genome.fa.s899.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000899.1 Hibiscus syriacus cultivar Beakdansim tig00001766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86665

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240--1287	19	2.5	20	82	3	62	52	8	10	29	1.65
1981--2051	34	2.1	33	86	2	97	33	14	29	22	1.93
2290--2373	21	3.8	21	73	14	78	30	23	21	23	1.99
2382--2559	21	8.6	21	82	7	229	22	21	23	32	1.98
2363--2559	41	4.8	42	85	6	219	22	21	22	32	1.98
2382--2539	62	2.5	62	95	0	289	22	21	22	33	1.97
4971--5085	60	1.9	60	82	3	142	30	11	19	39	1.86
13179--13280	38	2.6	39	82	6	134	48	0	2	49	1.16
14081--14144	21	3.2	21	63	24	57	57	10	3	28	1.48
14071--14147	38	2.0	38	100	0	154	57	10	5	27	1.53
15633--15688	9	5.5	11	75	23	52	5	32	26	35	1.79
15626--15689	30	2.1	30	91	0	101	9	31	25	34	1.87
17378--17403	2	13.0	2	100	0	52	50	0	0	50	1.00
17523--17611	44	2.0	44	100	0	178	40	13	2	43	1.56
27758--27855	21	4.8	20	75	10	81	38	21	18	21	1.93
27822--28051	20	11.5	20	81	5	232	36	24	18	19	1.94
28954--28978	12	2.1	12	100	0	50	72	0	28	0	0.86
31255--31438	33	5.2	34	75	16	144	46	17	21	14	1.83
31241--31344	33	3.1	33	86	8	147	46	19	21	13	1.84
31255--31438	19	10.4	19	79	17	227	46	17	21	14	1.83
31283--31419	52	2.6	52	98	1	265	46	16	22	13	1.83
31285--31460	52	3.4	52	90	5	232	46	17	23	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31341--31460	33	3.5	33	86	10	186	45	17	22	14	1.84
31322--31460	71	2.0	71	100	0	278	46	17	22	14	1.84
31485--31563	19	4.4	19	80	16	105	13	22	17	45	1.84
31670--31706	14	2.6	14	91	0	65	45	21	0	32	1.52
33688--33744	14	3.7	14	77	20	60	45	22	21	10	1.82
33669--33761	33	2.8	33	93	0	159	47	20	20	11	1.81
33632--33766	19	7.6	19	75	16	119	45	22	19	11	1.83
33762--33890	19	7.3	18	75	17	112	8	17	27	46	1.77
33762--33853	33	2.8	33	91	3	141	7	18	27	46	1.76
33938--34406	93	5.1	93	99	0	913	45	19	13	21	1.84
36110--36199	14	5.7	14	74	23	81	42	23	25	8	1.83
36102--36216	33	3.5	33	96	0	212	45	20	24	9	1.81
36121--36221	19	5.8	19	73	21	105	42	21	25	9	1.84
36233--36287	14	3.6	14	73	21	56	9	25	23	41	1.83
36217--36287	33	2.2	33	94	0	124	8	22	25	43	1.81
36228--36309	33	2.5	33	89	2	119	9	25	21	42	1.84
36240--36328	20	4.8	20	72	19	75	12	24	19	43	1.85
36408--36478	33	2.2	33	92	0	115	47	18	22	11	1.80
36659--36713	22	2.5	22	81	0	74	20	16	40	23	1.91
36860--37053	20	9.6	20	82	5	221	19	19	25	35	1.95
36860--37053	60	3.2	60	83	0	253	19	19	25	35	1.95
37020--37117	21	4.8	20	75	10	81	21	18	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37020--37117	42	2.4	41	78	10	110	21	18	21	38	1.93
37904--37930	2	13.5	2	100	0	54	48	0	0	51	1.00
37960--37994	18	1.9	18	100	0	70	51	5	5	37	1.50
38353--38377	2	12.5	2	100	0	50	48	0	0	52	1.00
44071--44118	22	2.2	22	85	7	62	31	16	27	25	1.97
45101--45190	40	2.2	40	86	9	119	51	0	2	46	1.13
45105--45184	21	3.8	21	69	9	65	55	0	2	42	1.13
45132--45193	21	3.3	18	72	16	54	48	0	1	50	1.10
53729--53778	19	2.7	18	84	6	64	38	8	12	42	1.71
54553--54597	19	2.4	18	86	13	65	17	8	4	68	1.32
55852--55994	44	3.1	45	85	8	198	30	22	6	41	1.78
56085--56558	59	8.1	58	78	6	327	29	22	11	35	1.90
56184--56559	116	3.2	117	80	5	368	29	23	11	35	1.90
56231--56551	58	5.5	58	81	4	331	28	23	11	36	1.89
56401--56497	30	3.3	30	62	21	78	29	24	9	36	1.87
56989--57039	24	2.1	24	96	0	93	37	19	21	21	1.95
61060--61093	16	2.1	16	89	10	52	61	2	0	35	1.11
63445--63495	9	5.2	10	76	19	54	76	9	1	11	1.10
64204--64271	34	2.0	34	85	0	91	29	7	42	20	1.79
64742--64855	42	2.7	40	72	6	93	29	23	20	26	1.99
64888--65443	39	14.2	39	90	0	878	34	15	19	30	1.93
65415--65623	76	2.8	76	83	7	243	41	13	14	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65486--65623	36	3.7	35	69	15	107	42	13	14	28	1.84
67258--67299	21	2.0	21	90	4	68	23	30	21	23	1.99
68493--68530	15	2.4	16	87	12	53	44	18	5	31	1.72
74154--74218	23	2.9	23	82	11	73	23	21	26	29	1.99
74183--74226	21	2.1	21	100	0	88	20	18	22	38	1.93
74183--74233	21	2.4	21	93	0	75	21	17	23	37	1.94
82501--82534	17	2.0	17	88	11	52	52	8	0	38	1.33
83305--83369	33	2.0	33	90	0	103	41	4	38	15	1.68
85616--85653	15	2.5	15	95	0	67	31	21	7	39	1.82

Tables:   1

The End!