 TTTTATATTCTAATA
1 TTTTATATTCGAATA
51607 TT
1 TT
51609 CATATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.59
Consensus pattern (15 bp):
TTTTATATTCGAATA
Found at i:64665 original size:18 final size:17
Alignment explanation
Indices: 64642--64675 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
64632 AATTAACGTT
64642 TATTCTAGATGAAAAAAA
1 TATTCTAGAT-AAAAAAA
*
64660 TATTCTATATAAAAAA
1 TATTCTAGATAAAAAA
64676 GCATATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (17 bp):
TATTCTAGATAAAAAAA
Found at i:65136 original size:60 final size:60
Alignment explanation
Indices: 65027--65139 Score: 145
Period size: 60 Copynumber: 1.9 Consensus size: 60
65017 TCGAATTATT
* ** * * *
65027 ATTTTATAATTTTTAATAGTCGATGGACGCAACAAAGCAACGTCTTACAATCGAAAGATA
1 ATTTTATAACTTTTAATAGTCGAAAGACGCAACAAAACAACATCCTACAATCGAAAGATA
* * *
65087 ATTTTATAACTTTTAATAGTCGAAATACTCAATAAAACAACATCCTACAATCG
1 ATTTTATAACTTTTAATAGTCGAAAGACGCAACAAAACAACATCCTACAATCG
65140 GTATACCATC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 44 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.31
Consensus pattern (60 bp):
ATTTTATAACTTTTAATAGTCGAAAGACGCAACAAAACAACATCCTACAATCGAAAGATA
Found at i:65559 original size:8 final size:8
Alignment explanation
Indices: 65550--65581 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
65540 AAAATTAAAT
*
65550 TAAAAAAT
1 TAAAAAAA
65558 TAAAAAAA
1 TAAAAAAA
65566 TAAAAAAA
1 TAAAAAAA
65574 TAAAAAAA
1 TAAAAAAA
65582 ATATATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:65563 original size:9 final size:9
Alignment explanation
Indices: 65546--65583 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
65536 TAAAAAAATT
65546 AAATT-AAA
1 AAATTAAAA
65554 AAATTAAAA
1 AAATTAAAA
65563 AAA-TAAAA
1 AAATTAAAA
*
65571 AAATAAAAA
1 AAATTAAAA
65580 AAAT
1 AAAT
65584 ATATATGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
8 13 0.48
9 14 0.52
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (9 bp):
AAATTAAAA
Found at i:65571 original size:17 final size:17
Alignment explanation
Indices: 65546--65584 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
65536 TAAAAAAATT
* *
65546 AAATTAAAAAATTAAAA
1 AAATAAAAAAATAAAAA
65563 AAATAAAAAAATAAAAA
1 AAATAAAAAAATAAAAA
65580 AAATA
1 AAATA
65585 TATATGAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (17 bp):
AAATAAAAAAATAAAAA
Found at i:65578 original size:22 final size:22
Alignment explanation
Indices: 65535--65579 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
65525 CATATATGAT
**
65535 TTAAAAAAATTAAATTAAAAAA
1 TTAAAAAAATTAAAAAAAAAAA
*
65557 TTAAAAAAATAAAAAAATAAAAA
1 TTAAAAAAATTAAAAAA-AAAAA
65580 AAATATATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (22 bp):
TTAAAAAAATTAAAAAAAAAAA
Found at i:68970 original size:12 final size:12
Alignment explanation
Indices: 68953--68984 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
68943 CAAGGATAGA
68953 AGCTCTCGGTCG
1 AGCTCTCGGTCG
68965 AGCTCTCGGTCG
1 AGCTCTCGGTCG
68977 AGCTCTCG
1 AGCTCTCG
68985 AAATGGGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.34, G:0.31, T:0.25
Consensus pattern (12 bp):
AGCTCTCGGTCG
Found at i:74144 original size:21 final size:22
Alignment explanation
Indices: 74100--74145 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
74090 TTTTATGTGA
* *
74100 ATTATTTTTTATGAGTTTTAAT
1 ATTATTTTTGATAAGTTTTAAT
74122 ATTATTTTTGATAAGTTTT-AT
1 ATTATTTTTGATAAGTTTTAAT
74143 ATT
1 ATT
74146 TTTAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (22 bp):
ATTATTTTTGATAAGTTTTAAT
Found at i:80001 original size:30 final size:30
Alignment explanation
Indices: 79965--80026 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
79955 TAAATAGGAT
*
79965 GGGAAAAACCGTTTATGCTAAACGGGGACG
1 GGGAAAAACCGTTTATGCTAAACGGAGACG
* * *
79995 GGGAAAAACTGTTTATGTTAAATGGAGACG
1 GGGAAAAACCGTTTATGCTAAACGGAGACG
80025 GG
1 GG
80027 TTTAGTAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.34, C:0.11, G:0.34, T:0.21
Consensus pattern (30 bp):
GGGAAAAACCGTTTATGCTAAACGGAGACG
Found at i:80101 original size:2 final size:2
Alignment explanation
Indices: 80094--80137 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
80084 ATAATTATTT
80094 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80135 TA T
1 TA T
80138 TAATAAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80141 original size:6 final size:7
Alignment explanation
Indices: 80095--80142 Score: 53
Period size: 8 Copynumber: 6.4 Consensus size: 7
80085 TAATTATTTT
80095 ATATATA
1 ATATATA
80102 TATATATA
1 -ATATATA
80110 TATATATA
1 -ATATATA
80118 TATATATA
1 -ATATATA
80126 TATATATA
1 -ATATATA
80134 ATAT-TA
1 ATATATA
80140 ATA
1 ATA
80143 AATTTAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 5 0.12
7 4 0.10
8 31 0.77
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATATATA
Found at i:80333 original size:19 final size:19
Alignment explanation
Indices: 80309--80345 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
80299 AATTCCCGTG
*
80309 ATTTTTTAAGCGGGGACGA
1 ATTTTTTAAACGGGGACGA
80328 ATTTTTTAAACGGGGACG
1 ATTTTTTAAACGGGGACG
80346 GGGACGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (19 bp):
ATTTTTTAAACGGGGACGA
Found at i:81583 original size:69 final size:69
Alignment explanation
Indices: 81504--81660 Score: 242
Period size: 69 Copynumber: 2.3 Consensus size: 69
81494 GATGTTGAAC
* *
81504 GTAATGGAGATGATAATTGAAGTGGAGAAGTGGATGGTAGTGATTGAAGTGAAGTAGATAGTGGT
1 GTAATGGAGATGATAATTGAAGTGGAGAAGTGGATGATAGTGATTGAAGTGAAGCAGATAGTGGT
81569 AGAT
66 AGAT
* * * *
81573 GTAATGGAGATGATAATTGAAGTGGAGAAGTGGATGATGGTGCTTGAAGTGAAGCATATGGTGGT
1 GTAATGGAGATGATAATTGAAGTGGAGAAGTGGATGATAGTGATTGAAGTGAAGCAGATAGTGGT
*
81638 GGAT
66 AGAT
*
81642 ATAATGGAGATGATAATTG
1 GTAATGGAGATGATAATTG
81661 TTGAATCAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 80 1.00
ACGTcount: A:0.34, C:0.01, G:0.37, T:0.28
Consensus pattern (69 bp):
GTAATGGAGATGATAATTGAAGTGGAGAAGTGGATGATAGTGATTGAAGTGAAGCAGATAGTGGT
AGAT
Found at i:81967 original size:29 final size:29
Alignment explanation
Indices: 81925--81983 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
81915 ATTTTCACCT
81925 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
81954 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
81983 A
1 A
81984 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:86650 original size:29 final size:29
Alignment explanation
Indices: 86608--86666 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
86598 ATTTTCACCT
86608 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
86637 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
86666 A
1 A
86667 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:86817 original size:69 final size:69
Alignment explanation
Indices: 86711--87070 Score: 522
Period size: 69 Copynumber: 5.2 Consensus size: 69
86701 ATTTTCAACA
* * *
86711 ATAATTGAAGTGGAGAAGTGGATGGTGGTGATCGAAGTGAATTAGATGGTGGTGGATGTAATGGA
1 ATAATTGAAGTGGAGAAGTGGATGATGGTGATTGAAGTGAAGTAGATGGTGGTGGATGTAATGGA
86776 GATG
66 GATG
* * ** * * *
86780 ATAACTGAAATGGAGAAGTGGATGATAATGGTTGAAGTGAAGTAGATAGTGGTAGATGTAATGGA
1 ATAATTGAAGTGGAGAAGTGGATGATGGTGATTGAAGTGAAGTAGATGGTGGTGGATGTAATGGA
86845 GATG
66 GATG
* * * * *
86849 ATAATTGAAGTGGAGAAGTGGATGATGGTGCTTGAAGTGAAGCATATGGTGGTGAATATAATGGA
1 ATAATTGAAGTGGAGAAGTGGATGATGGTGATTGAAGTGAAGTAGATGGTGGTGGATGTAATGGA
86914 GATG
66 GATG
* *
86918 ATAATTGAAGTGGAGAAGTGGATGGTGGTGATTGAAGTGAATTAGATGGTGGTGGATGTAATGGA
1 ATAATTGAAGTGGAGAAGTGGATGATGGTGATTGAAGTGAAGTAGATGGTGGTGGATGTAATGGA
86983 GATG
66 GATG
* * ** *
86987 ATAACTGAAATGGAGAAGTGGATGATAATGGTTGAAGTGAAGTAGATGGTGGTGGATGTAATGGA
1 ATAATTGAAGTGGAGAAGTGGATGATGGTGATTGAAGTGAAGTAGATGGTGGTGGATGTAATGGA
87052 GATG
66 GATG
87056 ATAATTGAAGTGGAG
1 ATAATTGAAGTGGAG
87071 GAGATGCCAA
Statistics
Matches: 254, Mismatches: 37, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 254 1.00
ACGTcount: A:0.34, C:0.01, G:0.38, T:0.27
Consensus pattern (69 bp):
ATAATTGAAGTGGAGAAGTGGATGATGGTGATTGAAGTGAAGTAGATGGTGGTGGATGTAATGGA
GATG
Found at i:90183 original size:2 final size:2
Alignment explanation
Indices: 90176--90204 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
90166 TTATTTGCTT
90176 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
90205 AGAATTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:91758 original size:23 final size:23
Alignment explanation
Indices: 91732--91779 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
91722 ATAAAGTACA
*
91732 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
** *
91755 ATAATGTAATAGGTAGTGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
91778 AT
1 AT
91780 TTACCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:92267 original size:23 final size:23
Alignment explanation
Indices: 92195--92267 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
92185 ACACTTTACA
* *
92195 ATATAACCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* * *
92218 AAATAAACGATACATATTACATT
1 ATATAAACGCTACCTATTACATT
* *
92241 ATATAAGCGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
92264 ATAT
1 ATAT
92268 TTTTACCTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.42, C:0.21, G:0.04, T:0.33
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:92431 original size:430 final size:429
Alignment explanation
Indices: 91846--92899 Score: 2009
Period size: 430 Copynumber: 2.5 Consensus size: 429
91836 TATTACATTA
91846 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
91911 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
91976 TTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
131 TTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
92041 TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAAAATCT
196 TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAAAATCT
92106 TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAATTT
261 TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAATTT
92171 TATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTAAATAAACGATACATATT
326 TATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTAAATAAACGATACATATT
92236 ACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 ACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
92275 TATTATATTTAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
*
92340 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTT
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
92405 ATTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
130 ATTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
*
92470 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
195 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAAAATC
* *
92535 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAATTATGGACACTT
260 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAATT
* *
92600 TTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
325 TTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTAAATAAACGATACATAT
92665 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
92705 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCAATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
92770 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
92835 TTTGCACAAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
131 TTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
92900 CAACATTAAC
Statistics
Matches: 612, Mismatches: 12, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
429 192 0.31
430 420 0.69
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.42
Consensus pattern (429 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
TTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAAAATCT
TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAATTT
TATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTAAATAAACGATACATATT
ACATTATATAAGCGCTACCTATTACATCATATTTTTACC
Found at i:92661 original size:23 final size:23
Alignment explanation
Indices: 92635--92697 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
92625 ATATAACCAC
92635 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
92658 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
92681 TACCTATTACATCATAT
1 TACCTATTACATTATAT
92698 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:93171 original size:39 final size:39
Alignment explanation
Indices: 93117--93202 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
93107 CAAGTTGTAG
*
93117 ATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* *
93156 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
93195 ATTTTGAT
1 ATTTTGAT
93203 GAGCATCGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:93482 original size:18 final size:18
Alignment explanation
Indices: 93459--93495 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
93449 CGAAATATAT
93459 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
93477 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
93495 A
1 A
93496 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:93950 original size:23 final size:23
Alignment explanation
Indices: 93918--94066 Score: 219
Period size: 23 Copynumber: 6.5 Consensus size: 23
93908 GATAGATACT
*
93918 TTACAATATATAAACGATACCTA
1 TTACATTATATAAACGATACCTA
* *
93941 TTACATTATATAAGCGCTACCTA
1 TTACATTATATAAACGATACCTA
93964 TTACATTATATAAACGATACCTA
1 TTACATTATATAAACGATACCTA
*
93987 TTACATTATATAAGC-ACTACCTA
1 TTACATTATATAAACGA-TACCTA
94010 TTACATTATATAAACGATACCTA
1 TTACATTATATAAACGATACCTA
* *
94033 TTACATTATATAAGCGCTACCTA
1 TTACATTATATAAACGATACCTA
*
94056 TTACATCATAT
1 TTACATTATAT
94067 GTTTACCTAT
Statistics
Matches: 114, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
22 1 0.01
23 112 0.98
24 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.35
Consensus pattern (23 bp):
TTACATTATATAAACGATACCTA
Found at i:93968 original size:46 final size:46
Alignment explanation
Indices: 93918--94066 Score: 271
Period size: 46 Copynumber: 3.2 Consensus size: 46
93908 GATAGATACT
*
93918 TTACAATATATAAACGATACCTATTACATTATATAAGCGCTACCTA
1 TTACATTATATAAACGATACCTATTACATTATATAAGCGCTACCTA
*
93964 TTACATTATATAAACGATACCTATTACATTATATAAGCACTACCTA
1 TTACATTATATAAACGATACCTATTACATTATATAAGCGCTACCTA
94010 TTACATTATATAAACGATACCTATTACATTATATAAGCGCTACCTA
1 TTACATTATATAAACGATACCTATTACATTATATAAGCGCTACCTA
*
94056 TTACATCATAT
1 TTACATTATAT
94067 GTTTACCTAT
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 99 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.35
Consensus pattern (46 bp):
TTACATTATATAAACGATACCTATTACATTATATAAGCGCTACCTA
Found at i:94409 original size:25 final size:25
Alignment explanation
Indices: 94352--94417 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
94342 CACTCAAAAG
*
94352 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
94377 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
94402 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
94418 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:95972 original size:183 final size:183
Alignment explanation
Indices: 95447--95939 Score: 907
Period size: 183 Copynumber: 2.7 Consensus size: 183
95437 TTAAAATTAC
*
95447 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
*
95512 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
95577 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
* * *
95630 CGACAGTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATAGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
95695 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
95760 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
*
95813 CGACACTTTTTAACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTTTA-AATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
*
95877 GATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCG
65 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCG
95940 ATAGCATTGC
Statistics
Matches: 299, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
183 296 0.99
184 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (183 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
Found at i:97315 original size:199 final size:199
Alignment explanation
Indices: 96975--97947 Score: 1786
Period size: 199 Copynumber: 4.9 Consensus size: 199
96965 TTTAAATTAG
*
96975 TATCGACACAAAGTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
97040 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
97105 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
97170 AAAA
196 AAAA
*
97174 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCAGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
97239 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
97304 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
97369 AAAA
196 AAAA
*
97373 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
97438 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
97503 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
97567 AAAA
196 AAAA
97571 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
97636 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* * *
97701 CGACACATTTTATATATGGATCGACACTTTATGGGTGCACACTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
97766 AAAA
196 AAAA
* *
97770 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAGA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
* * *** *
97835 CTTGTACCGGTTACATTGAAAAATTACATATTACATTATACTTTTTTTTTTCGATGTTTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTTGGGTTCGATGATTTTGGGA
*
97900 TTGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
130 TCGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
97948 GGCCATATTG
Statistics
Matches: 752, Mismatches: 19, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
198 195 0.26
199 494 0.66
200 25 0.03
201 38 0.05
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.37
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
AAAA
Found at i:97753 original size:397 final size:398
Alignment explanation
Indices: 96975--97947 Score: 1795
Period size: 397 Copynumber: 2.4 Consensus size: 398
96965 TTTAAATTAG
* *
96975 TATCGACACAAAGTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
97040 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
97105 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
97170 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCAG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCAG
97235 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
* *
97300 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
326 GGATCGACACATTTTATATATGGATCGACACTTTATGGGTGCACACTGTTTTCCATTCATTCTGG
*
97365 GAAAAAAA
391 AAAAAAAA
97373 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
97438 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
97503 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
*
97567 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCAG
97632 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
97697 GGATCGACACATTTTATATATGGATCGACACTTTATGGGTGCACACTGTTTTCCATTCATTCTGG
326 GGATCGACACATTTTATATATGGATCGACACTTTATGGGTGCACACTGTTTTCCATTCATTCTGG
97762 AAAAAAAA
391 AAAAAAAA
*
97770 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAGA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* * *** *
97835 CTTGTACCGGTTACATTGAAAAATTACATATTACATTATACTTTTTTTTTTCGATGTTTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTTGGGTTCGATGATTTTGGGA
*
97900 TTGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
130 TCGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
97948 GGCCATATTG
Statistics
Matches: 559, Mismatches: 14, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
397 307 0.55
398 212 0.38
399 40 0.07
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.37
Consensus pattern (398 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCAG
TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACATTTTATATATGGATCGACACTTTATGGGTGCACACTGTTTTCCATTCATTCTGG
AAAAAAAA
Found at i:98112 original size:19 final size:19
Alignment explanation
Indices: 98066--98114 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
98056 TTATATTCAC
*
98066 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
98085 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
98104 ATACAAAATTA
1 ATACAAAATTA
98115 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:99952 original size:32 final size:32
Alignment explanation
Indices: 99910--99970 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
99900 TTAATATCAC
*
99910 CCCTTAACACCCCAACTTCTTTCACCACTTCA
1 CCCTCAACACCCCAACTTCTTTCACCACTTCA
* *
99942 CCCTCAACACCTCTACTTCTTTCACCACT
1 CCCTCAACACCCCAACTTCTTTCACCACT
99971 CCATCTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.30
Consensus pattern (32 bp):
CCCTCAACACCCCAACTTCTTTCACCACTTCA
Found at i:100044 original size:21 final size:21
Alignment explanation
Indices: 100004--100068 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
99994 CCCCTTATGC
* *
100004 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
100025 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
** *
100046 CGATCAAGTTTCTCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
100067 CT
1 CT
100069 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:102316 original size:17 final size:18
Alignment explanation
Indices: 102294--102336 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
102284 ATATATCCGG
102294 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
102311 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
102331 TATCAT
1 TATCAT
102337 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:102354 original size:20 final size:19
Alignment explanation
Indices: 102299--102345 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
102289 TCCGGTATCA
102299 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
102318 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
102339 TTTTACC
1 TTTTACC
102346 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:102494 original size:20 final size:20
Alignment explanation
Indices: 102468--102513 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
102458 CACTTTTAAA
102468 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
102487 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
102508 TTTACC
1 TTTACC
102514 TGGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:103799 original size:15 final size:15
Alignment explanation
Indices: 103779--103808 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
103769 CATCGATAAT
103779 ATATTTAAATAAAAA
1 ATATTTAAATAAAAA
*
103794 ATATTTATATAAAAA
1 ATATTTAAATAAAAA
103809 TTCATACCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATTTAAATAAAAA
Found at i:103801 original size:42 final size:41
Alignment explanation
Indices: 103734--103813 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 41
103724 AGTGAAATTC
** *
103734 TAATTATTTAAATAAAATTTGTTTATATAAAAATTCATCGA
1 TAATTATTTAAATAAAAAATATTTATATAAAAATTCATCGA
103775 TAATATATTTAAATAAAAAATATTTATATAAAAATTCAT
1 TAAT-TATTTAAATAAAAAATATTTATATAAAAATTCAT
103814 ACCATAGTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 4 0.11
42 31 0.89
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (41 bp):
TAATTATTTAAATAAAAAATATTTATATAAAAATTCATCGA
Found at i:107561 original size:31 final size:31
Alignment explanation
Indices: 107523--107623 Score: 193
Period size: 31 Copynumber: 3.3 Consensus size: 31
107513 TATAAATGAG
*
107523 AAAGTTATTTTGTTGATACTTTGAACTACTA
1 AAAGTTATTTTGTTGATACTTTCAACTACTA
107554 AAAGTTATTTTGTTGATACTTTCAACTACTA
1 AAAGTTATTTTGTTGATACTTTCAACTACTA
107585 AAAGTTATTTTGTTGATACTTTCAACTACTA
1 AAAGTTATTTTGTTGATACTTTCAACTACTA
107616 AAAGTTAT
1 AAAGTTAT
107624 AAAATTATTA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
31 69 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.45
Consensus pattern (31 bp):
AAAGTTATTTTGTTGATACTTTCAACTACTA
Found at i:110370 original size:41 final size:42
Alignment explanation
Indices: 110320--110595 Score: 208
Period size: 41 Copynumber: 7.0 Consensus size: 42
110310 CAACTCAGTT
* *
110320 TCCAAATTCGCGTTGCGATTTTCC-ATTTCGCATTGCAATAG
1 TCCAAATTCGCATTGCGATTTTCCAATTTCGCATTGCGATAG
* ** *
110361 TCCAAATTCGCATTGTGA---T---A--TCGCAACGCGAT-C
1 TCCAAATTCGCATTGCGATTTTCCAATTTCGCATTGCGATAG
* * * * * **
110394 T-TAAATTCGCAACT-C-AGTTTCCAAATTCGCGTTGCGATTT
1 TCCAAATTCGC-ATTGCGATTTTCCAATTTCGCATTGCGATAG
* * *
110434 TCC-ATTTCGCGTTGCGATTTTCC-ATTTCGCGTTGCGATAG
1 TCCAAATTCGCATTGCGATTTTCCAATTTCGCATTGCGATAG
*
110474 TCCAAATTCGCATTGCGATTTTCC-ATTTCGCGTTGCGATAG
1 TCCAAATTCGCATTGCGATTTTCCAATTTCGCATTGCGATAG
110515 TCCAAATTCGCATTGCGATTTTCC-ATTTCGCATTGCGATAG
1 TCCAAATTCGCATTGCGATTTTCCAATTTCGCATTGCGATAG
* * * ** **
110556 TCCAAAATCTCATTGCAATAGTCCAAAATCGCATTGCGAT
1 TCCAAATTCGCATTGCGATTTTCCAATTTCGCATTGCGAT
110596 TTTTCATTTC
Statistics
Matches: 189, Mismatches: 31, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
31 1 0.01
32 8 0.04
33 3 0.02
34 10 0.05
36 1 0.01
37 1 0.01
38 1 0.01
39 10 0.05
40 25 0.13
41 116 0.61
42 13 0.07
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (42 bp):
TCCAAATTCGCATTGCGATTTTCCAATTTCGCATTGCGATAG
Found at i:110372 original size:21 final size:21
Alignment explanation
Indices: 110320--110375 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
110310 CAACTCAGTT
* * **
110320 TCCAAATTCGCGTTGCGATTT
1 TCCAAATTCGCATTGCAATAG
*
110341 TCC-ATTTCGCATTGCAATAG
1 TCCAAATTCGCATTGCAATAG
110361 TCCAAATTCGCATTG
1 TCCAAATTCGCATTG
110376 TGATATCGCA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (21 bp):
TCCAAATTCGCATTGCAATAG
Found at i:110403 original size:113 final size:113
Alignment explanation
Indices: 110267--110488 Score: 297
Period size: 113 Copynumber: 2.0 Consensus size: 113
110257 GACCAACAAA
* *
110267 ATCGCAACGCGATCTTAAATTCGCAACGC-GATCTCTAACTTCACAACT-C-AGTTTCCAAATTC
1 ATCGCAACGCGATCTTAAATTCGCAACGCAG-TCTCCAAATTCAC-ACTGCGAGTTTCC-AATTC
110329 GCGTTGCGATTTTCCATTTCGCATTGCAATAGTCCAAATTCGCATTGTGAT
63 GCGTTGCGATTTTCCATTTCGCATTGCAATAGTCCAAATTCGCATTGTGAT
* * * ** * *
110380 ATCGCAACGCGATCTTAAATTCGCAACTCAGTTTCCAAATTCGCGTTGCGATTTTCCATTTCGCG
1 ATCGCAACGCGATCTTAAATTCGCAACGCAGTCTCCAAATTCACACTGCGAGTTTCCAATTCGCG
* *
110445 TTGCGATTTTCCATTTCGCGTTGCGATAGTCCAAATTCGCATTG
66 TTGCGATTTTCCATTTCGCATTGCAATAGTCCAAATTCGCATTG
110489 CGATTTTCCA
Statistics
Matches: 95, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
112 1 0.01
113 87 0.92
114 7 0.07
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (113 bp):
ATCGCAACGCGATCTTAAATTCGCAACGCAGTCTCCAAATTCACACTGCGAGTTTCCAATTCGCG
TTGCGATTTTCCATTTCGCATTGCAATAGTCCAAATTCGCATTGTGAT
Found at i:110442 original size:20 final size:20
Alignment explanation
Indices: 110419--110553 Score: 171
Period size: 20 Copynumber: 6.7 Consensus size: 20
110409 AGTTTCCAAA
110419 TTCGCGTTGCGATTTTCCAT
1 TTCGCGTTGCGATTTTCCAT
110439 TTCGCGTTGCGATTTTCCAT
1 TTCGCGTTGCGATTTTCCAT
** *
110459 TTCGCGTTGCGATAGTCCAAA
1 TTCGCGTTGCGATTTTCC-AT
*
110480 TTCGCATTGCGATTTTCCAT
1 TTCGCGTTGCGATTTTCCAT
** *
110500 TTCGCGTTGCGATAGTCCAAA
1 TTCGCGTTGCGATTTTCC-AT
*
110521 TTCGCATTGCGATTTTCCAT
1 TTCGCGTTGCGATTTTCCAT
*
110541 TTCGCATTGCGAT
1 TTCGCGTTGCGAT
110554 AGTCCAAAAT
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
20 66 0.67
21 32 0.33
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.39
Consensus pattern (20 bp):
TTCGCGTTGCGATTTTCCAT
Found at i:110559 original size:20 final size:20
Alignment explanation
Indices: 110419--110621 Score: 163
Period size: 20 Copynumber: 9.9 Consensus size: 20
110409 AGTTTCCAAA
* **
110419 TTCGCGTTGCGATTTTCCAT
1 TTCGCATTGCGATAGTCCAT
* **
110439 TTCGCGTTGCGATTTTCCAT
1 TTCGCATTGCGATAGTCCAT
* *
110459 TTCGCGTTGCGATAGTCCAAA
1 TTCGCATTGCGATAGTCC-AT
**
110480 TTCGCATTGCGATTTTCCAT
1 TTCGCATTGCGATAGTCCAT
* *
110500 TTCGCGTTGCGATAGTCCAAA
1 TTCGCATTGCGATAGTCC-AT
**
110521 TTCGCATTGCGATTTTCCAT
1 TTCGCATTGCGATAGTCCAT
*
110541 TTCGCATTGCGATAGTCCAAA
1 TTCGCATTGCGATAGTCC-AT
* * * *
110562 ATCTCATTGCAATAGTCCAAA
1 TTCGCATTGCGATAGTCC-AT
* ** *
110583 ATCGCATTGCGATTTTTCAT
1 TTCGCATTGCGATAGTCCAT
110603 TTCGCATTGCGATAGTCCA
1 TTCGCATTGCGATAGTCCA
110622 AAATCACATT
Statistics
Matches: 149, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
20 85 0.57
21 64 0.43
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (20 bp):
TTCGCATTGCGATAGTCCAT
Found at i:110577 original size:62 final size:62
Alignment explanation
Indices: 110506--110633 Score: 220
Period size: 62 Copynumber: 2.1 Consensus size: 62
110496 CCATTTCGCG
* * *
110506 TTGCGATAGTCCAAATTCGCATTGCGATTTTCCATTTCGCATTGCGATAGTCCAAAATCTCA
1 TTGCAATAGTCCAAAATCGCATTGCGATTTTCCATTTCGCATTGCGATAGTCCAAAATCACA
*
110568 TTGCAATAGTCCAAAATCGCATTGCGATTTTTCATTTCGCATTGCGATAGTCCAAAATCACA
1 TTGCAATAGTCCAAAATCGCATTGCGATTTTCCATTTCGCATTGCGATAGTCCAAAATCACA
110630 TTGC
1 TTGC
110634 GATTTTCCAT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (62 bp):
TTGCAATAGTCCAAAATCGCATTGCGATTTTCCATTTCGCATTGCGATAGTCCAAAATCACA
Found at i:110607 original size:82 final size:82
Alignment explanation
Indices: 110413--110615 Score: 264
Period size: 82 Copynumber: 2.5 Consensus size: 82
110403 CAACTCAGTT
* *
110413 TCCAAATTCGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTCCA
1 TCCAAATTCGCGTTGCGATTTTCCATTTCGCATTGCGATTTTCCATTTCGCATTGCGATAGTCCA
* * **
110478 AATTCGCATTGCGATTT
66 AAATCGCATTGCAATAG
* ** *
110495 TCC-ATTTCGCGTTGCGATAGTCCAAATTCGCATTGCGATTTTCCATTTCGCATTGCGATAGTCC
1 TCCAAATTCGCGTTGCGATTTTCC-ATTTCGCATTGCGATTTTCCATTTCGCATTGCGATAGTCC
*
110559 AAAATCTCATTGCAATAG
65 AAAATCGCATTGCAATAG
* * *
110577 TCCAAAATCGCATTGCGATTTTTCATTTCGCATTGCGAT
1 TCCAAATTCGCGTTGCGATTTTCCATTTCGCATTGCGAT
110616 AGTCCAAAAT
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.17
82 70 0.69
83 14 0.14
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (82 bp):
TCCAAATTCGCGTTGCGATTTTCCATTTCGCATTGCGATTTTCCATTTCGCATTGCGATAGTCCA
AAATCGCATTGCAATAG
Found at i:110611 original size:41 final size:41
Alignment explanation
Indices: 110566--110644 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
110556 TCCAAAATCT
* *
110566 CATTGCAATAGTCCAAAATCGCATTGCGATTTTTCATTTCG
1 CATTGCAATAGTCCAAAATCACATTGCGATTTTCCATTTCG
*
110607 CATTGCGATAGTCCAAAATCACATTGCGATTTTCCATT
1 CATTGCAATAGTCCAAAATCACATTGCGATTTTCCATT
110645 GCATTTGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (41 bp):
CATTGCAATAGTCCAAAATCACATTGCGATTTTCCATTTCG
Found at i:111652 original size:6 final size:6
Alignment explanation
Indices: 111626--111668 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
111616 TGCTGTCTCG
* *
111626 GGTCG- GGTCG- GGTCGG GGTCGT AGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
111669 GATACGTGTC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
5 10 0.29
6 24 0.71
ACGTcount: A:0.02, C:0.16, G:0.53, T:0.28
Consensus pattern (6 bp):
GGTCGT
Found at i:111867 original size:21 final size:21
Alignment explanation
Indices: 111760--111855 Score: 122
Period size: 21 Copynumber: 4.6 Consensus size: 21
111750 CGTTGCGAAA
*
111760 TGGAAAATCGCAATGCGATTT
1 TGGACAATCGCAATGCGATTT
*
111781 TGGACTATCGCAATGCGATTT
1 TGGACAATCGCAATGCGATTT
* * **
111802 TGGACTATCGCAACGCGA-AA
1 TGGACAATCGCAATGCGATTT
*
111822 TGGAAAATCGCAATGCGATTT
1 TGGACAATCGCAATGCGATTT
111843 TGGACAATCGCAA
1 TGGACAATCGCAA
111856 CGCAAATTTG
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.24
21 48 0.76
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (21 bp):
TGGACAATCGCAATGCGATTT
Found at i:113756 original size:29 final size:29
Alignment explanation
Indices: 113714--113771 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
113704 ATAATACCTC
113714 ATTAATTTTATTATCCATCTAAACTTCAA
1 ATTAATTTTATTATCCATCTAAACTTCAA
113743 ATTAATTTTATTATCCATCTAAACTTCAA
1 ATTAATTTTATTATCCATCTAAACTTCAA
113772 TTTATAGTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (29 bp):
ATTAATTTTATTATCCATCTAAACTTCAA
Found at i:117339 original size:20 final size:20
Alignment explanation
Indices: 117310--117362 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
117300 GCAGTATTCG
*
117310 TGCATGGATGCACA-ACAGGA
1 TGCATCGATGCACAGA-AGGA
*
117330 TGCATCGATGCATAGAAGGA
1 TGCATCGATGCACAGAAGGA
117350 TGCATCGATGCAC
1 TGCATCGATGCAC
117363 TAATTGCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.19
Consensus pattern (20 bp):
TGCATCGATGCACAGAAGGA
Found at i:117430 original size:22 final size:23
Alignment explanation
Indices: 117397--117439 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
117387 ATGGATGCAC
117397 TGCATGGTGCATCGATGCACTAG
1 TGCATGGTGCATCGATGCACTAG
*
117420 TGCA-GGTGCATGGATGCACT
1 TGCATGGTGCATCGATGCACT
117440 GTAGGGATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.26
Consensus pattern (23 bp):
TGCATGGTGCATCGATGCACTAG
Found at i:117452 original size:21 final size:20
Alignment explanation
Indices: 117383--117481 Score: 119
Period size: 21 Copynumber: 4.8 Consensus size: 20
117373 CGGTGTTTGA
*
117383 GTGCATGGATGCACTGCATG
1 GTGCATGGATGCACTGCAGG
*
117403 GTGCATCGATGCACTAGTGCA-G
1 GTGCATGGATGCAC---TGCAGG
*
117425 GTGCATGGATGCACTGTAGG
1 GTGCATGGATGCACTGCAGG
117445 GATGCATGGATGCACTGCAGGG
1 G-TGCATGGATGCACTGCA-GG
117467 GTGCATGGATGCACT
1 GTGCATGGATGCACT
117482 TTGACACCCT
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
19 3 0.04
20 15 0.22
21 30 0.43
22 17 0.25
23 4 0.06
ACGTcount: A:0.21, C:0.19, G:0.36, T:0.23
Consensus pattern (20 bp):
GTGCATGGATGCACTGCAGG
Found at i:117581 original size:29 final size:28
Alignment explanation
Indices: 117549--117614 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 28
117539 TGAAACCTTT
*
117549 AAAAACTCTGAATAAATTCAATT-AAGTCC
1 AAAAACTCTG--TAAATTCAATTCAAGGCC
*
117578 AAAAACATTTTGTAAATTCAATTCAAGGCC
1 AAAAAC--TCTGTAAATTCAATTCAAGGCC
117608 AAAAACT
1 AAAAACT
117615 ATTTTACCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
28 1 0.03
29 17 0.53
30 11 0.34
31 3 0.09
ACGTcount: A:0.48, C:0.17, G:0.08, T:0.27
Consensus pattern (28 bp):
AAAAACTCTGTAAATTCAATTCAAGGCC
Found at i:117612 original size:30 final size:30
Alignment explanation
Indices: 117561--117619 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
117551 AAACTCTGAA
*
117561 TAAATTCAATTAAGTCCAAAAAC-ATTTTG
1 TAAATTCAATTAAGGCCAAAAACTATTTTG
117590 TAAATTCAATTCAAGGCCAAAAACTATTTT
1 TAAATTCAATT-AAGGCCAAAAACTATTTT
117620 ACCTTAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 11 0.41
30 11 0.41
31 5 0.19
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (30 bp):
TAAATTCAATTAAGGCCAAAAACTATTTTG
Found at i:120826 original size:21 final size:22
Alignment explanation
Indices: 120802--120967 Score: 138
Period size: 21 Copynumber: 8.0 Consensus size: 22
120792 CTAGTCGTTG
*
120802 CAGCCTTCG-TGCATGGATGCA
1 CAGCCTTCGATGCATCGATGCA
**
120823 CAG-C-AGGATGCATCGATGCA
1 CAGCCTTCGATGCATCGATGCA
*
120843 CAGCCTTCG-TGCATGGATGCA
1 CAGCCTTCGATGCATCGATGCA
**
120864 CAG-C-AGGATGCATCGATGCA
1 CAGCCTTCGATGCATCGATGCA
* *
120884 CAACCTTCG-TGCATGGATGCA
1 CAGCCTTCGATGCATCGATGCA
**
120905 CAG-C-AGGATGCATCGATGCA
1 CAGCCTTCGATGCATCGATGCA
*
120925 CAGCCTT-GATGCATTGATGCA
1 CAGCCTTCGATGCATCGATGCA
* *
120946 TAACCTT-GATGCATCGATGCA
1 CAGCCTTCGATGCATCGATGCA
120967 C
1 C
120968 TAATTGCATT
Statistics
Matches: 113, Mismatches: 23, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
19 3 0.03
20 44 0.39
21 64 0.57
22 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (22 bp):
CAGCCTTCGATGCATCGATGCA
Found at i:120840 original size:20 final size:20
Alignment explanation
Indices: 120811--120928 Score: 114
Period size: 20 Copynumber: 5.8 Consensus size: 20
120801 GCAGCCTTCG
*
120811 TGCATGGATGCACAGCAGGA
1 TGCATCGATGCACAGCAGGA
**
120831 TGCATCGATGCACAGCCTTCG-
1 TGCATCGATGCACAG-C-AGGA
*
120852 TGCATGGATGCACAGCAGGA
1 TGCATCGATGCACAGCAGGA
* **
120872 TGCATCGATGCACAACCTTCG-
1 TGCATCGATGCAC-AGC-AGGA
*
120893 TGCATGGATGCACAGCAGGA
1 TGCATCGATGCACAGCAGGA
120913 TGCATCGATGCACAGC
1 TGCATCGATGCACAGC
120929 CTTGATGCAT
Statistics
Matches: 77, Mismatches: 15, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
19 2 0.03
20 44 0.57
21 29 0.38
22 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (20 bp):
TGCATCGATGCACAGCAGGA
Found at i:120859 original size:41 final size:41
Alignment explanation
Indices: 120802--120945 Score: 254
Period size: 41 Copynumber: 3.5 Consensus size: 41
120792 CTAGTCGTTG
120802 CAGCCTTCGTGCATGGATGCACAGCAGGATGCATCGATGCA
1 CAGCCTTCGTGCATGGATGCACAGCAGGATGCATCGATGCA
120843 CAGCCTTCGTGCATGGATGCACAGCAGGATGCATCGATGCA
1 CAGCCTTCGTGCATGGATGCACAGCAGGATGCATCGATGCA
*
120884 CAACCTTCGTGCATGGATGCACAGCAGGATGCATCGATGCA
1 CAGCCTTCGTGCATGGATGCACAGCAGGATGCATCGATGCA
*
120925 CAGCCTT-GATGCATTGATGCA
1 CAGCCTTCG-TGCATGGATGCA
120946 TAACCTTGAT
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
40 1 0.01
41 98 0.99
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (41 bp):
CAGCCTTCGTGCATGGATGCACAGCAGGATGCATCGATGCA
Found at i:120936 original size:62 final size:61
Alignment explanation
Indices: 120829--120967 Score: 156
Period size: 62 Copynumber: 2.2 Consensus size: 61
120819 TGCACAGCAG
** *
120829 GATGCATCGATGCACAGCCTTCG-TGCATGGATGCACAGCAGGATGCATCGATGCACAACCTT
1 GATGCATCGATGCACAG-C-AGGATGCATCGATGCACAGCAGGATGCATCGATGCACAACCTT
* ** * *
120891 CG-TGCATGGATGCACAGCAGGATGCATCGATGCACAGCCTTGATGCATTGATGCATAACCTT
1 -GATGCATCGATGCACAGCAGGATGCATCGATGCACAG-CAGGATGCATCGATGCACAACCTT
120953 GATGCATCGATGCAC
1 GATGCATCGATGCAC
120968 TAATTGCATT
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
60 1 0.02
61 16 0.25
62 46 0.72
63 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (61 bp):
GATGCATCGATGCACAGCAGGATGCATCGATGCACAGCAGGATGCATCGATGCACAACCTT
Found at i:121156 original size:29 final size:31
Alignment explanation
Indices: 121124--121183 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
121114 AAATTTTGAA
121124 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
*
121153 TAAATTCAATTCAAGTCTAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
121184 CCTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 10 0.36
31 7 0.25
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:126353 original size:36 final size:36
Alignment explanation
Indices: 126293--126612 Score: 318
Period size: 36 Copynumber: 8.9 Consensus size: 36
126283 AATTTAGTCA
*
126293 AAACAAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTG
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * *
126330 AAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* *
126366 AAACAAATTTTGTCTTTCTTGAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* *
126402 AAACAAA------ATCT-TTGA-ATATGTTT-TACATT-
1 AAACAAATTTTGTCTCTCTTGAGACA-GTTTCT-C-TTG
* * * *
126431 AAACAAATTTCGTCTCCCTTGAGACAATTTCTTTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * *
126467 GAACTAAGTTTTGTCTCCCTTGAGACAGTTTCTCTTG
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
126504 AAACAAATTTTGTCTTTGTCTCTCTTGAGACAGTTTCTCTTG
1 AAACAAA-----T-TTTGTCTCTCTTGAGACAGTTTCTCTTG
* *
126546 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTA
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
126582 AAACAAATTTTGTCTCTCTTGAGACAGTTTC
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTC
126613 CCTTTAAATA
Statistics
Matches: 237, Mismatches: 26, Indels: 41
0.78 0.09 0.13
Matches are distributed among these distances:
28 2 0.01
29 16 0.07
30 4 0.02
35 4 0.02
36 134 0.57
37 42 0.18
41 1 0.00
42 34 0.14
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
Found at i:126535 original size:42 final size:42
Alignment explanation
Indices: 126476--126596 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 42
126466 GGAACTAAGT
*
126476 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTTGTC
1 TTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTC
126518 TTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA-----T-
1 TTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTC
* *
126554 TTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTC
1 TTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTC
126596 T
1 T
126597 CTCTTGAGAC
Statistics
Matches: 70, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
36 33 0.47
37 1 0.01
41 1 0.01
42 35 0.50
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (42 bp):
TTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTC
Found at i:126564 original size:21 final size:21
Alignment explanation
Indices: 126539--126603 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 21
126529 TGAGACAGTT
126539 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
* *
126560 TCTCTTGAGAC--A-GTT-TC
1 TCTCTTGAAACAAATTTTGTC
*
126577 -C-CTTAAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
126596 TCTCTTGA
1 TCTCTTGA
126604 GACAGTTTCC
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
15 6 0.19
16 1 0.03
17 3 0.09
18 4 0.12
19 3 0.09
20 1 0.03
21 14 0.44
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.42
Consensus pattern (21 bp):
TCTCTTGAAACAAATTTTGTC
Found at i:126572 original size:78 final size:79
Alignment explanation
Indices: 126442--126596 Score: 231
Period size: 78 Copynumber: 2.0 Consensus size: 79
126432 AACAAATTTC
* * * * *
126442 GTCTCCCTTGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCCCTTGAGACAGTTTCTCTTGAAA
1 GTCTCCCTTGAGACAATTTCTCTTGAAACTAAATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAA
126507 CAAATTTTGTCTTT
66 CAAATTTTGTCTTT
* * *
126521 GTCTCTCTTGAGACAGTTTCTCTTGAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAA
1 GTCTCCCTTGAGACAATTTCTCTTGAAACTAAATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAA
126585 CAAATTTTGTCT
66 CAAATTTTGTCT
126597 CTCTTGAGAC
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
78 43 0.63
79 25 0.37
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (79 bp):
GTCTCCCTTGAGACAATTTCTCTTGAAACTAAATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAA
CAAATTTTGTCTTT
Found at i:127170 original size:3 final size:3
Alignment explanation
Indices: 127164--127220 Score: 63
Period size: 3 Copynumber: 20.7 Consensus size: 3
127154 AAAAAACATT
127164 TTA TTA -TA TTA -TA TTA -TA TTA -TA TTA -TA TTA TTTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
127205 TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TT
127221 TTGTAGACCC
Statistics
Matches: 47, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
2 12 0.26
3 32 0.68
4 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:127175 original size:5 final size:5
Alignment explanation
Indices: 127165--127211 Score: 69
Period size: 5 Copynumber: 9.2 Consensus size: 5
127155 AAAAACATTT
127165 TATTA TATTA TATTA TATTA TATTA TATTA T-TTA TTATTA TTATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA -TATTA -TATTA T
127212 TATTTTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
4 3 0.08
5 28 0.70
6 9 0.22
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TATTA
Found at i:128747 original size:4 final size:4
Alignment explanation
Indices: 128706--128730 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
128696 TTTTCGTTCA
128706 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
128731 TCTCTTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:128853 original size:12 final size:13
Alignment explanation
Indices: 128831--128859 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
128821 CGAGTTGAAT
128831 TTTTAAATTTTAA
1 TTTTAAATTTTAA
128844 TTTT-AATTTTAA
1 TTTTAAATTTTAA
128856 TTTT
1 TTTT
128860 CGCAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTAAATTTTAA
Found at i:130546 original size:16 final size:15
Alignment explanation
Indices: 130525--130564 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
130515 ATATTTCGCA
130525 TTTTTTTTCTTCTCTT
1 TTTTTTTTCTTC-CTT
130541 TTTTTTTTCTTCCTT
1 TTTTTTTTCTTCCTT
*
130556 CTTTTTTTC
1 TTTTTTTTC
130565 ATTACATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTTTTCTTCCTT
Found at i:131551 original size:95 final size:96
Alignment explanation
Indices: 131440--131702 Score: 341
Period size: 95 Copynumber: 2.7 Consensus size: 96
131430 AGATTATAAT
* * *
131440 ATTATATATATACAATAAAACTTGAGTTGTCCCTCTAAACCAATTAGTTAAACACCCCGGCTTTA
1 ATTATATATATACAATAAAACTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACCCCGGCTTTA
*
131505 TGGATAAGATTCAACTAACCTAATAAAGGTG
66 TGGATAAGATTCAACTAACCTAATAAAGGCG
* *
131536 ATTATA-ATATACAATAAAACTTGAGTTGTCCCTCTAGAGTAATTGGTTAAACTCCCCGGCTTTA
1 ATTATATATATACAATAAAACTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACCCCGGCTTTA
* * * *
131600 TGGATAATATTCAGCTAGCCTGATAAAGGCG
66 TGGATAAGATTCAACTAACCTAATAAAGGCG
* * * * * *
131631 ATTATAATATTTATACAATGATA-TTAAGCTGTCACTCTAGAGCAATTGGTTAAACGCCCCGGCT
1 ATTAT-ATA--TATACAATAAAACTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACCCCGGCT
131695 TTATGGAT
63 TTATGGAT
131703 CCAGCTAGCC
Statistics
Matches: 146, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
95 84 0.58
96 7 0.05
97 1 0.01
98 44 0.30
99 10 0.07
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (96 bp):
ATTATATATATACAATAAAACTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACCCCGGCTTTA
TGGATAAGATTCAACTAACCTAATAAAGGCG
Found at i:133112 original size:124 final size:124
Alignment explanation
Indices: 132962--133205 Score: 364
Period size: 124 Copynumber: 2.0 Consensus size: 124
132952 CAATACAAGC
* ** *
132962 TTGGATTTCAACTTCACGACGAAGGATATTCAAGTT-AAGGCTCAACTTCAGGACGAAGGGGTCA
1 TTGGATTTCAACTTCACGACGAAGGATATCCAA-TTCAAGGCTCAACTTCACAACGAAGGGGCCA
* * * * *
133026 TTCACGGTTTCAACTTCACGACGAAGGGAATCGTGCACACAAGTAACATTCATCTTTAGA
65 TCCACGATTTCAACATCACGACGAAGGGAATCGTACACACAAGCAACATTCATCTTTAGA
*
133086 TTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAATGGGCCAT
1 TTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCAT
* *
133151 CCACGATTTCAACATCACGACGAAGGGAATCGTACCCACCAGCAACATTCATCTT
66 CCACGATTTCAACATCACGACGAAGGGAATCGTACACACAAGCAACATTCATCTT
133206 CAGGAACAAG
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
123 2 0.02
124 105 0.98
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (124 bp):
TTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCAT
CCACGATTTCAACATCACGACGAAGGGAATCGTACACACAAGCAACATTCATCTTTAGA
Found at i:133346 original size:36 final size:36
Alignment explanation
Indices: 133291--133716 Score: 345
Period size: 36 Copynumber: 12.1 Consensus size: 36
133281 AATTTACTTA
133291 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * *
133328 AAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * *
133364 AAACAAATTTTATCTCTCTTAAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * * * *
133400 GAACAAA------ATCT-TTGA-ATATGTTT-TATATT
1 AAACAAATTTTGTCTCTCTTGAGACA-GTTTCTCT-TG
* * *
133429 AAACAAATTTTGTCTCCCTTGATACAGTTTCTTTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * *
133465 GAACTAAGTTTTGTCTCTCTTGAGACAGTTTTTCTTG
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* *
133502 AATCAAATTTTGTCTCTCTTGATACAGTTTC-CTTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTC-TTG
* *
133538 AAACAAATTTTGTTTCTCTTGAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* *
133574 AAACAAA------ATCT-TTGA-ATATGTTT-TACATT-
1 AAACAAATTTTGTCTCTCTTGAGACA-GTTTCT-C-TTG
* * *
133603 AAA-AAATTTCGTCTCCCTTGAGACAGTTTCTTTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * * *
133638 GAACTAAGTTTTGTCTCTCTTGAGATAGTTTCCCTTG
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
133675 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTG
133712 AAACA
1 AAACA
133717 CCAATCTTTG
Statistics
Matches: 309, Mismatches: 50, Indels: 60
0.74 0.12 0.14
Matches are distributed among these distances:
28 8 0.03
29 26 0.08
30 8 0.03
34 4 0.01
35 13 0.04
36 148 0.48
37 102 0.33
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
Found at i:133543 original size:138 final size:138
Alignment explanation
Indices: 133291--133544 Score: 357
Period size: 138 Copynumber: 1.8 Consensus size: 138
133281 AATTTACTTA
*
133291 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGT
1 AAACAAAGTTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGT
* *
133356 TTCCCTTTAAACAAATTTTATCTCTCTTAAGACAGTTTCCCTTGGAACAAAATCTTTGAATATGT
66 TTCCCTTGAAACAAATTTTATCTCTCTTAAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGT
133421 TTTATATT
131 TTTATATT
* * * * *
133429 AAACAAA-TTTTGTCTCCCTTGATACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAG
1 AAACAAAGTTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AAATTTTATCTCTCTTGAGACAG
** * * * * *
133493 TTTTTCTTGAATCAAATTTTGTCTCTCTTGATACAGTTTCCTTTGAAACAAA
65 TTTCCCTTGAAACAAATTTTATCTCTCTTAAGACAGTTTCCCTTGAAACAAA
133545 TTTTGTTTCT
Statistics
Matches: 100, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
137 29 0.29
138 71 0.71
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (138 bp):
AAACAAAGTTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGT
TTCCCTTGAAACAAATTTTATCTCTCTTAAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGT
TTTATATT
Found at i:133586 original size:174 final size:173
Alignment explanation
Indices: 133296--133716 Score: 675
Period size: 174 Copynumber: 2.4 Consensus size: 173
133286 ACTTAAAACA
*
133296 AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCC
1 AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTT-CC
*
133361 TTT-AAACAAATTTTATCTCTCTTAAGACAGTTTCCCTTGGAACAAAATCTTTGAATATGTTTTA
65 TTTGAAACAAATTTTATCTCTCTTAAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTTTTA
* * *
133425 TATTAAACAAATTTTGTCTCCCTTGATACAGTTTCTTTTGGAACT
130 CATTAAA-AAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACT
* * *
133470 AAGTTTTGTCTCTCTTGAGACAGTTTTTCTTGAATCAAATTTTGTCTCTCTTGATACAGTTTCCT
1 AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCT
* * *
133535 TTGAAACAAATTTTGTTTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTTTTAC
66 TTGAAACAAATTTTATCTCTCTTAAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTTTTAC
133600 ATTAAAAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACT
131 ATTAAAAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACT
* *
133643 AAGTTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTT-C
1 AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCC
133707 TCTTGAAACA
65 T-TTGAAACA
133717 CCAATCTTTG
Statistics
Matches: 228, Mismatches: 16, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
173 77 0.34
174 151 0.66
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.43
Consensus pattern (173 bp):
AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCT
TTGAAACAAATTTTATCTCTCTTAAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTTTTAC
ATTAAAAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACT
Found at i:133668 original size:37 final size:37
Alignment explanation
Indices: 133613--133716 Score: 154
Period size: 37 Copynumber: 2.8 Consensus size: 37
133603 AAAAAATTTC
* * * *
133613 GTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTT
1 GTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTTTT
* *
133650 GTCTCTCTTGAGATAGTTTCCCTTGAAACAAAGTTTT
1 GTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTTTT
133687 GTCTCTCTTGAGACAGTTTCTCTTGAAACA
1 GTCTCTCTTGAGACAGTTTCTCTTGAAACA
133717 CCAATCTTTG
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.40
Consensus pattern (37 bp):
GTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTTTT
Found at i:133773 original size:67 final size:67
Alignment explanation
Indices: 133657--133784 Score: 204
Period size: 67 Copynumber: 1.9 Consensus size: 67
133647 TTTGTCTCTC
* * *
133657 TTGAGATAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACACCAAT
1 TTGAGATAGTTTCCCTTGAAACAAAATTTTGCCTCCCTTGAGACAGTTTCTCTTGAAACACCAAT
133722 CT
66 CT
*
133724 TTGA-ATATGTTTCTCTTGAAACAAAATTTTGCCTCCCTTGAGACAGTTTCTCTTGAAACAC
1 TTGAGATA-GTTTCCCTTGAAACAAAATTTTGCCTCCCTTGAGACAGTTTCTCTTGAAACAC
133785 AAAAAAAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
66 3 0.05
67 53 0.95
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (67 bp):
TTGAGATAGTTTCCCTTGAAACAAAATTTTGCCTCCCTTGAGACAGTTTCTCTTGAAACACCAAT
CT
Found at i:133833 original size:32 final size:32
Alignment explanation
Indices: 133788--133852 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
133778 GAAACACAAA
133788 AAAAAAACATTTGAAAATGTTTCTCTTGAAAC
1 AAAAAAACATTTGAAAATGTTTCTCTTGAAAC
* *
133820 AAAAAAACCTTTGAAAATGTTTTTCTTGAAAC
1 AAAAAAACATTTGAAAATGTTTCTCTTGAAAC
133852 A
1 A
133853 TCAAACCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.32
Consensus pattern (32 bp):
AAAAAAACATTTGAAAATGTTTCTCTTGAAAC
Found at i:134193 original size:3 final size:3
Alignment explanation
Indices: 134187--134232 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
134177 AAAAAACATT
134187 TTA TTA -TA TTA -TA TTA TTTA TTA TTA TTA TTA TTA TT- TTA TT-
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
134229 TTA T
1 TTA T
134233 AGGCCCCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
2 8 0.21
3 27 0.71
4 3 0.08
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:135559 original size:13 final size:11
Alignment explanation
Indices: 135526--135552 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
135516 GACCTTTTAA
135526 CATGTCTATAT
1 CATGTCTATAT
135537 CATGTCTATAT
1 CATGTCTATAT
135548 CATGT
1 CATGT
135553 GTCTATAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.44
Consensus pattern (11 bp):
CATGTCTATAT
Found at i:135715 original size:23 final size:20
Alignment explanation
Indices: 135673--135720 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 20
135663 GTTCATATTT
*
135673 ATTTACTTATTTTCTCTTCA
1 ATTTACTTATTTTATCTTCA
*
135693 GTTTACTTAATATTTATCGTTCA
1 ATTTACTT-AT-TTTATC-TTCA
135716 ATTTA
1 ATTTA
135721 ACATTCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 5 0.23
23 8 0.36
ACGTcount: A:0.25, C:0.15, G:0.04, T:0.56
Consensus pattern (20 bp):
ATTTACTTATTTTATCTTCA
Found at i:138518 original size:29 final size:29
Alignment explanation
Indices: 138475--138557 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
138465 CTCACCTAAC
138475 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
138505 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
138534 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
138558 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:143289 original size:29 final size:29
Alignment explanation
Indices: 143246--143328 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
143236 CTCACCTAAC
143246 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
143276 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
143305 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
143329 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:146067 original size:182 final size:182
Alignment explanation
Indices: 145760--147688 Score: 3401
Period size: 182 Copynumber: 10.6 Consensus size: 182
145750 CGCGTTCACC
** * *
145760 TTTTGTCATTTATAGACCGGTTTTATCATATTTTTACATGTTATATTATTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
145825 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTATT-AATTCCAAAAGTGTCG
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAAATTCCAAAAGTGTCG
*
145889 ATACTTATAATAAATTATCGACACTTTCAACATATCCGGTAGCGCTTTACCTG
130 ATACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
*
145942 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
146007 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTATT-AATTCCAAAAGTGTCG
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAAATTCCAAAAGTGTCG
* *
146071 ATACTTATAATAAATTATCGACACTTTCAACATATCCGGTAGCGATTTACCTG
130 ATACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
* *
146124 TTTTGTCATTTTGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
146189 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
* *
146254 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGTTTTACATG
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
* *
146306 TTTTGTCATTTCGAGACCGGTTTTGTCATATTATTACCTGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
146371 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
*
146436 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACTTG
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
146488 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
* *
146553 TTTATAAAGTATCGACACGTTATTGGCGCTATAACTTCTTCTCTTATT-AATTCCAAAA--GTAG
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAAATTCCAAAAGTGTCG
*
146615 ATACTTATAATAAATTATTGACACTTTCAACATAACCGGTAGCGCTTTACCTG
130 ATACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
146668 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
*
146733 TTTATAAAGTATCGACACTTTATTAGCGCTATAAC-TCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
*
146797 TACATATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
*
146849 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
*
146914 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTTCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
* * *
146979 TACTTATAACAAATTATCGACACTTTTAACATATCCGGTAGCGCTTTACCTG
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
147031 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
* *
147096 TTTATAAAATATCGACACTTTATTGGCGCTATAACTTTTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
147161 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
*
147213 TTTTGTCATTTCGAGACTGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
*
147278 TTTATAAAGTATCGACACGTTATTGGCGCTATAACTTCTTCTCTTATT-AATTCCAAAA--GTCG
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAAATTCCAAAAGTGTCG
* *
147340 ATACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGAGTTTTACCTG
130 ATACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
*
147393 TTTTGTCATTTTGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
147458 TTTATAAAGTATCGACACTTTATTGGCGCTATAAC-TCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
*
147522 TACGTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
* * *
147574 TTTTGTCATTTTGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATAAATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
* * *
147639 TTTATAAAGTATCGACACTTTATTGACGATAAAACTTCTTCTCTTTTAAA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAA
147689 AAGGTAAAAT
Statistics
Matches: 1680, Mismatches: 56, Indels: 22
0.96 0.03 0.01
Matches are distributed among these distances:
178 4 0.00
179 38 0.02
180 304 0.18
181 303 0.18
182 1027 0.61
183 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (182 bp):
TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
Done.